BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00006390
         (1995 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1077   0.0  
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1077   0.0  
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1077   0.0  
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1074   0.0  
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1073   0.0  
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1071   0.0  
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1068   0.0  
gb|AAX19931.1| viral replicase [Nandina mosaic virus]                1064   0.0  
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...  1061   0.0  
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   893   0.0  
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   827   0.0  
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   760   0.0  
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             730   0.0  
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   730   0.0  
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   648   0.0  
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               648   0.0  
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   640   0.0  
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   640   0.0  
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   639   e-180
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 639   e-180

>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1077 bits (2786), Expect = 0.0
 Identities = 542/664 (81%), Positives = 569/664 (85%)
 Frame = +3

Query: 3    HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAA 182
            H SL +    L   QL ALHELGN R GGPLLPK  P +  R                  
Sbjct: 463  HQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP 521

Query: 183  LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 362
                  +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A
Sbjct: 522  HKTTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRA 580

Query: 363  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKE 542
                HW  P + ++L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKE
Sbjct: 581  DGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKE 640

Query: 543  TQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLP 722
            TQTMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLP
Sbjct: 641  TQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLP 700

Query: 723  HNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHH 902
            HNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHH
Sbjct: 701  HNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHH 760

Query: 903  EANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 1082
            E+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP
Sbjct: 761  ESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 820

Query: 1083 GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV 1262
            GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAV
Sbjct: 821  GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAV 880

Query: 1263 DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVE 1442
            DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+                 VE
Sbjct: 881  DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVE 940

Query: 1443 DKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKAR 1622
            D TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI AR
Sbjct: 941  DGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINAR 1000

Query: 1623 LTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKS 1802
            LT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS
Sbjct: 1001 LTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKS 1060

Query: 1803 ISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM 1982
            +SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM
Sbjct: 1061 VSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM 1120

Query: 1983 ARYM 1994
            ARYM
Sbjct: 1121 ARYM 1124


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1077 bits (2784), Expect = 0.0
 Identities = 541/664 (81%), Positives = 569/664 (85%)
 Frame = +3

Query: 3    HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAA 182
            H SL +  + L   QL ALHELGN R GGPLLPK  P +  R                  
Sbjct: 463  HQSLSLKCSTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP 521

Query: 183  LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 362
                  +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A
Sbjct: 522  HKTTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRA 580

Query: 363  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKE 542
                HW  P + ++L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKE
Sbjct: 581  DGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKE 640

Query: 543  TQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLP 722
            TQTMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLP
Sbjct: 641  TQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLP 700

Query: 723  HNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHH 902
            HNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHH
Sbjct: 701  HNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHH 760

Query: 903  EANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 1082
            E+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP
Sbjct: 761  ESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 820

Query: 1083 GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV 1262
            GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAV
Sbjct: 821  GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAV 880

Query: 1263 DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVE 1442
            DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+                 VE
Sbjct: 881  DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVE 940

Query: 1443 DKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKAR 1622
            D TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI AR
Sbjct: 941  DGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINAR 1000

Query: 1623 LTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKS 1802
            LT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS
Sbjct: 1001 LTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKS 1060

Query: 1803 ISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM 1982
            +SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM
Sbjct: 1061 VSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM 1120

Query: 1983 ARYM 1994
            ARYM
Sbjct: 1121 ARYM 1124


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1077 bits (2784), Expect = 0.0
 Identities = 541/664 (81%), Positives = 569/664 (85%)
 Frame = +3

Query: 3    HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAA 182
            H SL +  + L   QL ALHELGN R GGPLLPK  P +  R                  
Sbjct: 463  HQSLSLKCSTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP 521

Query: 183  LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 362
                  +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A
Sbjct: 522  HKTTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRA 580

Query: 363  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKE 542
                HW  P + ++L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKE
Sbjct: 581  DGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKE 640

Query: 543  TQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLP 722
            TQTMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLP
Sbjct: 641  TQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLP 700

Query: 723  HNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHH 902
            HNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHH
Sbjct: 701  HNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHH 760

Query: 903  EANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 1082
            E+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP
Sbjct: 761  ESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 820

Query: 1083 GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV 1262
            GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAV
Sbjct: 821  GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAV 880

Query: 1263 DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVE 1442
            DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+                 VE
Sbjct: 881  DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVE 940

Query: 1443 DKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKAR 1622
            D TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI AR
Sbjct: 941  DGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINAR 1000

Query: 1623 LTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKS 1802
            LT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS
Sbjct: 1001 LTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKS 1060

Query: 1803 ISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM 1982
            +SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM
Sbjct: 1061 VSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM 1120

Query: 1983 ARYM 1994
            ARYM
Sbjct: 1121 ARYM 1124


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1074 bits (2778), Expect = 0.0
 Identities = 540/664 (81%), Positives = 568/664 (85%)
 Frame = +3

Query: 3    HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAA 182
            H SL +  + L   QL ALHELGN R G PLLPK  P +  R                  
Sbjct: 463  HQSLSLKCSTLPEHQLWALHELGNARCGAPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP 521

Query: 183  LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 362
                  +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A
Sbjct: 522  HKTTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRA 580

Query: 363  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKE 542
                HW  P + ++L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKE
Sbjct: 581  DGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKE 640

Query: 543  TQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLP 722
            TQTMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLP
Sbjct: 641  TQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLP 700

Query: 723  HNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHH 902
            HNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHH
Sbjct: 701  HNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHH 760

Query: 903  EANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 1082
            E+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP
Sbjct: 761  ESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 820

Query: 1083 GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV 1262
            GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAV
Sbjct: 821  GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAV 880

Query: 1263 DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVE 1442
            DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+                 VE
Sbjct: 881  DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVE 940

Query: 1443 DKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKAR 1622
            D TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI AR
Sbjct: 941  DGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINAR 1000

Query: 1623 LTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKS 1802
            LT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS
Sbjct: 1001 LTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKS 1060

Query: 1803 ISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM 1982
            +SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM
Sbjct: 1061 VSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM 1120

