BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00006279
         (1501 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC49502.1| Pol [Zea mays]                                         332   e-126
gb|ABF67946.1| putative Opie4 pol protein [Zea mays]                  328   e-126
gb|AEJ07931.1| Opie3 pol protein [Zea mays subsp. mexicana]           332   e-126
gb|AAL66759.1|AF464738_10 putative pol protein [Zea mays]             330   e-125
gb|AEJ07944.1| Opie1 putative pol protein [Zea diploperennis]         332   e-125
gb|AEJ07927.1| Opie2 pol protein [Zea mays subsp. mexicana]           329   e-125
gb|ABF67947.1| Opie2 pol protein [Zea mays]                           329   e-125
gb|AEJ07899.1| Opie3 putative pol protein [Zea mays subsp. mexic...   328   e-125
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]                337   e-124
gb|ABF67921.1| Ji1 putative pol protein [Zea mays]                    339   e-124
gb|ABF67934.1| Opie3 pol polyprotein [Zea mays]                       326   e-124
gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]         338   e-123
gb|AAP53706.1| retrotransposon protein, putative, unclassified [...   342   e-123
gb|AAD20307.1| copia-type pol polyprotein [Zea mays]                  335   e-123
gb|AAM94552.1| putative polyprotein [Oryza sativa Japonica Group]     338   e-122
gb|ABG66113.1| retrotransposon protein, putative, Ty1-copia subc...   337   e-122
emb|CAH66897.1| OSIGBa0099L20.12 [Oryza sativa Indica Group]          343   e-122
gb|AAO37468.1| putative polyprotein [Oryza sativa Japonica Group]     343   e-121
gb|ABF96984.1| retrotransposon protein, putative, Ty1-copia subc...   343   e-121
gb|AAL75483.1|AF466202_9 putative pol protein [Zea mays]              334   e-121

>gb|AAC49502.1| Pol [Zea mays]
          Length = 1068

 Score =  332 bits (851), Expect(3) = e-126
 Identities = 162/354 (45%), Positives = 237/354 (66%)
 Frame = -1

Query: 1099 QESSKDWYGKLDSFLKSKGFIKGINDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHD 920
            +++ + WY  L  FL +  F  G  D T +    +  + + ++YVDDI+FG+T++  C +
Sbjct: 709  KQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEE 768

Query: 919  FSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMA 740
            FS  MT +FEMSM   L +FLG Q++Q+++G  +SQ  Y +++L++FGM   KP  TPM 
Sbjct: 769  FSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMG 828

Query: 739  ARLVLHKDENGKSVDKTQYRSMIGCLMYATASRSEITFAVSLVSRFQESPKDCHLIAVKR 560
                   ++ GKSVD+  YRSMIG L+Y  ASR +I  +V + +RFQ  PK+CHL+AVKR
Sbjct: 829  TDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKR 888

Query: 559  IMRYLKGTLDLGIWYGRGKGINLIGFSDADWAGDHNDRKSTSGQCFMLGENLITWSSRKQ 380
            I+RYL  T   G+WY +G   +L+G+SD+D+AG   DRKSTSG C  LG +L++W+S+KQ
Sbjct: 889  ILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQ 948

Query: 379  ECVALSTVESEYIAASQCTTQAVWLKNWLANLGFHIIEPIPIYCDNQSAISMSKNSVMHK 200
              VALST E+EY+AA QC  Q +W++  L + G++ +  +P+ CDN+SAI M++N V H 
Sbjct: 949  TSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYN-LSKVPLLCDNESAIRMAENPVEHS 1007

Query: 199  RTKHIDIRYHYICQKVHDKIISI*YVSTWNQLADIFTKALAKDRFLYLRNKLNM 38
            RTKHIDIR+H++        I + +VST NQLADIFTK L +  F  LR++LN+
Sbjct: 1008 RTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDEKTFCRLRSELNV 1061



 Score =  131 bits (329), Expect(3) = e-126
 Identities = 62/94 (65%), Positives = 77/94 (81%)
 Frame = -2

Query: 1365 RARIVAKGYKQVAGIDYEETFAPVARLEVVHTLITLAARLNIKLYQMDVKEAFLNGNLEE 1186
            +AR+VAKGY QVAG+D+EETFAPVARLE +  L+  AA  + +LYQMDVK AFLNG ++E
Sbjct: 620  KARLVAKGYAQVAGLDFEETFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKE 679

Query: 1185 EVYMEQPEGFEDEDHPSYVCHLKKALNGLKKAPK 1084
            EVY+EQP GFEDE +P +VC L KAL GLK+AP+
Sbjct: 680  EVYVEQPPGFEDERYPDHVCKLSKALYGLKQAPR 713



 Score = 38.9 bits (89), Expect(3) = e-126
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -3

