BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00006391
         (2316 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                1416   0.0  
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1410   0.0  
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1405   0.0  
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1405   0.0  
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1405   0.0  
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1405   0.0  
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1401   0.0  
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1400   0.0  
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...  1387   0.0  
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...  1251   0.0  
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...  1219   0.0  
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             994   0.0  
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   990   0.0  
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   986   0.0  
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               877   0.0  
gb|AFM77886.1| replicase [Hosta virus X]                              875   0.0  
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   874   0.0  
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 871   0.0  
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   871   0.0  
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   869   0.0  

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score = 1416 bits (3666), Expect = 0.0
 Identities = 694/780 (88%), Positives = 725/780 (92%), Gaps = 9/780 (1%)
 Frame = +3

Query: 3    RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182
            R+LP+A +P HW+ P   K++ TLR+LNRFPTPW PDRARARAFTSDVKNSRTGKALHRE
Sbjct: 563  RELPRAIMPAHWDSPQFEKIIATLRNLNRFPTPWSPDRARARAFTSDVKNSRTGKALHRE 622

Query: 183  TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362
            +QTWKETQTMLT+N   + AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD
Sbjct: 623  SQTWKETQTMLTDNAEIHTAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 682

Query: 363  WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542
            WLKKLPHNPPEQFRTFERAFV S+ PVVIFDDYGKLPQGYIEAFAMTHA+LEL+ILTGDP
Sbjct: 683  WLKKLPHNPPEQFRTFERAFVSSRGPVVIFDDYGKLPQGYIEAFAMTHANLELIILTGDP 742

Query: 543  RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695
            RQSTHHEANEEA              LSRYYINATHRNSKFLANKLG+YSSN CPLKVTY
Sbjct: 743  RQSTHHEANEEALISKLSPATTTFSELSRYYINATHRNSKFLANKLGIYSSNHCPLKVTY 802

Query: 696  GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875
            GFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT
Sbjct: 803  GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 862

Query: 876  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055
            ALSRAVDS HFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSA            
Sbjct: 863  ALSRAVDSNHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAPPDPPKSVMPPV 922

Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235
                VE+ TT LDDF+E L DKF+REIFTEAHGHTNCVQ DDPTTQLFSHQQAKDEALLW
Sbjct: 923  THFPVEECTTALDDFREELHDKFDREIFTEAHGHTNCVQTDDPTTQLFSHQQAKDEALLW 982

Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415
            ETIKARLTISTPEAN+EEFRAKKDLGDILW NYHKAM LPKEQP+FSE+LWTRCAEEVQN
Sbjct: 983  ETIKARLTISTPEANIEEFRAKKDLGDILWTNYHKAMNLPKEQPDFSEELWTRCAEEVQN 1042

Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595
            TYLKKS++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV
Sbjct: 1043 TYLKKSLNQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1102

Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1775
            MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL+YWDFSKP+YANDFTAFDQSQD
Sbjct: 1103 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLSYWDFSKPAYANDFTAFDQSQD 1162

Query: 1776 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1955
            GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY
Sbjct: 1163 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1222

Query: 1956 THTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 2135
            THTRF IPEGTAQIYAGDDCAIAQVCPEKPSFALLK+RIALQAKPAYTPQERGQWAEFCG
Sbjct: 1223 THTRFNIPEGTAQIYAGDDCAIAQVCPEKPSFALLKDRIALQAKPAYTPQERGQWAEFCG 1282

Query: 2136 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315
            YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGD+L DLLS
Sbjct: 1283 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDELHDLLS 1342


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1410 bits (3650), Expect = 0.0
 Identities = 695/780 (89%), Positives = 721/780 (92%), Gaps = 9/780 (1%)
 Frame = +3

Query: 3    RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182
            R+LP+A    HW  P + ++L+TLRSLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE
Sbjct: 575  RELPRADGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRE 634

Query: 183  TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362
            +Q WKETQTMLTEN   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLD
Sbjct: 635  SQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLD 694

Query: 363  WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542
            WLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDP
Sbjct: 695  WLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDP 754

Query: 543  RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695
            RQSTHHE+NEEA              LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY
Sbjct: 755  RQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 814

Query: 696  GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875
            GFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT
Sbjct: 815  GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 874

Query: 876  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055
            ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A            
Sbjct: 875  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPC 934

Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235
                VED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLW
Sbjct: 935  THFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLW 994

Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415
            ETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQN
Sbjct: 995  ETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQN 1054

Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595
            TYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV
Sbjct: 1055 TYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1114

Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1775
            MLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD
Sbjct: 1115 MLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1174

Query: 1776 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1955
            GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAY
Sbjct: 1175 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAY 1234

Query: 1956 THTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 2135
            THTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCG
Sbjct: 1235 THTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCG 1294

Query: 2136 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315
            YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLS
Sbjct: 1295 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLS 1354


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1405 bits (3637), Expect = 0.0
 Identities = 693/780 (88%), Positives = 719/780 (92%), Gaps = 9/780 (1%)
 Frame = +3

Query: 3    RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182
            R+LP+A    HW  P + ++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE
Sbjct: 575  RELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRE 634

Query: 183  TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362
            +Q WKETQTMLTEN   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLD
Sbjct: 635  SQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLD 694

Query: 363  WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542
            WLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDP
Sbjct: 695  WLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDP 754

Query: 543  RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695
            RQSTHHE+NEEA              LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY
Sbjct: 755  RQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 814

Query: 696  GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875
            GFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT
Sbjct: 815  GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 874

Query: 876  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055
            ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A            
Sbjct: 875  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPC 934

Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235
                VED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLW
Sbjct: 935  THFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLW 994

Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415
            ETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQN
Sbjct: 995  ETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQN 1054

Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595
            TYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV
Sbjct: 1055 TYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1114

Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1775
            MLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQD
Sbjct: 1115 MLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQD 1174

Query: 1776 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1955
            GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAY
Sbjct: 1175 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAY 1234

Query: 1956 THTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 2135
            THTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCG
Sbjct: 1235 THTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCG 1294

Query: 2136 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315
            YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLS
Sbjct: 1295 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLS 1354


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1405 bits (3637), Expect = 0.0
 Identities = 693/780 (88%), Positives = 719/780 (92%), Gaps = 9/780 (1%)
 Frame = +3

Query: 3    RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182
            R+LP+A    HW  P + ++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE
Sbjct: 575  RELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRE 634

Query: 183  TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362
            +Q WKETQTMLTEN   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLD
Sbjct: 635  SQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLD 694

Query: 363  WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542
            WLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDP
Sbjct: 695  WLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDP 754

Query: 543  RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695
            RQSTHHE+NEEA              LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY
Sbjct: 755  RQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 814

Query: 696  GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875
            GFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT
Sbjct: 815  GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 874

Query: 876  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055
            ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A            
Sbjct: 875  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPC 934

Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235
                VED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLW
Sbjct: 935  THFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLW 994

Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415
            ETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQN
Sbjct: 995  ETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQN 1054

Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595
            TYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV
Sbjct: 1055 TYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1114

Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1775
            MLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQD
Sbjct: 1115 MLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQD 1174

Query: 1776 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1955
            GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAY
Sbjct: 1175 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAY 1234

Query: 1956 THTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 2135
            THTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCG
Sbjct: 1235 THTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCG 1294

