BLASTX nr result
ID: Ephedra26_contig00006391
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra26_contig00006391 (2316 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAX19931.1| viral replicase [Nandina mosaic virus] 1416 0.0 dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1410 0.0 dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1405 0.0 dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1405 0.0 dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1405 0.0 dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1405 0.0 dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1401 0.0 dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1400 0.0 ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 1387 0.0 gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a... 1251 0.0 ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 1219 0.0 gb|ADE10202.1| viral replicase [Hydrangea ringspot virus] 994 0.0 ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5... 990 0.0 ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 986 0.0 ref|NP_077079.1| replicase [Clover yellow mosaic virus] 877 0.0 gb|AFM77886.1| replicase [Hosta virus X] 875 0.0 ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2... 874 0.0 gb|ACS28233.1| replicase [Alternanthera mosaic virus] 871 0.0 ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A... 871 0.0 ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082... 869 0.0 >gb|AAX19931.1| viral replicase [Nandina mosaic virus] Length = 1368 Score = 1416 bits (3666), Expect = 0.0 Identities = 694/780 (88%), Positives = 725/780 (92%), Gaps = 9/780 (1%) Frame = +3 Query: 3 RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182 R+LP+A +P HW+ P K++ TLR+LNRFPTPW PDRARARAFTSDVKNSRTGKALHRE Sbjct: 563 RELPRAIMPAHWDSPQFEKIIATLRNLNRFPTPWSPDRARARAFTSDVKNSRTGKALHRE 622 Query: 183 TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362 +QTWKETQTMLT+N + AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD Sbjct: 623 SQTWKETQTMLTDNAEIHTAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 682 Query: 363 WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542 WLKKLPHNPPEQFRTFERAFV S+ PVVIFDDYGKLPQGYIEAFAMTHA+LEL+ILTGDP Sbjct: 683 WLKKLPHNPPEQFRTFERAFVSSRGPVVIFDDYGKLPQGYIEAFAMTHANLELIILTGDP 742 Query: 543 RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695 RQSTHHEANEEA LSRYYINATHRNSKFLANKLG+YSSN CPLKVTY Sbjct: 743 RQSTHHEANEEALISKLSPATTTFSELSRYYINATHRNSKFLANKLGIYSSNHCPLKVTY 802 Query: 696 GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875 GFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT Sbjct: 803 GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 862 Query: 876 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055 ALSRAVDS HFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSA Sbjct: 863 ALSRAVDSNHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAPPDPPKSVMPPV 922 Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235 VE+ TT LDDF+E L DKF+REIFTEAHGHTNCVQ DDPTTQLFSHQQAKDEALLW Sbjct: 923 THFPVEECTTALDDFREELHDKFDREIFTEAHGHTNCVQTDDPTTQLFSHQQAKDEALLW 982 Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415 ETIKARLTISTPEAN+EEFRAKKDLGDILW NYHKAM LPKEQP+FSE+LWTRCAEEVQN Sbjct: 983 ETIKARLTISTPEANIEEFRAKKDLGDILWTNYHKAMNLPKEQPDFSEELWTRCAEEVQN 1042 Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595 TYLKKS++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV Sbjct: 1043 TYLKKSLNQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1102 Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1775 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL+YWDFSKP+YANDFTAFDQSQD Sbjct: 1103 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLSYWDFSKPAYANDFTAFDQSQD 1162 Query: 1776 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1955 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY Sbjct: 1163 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1222 Query: 1956 THTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 2135 THTRF IPEGTAQIYAGDDCAIAQVCPEKPSFALLK+RIALQAKPAYTPQERGQWAEFCG Sbjct: 1223 THTRFNIPEGTAQIYAGDDCAIAQVCPEKPSFALLKDRIALQAKPAYTPQERGQWAEFCG 1282 Query: 2136 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGD+L DLLS Sbjct: 1283 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDELHDLLS 1342 >dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus] Length = 1380 Score = 1410 bits (3650), Expect = 0.0 Identities = 695/780 (89%), Positives = 721/780 (92%), Gaps = 9/780 (1%) Frame = +3 Query: 3 RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182 R+LP+A HW P + ++L+TLRSLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE Sbjct: 575 RELPRADGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRE 634 Query: 183 TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362 +Q WKETQTMLTEN NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLD Sbjct: 635 SQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLD 694 Query: 363 WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542 WLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDP Sbjct: 695 WLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDP 754 Query: 543 RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695 RQSTHHE+NEEA LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY Sbjct: 755 RQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 814 Query: 696 GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875 GFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT Sbjct: 815 GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 874 Query: 876 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A Sbjct: 875 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPC 934 Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235 VED TTTLDDFKE L DKF+REIF AHGHTNCVQ DDPTTQLFSHQQAKDEALLW Sbjct: 935 THFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLW 994 Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415 ETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQN Sbjct: 995 ETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQN 1054 Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595 TYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV Sbjct: 1055 TYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1114 Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1775 MLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD Sbjct: 1115 MLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1174 Query: 1776 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1955 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAY Sbjct: 1175 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAY 1234 Query: 1956 THTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 2135 THTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCG Sbjct: 1235 THTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCG 1294 Query: 2136 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLS Sbjct: 1295 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLS 1354 >dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus] Length = 1380 Score = 1405 bits (3637), Expect = 0.0 Identities = 693/780 (88%), Positives = 719/780 (92%), Gaps = 9/780 (1%) Frame = +3 Query: 3 RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182 R+LP+A HW P + ++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE Sbjct: 575 RELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRE 634 Query: 183 TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362 +Q WKETQTMLTEN NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLD Sbjct: 635 SQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLD 694 Query: 363 WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542 WLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDP Sbjct: 695 WLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDP 754 Query: 543 RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695 RQSTHHE+NEEA LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY Sbjct: 755 RQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 814 Query: 696 GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875 GFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT Sbjct: 815 GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 874 Query: 876 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A Sbjct: 875 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPC 934 Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235 VED TTTLDDFKE L DKF+REIF AHGHTNCVQ DDPTTQLFSHQQAKDEALLW Sbjct: 935 THFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLW 994 Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415 ETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQN Sbjct: 995 ETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQN 1054 Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595 TYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV Sbjct: 1055 TYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1114 Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1775 MLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQD Sbjct: 1115 MLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQD 1174 Query: 1776 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1955 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAY Sbjct: 1175 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAY 1234 Query: 1956 THTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 2135 THTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCG Sbjct: 1235 THTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCG 1294 Query: 2136 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLS Sbjct: 1295 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLS 1354 >dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus] Length = 1380 Score = 1405 bits (3637), Expect = 0.0 Identities = 693/780 (88%), Positives = 719/780 (92%), Gaps = 9/780 (1%) Frame = +3 Query: 3 RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182 R+LP+A HW P + ++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE Sbjct: 575 RELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRE 634 Query: 183 TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362 +Q WKETQTMLTEN NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLD Sbjct: 635 SQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLD 694 Query: 363 WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542 WLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDP Sbjct: 695 WLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDP 754 Query: 543 RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695 RQSTHHE+NEEA LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY Sbjct: 755 RQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 814 Query: 696 GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875 GFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT Sbjct: 815 GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 874 Query: 876 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A Sbjct: 875 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPC 934 Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235 VED TTTLDDFKE L DKF+REIF AHGHTNCVQ DDPTTQLFSHQQAKDEALLW Sbjct: 935 THFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLW 994 Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415 ETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQN Sbjct: 995 ETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQN 1054 Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595 TYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV Sbjct: 1055 TYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1114 Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1775 MLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQD Sbjct: 1115 MLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQD 1174 Query: 1776 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1955 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAY Sbjct: 1175 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAY 1234 Query: 1956 THTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 2135 THTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCG Sbjct: 1235 THTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCG 1294 Query: 2136 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLS Sbjct: 1295 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLS 1354 >dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus] Length = 1380 Score = 1405 bits (3637), Expect = 0.0 Identities = 693/780 (88%), Positives = 719/780 (92%), Gaps = 9/780 (1%) Frame = +3 Query: 3 RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182 R+LP+A HW P + ++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE Sbjct: 575 RELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRE 634 Query: 183 TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362 +Q WKETQTMLTEN NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLD Sbjct: 635 SQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLD 694 Query: 363 WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542 WLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDP Sbjct: 695 WLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDP 754 Query: 543 RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695 RQSTHHE+NEEA LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY Sbjct: 755 RQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 814 Query: 696 GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875 GFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT Sbjct: 815 GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 874 Query: 876 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A Sbjct: 875 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPC 934 Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235 VED TTTLDDFKE L DKF+REIF AHGHTNCVQ DDPTTQLFSHQQAKDEALLW Sbjct: 935 THFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLW 994 Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415 ETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQN Sbjct: 995 ETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQN 1054 Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595 TYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV Sbjct: 1055 TYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1114 Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1775 MLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQD Sbjct: 1115 MLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQD 1174 Query: 1776 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1955 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAY Sbjct: 1175 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAY 1234 Query: 1956 THTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 2135 THTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCG Sbjct: 1235 THTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCG 1294 Query: 2136 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLS Sbjct: 1295 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLS 1354 >dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus] Length = 1380 Score = 1405 bits (3636), Expect = 0.0 Identities = 692/780 (88%), Positives = 719/780 (92%), Gaps = 9/780 (1%) Frame = +3 Query: 3 RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182 R+LP+A HW P + ++L+TLRSLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE Sbjct: 575 RELPRADGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRE 634 Query: 183 TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362 +Q WKETQTMLTEN NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLD Sbjct: 635 SQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLD 694 Query: 363 WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542 WLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDP Sbjct: 695 WLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDP 754 Query: 543 RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695 RQSTHHE+NEEA LSRYYINATHRNSK LANKLGVYSSNSCPLKVTY Sbjct: 755 RQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKLLANKLGVYSSNSCPLKVTY 814 Query: 696 GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875 GFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT Sbjct: 815 GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 874 Query: 876 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A Sbjct: 875 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPC 934 Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235 VED TTTLDDFKE L DKF+REIF AHGHTNCVQ DDPTTQLFSHQQAKDEALLW Sbjct: 935 THFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLW 994 Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415 ETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQN Sbjct: 995 ETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQN 1054 Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595 TYLKKS+SQIKGGERRQSPDFHEH ILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV Sbjct: 1055 TYLKKSVSQIKGGERRQSPDFHEHHILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1114 Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1775 MLYGTMARYMRRFRDAL PNNIMINCE+TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD Sbjct: 1115 MLYGTMARYMRRFRDALRPNNIMINCERTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1174 Query: 1776 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1955 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAY Sbjct: 1175 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAY 1234 Query: 1956 THTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 2135 THTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCG Sbjct: 1235 THTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCG 1294 Query: 2136 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLS Sbjct: 1295 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLS 1354 >dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus] Length = 1380 Score = 1401 bits (3626), Expect = 0.0 Identities = 689/780 (88%), Positives = 718/780 (92%), Gaps = 9/780 (1%) Frame = +3 Query: 3 RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182 R+LP+A HW P + ++++TLRS NR+PTPW PDR+RA+AFTSDVKNSRTGKALHRE Sbjct: 575 RELPRAEGHAHWQGPDMERIISTLRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRE 634 Query: 183 TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362 +Q WKETQTML EN NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLD Sbjct: 635 SQVWKETQTMLAENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLD 694 Query: 363 WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542 WLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFA+THASLELVILTGDP Sbjct: 695 WLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFALTHASLELVILTGDP 754 Query: 543 RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695 RQSTHHE+NEEA LSRYYINATHRNSKFLANKLGVYSSN CPLKVTY Sbjct: 755 RQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNPCPLKVTY 814 Query: 696 GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875 GFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT Sbjct: 815 GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 874 Query: 876 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A Sbjct: 875 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTATTAEAKPVAPPC 934 Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235 VED TTTLDDFKE L DKF+REIF HGHTNCVQ DDPTTQLFSHQQAKDEALLW Sbjct: 935 THFPVEDGTTTLDDFKEELHDKFDREIFNPTHGHTNCVQTDDPTTQLFSHQQAKDEALLW 994 Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415 ETI ARLTIS PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQN Sbjct: 995 ETINARLTISNPEANLAEFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWIRCAEEVQN 1054 Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595 TYLKKS++QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV Sbjct: 1055 TYLKKSVAQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1114 Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1775 MLYGTMARYMRRFR+ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD Sbjct: 1115 MLYGTMARYMRRFREALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1174 Query: 1776 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1955 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAY Sbjct: 1175 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAY 1234 Query: 1956 THTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 2135 THTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCG Sbjct: 1235 THTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCG 1294 Query: 2136 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLS Sbjct: 1295 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLS 1354 >dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus] Length = 1380 Score = 1400 bits (3624), Expect = 0.0 Identities = 690/780 (88%), Positives = 718/780 (92%), Gaps = 9/780 (1%) Frame = +3 Query: 3 RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182 R+LP+A HW P ++++L+TLRSLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE Sbjct: 575 RELPRADGHAHWQGPDMARILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRE 634 Query: 183 TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362 +Q WKETQ MLTEN NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLD Sbjct: 635 SQVWKETQAMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLD 694 Query: 363 WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542 W KKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDP Sbjct: 695 WPKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDP 754 Query: 543 RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695 RQSTHHE+NEEA LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY Sbjct: 755 RQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 814 Query: 696 GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875 GFQP+PG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT Sbjct: 815 GFQPRPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 874 Query: 876 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A Sbjct: 875 