Query: 1499 MKDEIDQIKRTCTWLLVPRTFEMNVISCKWVFRN 1398
            M++E++  KR   W LVPR  + NV+  KWVFRN
Sbjct: 576  MQEELNNFKRNEVWTLVPRP-KQNVVGTKWVFRN 608


>gb|ABF67946.1| putative Opie4 pol protein [Zea mays]
          Length = 1068

 Score =  328 bits (842), Expect(3) = e-126
 Identities = 161/354 (45%), Positives = 235/354 (66%)
 Frame = -1

Query: 1099 QESSKDWYGKLDSFLKSKGFIKGINDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHD 920
            +++ + WY  L   L    F  G  D T +    +  + + ++YVDDI+FG+T++  C +
Sbjct: 709  KQAPRAWYECLRDILIVNAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEE 768

Query: 919  FSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMA 740
            FS  MT +FEMSM   L +FLG Q++Q+++G  +SQ  Y +++L++FGM   KP  TPM 
Sbjct: 769  FSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMG 828

Query: 739  ARLVLHKDENGKSVDKTQYRSMIGCLMYATASRSEITFAVSLVSRFQESPKDCHLIAVKR 560
                   ++ GKSVD+  YRSMIG L+Y  ASR +I  +V + +RFQ  PK+CHL+AVKR
Sbjct: 829  TDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKR 888

Query: 559  IMRYLKGTLDLGIWYGRGKGINLIGFSDADWAGDHNDRKSTSGQCFMLGENLITWSSRKQ 380
            I+RYL  T   G+WY +G   +L+G+SD+D+AG   DRKSTSG C  LG +L++W+S+KQ
Sbjct: 889  ILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQ 948

Query: 379  ECVALSTVESEYIAASQCTTQAVWLKNWLANLGFHIIEPIPIYCDNQSAISMSKNSVMHK 200
              VALST E+EY+AA QC  Q +W++  L + G++ +  +P+ CDN+SAI M++N V H 
Sbjct: 949  TSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYN-LSKVPLLCDNESAIRMAENPVEHS 1007

Query: 199  RTKHIDIRYHYICQKVHDKIISI*YVSTWNQLADIFTKALAKDRFLYLRNKLNM 38
            RTKHIDIR+H++        I + +VST NQLADIFTK L +  F  LR++LN+
Sbjct: 1008 RTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDEKTFCRLRSELNV 1061



 Score =  134 bits (337), Expect(3) = e-126
 Identities = 63/94 (67%), Positives = 78/94 (82%)
 Frame = -2

Query: 1365 RARIVAKGYKQVAGIDYEETFAPVARLEVVHTLITLAARLNIKLYQMDVKEAFLNGNLEE 1186
            +AR+VAKGY QVAG+D+EETFAPVARLE +H L+  AA  + +LYQMDVK AFLNG ++E
Sbjct: 620  KARLVAKGYAQVAGLDFEETFAPVARLESIHILLAYAAHHSFRLYQMDVKSAFLNGPIKE 679

Query: 1185 EVYMEQPEGFEDEDHPSYVCHLKKALNGLKKAPK 1084
            EVY+EQP GFEDE +P +VC L KAL GLK+AP+
Sbjct: 680  EVYVEQPPGFEDERYPDHVCKLSKALYGLKQAPR 713



 Score = 38.9 bits (89), Expect(3) = e-126
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -3

Query: 1499 MKDEIDQIKRTCTWLLVPRTFEMNVISCKWVFRN 1398
            M++E++  KR   W LVPR  + NV+  KWVFRN
Sbjct: 576  MQEELNNFKRNEVWTLVPRP-KQNVVGTKWVFRN 608


>gb|AEJ07931.1| Opie3 pol protein [Zea mays subsp. mexicana]
          Length = 1048

 Score =  332 bits (850), Expect(3) = e-126
 Identities = 161/354 (45%), Positives = 237/354 (66%)
 Frame = -1

Query: 1099 QESSKDWYGKLDSFLKSKGFIKGINDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHD 920
            +++ + WY  L  FL +  F  G  D T +    +  + + ++YVDDI+FG+T++  C +
Sbjct: 689  KQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEE 748

Query: 919  FSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMA 740
            FS  MT +FEMSM   L +FLG Q++Q+++G  +SQ  Y +++L++FGM   KP  TPM 
Sbjct: 749  FSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMG 808

Query: 739  ARLVLHKDENGKSVDKTQYRSMIGCLMYATASRSEITFAVSLVSRFQESPKDCHLIAVKR 560
                   ++ GKS+D+  YRSMIG L+Y  ASR +I  +V + +RFQ  PK+CHL+AVKR
Sbjct: 809  TDGHTDLNKGGKSIDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKR 868

Query: 559  IMRYLKGTLDLGIWYGRGKGINLIGFSDADWAGDHNDRKSTSGQCFMLGENLITWSSRKQ 380
            I+RYL  T   G+WY +G   +L+G+SD+D+AG   DRKSTSG C  LG +L++W+S+KQ
Sbjct: 869  ILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQ 928