Query: 2136 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315
            YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLS
Sbjct: 1295 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLS 1354


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1405 bits (3637), Expect = 0.0
 Identities = 693/780 (88%), Positives = 719/780 (92%), Gaps = 9/780 (1%)
 Frame = +3

Query: 3    RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182
            R+LP+A    HW  P + ++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE
Sbjct: 575  RELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRE 634

Query: 183  TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362
            +Q WKETQTMLTEN   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLD
Sbjct: 635  SQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLD 694

Query: 363  WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542
            WLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDP
Sbjct: 695  WLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDP 754

Query: 543  RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695
            RQSTHHE+NEEA              LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY
Sbjct: 755  RQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 814

Query: 696  GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875
            GFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT
Sbjct: 815  GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 874

Query: 876  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055
            ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A            
Sbjct: 875  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPC 934

Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235
                VED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLW
Sbjct: 935  THFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLW 994

Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415
            ETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQN
Sbjct: 995  ETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQN 1054

Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595
            TYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV
Sbjct: 1055 TYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1114

Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1775
            MLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQD
Sbjct: 1115 MLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQD 1174

Query: 1776 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1955
            GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAY
Sbjct: 1175 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAY 1234

Query: 1956 THTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 2135
            THTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCG
Sbjct: 1235 THTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCG 1294

Query: 2136 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315
            YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLS
Sbjct: 1295 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLS 1354


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1405 bits (3636), Expect = 0.0
 Identities = 692/780 (88%), Positives = 719/780 (92%), Gaps = 9/780 (1%)
 Frame = +3

Query: 3    RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182
            R+LP+A    HW  P + ++L+TLRSLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE
Sbjct: 575  RELPRADGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRE 634

Query: 183  TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362
            +Q WKETQTMLTEN   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLD
Sbjct: 635  SQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLD 694

Query: 363  WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542
            WLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDP
Sbjct: 695  WLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDP 754

Query: 543  RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695
            RQSTHHE+NEEA              LSRYYINATHRNSK LANKLGVYSSNSCPLKVTY
Sbjct: 755  RQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKLLANKLGVYSSNSCPLKVTY 814

Query: 696  GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875
            GFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT
Sbjct: 815  GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 874

Query: 876  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055
            ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A            
Sbjct: 875  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPC 934

Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235
                VED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLW
Sbjct: 935  THFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLW 994

Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415
            ETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQN
Sbjct: 995  ETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQN 1054

Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595
            TYLKKS+SQIKGGERRQSPDFHEH ILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV
Sbjct: 1055 TYLKKSVSQIKGGERRQSPDFHEHHILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1114

Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1775
            MLYGTMARYMRRFRDAL PNNIMINCE+TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD
Sbjct: 1115 MLYGTMARYMRRFRDALRPNNIMINCERTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1174

Query: 1776 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1955
            GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAY
Sbjct: 1175 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAY 1234

Query: 1956 THTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 2135
            THTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCG
Sbjct: 1235 THTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCG 1294

Query: 2136 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315
            YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLS
Sbjct: 1295 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLS 1354


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1401 bits (3626), Expect = 0.0
 Identities = 689/780 (88%), Positives = 718/780 (92%), Gaps = 9/780 (1%)
 Frame = +3

Query: 3    RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182
            R+LP+A    HW  P + ++++TLRS NR+PTPW PDR+RA+AFTSDVKNSRTGKALHRE
Sbjct: 575  RELPRAEGHAHWQGPDMERIISTLRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRE 634

Query: 183  TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362
            +Q WKETQTML EN   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLD
Sbjct: 635  SQVWKETQTMLAENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLD 694

Query: 363  WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542
            WLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFA+THASLELVILTGDP
Sbjct: 695  WLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFALTHASLELVILTGDP 754

Query: 543  RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695
            RQSTHHE+NEEA              LSRYYINATHRNSKFLANKLGVYSSN CPLKVTY
Sbjct: 755  RQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNPCPLKVTY 814

Query: 696  GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875
            GFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT
Sbjct: 815  GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 874

Query: 876  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055
            ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A            
Sbjct: 875  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTATTAEAKPVAPPC 934

Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235
                VED TTTLDDFKE L DKF+REIF   HGHTNCVQ DDPTTQLFSHQQAKDEALLW
Sbjct: 935  THFPVEDGTTTLDDFKEELHDKFDREIFNPTHGHTNCVQTDDPTTQLFSHQQAKDEALLW 994

Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415
            ETI ARLTIS PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQN
Sbjct: 995  ETINARLTISNPEANLAEFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWIRCAEEVQN 1054

Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595
            TYLKKS++QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV
Sbjct: 1055 TYLKKSVAQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1114

Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1775
            MLYGTMARYMRRFR+ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD
Sbjct: 1115 MLYGTMARYMRRFREALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1174

Query: 1776 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1955
            GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAY
Sbjct: 1175 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAY 1234

Query: 1956 THTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 2135
            THTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCG
Sbjct: 1235 THTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCG 1294

Query: 2136 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315
            YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLS
Sbjct: 1295 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLS 1354


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1400 bits (3624), Expect = 0.0
 Identities = 690/780 (88%), Positives = 718/780 (92%), Gaps = 9/780 (1%)
 Frame = +3

Query: 3    RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182
            R+LP+A    HW  P ++++L+TLRSLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE
Sbjct: 575  RELPRADGHAHWQGPDMARILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRE 634

Query: 183  TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362
            +Q WKETQ MLTEN   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLD
Sbjct: 635  SQVWKETQAMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLD 694

Query: 363  WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542
            W KKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDP
Sbjct: 695  WPKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDP 754

Query: 543  RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695
            RQSTHHE+NEEA              LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY
Sbjct: 755  RQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 814

Query: 696  GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875
            GFQP+PG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT
Sbjct: 815  GFQPRPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 874

Query: 876  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055
            ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A            
Sbjct: 875  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPC 934

Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235
                VED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLW
Sbjct: 935  THFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLW 994

Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415
            ETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQN
Sbjct: 995  ETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQN 1054

Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595
            TYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV
Sbjct: 1055 TYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1114

Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1775
            MLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD
Sbjct: 1115 MLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1174

Query: 1776 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1955
            GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGP FDANTECNIAY
Sbjct: 1175 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPAFDANTECNIAY 1234

Query: 1956 THTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 2135
            THTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCG
Sbjct: 1235 THTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCG 1294

Query: 2136 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315
            YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ NYSLDAKLAYSLGDDLQDLLS
Sbjct: 1295 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVDNYSLDAKLAYSLGDDLQDLLS 1354


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score = 1387 bits (3590), Expect = 0.0
 Identities = 683/780 (87%), Positives = 715/780 (91%), Gaps = 9/780 (1%)
 Frame = +3

Query: 3    RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182
            ++LP+ATLP HW    L ++L+TLRSLNRFPTPW PDR RARAFTSDVKNSRTGKALHRE
Sbjct: 580  QELPRATLPAHWQGHNLERILSTLRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKALHRE 639

Query: 183  TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362
            +QTWKETQTMLTEN    LAISVIHGAGGSGKSQALQTLLRQ+  LPIEVVLPTNELRLD
Sbjct: 640  SQTWKETQTMLTENTQTELAISVIHGAGGSGKSQALQTLLRQDHSLPIEVVLPTNELRLD 699