Query: 1983 ARYM 1994
            ARYM
Sbjct: 1121 ARYM 1124


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1073 bits (2775), Expect = 0.0
 Identities = 540/664 (81%), Positives = 567/664 (85%)
 Frame = +3

Query: 3    HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAA 182
            H SL +    L   QL ALHELGN R GGPLLPK  P +  R                  
Sbjct: 463  HQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP 521

Query: 183  LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 362
                  +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A
Sbjct: 522  HKTTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRA 580

Query: 363  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKE 542
                HW  P + ++L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKE
Sbjct: 581  DGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKE 640

Query: 543  TQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLP 722
            TQTMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLP
Sbjct: 641  TQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLP 700

Query: 723  HNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHH 902
            HNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHH
Sbjct: 701  HNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHH 760

Query: 903  EANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 1082
            E+NEEALISKL PAT IFSELSRYYINATHRNSK LANKLGVYSSNSCPLKVTYGFQPQP
Sbjct: 761  ESNEEALISKLPPATAIFSELSRYYINATHRNSKLLANKLGVYSSNSCPLKVTYGFQPQP 820

Query: 1083 GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV 1262
            GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAV
Sbjct: 821  GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAV 880

Query: 1263 DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVE 1442
            DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+                 VE
Sbjct: 881  DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVE 940

Query: 1443 DKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKAR 1622
            D TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI AR
Sbjct: 941  DGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINAR 1000

Query: 1623 LTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKS 1802
            LT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS
Sbjct: 1001 LTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKS 1060

Query: 1803 ISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM 1982
            +SQIKGGERRQSPDFHEH ILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM
Sbjct: 1061 VSQIKGGERRQSPDFHEHHILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM 1120

Query: 1983 ARYM 1994
            ARYM
Sbjct: 1121 ARYM 1124


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1072 bits (2771), Expect = 0.0
 Identities = 539/664 (81%), Positives = 568/664 (85%)
 Frame = +3

Query: 3    HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAA 182
            H SL +    L   QL ALHELGN R GGPLLPK  P +  R                  
Sbjct: 463  HQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP 521

Query: 183  LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 362
                  +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A
Sbjct: 522  HKTTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRA 580

Query: 363  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKE 542
                HW  P ++++L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKE
Sbjct: 581  DGHAHWQGPDMARILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKE 640

Query: 543  TQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLP 722
            TQ MLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDW KKLP
Sbjct: 641  TQAMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWPKKLP 700

Query: 723  HNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHH 902
            HNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHH
Sbjct: 701  HNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHH 760

Query: 903  EANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 1082
            E+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP+P
Sbjct: 761  ESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPRP 820

Query: 1083 GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV 1262
            GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAV
Sbjct: 821  GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAV 880

Query: 1263 DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVE 1442
            DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+                 VE
Sbjct: 881  DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVE 940

Query: 1443 DKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKAR 1622
            D TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI AR
Sbjct: 941  DGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINAR 1000

Query: 1623 LTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKS 1802
            LT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS
Sbjct: 1001 LTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKS 1060

Query: 1803 ISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM 1982
            +SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM
Sbjct: 1061 VSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM 1120

Query: 1983 ARYM 1994
            ARYM
Sbjct: 1121 ARYM 1124


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1068 bits (2761), Expect = 0.0
 Identities = 536/668 (80%), Positives = 567/668 (84%), Gaps = 4/668 (0%)
 Frame = +3

Query: 3    HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPK----ITPEEQDREXXXXXXXXXXXTK 170
            H SL +    L   QL ALHELGNTR GGPLLPK    +T  E   +            +
Sbjct: 463  HQSLSLKCPTLPEHQLWALHELGNTRCGGPLLPKGPAKLTTVEPCPDLPAENSANPEPPR 522

Query: 171  ASAALNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRD 350
             +        T  +P   DP TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+
Sbjct: 523  KTT------QTLDLPHPEDPTTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRE 576

Query: 351  LPKATLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQ 530
            LP+A    HW  P + ++++TLRS NR+PT W PDR+RA+AFTSDVKNSRTGKALHRE+Q
Sbjct: 577  LPRAEGHAHWQGPDMERIISTLRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRESQ 636

Query: 531  TWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWL 710
             WKETQTML +N   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWL
Sbjct: 637  VWKETQTMLAENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWL 696

Query: 711  KKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQ 890
            KKLPHNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFA+THASLELVILTGDPRQ
Sbjct: 697  KKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFALTHASLELVILTGDPRQ 756

Query: 891  STHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGF 1070
            STHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSN CPLKVTYGF
Sbjct: 757  STHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNPCPLKVTYGF 816

Query: 1071 QPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTAL 1250
            QPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTAL
Sbjct: 817  QPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTAL 876

Query: 1251 SRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXX 1430
            SRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+               
Sbjct: 877  SRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTATTAEAKPVAPPCTH 936

Query: 1431 XXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWET 1610
              VED TTTLDDFKE L DKF+REIF   HGHTNCVQ DDPTTQLFSHQQAKDEALLWET
Sbjct: 937  FPVEDGTTTLDDFKEELHDKFDREIFNPTHGHTNCVQTDDPTTQLFSHQQAKDEALLWET 996

Query: 1611 IKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTY 1790
            I ARLTIS PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTY
Sbjct: 997  INARLTISNPEANLAEFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWIRCAEEVQNTY 1056

Query: 1791 LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 1970
            LKKS++QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML
Sbjct: 1057 LKKSVAQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 1116

Query: 1971 YGTMARYM 1994
            YGTMARYM
Sbjct: 1117 YGTMARYM 1124


>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score = 1064 bits (2751), Expect = 0.0
 Identities = 534/664 (80%), Positives = 567/664 (85%)
 Frame = +3

Query: 3    HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAA 182
            HTSLKV    LS EQL ALHELGN+R GGP+LPK +                  T  S+ 
Sbjct: 468  HTSLKVVPQSLSPEQLSALHELGNSRCGGPMLPKRSSNH---------------THTSSD 512