Query: 379  ECVALSTVESEYIAASQCTTQAVWLKNWLANLGFHIIEPIPIYCDNQSAISMSKNSVMHK 200
              VALST E+EY+AA QC  Q +W++  L + G++ +  +P+ CDN+SAI M++N V H 
Sbjct: 929  TSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYN-LSKVPLLCDNESAIRMAENPVEHS 987

Query: 199  RTKHIDIRYHYICQKVHDKIISI*YVSTWNQLADIFTKALAKDRFLYLRNKLNM 38
            RTKHIDIR+H++        I + +VST NQLADIFTK L +  F  LR++LN+
Sbjct: 988  RTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDEKTFCRLRSELNV 1041



 Score =  131 bits (329), Expect(3) = e-126
 Identities = 62/94 (65%), Positives = 77/94 (81%)
 Frame = -2

Query: 1365 RARIVAKGYKQVAGIDYEETFAPVARLEVVHTLITLAARLNIKLYQMDVKEAFLNGNLEE 1186
            +AR+VAKGY QVAG+D+EETFAPVARLE +  L+  AA  + +LYQMDVK AFLNG ++E
Sbjct: 600  KARLVAKGYAQVAGLDFEETFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKE 659

Query: 1185 EVYMEQPEGFEDEDHPSYVCHLKKALNGLKKAPK 1084
            EVY+EQP GFEDE +P +VC L KAL GLK+AP+
Sbjct: 660  EVYVEQPPGFEDERYPDHVCKLSKALYGLKQAPR 693



 Score = 38.9 bits (89), Expect(3) = e-126
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -3

Query: 1499 MKDEIDQIKRTCTWLLVPRTFEMNVISCKWVFRN 1398
            M++E++  KR   W LVPR  + NV+  KWVFRN
Sbjct: 556  MQEELNNFKRNEVWTLVPRP-KQNVVGTKWVFRN 588


>gb|AAL66759.1|AF464738_10 putative pol protein [Zea mays]
          Length = 1657

 Score =  330 bits (846), Expect(3) = e-125
 Identities = 161/354 (45%), Positives = 236/354 (66%)
 Frame = -1

Query: 1099 QESSKDWYGKLDSFLKSKGFIKGINDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHD 920
            +++ + WY  L  FL +  F  G  D T +    +  + + ++YVDDI+FG+T++  C +
Sbjct: 1298 KQAPRAWYECLRDFLLANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEE 1357

Query: 919  FSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMA 740
            FS  MT +FEMSM   L +FLG Q++Q+++G  +SQ  Y +++L++FGM   KP  TPM 
Sbjct: 1358 FSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMG 1417

Query: 739  ARLVLHKDENGKSVDKTQYRSMIGCLMYATASRSEITFAVSLVSRFQESPKDCHLIAVKR 560
                   ++ GKSVD+  YRSMIG L+Y  ASR +I  +V + +RFQ  PK+CHL+AVKR
Sbjct: 1418 TDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKR 1477

Query: 559  IMRYLKGTLDLGIWYGRGKGINLIGFSDADWAGDHNDRKSTSGQCFMLGENLITWSSRKQ 380
            I+RYL  T   G+WY +G   +L+G+SD+D+AG   DRKSTSG C  LG +L++W+S+KQ
Sbjct: 1478 ILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQ 1537

Query: 379  ECVALSTVESEYIAASQCTTQAVWLKNWLANLGFHIIEPIPIYCDNQSAISMSKNSVMHK 200
              VALST E+EY+AA QC  Q +W++  L + G++ +  +P+ CDN+S I M++N V H 
Sbjct: 1538 TSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYN-LSKVPLLCDNESDIRMAENPVEHS 1596

Query: 199  RTKHIDIRYHYICQKVHDKIISI*YVSTWNQLADIFTKALAKDRFLYLRNKLNM 38
            RTKHIDIR+H++        I + +VST NQLADIFTK L +  F  LR++LN+
Sbjct: 1597 RTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDEKTFCRLRSELNV 1650



 Score =  131 bits (329), Expect(3) = e-125
 Identities = 62/94 (65%), Positives = 77/94 (81%)
 Frame = -2

Query: 1365 RARIVAKGYKQVAGIDYEETFAPVARLEVVHTLITLAARLNIKLYQMDVKEAFLNGNLEE 1186
            +AR+VAKGY QVAG+D+EETFAPVARLE +  L+  AA  + +LYQMDVK AFLNG ++E
Sbjct: 1209 KARLVAKGYAQVAGLDFEETFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKE 1268

Query: 1185 EVYMEQPEGFEDEDHPSYVCHLKKALNGLKKAPK 1084
            EVY+EQP GFEDE +P +VC L KAL GLK+AP+
Sbjct: 1269 EVYVEQPPGFEDERYPDHVCKLSKALYGLKQAPR 1302