Query: 363  WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542
            WLKKLPHNPPEQFRTFERAFV S SPVVIFDDYGKLPQGY+EAFA+THA+LELVILTGDP
Sbjct: 700  WLKKLPHNPPEQFRTFERAFVSSHSPVVIFDDYGKLPQGYLEAFALTHANLELVILTGDP 759

Query: 543  RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695
            RQSTHHE+NEEA               SRYYINAT RNSKFLANKLGVYS+NSCPL VTY
Sbjct: 760  RQSTHHESNEEALISKLPPATTIYSAFSRYYINATLRNSKFLANKLGVYSANSCPLNVTY 819

Query: 696  GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875
            GFQP PG+HLLVPSLMKKAAFTDAGHKVS+YAGCQGITAP+VQILLDNDTTMCTKEVLYT
Sbjct: 820  GFQPLPGLHLLVPSLMKKAAFTDAGHKVSSYAGCQGITAPKVQILLDNDTTMCTKEVLYT 879

Query: 876  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055
            ALSRAVDSIHFVN+NAQSSAFWEKLEATPYLKTFLSLVREDKI EF A            
Sbjct: 880  ALSRAVDSIHFVNTNAQSSAFWEKLEATPYLKTFLSLVREDKITEFQAPADAPKPVTPPV 939

Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235
                VE+  TTLDDFKE L DKF+REIFT   GHTNCVQ DDPTTQLFSHQQAKDEALLW
Sbjct: 940  THFPVEEPATTLDDFKEELRDKFDREIFTSDRGHTNCVQTDDPTTQLFSHQQAKDEALLW 999

Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415
            E I+ARL ISTPEAN+EEFRAKKDLGDILW NYH+AM LPKEQP+FSEDLW RCAEEVQN
Sbjct: 1000 EMIRARLKISTPEANIEEFRAKKDLGDILWVNYHRAMGLPKEQPDFSEDLWNRCAEEVQN 1059

Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595
            TYLKK+++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAK+IKPGQTIASFQQHAV
Sbjct: 1060 TYLKKTMAQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKEIKPGQTIASFQQHAV 1119

Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1775
            MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD
Sbjct: 1120 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1179

Query: 1776 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1955
            GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY
Sbjct: 1180 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1239

Query: 1956 THTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 2135
            THTRF+IPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG
Sbjct: 1240 THTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 1299

Query: 2136 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315
            YLITPKGLIKDPLKLHASLELAKAQKKAGV+DAI+NV+ANYSLDAKLAYSLGDDLQDLLS
Sbjct: 1300 YLITPKGLIKDPLKLHASLELAKAQKKAGVRDAITNVVANYSLDAKLAYSLGDDLQDLLS 1359


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 711

 Score = 1251 bits (3237), Expect = 0.0
 Identities = 614/685 (89%), Positives = 639/685 (93%), Gaps = 9/685 (1%)
 Frame = +3

Query: 288  LQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGK 467
            LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGK
Sbjct: 1    LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60

Query: 468  LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXXXXX---------LSRYYINAT 620
            LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEA              LSRYYINAT
Sbjct: 61   LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINAT 120

Query: 621  HRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQ 800
            HRNSKFLANKLGVYSSNSCPLKVTYG QPQPG+HLLVPSLMKKAAFTDAGHKVSTYAGCQ
Sbjct: 121  HRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQ 180

Query: 801  GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFL 980
            GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFL
Sbjct: 181  GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFL 240

Query: 981  SLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 1160
            SLVRED++ EFSA                VED TTTLDDF+E L DKF+REIF +AHGHT
Sbjct: 241  SLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGHT 300

Query: 1161 NCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHK 1340
            NCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAKKDLGDILW NY K
Sbjct: 301  NCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLGDILWENYRK 360

Query: 1341 AMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWV 1520
            AMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSPDFHEHQILIFLKSQWV
Sbjct: 361  AMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFLKSQWV 420

Query: 1521 KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSR 1700
            KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSR
Sbjct: 421  KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSR 480

Query: 1701 WVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL 1880
            WVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL
Sbjct: 481  WVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL 540

Query: 1881 GTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALL 2060
            GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDDCAI+QVCPEKPSF+LL
Sbjct: 541  GTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDDCAISQVCPEKPSFSLL 600

Query: 2061 KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIS 2240
            KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+
Sbjct: 601  KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIT 660

Query: 2241 NVIANYSLDAKLAYSLGDDLQDLLS 2315
            NV+ANYSLDAKLAYSLGDDLQDLLS
Sbjct: 661  NVVANYSLDAKLAYSLGDDLQDLLS 685


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score = 1219 bits (3154), Expect = 0.0
 Identities = 601/779 (77%), Positives = 664/779 (85%), Gaps = 10/779 (1%)
 Frame = +3

Query: 9    LPKATLPEHWNEPG-LSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRET 185
            LP  T  E+ +      KV+ TL+ LNR PTPW PDR RARA+ SD+KNSRTGKALH+E+
Sbjct: 557  LPHETFDEYDSTSSPFDKVVITLKQLNRSPTPWTPDRLRARAYASDIKNSRTGKALHKES 616

Query: 186  QTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDW 365
            Q WKETQT LTE     L +SVIHGAGGSGKSQALQT+LR +PDLP+EVVLPTNELR DW
Sbjct: 617  QNWKETQTRLTETSETRLGLSVIHGAGGSGKSQALQTMLRNHPDLPVEVVLPTNELRXDW 676

Query: 366  LKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPR 545
            L+KLPHNPPEQFRTFERAFV S +PVVIFDDYGKLPQG++EAFA+    L+L ILTGDPR
Sbjct: 677  LRKLPHNPPEQFRTFERAFVSSTAPVVIFDDYGKLPQGFLEAFALCRPGLKLAILTGDPR 736

Query: 546  QSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYG 698
            QSTHHE+NE+A              L RYYINATHRN K LANKLGVYSSN  PL V+YG
Sbjct: 737  QSTHHESNEQAMIAQLEPATKIFSALCRYYINATHRNVKELANKLGVYSSNPSPLHVSYG 796

Query: 699  FQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTA 878
            F+P+PG+HLLVPSL+KKAAF DAGHKVSTYAGCQGITAP+VQILLD+DTTMC+ EVLYTA
Sbjct: 797  FRPEPGLHLLVPSLVKKAAFADAGHKVSTYAGCQGITAPKVQILLDSDTTMCSSEVLYTA 856

Query: 879  LSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXX 1058
            LSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFLSLVRE K+EEF+A             
Sbjct: 857  LSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFLSLVREHKLEEFTAVEDPPQEVAPPVT 916

Query: 1059 XXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWE 1238
               VE+ + TL   ++SL+DK++REI    HG TNCVQ +D T QLFSHQQAKDEALLWE
Sbjct: 917  HFPVENASHTLGLIQDSLADKYDREILNTNHGFTNCVQTEDLTVQLFSHQQAKDEALLWE 976

Query: 1239 TIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNT 1418
            TI ARL +STPEANL EF AKKDLGD+LW NYH+AMKLPKEQP+FS +LW RCA EVQ T
Sbjct: 977  TIDARLRLSTPEANLAEFHAKKDLGDVLWENYHRAMKLPKEQPDFSPELWERCAAEVQQT 1036