Query: 183  LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 362
            L +  H    P        P  +   K   +GFEALEIQTDPSTG+ IMPITD R+LP+A
Sbjct: 513  LLRRRH----PRQQRSTNPPMGSLAAKAKRIGFEALEIQTDPSTGQPIMPITDTRELPRA 568

Query: 363  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKE 542
             +P HW+ P   K++ TLR+LNRFPT W PDRARARAFTSDVKNSRTGKALHRE+QTWKE
Sbjct: 569  IMPAHWDSPQFEKIIATLRNLNRFPTPWSPDRARARAFTSDVKNSRTGKALHRESQTWKE 628

Query: 543  TQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLP 722
            TQTMLTDN   + AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLP
Sbjct: 629  TQTMLTDNAEIHTAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLP 688

Query: 723  HNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHH 902
            HNPPEQFRTFERAFV S+ P+VIFDDYGKLPQGYIEAFAMTHA+LEL+ILTGDPRQSTHH
Sbjct: 689  HNPPEQFRTFERAFVSSRGPVVIFDDYGKLPQGYIEAFAMTHANLELIILTGDPRQSTHH 748

Query: 903  EANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 1082
            EANEEALISKL+PATT FSELSRYYINATHRNSKFLANKLG+YSSN CPLKVTYGFQPQP
Sbjct: 749  EANEEALISKLSPATTTFSELSRYYINATHRNSKFLANKLGIYSSNHCPLKVTYGFQPQP 808

Query: 1083 GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV 1262
            GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAV
Sbjct: 809  GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAV 868

Query: 1263 DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVE 1442
            DS HFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EFS                 VE
Sbjct: 869  DSNHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAPPDPPKSVMPPVTHFPVE 928

Query: 1443 DKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKAR 1622
            + TT LDDF+E L DKF+REIFTEAHGHTNCVQ DDPTTQLFSHQQAKDEALLWETIKAR
Sbjct: 929  ECTTALDDFREELHDKFDREIFTEAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETIKAR 988

Query: 1623 LTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKS 1802
            LTISTPEAN+EEFRAKKDLGDILW NYHKAM LPKEQP+FSE+LWTRCAEEVQNTYLKKS
Sbjct: 989  LTISTPEANIEEFRAKKDLGDILWTNYHKAMNLPKEQPDFSEELWTRCAEEVQNTYLKKS 1048

Query: 1803 ISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM 1982
            ++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM
Sbjct: 1049 LNQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM 1108

Query: 1983 ARYM 1994
            ARYM
Sbjct: 1109 ARYM 1112


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score = 1061 bits (2744), Expect = 0.0
 Identities = 526/664 (79%), Positives = 569/664 (85%)
 Frame = +3

Query: 3    HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAA 182
            HT LKV  + LS  QL A+H LG++R GGPLLP++T +    E           ++AS A
Sbjct: 466  HTQLKVLCSALSEGQLEAIHALGHSRCGGPLLPELTAKSTPVEQCPDLPPCPTKSQASPA 525

Query: 183  LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 362
             +     D  P   +P TLPWVAWLPKLNALGFEALE+Q DPSTGE+IMPITD ++LP+A
Sbjct: 526  SSNPSGPDAQPTAQNPETLPWVAWLPKLNALGFEALEVQHDPSTGEMIMPITDTQELPRA 585

Query: 363  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKE 542
            TLP HW    L ++L+TLRSLNRFPT W PDR RARAFTSDVKNSRTGKALHRE+QTWKE
Sbjct: 586  TLPAHWQGHNLERILSTLRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKALHRESQTWKE 645

Query: 543  TQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLP 722
            TQTMLT+N    LAISVIHGAGGSGKSQALQTLLRQ+  LPIEVVLPTNELRLDWLKKLP
Sbjct: 646  TQTMLTENTQTELAISVIHGAGGSGKSQALQTLLRQDHSLPIEVVLPTNELRLDWLKKLP 705

Query: 723  HNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHH 902
            HNPPEQFRTFERAFV S SP+VIFDDYGKLPQGY+EAFA+THA+LELVILTGDPRQSTHH
Sbjct: 706  HNPPEQFRTFERAFVSSHSPVVIFDDYGKLPQGYLEAFALTHANLELVILTGDPRQSTHH 765

Query: 903  EANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 1082
            E+NEEALISKL PATTI+S  SRYYINAT RNSKFLANKLGVYS+NSCPL VTYGFQP P
Sbjct: 766  ESNEEALISKLPPATTIYSAFSRYYINATLRNSKFLANKLGVYSANSCPLNVTYGFQPLP 825

Query: 1083 GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV 1262
            GLHLLVPSL+KKAAFTDAGHKVS+YAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV
Sbjct: 826  GLHLLVPSLMKKAAFTDAGHKVSSYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV 885

Query: 1263 DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVE 1442
            DSIHFVN+NAQSSAFWEKLEATPYLKTFLSLVREDKI EF                  VE
Sbjct: 886  DSIHFVNTNAQSSAFWEKLEATPYLKTFLSLVREDKITEFQAPADAPKPVTPPVTHFPVE 945

Query: 1443 DKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKAR 1622
            +  TTLDDFKE L DKF+REIFT   GHTNCVQ DDPTTQLFSHQQAKDEALLWE I+AR
Sbjct: 946  EPATTLDDFKEELRDKFDREIFTSDRGHTNCVQTDDPTTQLFSHQQAKDEALLWEMIRAR 1005

Query: 1623 LTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKS 1802
            L ISTPEAN+EEFRAKKDLGDILW NYH+AM LPKEQP+FSEDLW RCAEEVQNTYLKK+
Sbjct: 1006 LKISTPEANIEEFRAKKDLGDILWVNYHRAMGLPKEQPDFSEDLWNRCAEEVQNTYLKKT 1065

Query: 1803 ISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM 1982
            ++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAK+IKPGQTIASFQQHAVMLYGTM
Sbjct: 1066 MAQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKEIKPGQTIASFQQHAVMLYGTM 1125