 Score = 38.9 bits (89), Expect(3) = e-125
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -3

Query: 1499 MKDEIDQIKRTCTWLLVPRTFEMNVISCKWVFRN 1398
            M++E++  KR   W LVPR  + NV+  KWVFRN
Sbjct: 1165 MQEELNNFKRNEVWTLVPRP-KQNVVGTKWVFRN 1197


>gb|AEJ07944.1| Opie1 putative pol protein [Zea diploperennis]
          Length = 1065

 Score =  332 bits (850), Expect(3) = e-125
 Identities = 164/354 (46%), Positives = 236/354 (66%)
 Frame = -1

Query: 1099 QESSKDWYGKLDSFLKSKGFIKGINDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHD 920
            +++ + WY  L  FL +  F  G  D T +    +  +   ++YVDDI+FG+T++  C +
Sbjct: 706  KQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGDLFACQIYVDDIIFGSTNQKSCEE 765

Query: 919  FSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMA 740
            FS  MT +FEMSM   L +FLG Q+RQ+++G  +SQ  Y ++++++FGM   KP  TPM 
Sbjct: 766  FSRVMTQKFEMSMMGELSYFLGFQVRQLKDGTFISQTKYTQDLIKRFGMKDAKPAKTPMG 825

Query: 739  ARLVLHKDENGKSVDKTQYRSMIGCLMYATASRSEITFAVSLVSRFQESPKDCHLIAVKR 560
                   ++ GKSVD+  YRSMIG L+Y  ASR +I  +V + +RFQ  PK+CHL+AVKR
Sbjct: 826  TDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKR 885

Query: 559  IMRYLKGTLDLGIWYGRGKGINLIGFSDADWAGDHNDRKSTSGQCFMLGENLITWSSRKQ 380
            I+RYL  T   GIWY +G   +LIG+SD+D+AG   DRKSTSG C  LG +L++WSS+KQ
Sbjct: 886  ILRYLVATPCFGIWYPKGSTFDLIGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWSSKKQ 945

Query: 379  ECVALSTVESEYIAASQCTTQAVWLKNWLANLGFHIIEPIPIYCDNQSAISMSKNSVMHK 200
              VALST E+EY+AA QC  Q +W++  L + G++ +  +P+ CDN+SAI +++N V H 
Sbjct: 946  TSVALSTAEAEYVAAGQCCVQLLWMRQTLRDFGYN-LSKVPLLCDNESAIRIAENPVEHS 1004

Query: 199  RTKHIDIRYHYICQKVHDKIISI*YVSTWNQLADIFTKALAKDRFLYLRNKLNM 38
            RTKHIDIR+H++        I + +VST NQLADIFTK L +  F  LR++LN+
Sbjct: 1005 RTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDEKTFCRLRSELNV 1058



 Score =  129 bits (325), Expect(3) = e-125
 Identities = 61/94 (64%), Positives = 77/94 (81%)
 Frame = -2

Query: 1365 RARIVAKGYKQVAGIDYEETFAPVARLEVVHTLITLAARLNIKLYQMDVKEAFLNGNLEE 1186
            +AR+VAKGY QVAG+D+EETFAPVARLE +  L+  AA  + +L+QMDVK AFLNG ++E
Sbjct: 617  KARLVAKGYAQVAGLDFEETFAPVARLESIRILLAYAAHHSFRLFQMDVKSAFLNGPIKE 676

Query: 1185 EVYMEQPEGFEDEDHPSYVCHLKKALNGLKKAPK 1084
            EVY+EQP GFEDE +P +VC L KAL GLK+AP+
Sbjct: 677  EVYVEQPPGFEDERYPDHVCKLSKALYGLKQAPR 710



 Score = 38.9 bits (89), Expect(3) = e-125
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -3

Query: 1499 MKDEIDQIKRTCTWLLVPRTFEMNVISCKWVFRN 1398
            M++E++  KR   W LVPR  + NV+  KWVFRN
Sbjct: 573  MQEELNNFKRNEVWTLVPRP-KQNVVGTKWVFRN 605


>gb|AEJ07927.1| Opie2 pol protein [Zea mays subsp. mexicana]
          Length = 1048

 Score =  329 bits (843), Expect(3) = e-125
 Identities = 162/354 (45%), Positives = 235/354 (66%)
 Frame = -1

Query: 1099 QESSKDWYGKLDSFLKSKGFIKGINDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHD 920
            +++ + WY  L  FL    F  G  D T +    +  + + ++YVDDI+FG+T++  C +
Sbjct: 689  KQAPRAWYECLRDFLIVNAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEE 748

Query: 919  FSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMA 740
            FS  MT +FEMSM   L +FLG Q++Q+++G  +SQ  Y +++L++FGM   KP  TPM 
Sbjct: 749  FSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMG 808