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPC 934 Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235 VED TTTLDDFKE L DKF+REIF AHGHTNCVQ DDPTTQLFSHQQAKDEALLW Sbjct: 935 THFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLW 994 Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415 ETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQN Sbjct: 995 ETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQN 1054 Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595 TYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV Sbjct: 1055 TYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1114 Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1775 MLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD Sbjct: 1115 MLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1174 Query: 1776 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1955 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGP FDANTECNIAY Sbjct: 1175 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPAFDANTECNIAY 1234 Query: 1956 THTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 2135 THTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCG Sbjct: 1235 THTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCG 1294 Query: 2136 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ NYSLDAKLAYSLGDDLQDLLS Sbjct: 1295 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVDNYSLDAKLAYSLGDDLQDLLS 1354 >ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA replication protein; AltName: Full=156 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein [Plantago asiatica mosaic virus] Length = 1385 Score = 1387 bits (3590), Expect = 0.0 Identities = 683/780 (87%), Positives = 715/780 (91%), Gaps = 9/780 (1%) Frame = +3 Query: 3 RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182 ++LP+ATLP HW L ++L+TLRSLNRFPTPW PDR RARAFTSDVKNSRTGKALHRE Sbjct: 580 QELPRATLPAHWQGHNLERILSTLRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKALHRE 639 Query: 183 TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362 +QTWKETQTMLTEN LAISVIHGAGGSGKSQALQTLLRQ+ LPIEVVLPTNELRLD Sbjct: 640 SQTWKETQTMLTENTQTELAISVIHGAGGSGKSQALQTLLRQDHSLPIEVVLPTNELRLD 699 Query: 363 WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542 WLKKLPHNPPEQFRTFERAFV S SPVVIFDDYGKLPQGY+EAFA+THA+LELVILTGDP Sbjct: 700 WLKKLPHNPPEQFRTFERAFVSSHSPVVIFDDYGKLPQGYLEAFALTHANLELVILTGDP 759 Query: 543 RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695 RQSTHHE+NEEA SRYYINAT RNSKFLANKLGVYS+NSCPL VTY Sbjct: 760 RQSTHHESNEEALISKLPPATTIYSAFSRYYINATLRNSKFLANKLGVYSANSCPLNVTY 819 Query: 696 GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875 GFQP PG+HLLVPSLMKKAAFTDAGHKVS+YAGCQGITAP+VQILLDNDTTMCTKEVLYT Sbjct: 820 GFQPLPGLHLLVPSLMKKAAFTDAGHKVSSYAGCQGITAPKVQILLDNDTTMCTKEVLYT 879 Query: 876 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055 ALSRAVDSIHFVN+NAQSSAFWEKLEATPYLKTFLSLVREDKI EF A Sbjct: 880 ALSRAVDSIHFVNTNAQSSAFWEKLEATPYLKTFLSLVREDKITEFQAPADAPKPVTPPV 939 Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235 VE+ TTLDDFKE L DKF+REIFT GHTNCVQ DDPTTQLFSHQQAKDEALLW Sbjct: 940 THFPVEEPATTLDDFKEELRDKFDREIFTSDRGHTNCVQTDDPTTQLFSHQQAKDEALLW 999 Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415 E I+ARL ISTPEAN+EEFRAKKDLGDILW NYH+AM LPKEQP+FSEDLW RCAEEVQN Sbjct: 1000 EMIRARLKISTPEANIEEFRAKKDLGDILWVNYHRAMGLPKEQPDFSEDLWNRCAEEVQN 1059 Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595 TYLKK+++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAK+IKPGQTIASFQQHAV Sbjct: 1060 TYLKKTMAQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKEIKPGQTIASFQQHAV 1119 Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1775 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD Sbjct: 1120 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1179 Query: 1776 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1955 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY Sbjct: 1180 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1239 Query: 1956 THTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 2135 THTRF+IPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG Sbjct: 1240 THTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 1299 Query: 2136 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315 YLITPKGLIKDPLKLHASLELAKAQKKAGV+DAI+NV+ANYSLDAKLAYSLGDDLQDLLS Sbjct: 1300 YLITPKGLIKDPLKLHASLELAKAQKKAGVRDAITNVVANYSLDAKLAYSLGDDLQDLLS 1359 >gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic virus] Length = 711 Score = 1251 bits (3237), Expect = 0.0 Identities = 614/685 (89%), Positives = 639/685 (93%), Gaps = 9/685 (1%) Frame = +3 Query: 288 LQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGK 467 LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGK Sbjct: 1 LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60 Query: 468 LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXXXXX---------LSRYYINAT 620 LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEA LSRYYINAT Sbjct: 61 LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINAT 120 Query: 621 HRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQ 800 HRNSKFLANKLGVYSSNSCPLKVTYG QPQPG+HLLVPSLMKKAAFTDAGHKVSTYAGCQ Sbjct: 121 HRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQ 180 Query: 801 GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFL 980 GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFL Sbjct: 181 GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFL 240 Query: 981 SLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 1160 SLVRED++ EFSA VED TTTLDDF+E L DKF+REIF +AHGHT Sbjct: 241 SLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGHT 300 Query: 1161 NCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHK 1340 NCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAKKDLGDILW NY K Sbjct: 301 NCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLGDILWENYRK 360 Query: 1341 AMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWV 1520 AMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSPDFHEHQILIFLKSQWV Sbjct: 361 AMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFLKSQWV 420 Query: 1521 KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSR 1700 KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSR Sbjct: 421 KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSR 480 Query: 1701 WVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL 1880 WVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL Sbjct: 481 WVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL 540 Query: 1881 GTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALL 2060 GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDDCAI+QVCPEKPSF+LL Sbjct: 541 GTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDDCAISQVCPEKPSFSLL 600 Query: 2061 KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIS 2240 KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+ Sbjct: 601 KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIT 660 Query: 2241 NVIANYSLDAKLAYSLGDDLQDLLS 2315 NV+ANYSLDAKLAYSLGDDLQDLLS Sbjct: 661 NVVANYSLDAKLAYSLGDDLQDLLS 685 >ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase [Tulip virus X] Length = 1361 Score = 1219 bits (3154), Expect = 0.0 Identities = 601/779 (77%), Positives = 664/779 (85%), Gaps = 10/779 (1%) Frame = +3 Query: 9 LPKATLPEHWNEPG-LSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRET 185 LP T E+ + KV+ TL+ LNR PTPW PDR RARA+ SD+KNSRTGKALH+E+ Sbjct: 557 LPHETFDEYDSTSSPFDKVVITLKQLNRSPTPWTPDRLRARAYASDIKNSRTGKALHKES 616 Query: 186 QTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDW 365 Q WKETQT LTE L +SVIHGAGGSGKSQALQT+LR +PDLP+EVVLPTNELR DW Sbjct: 617 QNWKETQTRLTETSETRLGLSVIHGAGGSGKSQALQTMLRNHPDLPVEVVLPTNELRXDW 676 Query: 366 LKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPR 545 L+KLPHNPPEQFRTFERAFV S +PVVIFDDYGKLPQG++EAFA+ L+L ILTGDPR Sbjct: 677 LRKLPHNPPEQFRTFERAFVSSTAPVVIFDDYGKLPQGFLEAFALCRPGLKLAILTGDPR 736 Query: 546 QSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYG 698 QSTHHE+NE+A L RYYINATHRN K LANKLGVYSSN PL V+YG Sbjct: 737 QSTHHESNEQAMIAQLEPATKIFSALCRYYINATHRNVKELANKLGVYSSNPSPLHVSYG 796 Query: 699 FQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTA 878 F+P+PG+HLLVPSL+KKAAF DAGHKVSTYAGCQGITAP+VQILLD+DTTMC+ EVLYTA Sbjct: 797 FRPEPGLHLLVPSLVKKAAFADAGHKVSTYAGCQGITAPKVQILLDSDTTMCSSEVLYTA 856 Query: 879 LSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXX 1058 LSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFLSLVRE K+EEF+A Sbjct: 857 LSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFLSLVREHKLEEFTAVEDPPQEVAPPVT 916 Query: 1059 XXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWE 1238 VE+ + TL ++SL+DK++REI HG TNCVQ +D T QLFSHQQAKDEALLWE Sbjct: 917 HFPVENASHTLGLIQDSLADKYDREILNTNHGFTNCVQTEDLTVQLFSHQQAKDEALLWE 976 Query: 1239 TIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNT 1418 TI ARL +STPEANL EF AKKDLGD+LW NYH+AMKLPKEQP+FS +LW RCA EVQ T Sbjct: 977 TIDARLRLSTPEANLAEFHAKKDLGDVLWENYHRAMKLPKEQPDFSPELWERCAAEVQQT 1036 Query: 1419 YLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVM 1598 YL KS+ QIKGGERRQSPDF E++ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVM Sbjct: 1037 YLSKSLQQIKGGERRQSPDFPENKILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQAAVM 1096 Query: 1599 LYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDG 1778 LYGTMARYMRR+RDAL PNNIMINCE+TP DLSRWV N+WDF+KP YANDFTAFDQSQDG Sbjct: 1097 LYGTMARYMRRYRDALGPNNIMINCERTPADLSRWVRNHWDFTKPXYANDFTAFDQSQDG 1156 Query: 1779 AMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYT 1958 AMLQFEILKAK+FNLPEWVIEGYLDIKL+P+IF GTL+IMRLTGEGPTFDANTECNIAYT Sbjct: 1157 AMLQFEILKAKFFNLPEWVIEGYLDIKLTPQIFTGTLAIMRLTGEGPTFDANTECNIAYT 1216 Query: 1959 HTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGY 2138 HTRF IP+ AQ+YAGDDCAIA+VC EKPSFALLKNRIALQAKPAY PQ RG WAEFCGY Sbjct: 1217 HTRFHIPDHVAQLYAGDDCAIAEVCQEKPSFALLKNRIALQAKPAYAPQTRGAWAEFCGY 1276 Query: 2139 LITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315 LITPKGLIKDPLKLH+SLELAKA +K G KDAI+NV+ANYSLDAK+AYSLGDDLQDLLS Sbjct: 1277 LITPKGLIKDPLKLHSSLELAKALRKQGRKDAITNVVANYSLDAKMAYSLGDDLQDLLS 1335 >gb|ADE10202.1| viral replicase [Hydrangea ringspot virus] Length = 1386 Score = 994 bits (2569), Expect = 0.0 Identities = 500/765 (65%), Positives = 575/765 (75%), Gaps = 9/765 (1%) Frame = +3 Query: 48 GLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENV 227 G V+ L L+R PTPW P RAR++TSD+KN RTG L +E+ TWKETQT+ E + Sbjct: 597 GHELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 656 Query: 228 TANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRT 407 + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P PE+ +T Sbjct: 657 EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKT 716 Query: 408 FERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXXX 587 +ERAF SPVV+FDDYGKLP GYIEA+ +ELVILTGD RQSTHHE NE+A Sbjct: 717 YERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMIS 776 Query: 588 XX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSL 740 L RYYINATHRN + LANKL VYS K+T GFQP +HLLVPSL Sbjct: 777 QLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSL 836 Query: 741 MKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSN 920 +KK+A+ + GHKVSTYAGCQGITAP++QILLDNDT MC+KEVLYTALSRAV SIHF+N+ Sbjct: 837 LKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTG 896 Query: 921 AQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDF 1100 S+FWEKLEATPYLK FLS VRE+ I VE+ + L + Sbjct: 897 PTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPNADPRPDPEPKTHFPVENTSCALGAY 956 Query: 1101 KESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN 1280 E + +KFEREIFTE GHTNCVQ +P QLF HQQAKDEALLWETIKARLTIS+PEAN Sbjct: 957 MEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEAN 1016 Query: 1281 LEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGER 1460 EEF KKD+GDILW +Y KAM LP+E FSEDLW A EVQNTYL K ++ +K GER Sbjct: 1017 WEEFYRKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGER 1076 Query: 1461 RQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRD 1640 RQSPDF +HQIL+FLKSQWVKKMEKLG KIK GQTIASFQQHAVMLYGTMARYMRRFR+ Sbjct: 1077 RQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFRE 1136 Query: 1641 ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFN 1820 L PN+I INCE TP+DLSR++ NYWDF SYANDFTAFDQSQDGAMLQFEILKAK+FN Sbjct: 1137 VLGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDGAMLQFEILKAKHFN 1196 Query: 1821 LPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIY 2000 +PE +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+Y Sbjct: 1197 IPEEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLY 1256 Query: 2001 AGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKL 2180 AGDD AIA V PE+PSF L+ +AL+AKP Y PQ G WAEFCGYLITPKGLIKDP KL Sbjct: 1257 AGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKL 1316 Query: 2181 HASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315 ASL+L +A +G K + NY D LAY+L D L ++LS Sbjct: 1317 FASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILS 1359 >ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1| viral replicase [Hydrangea ringspot virus] Length = 1386 Score = 990 bits (2560), Expect = 0.0 Identities = 499/765 (65%), Positives = 574/765 (75%), Gaps = 9/765 (1%) Frame = +3 Query: 48 GLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENV 227 G V+ L L+R PTPW P RAR++TSD+KN RTG L +E+ TWKETQT+ E + Sbjct: 597 GHELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 656 Query: 228 TANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRT 407 + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P PE+ +T Sbjct: 657 EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKT 716 Query: 408 FERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXXX 587 +ERAF SPVV+FDDYGKLP GYIEA+ +ELVILTGD RQSTHHE NE+A Sbjct: 717 YERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMIS 776 Query: 588 XX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSL 740 L RYYINATHRN + LANKL VYS K+T GFQP +HLLVPSL Sbjct: 777 QLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSL 836 Query: 741 MKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSN 920 +KK+A+ + GHKVSTYAGCQGITAP++QILLDNDT MC+KEVLYTALSRAV SIHF+N+ Sbjct: 837 LKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTG 896 Query: 921 AQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDF 1100 S+FWEKLEATPYLK FLS VRE+ I VE+ + L + Sbjct: 897 PTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPKTHFPVENTSCALGAY 956 Query: 1101 KESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN 1280 E + +KFEREIFTE GHTNCVQ +P QLF HQQAKDEALLWETIKARLTIS+PEAN Sbjct: 957 MEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEAN 1016 Query: 1281 LEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGER 1460 EEF KKD+GDILW +Y KAM LP+E FSEDLW A EVQNTYL K ++ +K GER Sbjct: 1017 WEEFYKKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGER 1076 Query: 1461 RQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRD 1640 RQSPDF +HQIL+FLKSQWVKKMEKLG KIK GQTIASFQQHAVMLYGTMARYMRRFR+ Sbjct: 1077 RQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFRE 1136 Query: 1641 ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFN 1820 AL PN+I INCE TP+DLSR++ NYWDF SYANDFTAFDQSQD AMLQFEILKAK+FN Sbjct: 1137 ALGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDAAMLQFEILKAKHFN 1196 Query: 1821 LPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIY 2000 +P +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+Y Sbjct: 1197 IPGEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLY 1256 Query: 2001 AGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKL 2180 AGDD AIA V PE+PSF L+ +AL+AKP Y PQ G WAEFCGYLITPKGLIKDP KL Sbjct: 1257 AGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKL 1316 Query: 2181 HASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315 ASL+L +A +G K + NY D LAY+L D L ++LS Sbjct: 1317 FASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILS 1359 >ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus] gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent RNA polymerase [Cassava common mosaic virus] gi|1587823|prf||2207297A ORF 1 Length = 1449 Score = 986 bits (2548), Expect = 0.0 Identities = 498/781 (63%), Positives = 589/781 (75%), Gaps = 14/781 (1%) Frame = +3 Query: 15 KATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTW 194 K +P H ++L L++L+R PT W PD RA++FTSD+KN RTGK L +E+Q+W Sbjct: 654 KTGIPVHRETKAPQELLDLLKALSRMPTLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSW 713 Query: 195 KETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKK 374 KE QT+ ++ + +SVIHGAGGSGKS ALQ LLR +P+LPI+V+LPTNELR+DWL K Sbjct: 714 KEAQTLKVDHNIRPVPLSVIHGAGGSGKSAALQDLLRDHPELPIQVILPTNELRMDWLSK 773 Query: 375 LPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQST 554 LP N PE FRTFE+A++ + +P +I DDYGKLPQGY+EAFA+TH ++EL++LTGD +QS Sbjct: 774 LPRNRPENFRTFEKAYLQTNAPSIIMDDYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSV 833 Query: 555 HHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP 707 HHE NE+A SRYYINATHRN+K LAN LGVYS N+ LK+T+GFQP Sbjct: 834 HHETNEQAMIAQLEPSTQIFSQFSRYYINATHRNAKKLANMLGVYSDNNKELKITHGFQP 893 Query: 708 QPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSR 887 +HLLVPSL+KKAAF++AGHK STYAGCQGITA ++QILLD++T MC++EVLYTALSR Sbjct: 894 IKDIHLLVPSLIKKAAFSEAGHKTSTYAGCQGITARKLQILLDSNTPMCSQEVLYTALSR 953 Query: 888 AVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXX 1067 AVDSIHF+N+ SS FWEKLEATPYLKTFLS+VREDKI E+ Sbjct: 954 AVDSIHFINTAPTSSNFWEKLEATPYLKTFLSMVREDKILEWRPKEPEPAKEEPPKTHFP 1013 Query: 1068 VEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIK 1247 VE+ T L++F E L+ K EREIF E+HGHTNCVQ D+ Q SHQQAKDEALLWETIK Sbjct: 1014 VENGNTILEEFTEELAQKHEREIFNESHGHTNCVQTDNKIIQTLSHQQAKDEALLWETIK 1073 Query: 1248 ARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLK 1427 ARL IS + N EF KKD+GDILW NY +AM LP++ F E+LW A E+Q+TYL Sbjct: 1074 ARLVISHKQHNWTEFVKKKDIGDILWLNYKRAMHLPEDPIPF-EELWELAAREIQHTYLS 1132 Query: 1428 KSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYG 1607 KS +K GERRQSPDF E ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYG Sbjct: 1133 KSTQMLKNGERRQSPDFGEKDILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYG 1192 Query: 1608 TMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAML 1787 TMARYMRR RD P +IMINCE+TP DLS W LNYW+F KPSYANDFTAFDQSQDGAML Sbjct: 1193 TMARYMRRIRDIYMPEHIMINCERTPTDLSYWALNYWNFDKPSYANDFTAFDQSQDGAML 1252 Query: 1788 QFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTR 1967 QFEILKAK+ N+PEWV+EGYLDIKL +IFLGTLSIMRLTGE TFDANTECNIAYTHTR Sbjct: 1253 QFEILKAKHHNIPEWVLEGYLDIKLDSRIFLGTLSIMRLTGEYQTFDANTECNIAYTHTR 1312 Query: 1968 FEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQ-----AKPAYTPQERGQWAEFC 2132 F+IPEG AQ D A+ C EKPSF L+++ ++L+ KP Q G+WAEFC Sbjct: 1313 FDIPEGVAQ-----DSAMDATCLEKPSFKLIESELSLKLYAGDCKPCLKAQIPGEWAEFC 1367 Query: 2133 GYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLL 2312 GYLITPKGLIKDPLKL AS LAK + K + N + NY+ D KLAY LGDDL +LL Sbjct: 1368 GYLITPKGLIKDPLKLAASFRLAKERGKR----ELDNCLENYARDMKLAYDLGDDLLELL 1423 Query: 2313 S 2315 + Sbjct: 1424 T 1424 >ref|NP_077079.1| replicase [Clover yellow mosaic virus] Length = 1670 Score = 877 bits (2265), Expect = 0.0 Identities = 436/773 (56%), Positives = 554/773 (71%), Gaps = 10/773 (1%) Frame = +3 Query: 21 TLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKE 200 +LP++ +L L+ +R+P P+ D + RAF SDVKN+RTG ++ WKE Sbjct: 876 SLPKYEGRLPEPHLLEQLKEASRYPCPYRIDHKQGRAFASDVKNNRTGSLTTKQPDEWKE 935 Query: 201 TQTMLTENVTAN-LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKL 377 T + E+ +A++VIHGAGGSGKSQ LQ L +NP+ I +LPTNELR DWL KL Sbjct: 936 AFTRMAESPEQRTVALTVIHGAGGSGKSQLLQRYLMENPECKINTILPTNELRNDWLTKL 995 Query: 378 PHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 557 P P +TFERA + + PVVIFDDY KLP GYI+AF H ++E ILTGDPRQST Sbjct: 996 PKMPLTAIQTFERALISPQKPVVIFDDYSKLPAGYIDAFLSLHKNVEWAILTGDPRQSTF 1055 Query: 558 HEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 710 HE+NE+A SRYYINATHRN + LA LGVYS + ++ +P+ Sbjct: 1056 HESNEQAMINHLSKSTEHFSQFSRYYINATHRNKQDLARFLGVYSEKTGLTSISMSSRPE 1115 Query: 711 PGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRA 890 P HLLVPSL+KK ++T+ G+K STYAGCQGITA RVQ+LLD DTT+C+ +VLYTALSRA Sbjct: 1116 PDWHLLVPSLIKKRSYTEMGYKTSTYAGCQGITADRVQVLLDTDTTLCSDQVLYTALSRA 1175 Query: 891 VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXV 1070 V ++HF+N++A SSAFW+KL +TPYLKTFLS +RED++ E V Sbjct: 1176 VHAVHFINTSATSSAFWDKLNSTPYLKTFLSTLREDRLREEGPKPETPEEPKPATTHFPV 1235 Query: 1071 EDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKA 1250 E++ +L+D E L +K ERE+++ HG++NCVQ DDP QLFSHQQAKD+ LLW TI+A Sbjct: 1236 ENENLSLEDKVEELLEKHERELYSSDHGYSNCVQTDDPVVQLFSHQQAKDQTLLWATIEA 1295 Query: 1251 RLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKK 1430 RL IS P+AN+EEFR KK++GD+LW NY +AMKLP + EFS +LW CAEEVQ TYL K Sbjct: 1296 RLKISNPKANMEEFRMKKNVGDVLWLNYKRAMKLPDKPIEFSHELWHACAEEVQKTYLSK 1355 Query: 1431 SISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT 1610 ++ IK GE RQSPDF +H I +FLKSQWVKK+EKLGA KIKPGQTIASFQQ VMLYGT Sbjct: 1356 PLNMIKNGENRQSPDFDKHTISLFLKSQWVKKLEKLGAPKIKPGQTIASFQQATVMLYGT 1415 Query: 1611 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 1790 MARYMRR R A P NI +NCE+TPQ L+ ++ + W F +P+YANDFT FDQSQDGAMLQ Sbjct: 1416 MARYMRRIRQAFQPPNIQLNCEQTPQQLTTFIKDQWSFDQPAYANDFTQFDQSQDGAMLQ 1475 Query: 1791 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 1970 FE+LKAK+ N+PE +I+GY+DIK + K+F G L+IMRLTGEGPTFDANTECNIA+ HTRF Sbjct: 1476 FEVLKAKHHNIPEAIIQGYIDIKTNAKVFTGVLAIMRLTGEGPTFDANTECNIAFNHTRF 1535 Query: 1971 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 2150 I + TAQ+YAGDD A +++ EK SF + ++AL +KP + Q++G+WAEFCGY ITP Sbjct: 1536 HISDDTAQLYAGDDTAFSKIPIEKVSFQGVAKQLALTSKPLFYKQKKGEWAEFCGYSITP 1595 Query: 2151 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 2309 GLIK+P KL A+L LA Q K +KD ++ +YS D LAY D+L ++ Sbjct: 1596 LGLIKEPKKLQANLTLAIKQNK--IKDTVN----SYSQDVALAYQHKDELYEI 1642 >gb|AFM77886.1| replicase [Hosta virus X] Length = 1473 Score = 875 bits (2261), Expect = 0.0 Identities = 448/771 (58%), Positives = 543/771 (70%), Gaps = 12/771 (1%) Frame = +3 Query: 39 NEPGLSK-VLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTML 215 N +SK +L TLRS+ R PT W PD +RARA+TSD+KN RTG A+H Q WKET + Sbjct: 664 NPSSVSKEILETLRSVARAPTSWKPDASRARAYTSDIKNRRTGAAVHMAPQAWKETMDFI 723 Query: 216 TENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIE--VVLPTNELRLDWLKKLPHNP 389 EN L ISVIHGAGGSGKS+ LQ +L + L E VV PTNELR DW+ KLP + Sbjct: 724 AENAERTLHISVIHGAGGSGKSRCLQEMLNKFHFLFDETLVVCPTNELRRDWIDKLPLSE 783 Query: 390 PEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEAN 569 P TFERA + VIFDDY KLP G+IEA+++ ++ELVILTGD +Q++HHE+N Sbjct: 784 PGSVLTFERALMNPAKGTVIFDDYTKLPAGFIEAYSICQPNVELVILTGDAKQASHHESN 843 Query: 570 EEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMH 722 + A RYY+NATHRN + LAN LG+YS LKVT+ P MH Sbjct: 844 DNAMIAGLDPAALEFSKFCRYYLNATHRNPRNLANALGIYSEKPGNLKVTFTNHLLPEMH 903 Query: 723 LLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSI 902 +LVPSL+KKA + GHK STYAGCQG+T +VQI LD++TT+C+ EVLYTALSRAV+ I Sbjct: 904 ILVPSLLKKATLEELGHKCSTYAGCQGVTLSKVQIYLDSNTTLCSNEVLYTALSRAVEQI 963 Query: 903 HFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKT 1082 +FVNS + FW KLEATPYLKTFL L RE+KI E + VE Sbjct: 964 NFVNSGPFNGPFWAKLEATPYLKTFLRLTREEKINEITPEEPKPKEPEPPKTHFPVETSA 1023 Query: 1083 TTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTI 1262 E + +K REI+ + HGHTNCVQ D+P Q+F+HQQAKDEAL WETI+ARL I Sbjct: 1024 HLYSSITEEMPEKHAREIYNKTHGHTNCVQTDEPLVQMFAHQQAKDEALFWETIEARLRI 1083 Query: 1263 STPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQ 1442 +T EAN++E K+D+GD+L+ YHKAM LPK+ F DLW CA+EVQ TYL K I+ Sbjct: 1084 TTSEANVQELNEKRDIGDLLFHAYHKAMGLPKDPIPFENDLWETCAQEVQQTYLSKPINL 1143 Query: 1443 IKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARY 1622 IK GE+RQ PDF ++ I++FLKSQWVKKMEKLGA IKPGQTIASF Q VMLYGTMARY Sbjct: 1144 IKNGEKRQGPDFDKNAIMLFLKSQWVKKMEKLGAPTIKPGQTIASFHQITVMLYGTMARY 1203 Query: 1623 MRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEIL 1802 MRR RD P +I+INCEKTP +S +V WDFS +YANDFTAFDQSQDGAMLQFEI+ Sbjct: 1204 MRRIRDRFCPKHILINCEKTPTQISDFVKAQWDFSDFAYANDFTAFDQSQDGAMLQFEII 1263 Query: 1803 KAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPE 1982 KAK+ N+PE +I GY+DIK + KIFLGTL+IMRLTGEGPTFDANTECNIAYTH RF +PE Sbjct: 1264 KAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGPTFDANTECNIAYTHLRFNVPE 1323 Query: 1983 GTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLI 2162 AQ+YAGDD A+++VCPEK SF +R+ L++KP PQ +G WAEFCG LITP+G+I Sbjct: 1324 NVAQVYAGDDSALSKVCPEKDSFKQFADRLTLKSKPQVFPQTQGAWAEFCGLLITPRGII 1383 Query: 2163 KDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315 KDP+KLHAS LA K G I + +Y D KL+Y LGD LQ+LLS Sbjct: 1384 KDPVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLKLSYDLGDHLQELLS 1430 >ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV RecName: Full=RNA replication protein; AltName: Full=176 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed protein product [Papaya mosaic virus] gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic virus] Length = 1547 Score = 874 bits (2259), Expect = 0.0 Identities = 445/764 (58%), Positives = 547/764 (71%), Gaps = 12/764 (1%) Frame = +3 Query: 60 VLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANL 239 V TL L R PTP+ P+ RARA+TSDVKN R G L ++ + W L E L Sbjct: 756 VYKTLDGLARAPTPYSPNPIRARAYTSDVKNCRIGALLRQQGKEWGCRFDALVEAGKREL 815 Query: 240 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 419 AISVIHGAGGSGKSQALQTL++ NP+L I VVLPTNELRLDWL+KLP P E+F+TFE+A Sbjct: 816 AISVIHGAGGSGKSQALQTLIKDNPELDITVVLPTNELRLDWLRKLPKAPQEKFKTFEKA 875 Query: 420 FVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAXXXXX-- 593 + +P+VIFDDYGKLP GY+EAF + ++++L+ILTGD +QS HHE+NE A Sbjct: 876 LLAPPTPIVIFDDYGKLPAGYVEAFCLYFSTVQLIILTGDCKQSVHHESNENATTSSIEP 935 Query: 594 -------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKA 752 L RYYINATHRN K LANKLGVYS + +VT+G P PG+H+LVPSL KK Sbjct: 936 LVKEASELCRYYINATHRNKKDLANKLGVYSEKTGLTEVTHGTTPIPGLHMLVPSLYKKQ 995 Query: 753 AFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 932 AF++ GHKVSTYAGCQGITAP++QILL +T++C++EVLYTALSRAV SIHFVN++ + Sbjct: 996 AFSEMGHKVSTYAGCQGITAPKIQILLTEETSLCSREVLYTALSRAVHSIHFVNASPNNQ 1055 Query: 933 AFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESL 1112 AFW+KLE TPYLK FLS +RE+ + ED ++ E + Sbjct: 1056 AFWKKLECTPYLKAFLSTLREEVAQPIEEKKAEPTPVEPPRTHIAKEDAMVEYENVIEKM 1115 Query: 1113 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 1292 +K EREIF+E HGH+NCVQ +DP Q+FSHQQAKD+ LLW TI+ARL IS P+AN +E+ Sbjct: 1116 PEKHEREIFSEKHGHSNCVQTEDPFIQMFSHQQAKDDTLLWATIEARLVISNPKANWQEY 1175 Query: 1293 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 1472 K+ +G++L+ +Y +AM LPK F EDLW EVQ TYL K + IK G RQSP Sbjct: 1176 LEKRPVGEVLFESYKRAMHLPKMPIPFEEDLWNSSMHEVQKTYLSKPENMIKNGMARQSP 1235 Query: 1473 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 1652 D+ + I +FLKSQWVKKMEKLGA KIKPGQTIASF Q VML+GTMARYMRR R+ P Sbjct: 1236 DYDPNVISLFLKSQWVKKMEKLGAIKIKPGQTIASFHQATVMLFGTMARYMRRMREVFQP 1295 Query: 1653 NNIMINCEKTPQDLSRWVL---NYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNL 1823 +I INCE TP+DLS W +W F PS ANDFTAFDQSQDGAMLQFEILKA++ ++ Sbjct: 1296 AHIRINCEMTPEDLSSWAAGEGGHWKFKGPSLANDFTAFDQSQDGAMLQFEILKARHHSI 1355 Query: 1824 PEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYA 2003 PE +++ YL IK + KIFLGTL+IMRLTGEGPTFDANTECNIA+THT+F IPEGTAQ+YA Sbjct: 1356 PEDILDAYLTIKTNSKIFLGTLAIMRLTGEGPTFDANTECNIAFTHTKFNIPEGTAQLYA 1415 Query: 2004 GDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLH 2183 GDD AI + +PSF +++ ++ L++KP Q++G WAEFCG+ ITPKGLIKDP KLH Sbjct: 1416 GDDSAIDGLPALRPSFKMIEQKLTLRSKPQVALQQKGDWAEFCGFRITPKGLIKDPKKLH 1475 Query: 2184 ASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315 AS L K KK VK NV+ +Y LD LAY D L +LLS Sbjct: 1476 ASWMLEK--KKGNVK----NVLRSYELDLALAYQHKDSLHELLS 1513 >gb|ACS28233.1| replicase [Alternanthera mosaic virus] Length = 1541 Score = 871 bits (2251), Expect = 0.0 Identities = 451/783 (57%), Positives = 547/783 (69%), Gaps = 12/783 (1%) Frame = +3 Query: 3 RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182 + LPK + PE N P L K+L R PTP+ P RA+A++SDVKNSR G L ++ Sbjct: 736 KSLPKCS-PEKVN-PSLLKMLNDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQ 790 Query: 183 TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362 + W L EN LAISVIHGAGGSGKS+ALQ L+ NPD + +VLPTNELRLD Sbjct: 791 GKDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLD 850 Query: 363 WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542 WLKKLP P +Q +TFE+A + P VIFDDYGKLP GYIEAF+ +S+EL++LTGD Sbjct: 851 WLKKLPTFPADQIKTFEKALLAPIKPTVIFDDYGKLPAGYIEAFSCYMSSVELLVLTGDS 910 Query: 543 RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695 +QS HHE+NE A SRYYINATHRN + LANKLGVYS + +T Sbjct: 911 KQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQ 970 Query: 696 GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875 G P PG+HLLVPSL KK AF++ GHKVSTYAGCQG+TAPRVQILL +T+MC++EV+YT Sbjct: 971 GNHPVPGLHLLVPSLYKKEAFSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYT 1030 Query: 876 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055 ALSRAV SIHFVN + AFW KLE+TPYLK FLS +RED Sbjct: 1031 ALSRAVHSIHFVNCGPNNQAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPK 1090 Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235 