Query: 1983 ARYM 1994
            ARYM
Sbjct: 1126 ARYM 1129


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  893 bits (2307), Expect = 0.0
 Identities = 457/665 (68%), Positives = 518/665 (77%), Gaps = 10/665 (1%)
 Frame = +3

Query: 30   DLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQ 209
            +LS +QL ALH LG+ R  G  LP  +P +   E           T ++A   +   T  
Sbjct: 447  NLSEDQLEALHVLGSLRTDGESLP--SPPKAPLETGPHPTP----TISAAGPTKTVPTPN 500

Query: 210  VPVNS---------DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 362
            V V++         DP TLPW AWLP L ALGFEA EIQTDP     IMPITD++ LP  
Sbjct: 501  VEVSANPLTGTPLPDPDTLPWKAWLPHLRALGFEASEIQTDPRDHSTIMPITDIQTLPHE 560

Query: 363  TLPEHWNEPG-LSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWK 539
            T  E+ +      KV+ TL+ LNR PT W PDR RARA+ SD+KNSRTGKALH+E+Q WK
Sbjct: 561  TFDEYDSTSSPFDKVVITLKQLNRSPTPWTPDRLRARAYASDIKNSRTGKALHKESQNWK 620

Query: 540  ETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKL 719
            ETQT LT+     L +SVIHGAGGSGKSQALQT+LR +PDLP+EVVLPTNELR DWL+KL
Sbjct: 621  ETQTRLTETSETRLGLSVIHGAGGSGKSQALQTMLRNHPDLPVEVVLPTNELRXDWLRKL 680

Query: 720  PHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 899
            PHNPPEQFRTFERAFV S +P+VIFDDYGKLPQG++EAFA+    L+L ILTGDPRQSTH
Sbjct: 681  PHNPPEQFRTFERAFVSSTAPVVIFDDYGKLPQGFLEAFALCRPGLKLAILTGDPRQSTH 740

Query: 900  HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 1079
            HE+NE+A+I++L PAT IFS L RYYINATHRN K LANKLGVYSSN  PL V+YGF+P+
Sbjct: 741  HESNEQAMIAQLEPATKIFSALCRYYINATHRNVKELANKLGVYSSNPSPLHVSYGFRPE 800

Query: 1080 PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRA 1259
            PGLHLLVPSLVKKAAF DAGHKVSTYAGCQGITAPKVQILLD+DTTMC+ EVLYTALSRA
Sbjct: 801  PGLHLLVPSLVKKAAFADAGHKVSTYAGCQGITAPKVQILLDSDTTMCSSEVLYTALSRA 860

Query: 1260 VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXV 1439
            VDSIHF+NSNAQSSAFWEKLEATPYLKTFLSLVRE K+ EF+                 V
Sbjct: 861  VDSIHFINSNAQSSAFWEKLEATPYLKTFLSLVREHKLEEFTAVEDPPQEVAPPVTHFPV 920

Query: 1440 EDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKA 1619
            E+ + TL   ++SL+DK++REI    HG TNCVQ +D T QLFSHQQAKDEALLWETI A
Sbjct: 921  ENASHTLGLIQDSLADKYDREILNTNHGFTNCVQTEDLTVQLFSHQQAKDEALLWETIDA 980

Query: 1620 RLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKK 1799
            RL +STPEANL EF AKKDLGD+LW NYH+AMKLPKEQP+FS +LW RCA EVQ TYL K
Sbjct: 981  RLRLSTPEANLAEFHAKKDLGDVLWENYHRAMKLPKEQPDFSPELWERCAAEVQQTYLSK 1040

Query: 1800 SISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT 1979
            S+ QIKGGERRQSPDF E++ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGT
Sbjct: 1041 SLQQIKGGERRQSPDFPENKILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQAAVMLYGT 1100

Query: 1980 MARYM 1994
            MARYM
Sbjct: 1101 MARYM 1105


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 711

 Score =  827 bits (2135), Expect = 0.0
 Identities = 404/455 (88%), Positives = 424/455 (93%)
 Frame = +3

Query: 630  LQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGK 809
            LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYGK
Sbjct: 1    LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60

Query: 810  LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINAT 989
            LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINAT
Sbjct: 61   LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINAT 120

Query: 990  HRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQ 1169
            HRNSKFLANKLGVYSSNSCPLKVTYG QPQPGLHLLVPSL+KKAAFTDAGHKVSTYAGCQ
Sbjct: 121  HRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQ 180

Query: 1170 GITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFL 1349
            GITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFL
Sbjct: 181  GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFL 240

Query: 1350 SLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 1529
            SLVRED++AEFS                 VED TTTLDDF+E L DKF+REIF +AHGHT
Sbjct: 241  SLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGHT 300

Query: 1530 NCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHK 1709
            NCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAKKDLGDILW NY K
Sbjct: 301  NCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLGDILWENYRK 360

Query: 1710 AMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWV 1889
            AMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSPDFHEHQILIFLKSQWV
Sbjct: 361  AMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFLKSQWV 420

Query: 1890 KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYM 1994
            KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYM
Sbjct: 421  KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYM 455


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  760 bits (1963), Expect = 0.0
 Identities = 385/639 (60%), Positives = 468/639 (73%), Gaps = 4/639 (0%)
 Frame = +3

Query: 90   PLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPV----NSDPATLPWVAWL 257
            P LP ++PE + R               +      ++T+ V      N+  A LPW  W+
Sbjct: 566  PTLP-LSPELEKRHEALKSKAESSEASKTEPRKDENYTEMVNKTLIENAKEAGLPWAVWM 624

Query: 258  PKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFP 437
            PKLNALGFEA E Q  P T  +IMPITD+    K  +P H       ++L  L++L+R P
Sbjct: 625  PKLNALGFEAKEKQISPITKSMIMPITDI----KTGIPVHRETKAPQELLDLLKALSRMP 680