Query: 739  ARLVLHKDENGKSVDKTQYRSMIGCLMYATASRSEITFAVSLVSRFQESPKDCHLIAVKR 560
                   ++ GKSVD+  YRSMIG L+Y  ASR +I  +V + +RFQ  PK+CHL+AVKR
Sbjct: 809  TDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKR 868

Query: 559  IMRYLKGTLDLGIWYGRGKGINLIGFSDADWAGDHNDRKSTSGQCFMLGENLITWSSRKQ 380
            I+RYL  T   G+WY +G   +L+G+SD+D+AG   DRKSTSG C  LG +L++W+S+KQ
Sbjct: 869  ILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQ 928

Query: 379  ECVALSTVESEYIAASQCTTQAVWLKNWLANLGFHIIEPIPIYCDNQSAISMSKNSVMHK 200
              VALST E+EY+AA QC  Q +W++  L + G++ +  +P+ CDN+SAI M++N V H 
Sbjct: 929  TSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYN-LSKVPLLCDNESAIRMAENPVEHS 987

Query: 199  RTKHIDIRYHYICQKVHDKIISI*YVSTWNQLADIFTKALAKDRFLYLRNKLNM 38
            RTKHIDIR H++        I + +VST NQLADIFTK L +  F  LR++LN+
Sbjct: 988  RTKHIDIRDHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDEKTFCRLRSELNV 1041



 Score =  131 bits (329), Expect(3) = e-125
 Identities = 62/94 (65%), Positives = 77/94 (81%)
 Frame = -2

Query: 1365 RARIVAKGYKQVAGIDYEETFAPVARLEVVHTLITLAARLNIKLYQMDVKEAFLNGNLEE 1186
            +AR+VAKGY QVAG+D+EETFAPVARLE +  L+  AA  + +LYQMDVK AFLNG ++E
Sbjct: 600  KARLVAKGYAQVAGLDFEETFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKE 659

Query: 1185 EVYMEQPEGFEDEDHPSYVCHLKKALNGLKKAPK 1084
            EVY+EQP GFEDE +P +VC L KAL GLK+AP+
Sbjct: 660  EVYVEQPPGFEDERYPDHVCKLSKALYGLKQAPR 693



 Score = 38.9 bits (89), Expect(3) = e-125
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -3

Query: 1499 MKDEIDQIKRTCTWLLVPRTFEMNVISCKWVFRN 1398
            M++E++  KR   W LVPR  + NV+  KWVFRN
Sbjct: 556  MQEELNNFKRNEVWTLVPRP-KQNVVGTKWVFRN 588


>gb|ABF67947.1| Opie2 pol protein [Zea mays]
          Length = 1048

 Score =  329 bits (843), Expect(3) = e-125
 Identities = 162/354 (45%), Positives = 235/354 (66%)
 Frame = -1

Query: 1099 QESSKDWYGKLDSFLKSKGFIKGINDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHD 920
            +++ + WY  L  FL    F  G  D T +    +  + + ++YVDDI+FG+T++  C +
Sbjct: 689  KQAPRAWYECLRDFLIVNAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEE 748

Query: 919  FSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMA 740
            FS  MT +FEMSM   L +FLG Q++Q+++G  +SQ  Y +++L++FGM   KP  TPM 
Sbjct: 749  FSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMG 808

Query: 739  ARLVLHKDENGKSVDKTQYRSMIGCLMYATASRSEITFAVSLVSRFQESPKDCHLIAVKR 560
                   ++ GKSVD+  YRSMIG L+Y  ASR +I  +V + +RFQ  PK+CHL+AVKR
Sbjct: 809  TDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKR 868

Query: 559  IMRYLKGTLDLGIWYGRGKGINLIGFSDADWAGDHNDRKSTSGQCFMLGENLITWSSRKQ 380
            I+RYL  T   G+WY +G   +L+G+SD+D+AG   DRKSTSG C  LG +L++W+S+KQ
Sbjct: 869  ILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQ 928

Query: 379  ECVALSTVESEYIAASQCTTQAVWLKNWLANLGFHIIEPIPIYCDNQSAISMSKNSVMHK 200
              VALST E+EY+AA QC  Q +W++  L + G++ +  +P+ CDN+SAI M++N V H 
Sbjct: 929  TSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYN-LSKVPLLCDNESAIRMAENPVEHS 987

Query: 199  RTKHIDIRYHYICQKVHDKIISI*YVSTWNQLADIFTKALAKDRFLYLRNKLNM 38
            RTKHIDIR H++        I + +VST NQLADIFTK L +  F  LR++LN+
Sbjct: 988  RTKHIDIRDHFLRDHQQKGDIKVFHVSTENQLADIFTKPLDEKTFCRLRSELNV 1041



 Score =  131 bits (329), Expect(3) = e-125
 Identities = 62/94 (65%), Positives = 77/94 (81%)
 Frame = -2