Query: 1419 YLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVM 1598
            YL KS+ QIKGGERRQSPDF E++ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVM
Sbjct: 1037 YLSKSLQQIKGGERRQSPDFPENKILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQAAVM 1096

Query: 1599 LYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDG 1778
            LYGTMARYMRR+RDAL PNNIMINCE+TP DLSRWV N+WDF+KP YANDFTAFDQSQDG
Sbjct: 1097 LYGTMARYMRRYRDALGPNNIMINCERTPADLSRWVRNHWDFTKPXYANDFTAFDQSQDG 1156

Query: 1779 AMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYT 1958
            AMLQFEILKAK+FNLPEWVIEGYLDIKL+P+IF GTL+IMRLTGEGPTFDANTECNIAYT
Sbjct: 1157 AMLQFEILKAKFFNLPEWVIEGYLDIKLTPQIFTGTLAIMRLTGEGPTFDANTECNIAYT 1216

Query: 1959 HTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGY 2138
            HTRF IP+  AQ+YAGDDCAIA+VC EKPSFALLKNRIALQAKPAY PQ RG WAEFCGY
Sbjct: 1217 HTRFHIPDHVAQLYAGDDCAIAEVCQEKPSFALLKNRIALQAKPAYAPQTRGAWAEFCGY 1276

Query: 2139 LITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315
            LITPKGLIKDPLKLH+SLELAKA +K G KDAI+NV+ANYSLDAK+AYSLGDDLQDLLS
Sbjct: 1277 LITPKGLIKDPLKLHSSLELAKALRKQGRKDAITNVVANYSLDAKMAYSLGDDLQDLLS 1335


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  994 bits (2569), Expect = 0.0
 Identities = 500/765 (65%), Positives = 575/765 (75%), Gaps = 9/765 (1%)
 Frame = +3

Query: 48   GLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENV 227
            G   V+  L  L+R PTPW P   RAR++TSD+KN RTG  L +E+ TWKETQT+  E +
Sbjct: 597  GHELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 656

Query: 228  TANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRT 407
               + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P   PE+ +T
Sbjct: 657  EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKT 716

Query: 408  FERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXXX 587
            +ERAF    SPVV+FDDYGKLP GYIEA+      +ELVILTGD RQSTHHE NE+A   
Sbjct: 717  YERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMIS 776

Query: 588  XX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSL 740
                       L RYYINATHRN + LANKL VYS      K+T GFQP   +HLLVPSL
Sbjct: 777  QLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSL 836

Query: 741  MKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSN 920
            +KK+A+ + GHKVSTYAGCQGITAP++QILLDNDT MC+KEVLYTALSRAV SIHF+N+ 
Sbjct: 837  LKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTG 896

Query: 921  AQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDF 1100
               S+FWEKLEATPYLK FLS VRE+ I                     VE+ +  L  +
Sbjct: 897  PTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPNADPRPDPEPKTHFPVENTSCALGAY 956

Query: 1101 KESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN 1280
             E + +KFEREIFTE  GHTNCVQ  +P  QLF HQQAKDEALLWETIKARLTIS+PEAN
Sbjct: 957  MEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEAN 1016

Query: 1281 LEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGER 1460
             EEF  KKD+GDILW +Y KAM LP+E   FSEDLW   A EVQNTYL K ++ +K GER
Sbjct: 1017 WEEFYRKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGER 1076

Query: 1461 RQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRD 1640
            RQSPDF +HQIL+FLKSQWVKKMEKLG  KIK GQTIASFQQHAVMLYGTMARYMRRFR+
Sbjct: 1077 RQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFRE 1136

Query: 1641 ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFN 1820
             L PN+I INCE TP+DLSR++ NYWDF   SYANDFTAFDQSQDGAMLQFEILKAK+FN
Sbjct: 1137 VLGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDGAMLQFEILKAKHFN 1196

Query: 1821 LPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIY 2000
            +PE +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+Y
Sbjct: 1197 IPEEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLY 1256

Query: 2001 AGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKL 2180
            AGDD AIA V PE+PSF L+   +AL+AKP Y PQ  G WAEFCGYLITPKGLIKDP KL
Sbjct: 1257 AGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKL 1316

Query: 2181 HASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315
             ASL+L +A   +G K  +     NY  D  LAY+L D L ++LS
Sbjct: 1317 FASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILS 1359


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  990 bits (2560), Expect = 0.0
 Identities = 499/765 (65%), Positives = 574/765 (75%), Gaps = 9/765 (1%)
 Frame = +3

Query: 48   GLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENV 227
            G   V+  L  L+R PTPW P   RAR++TSD+KN RTG  L +E+ TWKETQT+  E +
Sbjct: 597  GHELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 656

Query: 228  TANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRT 407
               + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P   PE+ +T
Sbjct: 657  EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKT 716

Query: 408  FERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXXX 587
            +ERAF    SPVV+FDDYGKLP GYIEA+      +ELVILTGD RQSTHHE NE+A   
Sbjct: 717  YERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMIS 776

Query: 588  XX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSL 740
                       L RYYINATHRN + LANKL VYS      K+T GFQP   +HLLVPSL
Sbjct: 777  QLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSL 836

Query: 741  MKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSN 920
            +KK+A+ + GHKVSTYAGCQGITAP++QILLDNDT MC+KEVLYTALSRAV SIHF+N+ 
Sbjct: 837  LKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTG 896

Query: 921  AQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDF 1100
               S+FWEKLEATPYLK FLS VRE+ I                     VE+ +  L  +
Sbjct: 897  PTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPKTHFPVENTSCALGAY 956

Query: 1101 KESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN 1280
             E + +KFEREIFTE  GHTNCVQ  +P  QLF HQQAKDEALLWETIKARLTIS+PEAN
Sbjct: 957  MEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEAN 1016

Query: 1281 LEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGER 1460
             EEF  KKD+GDILW +Y KAM LP+E   FSEDLW   A EVQNTYL K ++ +K GER
Sbjct: 1017 WEEFYKKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGER 1076

Query: 1461 RQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRD 1640
            RQSPDF +HQIL+FLKSQWVKKMEKLG  KIK GQTIASFQQHAVMLYGTMARYMRRFR+
Sbjct: 1077 RQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFRE 1136

Query: 1641 ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFN 1820
            AL PN+I INCE TP+DLSR++ NYWDF   SYANDFTAFDQSQD AMLQFEILKAK+FN
Sbjct: 1137 ALGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDAAMLQFEILKAKHFN 1196

Query: 1821 LPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIY 2000
            +P  +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+Y
Sbjct: 1197 IPGEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLY 1256

Query: 2001 AGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKL 2180
            AGDD AIA V PE+PSF L+   +AL+AKP Y PQ  G WAEFCGYLITPKGLIKDP KL
Sbjct: 1257 AGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKL 1316

Query: 2181 HASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315
             ASL+L +A   +G K  +     NY  D  LAY+L D L ++LS
Sbjct: 1317 FASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILS 1359


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  986 bits (2548), Expect = 0.0
 Identities = 498/781 (63%), Positives = 589/781 (75%), Gaps = 14/781 (1%)
 Frame = +3

Query: 15   KATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTW 194
            K  +P H       ++L  L++L+R PT W PD  RA++FTSD+KN RTGK L +E+Q+W
Sbjct: 654  KTGIPVHRETKAPQELLDLLKALSRMPTLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSW 713