Query: 438  TSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSG 617
            T W PD  RA++FTSD+KN RTGK L +E+Q+WKE QT+  D+    + +SVIHGAGGSG
Sbjct: 681  TLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRPVPLSVIHGAGGSG 740

Query: 618  KSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFD 797
            KS ALQ LLR +P+LPI+V+LPTNELR+DWL KLP N PE FRTFE+A++ + +P +I D
Sbjct: 741  KSAALQDLLRDHPELPIQVILPTNELRMDWLSKLPRNRPENFRTFEKAYLQTNAPSIIMD 800

Query: 798  DYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYY 977
            DYGKLPQGY+EAFA+TH ++EL++LTGD +QS HHE NE+A+I++L P+T IFS+ SRYY
Sbjct: 801  DYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSVHHETNEQAMIAQLEPSTQIFSQFSRYY 860

Query: 978  INATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTY 1157
            INATHRN+K LAN LGVYS N+  LK+T+GFQP   +HLLVPSL+KKAAF++AGHK STY
Sbjct: 861  INATHRNAKKLANMLGVYSDNNKELKITHGFQPIKDIHLLVPSLIKKAAFSEAGHKTSTY 920

Query: 1158 AGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYL 1337
            AGCQGITA K+QILLD++T MC++EVLYTALSRAVDSIHF+N+   SS FWEKLEATPYL
Sbjct: 921  AGCQGITARKLQILLDSNTPMCSQEVLYTALSRAVDSIHFINTAPTSSNFWEKLEATPYL 980

Query: 1338 KTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEA 1517
            KTFLS+VREDKI E+                  VE+  T L++F E L+ K EREIF E+
Sbjct: 981  KTFLSMVREDKILEWRPKEPEPAKEEPPKTHFPVENGNTILEEFTEELAQKHEREIFNES 1040

Query: 1518 HGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWA 1697
            HGHTNCVQ D+   Q  SHQQAKDEALLWETIKARL IS  + N  EF  KKD+GDILW 
Sbjct: 1041 HGHTNCVQTDNKIIQTLSHQQAKDEALLWETIKARLVISHKQHNWTEFVKKKDIGDILWL 1100

Query: 1698 NYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLK 1877
            NY +AM LP++   F E+LW   A E+Q+TYL KS   +K GERRQSPDF E  ILIFLK
Sbjct: 1101 NYKRAMHLPEDPIPF-EELWELAAREIQHTYLSKSTQMLKNGERRQSPDFGEKDILIFLK 1159

Query: 1878 SQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYM 1994
            SQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYM
Sbjct: 1160 SQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTMARYM 1198


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  730 bits (1885), Expect = 0.0
 Identities = 372/595 (62%), Positives = 433/595 (72%), Gaps = 1/595 (0%)
 Frame = +3

Query: 213  PVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEP 389
            PV++    LPW  W P L  LGF+A EIQ  P    VIMPIT+ V  LP + +  H    
Sbjct: 543  PVSTLEDALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH---- 598

Query: 390  GLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNV 569
                V+  L  L+R PT W P   RAR++TSD+KN RTG  L +E+ TWKETQT+  + +
Sbjct: 599  --ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 656

Query: 570  TANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRT 749
               + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P   PE+ +T
Sbjct: 657  EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKT 716

Query: 750  FERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALIS 929
            +ERAF    SP+V+FDDYGKLP GYIEA+      +ELVILTGD RQSTHHE NE+A+IS
Sbjct: 717  YERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMIS 776

Query: 930  KLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSL 1109
            +LAPAT +F  L RYYINATHRN + LANKL VYS      K+T GFQP   LHLLVPSL
Sbjct: 777  QLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSL 836

Query: 1110 VKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSN 1289
            +KK+A+ + GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYTALSRAV SIHF+N+ 
Sbjct: 837  LKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTG 896

Query: 1290 AQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDF 1469
               S+FWEKLEATPYLK FLS VRE+ IA                    VE+ +  L  +
Sbjct: 897  PTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPNADPRPDPEPKTHFPVENTSCALGAY 956

Query: 1470 KESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN 1649
             E + +KFEREIFTE  GHTNCVQ  +P  QLF HQQAKDEALLWETIKARLTIS+PEAN
Sbjct: 957  MEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEAN 1016

Query: 1650 LEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGER 1829
             EEF  KKD+GDILW +Y KAM LP+E   FSEDLW   A EVQNTYL K ++ +K GER
Sbjct: 1017 WEEFYRKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGER 1076

Query: 1830 RQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYM 1994
            RQSPDF +HQIL+FLKSQWVKKMEKLG  KIK GQTIASFQQHAVMLYGTMARYM
Sbjct: 1077 RQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYM 1131


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  730 bits (1885), Expect = 0.0
 Identities = 372/595 (62%), Positives = 433/595 (72%), Gaps = 1/595 (0%)
 Frame = +3

Query: 213  PVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEP 389
            PV++    LPW  W P L  LGF+A EIQ  P    VIMPIT+ V  LP + +  H    
Sbjct: 543  PVSALENALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH---- 598

Query: 390  GLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNV 569
                V+  L  L+R PT W P   RAR++TSD+KN RTG  L +E+ TWKETQT+  + +
Sbjct: 599  --ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 656

Query: 570  TANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRT 749
               + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P   PE+ +T
Sbjct: 657  EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKT 716

Query: 750  FERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALIS 929
            +ERAF    SP+V+FDDYGKLP GYIEA+      +ELVILTGD RQSTHHE NE+A+IS
Sbjct: 717  YERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMIS 776

Query: 930  KLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSL 1109
            +LAPAT +F  L RYYINATHRN + LANKL VYS      K+T GFQP   LHLLVPSL
Sbjct: 777  QLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSL 836

Query: 1110 VKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSN 1289
            +KK+A+ + GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYTALSRAV SIHF+N+ 
Sbjct: 837  LKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTG 896

Query: 1290 AQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDF 1469
               S+FWEKLEATPYLK FLS VRE+ IA                    VE+ +  L  +
Sbjct: 897  PTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPKTHFPVENTSCALGAY 956

Query: 1470 KESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN 1649
             E + +KFEREIFTE  GHTNCVQ  +P  QLF HQQAKDEALLWETIKARLTIS+PEAN
Sbjct: 957  MEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEAN 1016

Query: 1650 LEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGER 1829
             EEF  KKD+GDILW +Y KAM LP+E   FSEDLW   A EVQNTYL K ++ +K GER
Sbjct: 1017 WEEFYKKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGER 1076

Query: 1830 RQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYM 1994
            RQSPDF +HQIL+FLKSQWVKKMEKLG  KIK GQTIASFQQHAVMLYGTMARYM
Sbjct: 1077 RQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYM 1131


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
            RecName: Full=RNA replication protein; AltName: Full=176
            kDa protein; AltName: Full=ORF1 protein; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
            protein product [Papaya mosaic virus]
            gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
            virus]
          Length = 1547

 Score =  648 bits (1671), Expect = 0.0
 Identities = 333/586 (56%), Positives = 411/586 (70%)
 Frame = +3

Query: 237  LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTL 416
            LPW AW+PKL  LGF+  ++Q DP+ G +I PI ++R +PK   PE   E     V  TL
Sbjct: 707  LPWKAWIPKLQNLGFQGRQLQYDPN-GALISPIEEIRSMPKCK-PEGVPEV----VYKTL 760

Query: 417  RSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVI 596
              L R PT + P+  RARA+TSDVKN R G  L ++ + W      L +     LAISVI
Sbjct: 761  DGLARAPTPYSPNPIRARAYTSDVKNCRIGALLRQQGKEWGCRFDALVEAGKRELAISVI 820

Query: 597  HGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 776
            HGAGGSGKSQALQTL++ NP+L I VVLPTNELRLDWL+KLP  P E+F+TFE+A +   
Sbjct: 821  HGAGGSGKSQALQTLIKDNPELDITVVLPTNELRLDWLRKLPKAPQEKFKTFEKALLAPP 880

Query: 777  SPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIF 956
            +PIVIFDDYGKLP GY+EAF +  ++++L+ILTGD +QS HHE+NE A  S + P     
Sbjct: 881  TPIVIFDDYGKLPAGYVEAFCLYFSTVQLIILTGDCKQSVHHESNENATTSSIEPLVKEA 940

Query: 957  SELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDA 1136
            SEL RYYINATHRN K LANKLGVYS  +   +VT+G  P PGLH+LVPSL KK AF++ 
Sbjct: 941  SELCRYYINATHRNKKDLANKLGVYSEKTGLTEVTHGTTPIPGLHMLVPSLYKKQAFSEM 1000

Query: 1137 GHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEK 1316
            GHKVSTYAGCQGITAPK+QILL  +T++C++EVLYTALSRAV SIHFVN++  + AFW+K
Sbjct: 1001 GHKVSTYAGCQGITAPKIQILLTEETSLCSREVLYTALSRAVHSIHFVNASPNNQAFWKK 1060

Query: 1317 LEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFE 1496
            LE TPYLK FLS +RE+                        ED     ++  E + +K E
Sbjct: 1061 LECTPYLKAFLSTLREEVAQPIEEKKAEPTPVEPPRTHIAKEDAMVEYENVIEKMPEKHE 1120

Query: 1497 REIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKD 1676
            REIF+E HGH+NCVQ +DP  Q+FSHQQAKD+ LLW TI+ARL IS P+AN +E+  K+ 
Sbjct: 1121 REIFSEKHGHSNCVQTEDPFIQMFSHQQAKDDTLLWATIEARLVISNPKANWQEYLEKRP 1180

Query: 1677 LGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEH 1856
            +G++L+ +Y +AM LPK    F EDLW     EVQ TYL K  + IK G  RQSPD+  +
Sbjct: 1181 VGEVLFESYKRAMHLPKMPIPFEEDLWNSSMHEVQKTYLSKPENMIKNGMARQSPDYDPN 1240

Query: 1857 QILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYM 1994
             I +FLKSQWVKKMEKLGA KIKPGQTIASF Q  VML+GTMARYM
Sbjct: 1241 VISLFLKSQWVKKMEKLGAIKIKPGQTIASFHQATVMLFGTMARYM 1286


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  648 bits (1671), Expect = 0.0
 Identities = 326/589 (55%), Positives = 415/589 (70%), Gaps = 3/589 (0%)
 Frame = +3

Query: 237  LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPK--ATLPEHWNEPGLSKVLT 410
            LPW  WL  LN+L F+  +   D   G++I PI D + LPK    LPE         +L 
Sbjct: 840  LPWKLWLGVLNSLNFKGNQRILD-GNGQLIFPIKDNKSLPKYEGRLPE-------PHLLE 891

Query: 411  TLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTAN-LAI 587
             L+  +R+P  +  D  + RAF SDVKN+RTG    ++   WKE  T + ++     +A+
Sbjct: 892  QLKEASRYPCPYRIDHKQGRAFASDVKNNRTGSLTTKQPDEWKEAFTRMAESPEQRTVAL 951

Query: 588  SVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV 767
            +VIHGAGGSGKSQ LQ  L +NP+  I  +LPTNELR DWL KLP  P    +TFERA +
Sbjct: 952  TVIHGAGGSGKSQLLQRYLMENPECKINTILPTNELRNDWLTKLPKMPLTAIQTFERALI 1011

Query: 768  CSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPAT 947
              + P+VIFDDY KLP GYI+AF   H ++E  ILTGDPRQST HE+NE+A+I+ L+ +T
Sbjct: 1012 SPQKPVVIFDDYSKLPAGYIDAFLSLHKNVEWAILTGDPRQSTFHESNEQAMINHLSKST 1071

Query: 948  TIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAF 1127
              FS+ SRYYINATHRN + LA  LGVYS  +    ++   +P+P  HLLVPSL+KK ++
Sbjct: 1072 EHFSQFSRYYINATHRNKQDLARFLGVYSEKTGLTSISMSSRPEPDWHLLVPSLIKKRSY 1131