Query: 1365 RARIVAKGYKQVAGIDYEETFAPVARLEVVHTLITLAARLNIKLYQMDVKEAFLNGNLEE 1186
            +AR+VAKGY QVAG+D+EETFAPVARLE +  L+  AA  + +LYQMDVK AFLNG ++E
Sbjct: 600  KARLVAKGYAQVAGLDFEETFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKE 659

Query: 1185 EVYMEQPEGFEDEDHPSYVCHLKKALNGLKKAPK 1084
            EVY+EQP GFEDE +P +VC L KAL GLK+AP+
Sbjct: 660  EVYVEQPPGFEDERYPDHVCKLSKALYGLKQAPR 693



 Score = 38.9 bits (89), Expect(3) = e-125
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -3

Query: 1499 MKDEIDQIKRTCTWLLVPRTFEMNVISCKWVFRN 1398
            M++E++  KR   W LVPR  + NV+  KWVFRN
Sbjct: 556  MQEELNNFKRNEVWTLVPRP-KQNVVGTKWVFRN 588


>gb|AEJ07899.1| Opie3 putative pol protein [Zea mays subsp. mexicana]
          Length = 1048

 Score =  328 bits (840), Expect(3) = e-125
 Identities = 161/354 (45%), Positives = 235/354 (66%)
 Frame = -1

Query: 1099 QESSKDWYGKLDSFLKSKGFIKGINDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHD 920
            +++ + WY  L  FL    F  G  D T +    +  + + ++YVDDI+FG+T++  C +
Sbjct: 689  KQAPRAWYECLRDFLIVNAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEE 748

Query: 919  FSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMA 740
            FS  MT +FEMSM   L +FLG Q++Q+++G  +SQ  Y +++L++FGM   KP  TPM 
Sbjct: 749  FSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMG 808

Query: 739  ARLVLHKDENGKSVDKTQYRSMIGCLMYATASRSEITFAVSLVSRFQESPKDCHLIAVKR 560
                   ++ GKSVD+  YRSMIG L+Y  ASR +I  +V + +RFQ  PK+CHL+AVKR
Sbjct: 809  TDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKR 868

Query: 559  IMRYLKGTLDLGIWYGRGKGINLIGFSDADWAGDHNDRKSTSGQCFMLGENLITWSSRKQ 380
            I+RYL  T   G+WY +G   +L+G+SD+D+A    DRKSTSG C  LG +L++W+S+KQ
Sbjct: 869  ILRYLVATPCFGLWYPKGSTFDLVGYSDSDYARCKVDRKSTSGTCQFLGRSLVSWNSKKQ 928

Query: 379  ECVALSTVESEYIAASQCTTQAVWLKNWLANLGFHIIEPIPIYCDNQSAISMSKNSVMHK 200
              VALST E+EY+AA QC  Q +W++  L + G++ +  +P+ CDN+SAI M++N V H 
Sbjct: 929  TSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYN-LSKVPLLCDNESAIRMAENPVEHS 987

Query: 199  RTKHIDIRYHYICQKVHDKIISI*YVSTWNQLADIFTKALAKDRFLYLRNKLNM 38
            RTKHIDIR+H++        I + +VST NQLADIFTK L +  F  LR++LN+
Sbjct: 988  RTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDEKTFCRLRSELNV 1041



 Score =  131 bits (329), Expect(3) = e-125
 Identities = 62/94 (65%), Positives = 77/94 (81%)
 Frame = -2

Query: 1365 RARIVAKGYKQVAGIDYEETFAPVARLEVVHTLITLAARLNIKLYQMDVKEAFLNGNLEE 1186
            +AR+VAKGY QVAG+D+EETFAPVARLE +  L+  AA  + +LYQMDVK AFLNG ++E
Sbjct: 600  KARLVAKGYAQVAGLDFEETFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKE 659

Query: 1185 EVYMEQPEGFEDEDHPSYVCHLKKALNGLKKAPK 1084
            EVY+EQP GFEDE +P +VC L KAL GLK+AP+
Sbjct: 660  EVYVEQPPGFEDERYPDHVCKLSKALYGLKQAPR 693



 Score = 38.9 bits (89), Expect(3) = e-125
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -3

Query: 1499 MKDEIDQIKRTCTWLLVPRTFEMNVISCKWVFRN 1398
            M++E++  KR   W LVPR  + NV+  KWVFRN
Sbjct: 556  MQEELNNFKRNEVWTLVPRP-KQNVVGTKWVFRN 588


>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
          Length = 1892

 Score =  337 bits (865), Expect(3) = e-124
 Identities = 170/354 (48%), Positives = 232/354 (65%)
 Frame = -1

Query: 1099 QESSKDWYGKLDSFLKSKGFIKGINDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHD 920
            +++ + WY  L  FL + GF  G  D T +       + + ++YVDDI+FG+T+ES C +
Sbjct: 1532 KQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNESTCEE 1591