Query: 195  KETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKK 374
            KE QT+  ++    + +SVIHGAGGSGKS ALQ LLR +P+LPI+V+LPTNELR+DWL K
Sbjct: 714  KEAQTLKVDHNIRPVPLSVIHGAGGSGKSAALQDLLRDHPELPIQVILPTNELRMDWLSK 773

Query: 375  LPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQST 554
            LP N PE FRTFE+A++ + +P +I DDYGKLPQGY+EAFA+TH ++EL++LTGD +QS 
Sbjct: 774  LPRNRPENFRTFEKAYLQTNAPSIIMDDYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSV 833

Query: 555  HHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP 707
            HHE NE+A               SRYYINATHRN+K LAN LGVYS N+  LK+T+GFQP
Sbjct: 834  HHETNEQAMIAQLEPSTQIFSQFSRYYINATHRNAKKLANMLGVYSDNNKELKITHGFQP 893

Query: 708  QPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSR 887
               +HLLVPSL+KKAAF++AGHK STYAGCQGITA ++QILLD++T MC++EVLYTALSR
Sbjct: 894  IKDIHLLVPSLIKKAAFSEAGHKTSTYAGCQGITARKLQILLDSNTPMCSQEVLYTALSR 953

Query: 888  AVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXX 1067
            AVDSIHF+N+   SS FWEKLEATPYLKTFLS+VREDKI E+                  
Sbjct: 954  AVDSIHFINTAPTSSNFWEKLEATPYLKTFLSMVREDKILEWRPKEPEPAKEEPPKTHFP 1013

Query: 1068 VEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIK 1247
            VE+  T L++F E L+ K EREIF E+HGHTNCVQ D+   Q  SHQQAKDEALLWETIK
Sbjct: 1014 VENGNTILEEFTEELAQKHEREIFNESHGHTNCVQTDNKIIQTLSHQQAKDEALLWETIK 1073

Query: 1248 ARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLK 1427
            ARL IS  + N  EF  KKD+GDILW NY +AM LP++   F E+LW   A E+Q+TYL 
Sbjct: 1074 ARLVISHKQHNWTEFVKKKDIGDILWLNYKRAMHLPEDPIPF-EELWELAAREIQHTYLS 1132

Query: 1428 KSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYG 1607
            KS   +K GERRQSPDF E  ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYG
Sbjct: 1133 KSTQMLKNGERRQSPDFGEKDILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYG 1192

Query: 1608 TMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAML 1787
            TMARYMRR RD   P +IMINCE+TP DLS W LNYW+F KPSYANDFTAFDQSQDGAML
Sbjct: 1193 TMARYMRRIRDIYMPEHIMINCERTPTDLSYWALNYWNFDKPSYANDFTAFDQSQDGAML 1252

Query: 1788 QFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTR 1967
            QFEILKAK+ N+PEWV+EGYLDIKL  +IFLGTLSIMRLTGE  TFDANTECNIAYTHTR
Sbjct: 1253 QFEILKAKHHNIPEWVLEGYLDIKLDSRIFLGTLSIMRLTGEYQTFDANTECNIAYTHTR 1312

Query: 1968 FEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQ-----AKPAYTPQERGQWAEFC 2132
            F+IPEG AQ     D A+   C EKPSF L+++ ++L+      KP    Q  G+WAEFC
Sbjct: 1313 FDIPEGVAQ-----DSAMDATCLEKPSFKLIESELSLKLYAGDCKPCLKAQIPGEWAEFC 1367

Query: 2133 GYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLL 2312
            GYLITPKGLIKDPLKL AS  LAK + K      + N + NY+ D KLAY LGDDL +LL
Sbjct: 1368 GYLITPKGLIKDPLKLAASFRLAKERGKR----ELDNCLENYARDMKLAYDLGDDLLELL 1423

Query: 2313 S 2315
            +
Sbjct: 1424 T 1424


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  877 bits (2265), Expect = 0.0
 Identities = 436/773 (56%), Positives = 554/773 (71%), Gaps = 10/773 (1%)
 Frame = +3

Query: 21   TLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKE 200
            +LP++        +L  L+  +R+P P+  D  + RAF SDVKN+RTG    ++   WKE
Sbjct: 876  SLPKYEGRLPEPHLLEQLKEASRYPCPYRIDHKQGRAFASDVKNNRTGSLTTKQPDEWKE 935

Query: 201  TQTMLTENVTAN-LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKL 377
              T + E+     +A++VIHGAGGSGKSQ LQ  L +NP+  I  +LPTNELR DWL KL
Sbjct: 936  AFTRMAESPEQRTVALTVIHGAGGSGKSQLLQRYLMENPECKINTILPTNELRNDWLTKL 995

Query: 378  PHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 557
            P  P    +TFERA +  + PVVIFDDY KLP GYI+AF   H ++E  ILTGDPRQST 
Sbjct: 996  PKMPLTAIQTFERALISPQKPVVIFDDYSKLPAGYIDAFLSLHKNVEWAILTGDPRQSTF 1055

Query: 558  HEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 710
            HE+NE+A               SRYYINATHRN + LA  LGVYS  +    ++   +P+
Sbjct: 1056 HESNEQAMINHLSKSTEHFSQFSRYYINATHRNKQDLARFLGVYSEKTGLTSISMSSRPE 1115

Query: 711  PGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRA 890
            P  HLLVPSL+KK ++T+ G+K STYAGCQGITA RVQ+LLD DTT+C+ +VLYTALSRA
Sbjct: 1116 PDWHLLVPSLIKKRSYTEMGYKTSTYAGCQGITADRVQVLLDTDTTLCSDQVLYTALSRA 1175

Query: 891  VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXV 1070
            V ++HF+N++A SSAFW+KL +TPYLKTFLS +RED++ E                   V
Sbjct: 1176 VHAVHFINTSATSSAFWDKLNSTPYLKTFLSTLREDRLREEGPKPETPEEPKPATTHFPV 1235

Query: 1071 EDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKA 1250
            E++  +L+D  E L +K ERE+++  HG++NCVQ DDP  QLFSHQQAKD+ LLW TI+A
Sbjct: 1236 ENENLSLEDKVEELLEKHERELYSSDHGYSNCVQTDDPVVQLFSHQQAKDQTLLWATIEA 1295

Query: 1251 RLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKK 1430
            RL IS P+AN+EEFR KK++GD+LW NY +AMKLP +  EFS +LW  CAEEVQ TYL K
Sbjct: 1296 RLKISNPKANMEEFRMKKNVGDVLWLNYKRAMKLPDKPIEFSHELWHACAEEVQKTYLSK 1355

Query: 1431 SISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT 1610
             ++ IK GE RQSPDF +H I +FLKSQWVKK+EKLGA KIKPGQTIASFQQ  VMLYGT
Sbjct: 1356 PLNMIKNGENRQSPDFDKHTISLFLKSQWVKKLEKLGAPKIKPGQTIASFQQATVMLYGT 1415

Query: 1611 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 1790
            MARYMRR R A  P NI +NCE+TPQ L+ ++ + W F +P+YANDFT FDQSQDGAMLQ
Sbjct: 1416 MARYMRRIRQAFQPPNIQLNCEQTPQQLTTFIKDQWSFDQPAYANDFTQFDQSQDGAMLQ 1475