V+ +D + + +K EREIF+E HGH+NCVQ +D Q+FSHQQAKDE LLW Sbjct: 1091 THIPVDSAMPIYEDLLDQMPEKHEREIFSERHGHSNCVQTEDTFVQMFSHQQAKDETLLW 1150 Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415 TI+ARL IS P+AN +EF K+ +GD+L+ Y +AM LP E F LW C EVQ Sbjct: 1151 ATIEARLVISNPKANWQEFMEKRPIGDVLFGFYREAMGLPTEPIAFEPQLWESCIHEVQR 1210 Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595 TYL K I+ +K G+ RQSPD+ + I +FLKSQWVKKMEKLGA KIKPGQTIASF Q V Sbjct: 1211 TYLAKPINMLKNGQARQSPDYDPNMISLFLKSQWVKKMEKLGALKIKPGQTIASFHQATV 1270 Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL---NYWDFSKPSYANDFTAFDQ 1766 ML+GTMARYMRR R+ P NI INCE TP+DL+ W + W F+ PS ANDFTAFDQ Sbjct: 1271 MLFGTMARYMRRMREIFQPKNIAINCEMTPEDLTDWAVGSAGQWKFAGPSLANDFTAFDQ 1330 Query: 1767 SQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECN 1946 SQDGAMLQFE+LKAK+ ++PE V++ YL IK + KIFLGTL+IMRLTGEGPTFDANTECN Sbjct: 1331 SQDGAMLQFEVLKAKHHSIPEDVLDAYLHIKTNSKIFLGTLTIMRLTGEGPTFDANTECN 1390 Query: 1947 IAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAE 2126 IA+TH +F+IP+GTAQ+YAGDD AI P + SF L++ ++ L++KPA QE+G WAE Sbjct: 1391 IAFTHAKFQIPKGTAQLYAGDDSAIDGNPPVRESFRLVEQKLKLRSKPAIAMQEKGDWAE 1450 Query: 2127 FCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQD 2306 FCGY ITPKG IKDP KLHASL L +KK G + NV+ +Y LD LAY D+L + Sbjct: 1451 FCGYRITPKGFIKDPKKLHASLVL---EKKRG---NLKNVLRSYELDLALAYQHRDELHE 1504 Query: 2307 LLS 2315 LLS Sbjct: 1505 LLS 1507 >ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase [Allium virus X] Length = 1701 Score = 871 bits (2251), Expect = 0.0 Identities = 442/773 (57%), Positives = 545/773 (70%), Gaps = 9/773 (1%) Frame = +3 Query: 24 LPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKET 203 LPE + + +LTT+ +R P + + +RA+A+ SDV+NSRTG L + WKE Sbjct: 913 LPEDTDTKPFTDLLTTM---HRMPCAYKVNNSRAKAYASDVENSRTGLLLRSQPDHWKEA 969 Query: 204 QTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPH 383 TM E +A+SVIHGAGGSGKS ALQ L+R+NP+L VV PTNELRLDWL KLP Sbjct: 970 LTMQAETADHTIALSVIHGAGGSGKSHALQQLIRENPELNFLVVCPTNELRLDWLAKLPK 1029 Query: 384 NPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHE 563 + +TFE+A S + +IF DY KLP GYIE + + L ILTGDPRQS++HE Sbjct: 1030 VELHRIKTFEKALADSTAATIIFGDYSKLPAGYIECYLAARPTATLAILTGDPRQSSYHE 1089 Query: 564 ANEEAXXXXXLS---------RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG 716 +NE A RYYINATHRN + LA LGVYS + ++ +P Sbjct: 1090 SNEGAMISQLAPSTSEFGQYCRYYINATHRNKQDLARMLGVYSERTGLTSISMSSRPLTD 1149 Query: 717 MHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVD 896 HLLVPS++KK + + G+K STYAGCQGITAPR+QILLD DTT+C EVLYTALSRAV Sbjct: 1150 THLLVPSIIKKRTYMELGYKTSTYAGCQGITAPRLQILLDCDTTLCADEVLYTALSRAVH 1209 Query: 897 SIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVED 1076 IHF+N+ A S AFW+KL ATPYLKTFL RE++++E VE+ Sbjct: 1210 GIHFINTGATSGAFWDKLNATPYLKTFLDFTREERLKESQPREQEPTEPEGPTTHFPVEN 1269 Query: 1077 KTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARL 1256 + L++ E L +K +REI HGHTNCVQ +D QLFSHQQAKD+ALLW TI+ARL Sbjct: 1270 EKFVLEEQVEELLEKHDREILRPDHGHTNCVQTEDAVIQLFSHQQAKDQALLWATIEARL 1329 Query: 1257 TISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSI 1436 IS P+AN+ EF AKK++GD+L+ +YH+AMKLP + F EDLW CA+EVQ TYL K I Sbjct: 1330 KISNPKANIAEFNAKKEIGDVLFEHYHQAMKLPDKPIPFMEDLWVACAQEVQGTYLSKPI 1389 Query: 1437 SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMA 1616 + +K GE RQSPDF ++ I +FLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMA Sbjct: 1390 NMLKNGEYRQSPDFDKNTIALFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTMA 1449 Query: 1617 RYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFE 1796 RYMRR R+A P IMINCEK PQ LS W+ NYW F+ +YANDFT FDQSQDGAMLQFE Sbjct: 1450 RYMRRMREAFQPPEIMINCEKDPQTLSHWIQNYWKFNSYAYANDFTQFDQSQDGAMLQFE 1509 Query: 1797 ILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEI 1976 ILKAK+ ++PEWV+EGYLDIK + K+F G LSIMRLTGEGPTFDANTECNIAYTH RF++ Sbjct: 1510 ILKAKHHSIPEWVLEGYLDIKTNAKVFSGVLSIMRLTGEGPTFDANTECNIAYTHLRFDV 1569 Query: 1977 PEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKG 2156 P+GTAQ+YAGDD A++ + PE+PSFA K ++ L +KPA Q+RG WAEFCGYLITP G Sbjct: 1570 PKGTAQLYAGDDSALSCLPPERPSFADFKQQLTLTSKPALFAQKRGFWAEFCGYLITPLG 1629 Query: 2157 LIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 2315 ++KDP KL A++ LA+ Q K + +++LD KLAY D L ++LS Sbjct: 1630 IMKDPAKLAATVVLAQKQNK------LHECWRSHALDLKLAYVHRDALTEVLS 1676 >ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1| replicase [Alternanthera mosaic virus] Length = 1541 Score = 869 bits (2246), Expect = 0.0 Identities = 449/783 (57%), Positives = 543/783 (69%), Gaps = 12/783 (1%) Frame = +3 Query: 3 RDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 182 + LPK + PE N P L K+L S R PTP+ P RA+A++SDVKNSR G L ++ Sbjct: 736 KSLPKCS-PEKVN-PSLLKMLN---SQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQ 790 Query: 183 TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLD 362 + W L EN LAISVIHGAGGSGKS+ALQ L+ NPD + +VLPTNELRLD Sbjct: 791 GKDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLD 850 Query: 363 WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 542 WLKKLP P +Q +TFE+A + P VIFDDYGKLP GYIEAF+ +S EL++LTGD Sbjct: 851 WLKKLPTFPADQIKTFEKALLAPTKPTVIFDDYGKLPAGYIEAFSFYMSSAELLVLTGDS 910 Query: 543 RQSTHHEANEEAXXXXX---------LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 695 +QS HHE+NE A SRYYINATHRN + LANKLGVYS + +T Sbjct: 911 KQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQ 970 Query: 696 GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 875 G P PG+HLLVPSL KK AF++ GHK STYAGCQG+TAPRVQILL +T+MC++EV+YT Sbjct: 971 GNHPVPGLHLLVPSLYKKQAFSEMGHKASTYAGCQGLTAPRVQILLSEETSMCSREVIYT 1030 Query: 876 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXX 1055 ALSRAV SIHFVN + AFW KLE+TPYLK FLS +RED Sbjct: 1031 ALSRAVHSIHFVNCGPNNQAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPK 1090 Query: 1056 XXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1235 V+ +D + + +K EREIF+E HGH+NCVQ +D Q+FSHQQAKDE LLW Sbjct: 1091 THIPVDSAMPIYEDLLDQMPEKHEREIFSEKHGHSNCVQTEDTFVQMFSHQQAKDETLLW 1150 Query: 1236 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1415 TI+ARL IS P+AN +EF KK +GD+L+ Y +AM LP E F LW C E+Q Sbjct: 1151 ATIEARLVISNPKANWQEFMEKKPIGDVLFGFYREAMGLPTEPIAFEPQLWESCIHEIQR 1210 Query: 1416 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1595 TYL K I+ +K G+ RQSPD+ + I +FLKSQWVKKMEKLGA KIKPGQTIASF Q V Sbjct: 1211 TYLAKPINMLKNGQARQSPDYDPNMISLFLKSQWVKKMEKLGALKIKPGQTIASFHQATV 1270 Query: 1596 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL---NYWDFSKPSYANDFTAFDQ 1766 ML+GTMARYMRR R+ P NI INCE TP+DL+ W + W F+ PS ANDFTAFDQ Sbjct: 1271 MLFGTMARYMRRMREIFQPKNIAINCEMTPEDLTDWAVGPAGQWKFAGPSLANDFTAFDQ 1330 Query: 1767 SQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECN 1946 SQDGAMLQFE+LKAK+ ++PE V++ YL IK + KIFLGTL+IMRLTGEGPTFDANTECN Sbjct: 1331 SQDGAMLQFEVLKAKHHSIPEDVLDAYLHIKTNSKIFLGTLAIMRLTGEGPTFDANTECN 1390 Query: 1947 IAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAE 2126 IA+TH +F+IP+GTAQ+YAGDD AI + SF L++ ++ L++KPA QE+G WAE Sbjct: 1391 IAFTHAKFQIPKGTAQLYAGDDSAIDGNPTVRESFRLVEQKLKLRSKPAIAMQEKGDWAE 1450 Query: 2127 FCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQD 2306 FCGY ITPKG IKDP KLHASL L K K + NV+ +Y LD LAY D+L + Sbjct: 1451 FCGYRITPKGFIKDPKKLHASLVLEKK------KGNLRNVLRSYELDLALAYQHRDELHE 1504 Query: 2307 LLS 2315 LLS Sbjct: 1505 LLS 1507