BLASTX nr result

ID: Ephedra26_contig00006593 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00006593
         (660 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK24731.1| unknown [Picea sitchensis]                              91   3e-16
ref|XP_006878562.1| hypothetical protein AMTR_s00011p00238390 [A...    67   4e-09

>gb|ABK24731.1| unknown [Picea sitchensis]
          Length = 358

 Score = 90.9 bits (224), Expect = 3e-16
 Identities = 70/194 (36%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
 Frame = -2

Query: 539 RQPSLKVVTPHQSFNKPQTVPGKVEVK-PKDETQQPSWLASKVVPRSQSSRQNTELETPQ 363
           RQPS ++        KPQ  P +++ + PK + Q         VP+ Q   Q  + + P+
Sbjct: 70  RQPSFQL---QPQVPKPQPQPQQLQPQVPKPQPQPQPQQLQPQVPKPQPQPQQLQPQVPK 126

Query: 362 LQPS-KVEAKEEPFKPSVTTKTAEPPKAVVSFQASSTPG---SSNAESREGKMIVPEKTA 195
            QP  + + KE+P K     K  E   A   F          SS A+SR G+MIVP    
Sbjct: 127 PQPQPQPQPKEDPKKAE--QKVPEESSASAPFPEEKIQPVSLSSEADSRAGQMIVPS--- 181

Query: 194 EQDNMAI-VKVSEPP---KSLQQGVKEDATKLAKKIGDLQAQ------GDSNVKDLGVRV 45
             DN  + +K S+P    KSLQQG++ED + L  ++ +L  Q      GD  ++DLGVRV
Sbjct: 182 --DNRTLALKGSQPAEQHKSLQQGIREDISNLTHRLSELHGQQKLGSNGDQKMQDLGVRV 239

Query: 44  ITLAGDNKGATMDL 3
           ITLAG+N+GA MD+
Sbjct: 240 ITLAGENRGAIMDM 253


>ref|XP_006878562.1| hypothetical protein AMTR_s00011p00238390 [Amborella trichopoda]
           gi|548831905|gb|ERM94707.1| hypothetical protein
           AMTR_s00011p00238390 [Amborella trichopoda]
          Length = 773

 Score = 67.4 bits (163), Expect = 4e-09
 Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 13/196 (6%)
 Frame = -2

Query: 551 MPEQRQPSLKVVTPHQSFNKPQTVP-----GKVEVKPKDETQQPSWLASKVVPRSQSSRQ 387
           + E+   S +VV P +   KP+  P      +   K  +   QP+ +  K  P+ +    
Sbjct: 428 LKEENMESQRVVEPKKE-EKPEPKPTEQAGNEAASKSGEAALQPAIVHEKNTPKEREKTP 486

Query: 386 NTELETPQ---LQPSK-----VEAKEEPFKPSVTTKTAEPPKAVVSFQASSTPGSSNAES 231
            T+L+  +   L P+K      EA++E    +   ++ + P+   S   S+   +S    
Sbjct: 487 ETQLDNTRRERLDPNKESKLAAEAQKEVQPEAKEEESKQAPREDSSRLRST---ASFPSG 543

Query: 230 REGKMIVPEKTAEQDNMAIVKVSEPPKSLQQGVKEDATKLAKKIGDLQAQGDSNVKDLGV 51
           +EG+ + P     +D+ A        + LQ+ +KED ++L +K   ++AQ    + D+GV
Sbjct: 544 KEGRNVTPVCQNRRDSTA--------QGLQRNIKEDVSRLTRK--SMEAQQRQALDDIGV 593

Query: 50  RVITLAGDNKGATMDL 3
           RV+TLAG+N+GA+MDL
Sbjct: 594 RVLTLAGENRGASMDL 609


Top