Query: 919  FSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMA 740
            FS  MT +FEMSM   LK+FLG Q++Q++ G  +SQ  Y +++L KFGM   KP  TPM 
Sbjct: 1592 FSRIMTQKFEMSMMGELKYFLGFQVKQLREGTFISQTKYTQDILAKFGMKDAKPIKTPMG 1651

Query: 739  ARLVLHKDENGKSVDKTQYRSMIGCLMYATASRSEITFAVSLVSRFQESPKDCHLIAVKR 560
                L  D  GKSVD+  YRSMIG L+Y  ASR +I  +V + +RFQ  PK+ HL AVKR
Sbjct: 1652 TNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKR 1711

Query: 559  IMRYLKGTLDLGIWYGRGKGINLIGFSDADWAGDHNDRKSTSGQCFMLGENLITWSSRKQ 380
            I+RYL  T   G+WY RG   +LIG+SDADWAG   +RKSTSG C  LG +L++W+S+KQ
Sbjct: 1712 ILRYLAYTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQ 1771

Query: 379  ECVALSTVESEYIAASQCTTQAVWLKNWLANLGFHIIEPIPIYCDNQSAISMSKNSVMHK 200
              VALST E+EYIAA  C  Q +W++  L + G+ + + +P+ CDN+SAI M+ N V H 
Sbjct: 1772 NSVALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYKLTK-VPLLCDNESAIKMADNPVEHS 1830

Query: 199  RTKHIDIRYHYICQKVHDKIISI*YVSTWNQLADIFTKALAKDRFLYLRNKLNM 38
            RTKHI IRYH++        I I Y++T +QLADIFTK L +  F  LR++LN+
Sbjct: 1831 RTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPLDEQSFTRLRHELNI 1884



 Score =  122 bits (305), Expect(3) = e-124
 Identities = 57/94 (60%), Positives = 74/94 (78%)
 Frame = -2

Query: 1365 RARIVAKGYKQVAGIDYEETFAPVARLEVVHTLITLAARLNIKLYQMDVKEAFLNGNLEE 1186
            +AR+VAKGY QV G+D++ET+APVARLE +  L+  A     KLYQMDVK AFLNG ++E
Sbjct: 1443 KARLVAKGYSQVEGLDFDETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKE 1502

Query: 1185 EVYMEQPEGFEDEDHPSYVCHLKKALNGLKKAPK 1084
            EVY+EQP GFED ++P++V  L KAL GLK+AP+
Sbjct: 1503 EVYVEQPPGFEDSEYPNHVYRLSKALYGLKQAPR 1536



 Score = 35.4 bits (80), Expect(3) = e-124
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -3

Query: 1499 MKDEIDQIKRTCTWLLVPRTFEMNVISCKWVFRN 1398
            M++E++   R   W LVPR    NV+  KWVFRN
Sbjct: 1399 MQEELNNFTRNEVWHLVPRP-NQNVVGTKWVFRN 1431


>gb|ABF67921.1| Ji1 putative pol protein [Zea mays]
          Length = 1063

 Score =  339 bits (869), Expect(3) = e-124
 Identities = 171/354 (48%), Positives = 232/354 (65%)
 Frame = -1

Query: 1099 QESSKDWYGKLDSFLKSKGFIKGINDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHD 920
            +++ + WY  L  FL + GF  G  D T +       + + ++YVDDI+FG+T+ES C +
Sbjct: 703  KQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNESTCEE 762

Query: 919  FSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMA 740
            FS  MT +FEMSM   LK+FLG Q++Q+Q G  +SQ  Y +++L KFGM   KP  TPM 
Sbjct: 763  FSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFISQTKYTQDILAKFGMKDAKPIKTPMG 822

Query: 739  ARLVLHKDENGKSVDKTQYRSMIGCLMYATASRSEITFAVSLVSRFQESPKDCHLIAVKR 560
                L  D  GKSVD+  YRSMIG L+Y  ASR +I  +V + +RFQ  PK+ HL AVKR
Sbjct: 823  TNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKR 882

Query: 559  IMRYLKGTLDLGIWYGRGKGINLIGFSDADWAGDHNDRKSTSGQCFMLGENLITWSSRKQ 380
            I+RYL  T   G+WY RG   +LIG+SDADWAG   +RKSTSG C  LG +L++W+S+KQ
Sbjct: 883  ILRYLAYTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQ 942

Query: 379  ECVALSTVESEYIAASQCTTQAVWLKNWLANLGFHIIEPIPIYCDNQSAISMSKNSVMHK 200
              VALST E+EYIAA  C  Q +W++  L + G+ + + +P+ CDN+SAI M+ N V H 
Sbjct: 943  NSVALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYKLTK-VPLLCDNESAIKMADNPVEHS 1001