Query: 1128 TDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAF 1307
            T+ G+K STYAGCQGITA +VQ+LLD DTT+C+ +VLYTALSRAV ++HF+N++A SSAF
Sbjct: 1132 TEMGYKTSTYAGCQGITADRVQVLLDTDTTLCSDQVLYTALSRAVHAVHFINTSATSSAF 1191

Query: 1308 WEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSD 1487
            W+KL +TPYLKTFLS +RED++ E                   VE++  +L+D  E L +
Sbjct: 1192 WDKLNSTPYLKTFLSTLREDRLREEGPKPETPEEPKPATTHFPVENENLSLEDKVEELLE 1251

Query: 1488 KFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRA 1667
            K ERE+++  HG++NCVQ DDP  QLFSHQQAKD+ LLW TI+ARL IS P+AN+EEFR 
Sbjct: 1252 KHERELYSSDHGYSNCVQTDDPVVQLFSHQQAKDQTLLWATIEARLKISNPKANMEEFRM 1311

Query: 1668 KKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDF 1847
            KK++GD+LW NY +AMKLP +  EFS +LW  CAEEVQ TYL K ++ IK GE RQSPDF
Sbjct: 1312 KKNVGDVLWLNYKRAMKLPDKPIEFSHELWHACAEEVQKTYLSKPLNMIKNGENRQSPDF 1371

Query: 1848 HEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYM 1994
             +H I +FLKSQWVKK+EKLGA KIKPGQTIASFQQ  VMLYGTMARYM
Sbjct: 1372 DKHTISLFLKSQWVKKLEKLGAPKIKPGQTIASFQQATVMLYGTMARYM 1420


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  640 bits (1652), Expect = 0.0
 Identities = 330/590 (55%), Positives = 404/590 (68%)
 Frame = +3

Query: 225  DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 404
            +P  LPW AWL KL  LGF  +++Q DP+ G +I PI  V+ LPK + PE  N P L K+
Sbjct: 697  EPDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEKVN-PSLLKM 753

Query: 405  LTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLA 584
            L       R PT + P   RA+A++SDVKNSR G  L ++ + W      L +N    LA
Sbjct: 754  LDDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 585  ISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 764
            ISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 765  VCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPA 944
            +    P VIFDDYGKLP GYIE+F+   +S EL++LTGD +QS HHE+NE A+ S + P 
Sbjct: 871  LAPTKPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPF 930

Query: 945  TTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAA 1124
            T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PGLHLLVPSL KK A
Sbjct: 931  TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQA 990

Query: 1125 FTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSA 1304
            F++ GHKVSTYAGCQG+TAP+VQILL  +T+MC++EV+YTALSRAV SIHFVN +  + A
Sbjct: 991  FSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCSPNNQA 1050

Query: 1305 FWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLS 1484
            FW KLE+TPYLK FLS +RED                       V+      +D  E + 
Sbjct: 1051 FWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDILEQMP 1110

Query: 1485 DKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFR 1664
            +K EREIF+E HGH+NCVQ +D   Q+FSHQQAKDE LLW TI+ARL +S P+AN +EF 
Sbjct: 1111 EKHEREIFSEKHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIEARLVLSNPKANWQEFM 1170

Query: 1665 AKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPD 1844
             KK +GD+L+  Y +AM LP E   F   LW  C  EVQ TYL K I+ +K G+ RQSPD
Sbjct: 1171 EKKPIGDVLFGFYREAMGLPTEPIAFEPQLWESCIHEVQRTYLAKPINMLKNGQARQSPD 1230

Query: 1845 FHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYM 1994
            +  + I +FLKSQWVKKMEKLGA KIKPGQTIASF Q  VML+GTMARYM
Sbjct: 1231 YDPNMISLFLKSQWVKKMEKLGALKIKPGQTIASFHQATVMLFGTMARYM 1280


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
            replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  640 bits (1650), Expect = 0.0
 Identities = 329/590 (55%), Positives = 402/590 (68%)
 Frame = +3

Query: 225  DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 404
            +P  LPW AWL KL  LGF   ++Q DP+ G +I PI  ++ LPK + PE  N P L K+
Sbjct: 697  EPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKM 753

Query: 405  LTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLA 584
            L    S  R PT + P   RA+A++SDVKNSR G  L ++ + W      L +N    LA
Sbjct: 754  LN---SQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 585  ISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 764
            ISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 765  VCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPA 944
            +    P VIFDDYGKLP GYIEAF+   +S EL++LTGD +QS HHE+NE A+ S + P 
Sbjct: 871  LAPTKPTVIFDDYGKLPAGYIEAFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPF 930

Query: 945  TTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAA 1124
            T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PGLHLLVPSL KK A
Sbjct: 931  TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQA 990

Query: 1125 FTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSA 1304
            F++ GHK STYAGCQG+TAP+VQILL  +T+MC++EV+YTALSRAV SIHFVN    + A
Sbjct: 991  FSEMGHKASTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNNQA 1050

Query: 1305 FWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLS 1484
            FW KLE+TPYLK FLS +RED                       V+      +D  + + 
Sbjct: 1051 FWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDLLDQMP 1110

Query: 1485 DKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFR 1664
            +K EREIF+E HGH+NCVQ +D   Q+FSHQQAKDE LLW TI+ARL IS P+AN +EF 
Sbjct: 1111 EKHEREIFSEKHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIEARLVISNPKANWQEFM 1170

Query: 1665 AKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPD 1844
             KK +GD+L+  Y +AM LP E   F   LW  C  E+Q TYL K I+ +K G+ RQSPD
Sbjct: 1171 EKKPIGDVLFGFYREAMGLPTEPIAFEPQLWESCIHEIQRTYLAKPINMLKNGQARQSPD 1230

Query: 1845 FHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYM 1994
            +  + I +FLKSQWVKKMEKLGA KIKPGQTIASF Q  VML+GTMARYM
Sbjct: 1231 YDPNMISLFLKSQWVKKMEKLGALKIKPGQTIASFHQATVMLFGTMARYM 1280