Query: 1791 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 1970
            FE+LKAK+ N+PE +I+GY+DIK + K+F G L+IMRLTGEGPTFDANTECNIA+ HTRF
Sbjct: 1476 FEVLKAKHHNIPEAIIQGYIDIKTNAKVFTGVLAIMRLTGEGPTFDANTECNIAFNHTRF 1535

Query: 1971 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 2150
             I + TAQ+YAGDD A +++  EK SF  +  ++AL +KP +  Q++G+WAEFCGY ITP
Sbjct: 1536 HISDDTAQLYAGDDTAFSKIPIEKVSFQGVAKQLALTSKPLFYKQKKGEWAEFCGYSITP 1595

Query: 2151 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2309
             GLIK+P KL A+L LA  Q K  +KD ++    +YS D  LAY   D+L ++
Sbjct: 1596 LGLIKEPKKLQANLTLAIKQNK--IKDTVN----SYSQDVALAYQHKDELYEI 1642


>gb|AFM77886.1| replicase [Hosta virus X]
          Length = 1473

 Score =  875 bits (2261), Expect = 0.0
 Identities = 448/771 (58%), Positives = 543/771 (70%), Gaps = 12/771 (1%)
 Frame = +3

Query: 39   NEPGLSK-VLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTML 215
            N   +SK +L TLRS+ R PT W PD +RARA+TSD+KN RTG A+H   Q WKET   +
Sbjct: 664  NPSSVSKEILETLRSVARAPTSWKPDASRARAYTSDIKNRRTGAAVHMAPQAWKETMDFI 723

Query: 216  TENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIE--VVLPTNELRLDWLKKLPHNP 389
             EN    L ISVIHGAGGSGKS+ LQ +L +   L  E  VV PTNELR DW+ KLP + 
Sbjct: 724  AENAERTLHISVIHGAGGSGKSRCLQEMLNKFHFLFDETLVVCPTNELRRDWIDKLPLSE 783

Query: 390  PEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEAN 569
            P    TFERA +      VIFDDY KLP G+IEA+++   ++ELVILTGD +Q++HHE+N
Sbjct: 784  PGSVLTFERALMNPAKGTVIFDDYTKLPAGFIEAYSICQPNVELVILTGDAKQASHHESN 843

Query: 570  EEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMH 722
            + A                RYY+NATHRN + LAN LG+YS     LKVT+     P MH
Sbjct: 844  DNAMIAGLDPAALEFSKFCRYYLNATHRNPRNLANALGIYSEKPGNLKVTFTNHLLPEMH 903

Query: 723  LLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSI 902
            +LVPSL+KKA   + GHK STYAGCQG+T  +VQI LD++TT+C+ EVLYTALSRAV+ I
Sbjct: 904  ILVPSLLKKATLEELGHKCSTYAGCQGVTLSKVQIYLDSNTTLCSNEVLYTALSRAVEQI 963

Query: 903  HFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKT 1082
            +FVNS   +  FW KLEATPYLKTFL L RE+KI E +                 VE   
Sbjct: 964  NFVNSGPFNGPFWAKLEATPYLKTFLRLTREEKINEITPEEPKPKEPEPPKTHFPVETSA 1023

Query: 1083 TTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTI 1262
                   E + +K  REI+ + HGHTNCVQ D+P  Q+F+HQQAKDEAL WETI+ARL I
Sbjct: 1024 HLYSSITEEMPEKHAREIYNKTHGHTNCVQTDEPLVQMFAHQQAKDEALFWETIEARLRI 1083

Query: 1263 STPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQ 1442
            +T EAN++E   K+D+GD+L+  YHKAM LPK+   F  DLW  CA+EVQ TYL K I+ 
Sbjct: 1084 TTSEANVQELNEKRDIGDLLFHAYHKAMGLPKDPIPFENDLWETCAQEVQQTYLSKPINL 1143

Query: 1443 IKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARY 1622
            IK GE+RQ PDF ++ I++FLKSQWVKKMEKLGA  IKPGQTIASF Q  VMLYGTMARY
Sbjct: 1144 IKNGEKRQGPDFDKNAIMLFLKSQWVKKMEKLGAPTIKPGQTIASFHQITVMLYGTMARY 1203

Query: 1623 MRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEIL 1802
            MRR RD   P +I+INCEKTP  +S +V   WDFS  +YANDFTAFDQSQDGAMLQFEI+
Sbjct: 1204 MRRIRDRFCPKHILINCEKTPTQISDFVKAQWDFSDFAYANDFTAFDQSQDGAMLQFEII 1263

Query: 1803 KAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPE 1982
            KAK+ N+PE +I GY+DIK + KIFLGTL+IMRLTGEGPTFDANTECNIAYTH RF +PE
Sbjct: 1264 KAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGPTFDANTECNIAYTHLRFNVPE 1323

Query: 1983 GTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLI 2162
              AQ+YAGDD A+++VCPEK SF    +R+ L++KP   PQ +G WAEFCG LITP+G+I
Sbjct: 1324 NVAQVYAGDDSALSKVCPEKDSFKQFADRLTLKSKPQVFPQTQGAWAEFCGLLITPRGII 1383

Query: 2163 KDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315
            KDP+KLHAS  LA    K G    I   + +Y  D KL+Y LGD LQ+LLS
Sbjct: 1384 KDPVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLKLSYDLGDHLQELLS 1430


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
            RecName: Full=RNA replication protein; AltName: Full=176
            kDa protein; AltName: Full=ORF1 protein; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
            protein product [Papaya mosaic virus]
            gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
            virus]
          Length = 1547

 Score =  874 bits (2259), Expect = 0.0
 Identities = 445/764 (58%), Positives = 547/764 (71%), Gaps = 12/764 (1%)
 Frame = +3

Query: 60   VLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANL 239
            V  TL  L R PTP+ P+  RARA+TSDVKN R G  L ++ + W      L E     L
Sbjct: 756  VYKTLDGLARAPTPYSPNPIRARAYTSDVKNCRIGALLRQQGKEWGCRFDALVEAGKREL 815

Query: 240  AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 419
            AISVIHGAGGSGKSQALQTL++ NP+L I VVLPTNELRLDWL+KLP  P E+F+TFE+A
Sbjct: 816  AISVIHGAGGSGKSQALQTLIKDNPELDITVVLPTNELRLDWLRKLPKAPQEKFKTFEKA 875

Query: 420  FVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXXXXX-- 593
             +   +P+VIFDDYGKLP GY+EAF +  ++++L+ILTGD +QS HHE+NE A       
Sbjct: 876  LLAPPTPIVIFDDYGKLPAGYVEAFCLYFSTVQLIILTGDCKQSVHHESNENATTSSIEP 935

Query: 594  -------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKA 752
                   L RYYINATHRN K LANKLGVYS  +   +VT+G  P PG+H+LVPSL KK 
Sbjct: 936  LVKEASELCRYYINATHRNKKDLANKLGVYSEKTGLTEVTHGTTPIPGLHMLVPSLYKKQ 995

Query: 753  AFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 932
            AF++ GHKVSTYAGCQGITAP++QILL  +T++C++EVLYTALSRAV SIHFVN++  + 
Sbjct: 996  AFSEMGHKVSTYAGCQGITAPKIQILLTEETSLCSREVLYTALSRAVHSIHFVNASPNNQ 1055