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
            [Allium virus X]
          Length = 1701

 Score =  639 bits (1648), Expect = e-180
 Identities = 330/611 (54%), Positives = 414/611 (67%), Gaps = 1/611 (0%)
 Frame = +3

Query: 165  TKASAALNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPST-GEVIMPITD 341
            T+ S     G H    P N  P  LPW  W+PKLNALGF  L   +DP    ++I PIT 
Sbjct: 846  TETSVRDASGFHVAPPPENPAPP-LPWEQWIPKLNALGFSGLARISDPQDKDQLICPITC 904

Query: 342  VRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHR 521
            ++      LPE  +    + +LTT+   +R P ++  + +RA+A+ SDV+NSRTG  L  
Sbjct: 905  IKSGFGIFLPEDTDTKPFTDLLTTM---HRMPCAYKVNNSRAKAYASDVENSRTGLLLRS 961

Query: 522  ETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRL 701
            +   WKE  TM  +     +A+SVIHGAGGSGKS ALQ L+R+NP+L   VV PTNELRL
Sbjct: 962  QPDHWKEALTMQAETADHTIALSVIHGAGGSGKSHALQQLIRENPELNFLVVCPTNELRL 1021

Query: 702  DWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 881
            DWL KLP     + +TFE+A   S +  +IF DY KLP GYIE +     +  L ILTGD
Sbjct: 1022 DWLAKLPKVELHRIKTFEKALADSTAATIIFGDYSKLPAGYIECYLAARPTATLAILTGD 1081

Query: 882  PRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVT 1061
            PRQS++HE+NE A+IS+LAP+T+ F +  RYYINATHRN + LA  LGVYS  +    ++
Sbjct: 1082 PRQSSYHESNEGAMISQLAPSTSEFGQYCRYYINATHRNKQDLARMLGVYSERTGLTSIS 1141

Query: 1062 YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 1241
               +P    HLLVPS++KK  + + G+K STYAGCQGITAP++QILLD DTT+C  EVLY
Sbjct: 1142 MSSRPLTDTHLLVPSIIKKRTYMELGYKTSTYAGCQGITAPRLQILLDCDTTLCADEVLY 1201

Query: 1242 TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 1421
            TALSRAV  IHF+N+ A S AFW+KL ATPYLKTFL   RE+++ E              
Sbjct: 1202 TALSRAVHGIHFINTGATSGAFWDKLNATPYLKTFLDFTREERLKESQPREQEPTEPEGP 1261

Query: 1422 XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALL 1601
                 VE++   L++  E L +K +REI    HGHTNCVQ +D   QLFSHQQAKD+ALL
Sbjct: 1262 TTHFPVENEKFVLEEQVEELLEKHDREILRPDHGHTNCVQTEDAVIQLFSHQQAKDQALL 1321

Query: 1602 WETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 1781
            W TI+ARL IS P+AN+ EF AKK++GD+L+ +YH+AMKLP +   F EDLW  CA+EVQ
Sbjct: 1322 WATIEARLKISNPKANIAEFNAKKEIGDVLFEHYHQAMKLPDKPIPFMEDLWVACAQEVQ 1381

Query: 1782 NTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHA 1961
             TYL K I+ +K GE RQSPDF ++ I +FLKSQWVKKMEKLGA KIKPGQTIASFQQ A
Sbjct: 1382 GTYLSKPINMLKNGEYRQSPDFDKNTIALFLKSQWVKKMEKLGAPKIKPGQTIASFQQSA 1441

Query: 1962 VMLYGTMARYM 1994
            VMLYGTMARYM
Sbjct: 1442 VMLYGTMARYM 1452


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  639 bits (1647), Expect = e-180
 Identities = 329/590 (55%), Positives = 403/590 (68%)
 Frame = +3

Query: 225  DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 404
            +P  LPW AWL KL  LGF   ++Q DP+ G +I PI  ++ LPK + PE  N P L K+
Sbjct: 697  EPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKM 753

Query: 405  LTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLA 584
            L       R PT + P   RA+A++SDVKNSR G  L ++ + W      L +N    LA
Sbjct: 754  LNDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 585  ISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 764
            ISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 765  VCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPA 944
            +    P VIFDDYGKLP GYIEAF+   +S+EL++LTGD +QS HHE+NE A+ S + P 
Sbjct: 871  LAPIKPTVIFDDYGKLPAGYIEAFSCYMSSVELLVLTGDSKQSVHHESNENAMSSLIEPF 930

Query: 945  TTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAA 1124
            T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PGLHLLVPSL KK A
Sbjct: 931  TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKEA 990

Query: 1125 FTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSA 1304
            F++ GHKVSTYAGCQG+TAP+VQILL  +T+MC++EV+YTALSRAV SIHFVN    + A
Sbjct: 991  FSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNNQA 1050

Query: 1305 FWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLS 1484
            FW KLE+TPYLK FLS +RED                       V+      +D  + + 
Sbjct: 1051 FWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDLLDQMP 1110

Query: 1485 DKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFR 1664
            +K EREIF+E HGH+NCVQ +D   Q+FSHQQAKDE LLW TI+ARL IS P+AN +EF 
Sbjct: 1111 EKHEREIFSERHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIEARLVISNPKANWQEFM 1170

Query: 1665 AKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPD 1844
             K+ +GD+L+  Y +AM LP E   F   LW  C  EVQ TYL K I+ +K G+ RQSPD
Sbjct: 1171 EKRPIGDVLFGFYREAMGLPTEPIAFEPQLWESCIHEVQRTYLAKPINMLKNGQARQSPD 1230

Query: 1845 FHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYM 1994
            +  + I +FLKSQWVKKMEKLGA KIKPGQTIASF Q  VML+GTMARYM
Sbjct: 1231 YDPNMISLFLKSQWVKKMEKLGALKIKPGQTIASFHQATVMLFGTMARYM 1280