Query: 933  AFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESL 1112
            AFW+KLE TPYLK FLS +RE+  +                     ED     ++  E +
Sbjct: 1056 AFWKKLECTPYLKAFLSTLREEVAQPIEEKKAEPTPVEPPRTHIAKEDAMVEYENVIEKM 1115

Query: 1113 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1292
             +K EREIF+E HGH+NCVQ +DP  Q+FSHQQAKD+ LLW TI+ARL IS P+AN +E+
Sbjct: 1116 PEKHEREIFSEKHGHSNCVQTEDPFIQMFSHQQAKDDTLLWATIEARLVISNPKANWQEY 1175

Query: 1293 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 1472
              K+ +G++L+ +Y +AM LPK    F EDLW     EVQ TYL K  + IK G  RQSP
Sbjct: 1176 LEKRPVGEVLFESYKRAMHLPKMPIPFEEDLWNSSMHEVQKTYLSKPENMIKNGMARQSP 1235

Query: 1473 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 1652
            D+  + I +FLKSQWVKKMEKLGA KIKPGQTIASF Q  VML+GTMARYMRR R+   P
Sbjct: 1236 DYDPNVISLFLKSQWVKKMEKLGAIKIKPGQTIASFHQATVMLFGTMARYMRRMREVFQP 1295

Query: 1653 NNIMINCEKTPQDLSRWVL---NYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNL 1823
             +I INCE TP+DLS W      +W F  PS ANDFTAFDQSQDGAMLQFEILKA++ ++
Sbjct: 1296 AHIRINCEMTPEDLSSWAAGEGGHWKFKGPSLANDFTAFDQSQDGAMLQFEILKARHHSI 1355

Query: 1824 PEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYA 2003
            PE +++ YL IK + KIFLGTL+IMRLTGEGPTFDANTECNIA+THT+F IPEGTAQ+YA
Sbjct: 1356 PEDILDAYLTIKTNSKIFLGTLAIMRLTGEGPTFDANTECNIAFTHTKFNIPEGTAQLYA 1415

Query: 2004 GDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLH 2183
            GDD AI  +   +PSF +++ ++ L++KP    Q++G WAEFCG+ ITPKGLIKDP KLH
Sbjct: 1416 GDDSAIDGLPALRPSFKMIEQKLTLRSKPQVALQQKGDWAEFCGFRITPKGLIKDPKKLH 1475

Query: 2184 ASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315
            AS  L K  KK  VK    NV+ +Y LD  LAY   D L +LLS
Sbjct: 1476 ASWMLEK--KKGNVK----NVLRSYELDLALAYQHKDSLHELLS 1513


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  871 bits (2251), Expect = 0.0
 Identities = 451/783 (57%), Positives = 547/783 (69%), Gaps = 12/783 (1%)
 Frame = +3

Query: 3    RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182
            + LPK + PE  N P L K+L       R PTP+ P   RA+A++SDVKNSR G  L ++
Sbjct: 736  KSLPKCS-PEKVN-PSLLKMLNDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQ 790

Query: 183  TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362
             + W      L EN    LAISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLD
Sbjct: 791  GKDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLD 850

Query: 363  WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542
            WLKKLP  P +Q +TFE+A +    P VIFDDYGKLP GYIEAF+   +S+EL++LTGD 
Sbjct: 851  WLKKLPTFPADQIKTFEKALLAPIKPTVIFDDYGKLPAGYIEAFSCYMSSVELLVLTGDS 910

Query: 543  RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695
            +QS HHE+NE A               SRYYINATHRN + LANKLGVYS  +    +T 
Sbjct: 911  KQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQ 970

Query: 696  GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875
            G  P PG+HLLVPSL KK AF++ GHKVSTYAGCQG+TAPRVQILL  +T+MC++EV+YT
Sbjct: 971  GNHPVPGLHLLVPSLYKKEAFSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYT 1030

Query: 876  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055
            ALSRAV SIHFVN    + AFW KLE+TPYLK FLS +RED                   
Sbjct: 1031 ALSRAVHSIHFVNCGPNNQAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPK 1090

Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235
                V+      +D  + + +K EREIF+E HGH+NCVQ +D   Q+FSHQQAKDE LLW
Sbjct: 1091 THIPVDSAMPIYEDLLDQMPEKHEREIFSERHGHSNCVQTEDTFVQMFSHQQAKDETLLW 1150

Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415
             TI+ARL IS P+AN +EF  K+ +GD+L+  Y +AM LP E   F   LW  C  EVQ 
Sbjct: 1151 ATIEARLVISNPKANWQEFMEKRPIGDVLFGFYREAMGLPTEPIAFEPQLWESCIHEVQR 1210

Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595
            TYL K I+ +K G+ RQSPD+  + I +FLKSQWVKKMEKLGA KIKPGQTIASF Q  V
Sbjct: 1211 TYLAKPINMLKNGQARQSPDYDPNMISLFLKSQWVKKMEKLGALKIKPGQTIASFHQATV 1270

Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL---NYWDFSKPSYANDFTAFDQ 1766
            ML+GTMARYMRR R+   P NI INCE TP+DL+ W +     W F+ PS ANDFTAFDQ
Sbjct: 1271 MLFGTMARYMRRMREIFQPKNIAINCEMTPEDLTDWAVGSAGQWKFAGPSLANDFTAFDQ 1330

Query: 1767 SQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECN 1946
            SQDGAMLQFE+LKAK+ ++PE V++ YL IK + KIFLGTL+IMRLTGEGPTFDANTECN
Sbjct: 1331 SQDGAMLQFEVLKAKHHSIPEDVLDAYLHIKTNSKIFLGTLTIMRLTGEGPTFDANTECN 1390

Query: 1947 IAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAE 2126
            IA+TH +F+IP+GTAQ+YAGDD AI    P + SF L++ ++ L++KPA   QE+G WAE
Sbjct: 1391 IAFTHAKFQIPKGTAQLYAGDDSAIDGNPPVRESFRLVEQKLKLRSKPAIAMQEKGDWAE 1450

Query: 2127 FCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQD 2306
            FCGY ITPKG IKDP KLHASL L   +KK G    + NV+ +Y LD  LAY   D+L +
Sbjct: 1451 FCGYRITPKGFIKDPKKLHASLVL---EKKRG---NLKNVLRSYELDLALAYQHRDELHE 1504

Query: 2307 LLS 2315
            LLS
Sbjct: 1505 LLS 1507


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
            [Allium virus X]
          Length = 1701

 Score =  871 bits (2251), Expect = 0.0
 Identities = 442/773 (57%), Positives = 545/773 (70%), Gaps = 9/773 (1%)
 Frame = +3

Query: 24   LPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKET 203
            LPE  +    + +LTT+   +R P  +  + +RA+A+ SDV+NSRTG  L  +   WKE 
Sbjct: 913  LPEDTDTKPFTDLLTTM---HRMPCAYKVNNSRAKAYASDVENSRTGLLLRSQPDHWKEA 969

Query: 204  QTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPH 383
             TM  E     +A+SVIHGAGGSGKS ALQ L+R+NP+L   VV PTNELRLDWL KLP 
Sbjct: 970  LTMQAETADHTIALSVIHGAGGSGKSHALQQLIRENPELNFLVVCPTNELRLDWLAKLPK 1029

Query: 384  NPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHE 563
                + +TFE+A   S +  +IF DY KLP GYIE +     +  L ILTGDPRQS++HE
Sbjct: 1030 VELHRIKTFEKALADSTAATIIFGDYSKLPAGYIECYLAARPTATLAILTGDPRQSSYHE 1089

Query: 564  ANEEAXXXXXLS---------RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG 716
            +NE A                RYYINATHRN + LA  LGVYS  +    ++   +P   
Sbjct: 1090 SNEGAMISQLAPSTSEFGQYCRYYINATHRNKQDLARMLGVYSERTGLTSISMSSRPLTD 1149

Query: 717  MHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVD 896
             HLLVPS++KK  + + G+K STYAGCQGITAPR+QILLD DTT+C  EVLYTALSRAV 
Sbjct: 1150 THLLVPSIIKKRTYMELGYKTSTYAGCQGITAPRLQILLDCDTTLCADEVLYTALSRAVH 1209

Query: 897  SIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVED 1076
             IHF+N+ A S AFW+KL ATPYLKTFL   RE++++E                   VE+
Sbjct: 1210 GIHFINTGATSGAFWDKLNATPYLKTFLDFTREERLKESQPREQEPTEPEGPTTHFPVEN 1269

Query: 1077 KTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARL 1256
            +   L++  E L +K +REI    HGHTNCVQ +D   QLFSHQQAKD+ALLW TI+ARL
Sbjct: 1270 EKFVLEEQVEELLEKHDREILRPDHGHTNCVQTEDAVIQLFSHQQAKDQALLWATIEARL 1329

Query: 1257 TISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSI 1436
             IS P+AN+ EF AKK++GD+L+ +YH+AMKLP +   F EDLW  CA+EVQ TYL K I
Sbjct: 1330 KISNPKANIAEFNAKKEIGDVLFEHYHQAMKLPDKPIPFMEDLWVACAQEVQGTYLSKPI 1389

Query: 1437 SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMA 1616
            + +K GE RQSPDF ++ I +FLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMA
Sbjct: 1390 NMLKNGEYRQSPDFDKNTIALFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTMA 1449

Query: 1617 RYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFE 1796
            RYMRR R+A  P  IMINCEK PQ LS W+ NYW F+  +YANDFT FDQSQDGAMLQFE
Sbjct: 1450 RYMRRMREAFQPPEIMINCEKDPQTLSHWIQNYWKFNSYAYANDFTQFDQSQDGAMLQFE 1509

Query: 1797 ILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEI 1976
            ILKAK+ ++PEWV+EGYLDIK + K+F G LSIMRLTGEGPTFDANTECNIAYTH RF++
Sbjct: 1510 ILKAKHHSIPEWVLEGYLDIKTNAKVFSGVLSIMRLTGEGPTFDANTECNIAYTHLRFDV 1569

Query: 1977 PEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKG 2156
            P+GTAQ+YAGDD A++ + PE+PSFA  K ++ L +KPA   Q+RG WAEFCGYLITP G
Sbjct: 1570 PKGTAQLYAGDDSALSCLPPERPSFADFKQQLTLTSKPALFAQKRGFWAEFCGYLITPLG 1629

Query: 2157 LIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315
            ++KDP KL A++ LA+ Q K      +     +++LD KLAY   D L ++LS
Sbjct: 1630 IMKDPAKLAATVVLAQKQNK------LHECWRSHALDLKLAYVHRDALTEVLS 1676


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
            replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  869 bits (2246), Expect = 0.0
 Identities = 449/783 (57%), Positives = 543/783 (69%), Gaps = 12/783 (1%)
 Frame = +3

Query: 3    RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182
            + LPK + PE  N P L K+L    S  R PTP+ P   RA+A++SDVKNSR G  L ++
Sbjct: 736  KSLPKCS-PEKVN-PSLLKMLN---SQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQ 790

Query: 183  TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362
             + W      L EN    LAISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLD
Sbjct: 791  GKDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLD 850

Query: 363  WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542
            WLKKLP  P +Q +TFE+A +    P VIFDDYGKLP GYIEAF+   +S EL++LTGD 
Sbjct: 851  WLKKLPTFPADQIKTFEKALLAPTKPTVIFDDYGKLPAGYIEAFSFYMSSAELLVLTGDS 910

Query: 543  RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695
            +QS HHE+NE A               SRYYINATHRN + LANKLGVYS  +    +T 
Sbjct: 911  KQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQ 970

Query: 696  GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875
            G  P PG+HLLVPSL KK AF++ GHK STYAGCQG+TAPRVQILL  +T+MC++EV+YT
Sbjct: 971  GNHPVPGLHLLVPSLYKKQAFSEMGHKASTYAGCQGLTAPRVQILLSEETSMCSREVIYT 1030

Query: 876  ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055
            ALSRAV SIHFVN    + AFW KLE+TPYLK FLS +RED                   
Sbjct: 1031 ALSRAVHSIHFVNCGPNNQAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPK 1090

Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235
                V+      +D  + + +K EREIF+E HGH+NCVQ +D   Q+FSHQQAKDE LLW
Sbjct: 1091 THIPVDSAMPIYEDLLDQMPEKHEREIFSEKHGHSNCVQTEDTFVQMFSHQQAKDETLLW 1150

Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415
             TI+ARL IS P+AN +EF  KK +GD+L+  Y +AM LP E   F   LW  C  E+Q 
Sbjct: 1151 ATIEARLVISNPKANWQEFMEKKPIGDVLFGFYREAMGLPTEPIAFEPQLWESCIHEIQR 1210

Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595
            TYL K I+ +K G+ RQSPD+  + I +FLKSQWVKKMEKLGA KIKPGQTIASF Q  V
Sbjct: 1211 TYLAKPINMLKNGQARQSPDYDPNMISLFLKSQWVKKMEKLGALKIKPGQTIASFHQATV 1270

Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL---NYWDFSKPSYANDFTAFDQ 1766
            ML+GTMARYMRR R+   P NI INCE TP+DL+ W +     W F+ PS ANDFTAFDQ
Sbjct: 1271 MLFGTMARYMRRMREIFQPKNIAINCEMTPEDLTDWAVGPAGQWKFAGPSLANDFTAFDQ 1330

Query: 1767 SQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECN 1946
            SQDGAMLQFE+LKAK+ ++PE V++ YL IK + KIFLGTL+IMRLTGEGPTFDANTECN
Sbjct: 1331 SQDGAMLQFEVLKAKHHSIPEDVLDAYLHIKTNSKIFLGTLAIMRLTGEGPTFDANTECN 1390

Query: 1947 IAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAE 2126
            IA+TH +F+IP+GTAQ+YAGDD AI      + SF L++ ++ L++KPA   QE+G WAE
Sbjct: 1391 IAFTHAKFQIPKGTAQLYAGDDSAIDGNPTVRESFRLVEQKLKLRSKPAIAMQEKGDWAE 1450

Query: 2127 FCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQD 2306
            FCGY ITPKG IKDP KLHASL L K       K  + NV+ +Y LD  LAY   D+L +
Sbjct: 1451 FCGYRITPKGFIKDPKKLHASLVLEKK------KGNLRNVLRSYELDLALAYQHRDELHE 1504

Query: 2307 LLS 2315
            LLS
Sbjct: 1505 LLS 1507