Query: 199  RTKHIDIRYHYICQKVHDKIISI*YVSTWNQLADIFTKALAKDRFLYLRNKLNM 38
            RTKHI IRYH++        I I Y++T +QLADIFTK L +  F  LR++LN+
Sbjct: 1002 RTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPLDEQSFTRLRHELNI 1055



 Score =  120 bits (301), Expect(3) = e-124
 Identities = 57/94 (60%), Positives = 73/94 (77%)
 Frame = -2

Query: 1365 RARIVAKGYKQVAGIDYEETFAPVARLEVVHTLITLAARLNIKLYQMDVKEAFLNGNLEE 1186
            +AR+VAKGY QV G+D+ ET+APVARLE +  L+  A     KLYQMDVK AFLNG ++E
Sbjct: 614  KARLVAKGYSQVEGLDFGETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKE 673

Query: 1185 EVYMEQPEGFEDEDHPSYVCHLKKALNGLKKAPK 1084
            EVY+EQP GFED ++P++V  L KAL GLK+AP+
Sbjct: 674  EVYVEQPPGFEDSEYPNHVYRLSKALYGLKQAPR 707



 Score = 35.4 bits (80), Expect(3) = e-124
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -3

Query: 1499 MKDEIDQIKRTCTWLLVPRTFEMNVISCKWVFRN 1398
            M++E++   R   W LVPR    NV+  KWVFRN
Sbjct: 570  MQEELNNFTRNEVWHLVPRP-NQNVVGTKWVFRN 602


>gb|ABF67934.1| Opie3 pol polyprotein [Zea mays]
          Length = 1048

 Score =  326 bits (835), Expect(3) = e-124
 Identities = 159/354 (44%), Positives = 235/354 (66%)
 Frame = -1

Query: 1099 QESSKDWYGKLDSFLKSKGFIKGINDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHD 920
            +++ + WY  L  FL +  F  G  D T +    +  + + ++YVDDI+FG+T++  C +
Sbjct: 689  KQAPRAWYECLRDFLIANAFKVGKADPTLFTKTCDGNLFVCQIYVDDIIFGSTNQKSCEE 748

Query: 919  FSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMA 740
            FS  MT +F+MSM   L +FLG Q++Q+++G  +SQ  Y +++L++FGM   KP  TPM 
Sbjct: 749  FSRVMTRKFKMSMMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMG 808

Query: 739  ARLVLHKDENGKSVDKTQYRSMIGCLMYATASRSEITFAVSLVSRFQESPKDCHLIAVKR 560
                   ++ GKSVD+  YRSMIG L+Y  ASR +I  +V + +RFQ  PK+CHL+AVKR
Sbjct: 809  TDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKR 868

Query: 559  IMRYLKGTLDLGIWYGRGKGINLIGFSDADWAGDHNDRKSTSGQCFMLGENLITWSSRKQ 380
            I+RYL  T   G+WY +G   +L+G+SD+D+AG   DRKSTSG C  LG +L++W+S+KQ
Sbjct: 869  ILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQ 928

Query: 379  ECVALSTVESEYIAASQCTTQAVWLKNWLANLGFHIIEPIPIYCDNQSAISMSKNSVMHK 200
              VALST E+EY+ A QC  Q +W++  L +  ++ +  +P+ CDN+SAI M++N V H 
Sbjct: 929  TSVALSTAEAEYVVAGQCCAQLLWMRQTLRDFDYN-LSKVPLLCDNESAIRMAENPVEHS 987

Query: 199  RTKHIDIRYHYICQKVHDKIISI*YVSTWNQLADIFTKALAKDRFLYLRNKLNM 38
            RTKHIDIR+H++        I + +VST NQLADIFTK L +  F  LR++LN+
Sbjct: 988  RTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDEKTFCRLRSELNV 1041



 Score =  130 bits (326), Expect(3) = e-124
 Identities = 62/94 (65%), Positives = 77/94 (81%)
 Frame = -2

Query: 1365 RARIVAKGYKQVAGIDYEETFAPVARLEVVHTLITLAARLNIKLYQMDVKEAFLNGNLEE 1186
            +AR+VAKGY QVAG+D+EETFAPVARLE +  L+  AA  + +LYQMDVK AFLNG ++E
Sbjct: 600  KARLVAKGYAQVAGLDFEETFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKE 659

Query: 1185 EVYMEQPEGFEDEDHPSYVCHLKKALNGLKKAPK 1084
            EVY+EQP GFEDE +P +VC L KAL GLK+AP+
Sbjct: 660  EVYVEQPPGFEDERYPDHVCKLFKALYGLKQAPR 693



 Score = 38.9 bits (89), Expect(3) = e-124
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -3

Query: 1499 MKDEIDQIKRTCTWLLVPRTFEMNVISCKWVFRN 1398
            M++E++  KR   W LVPR  + NV+  KWVFRN
Sbjct: 556  MQEELNNFKRNEVWTLVPRP-KQNVVGTKWVFRN 588


>gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]
          Length = 1760

 Score =  338 bits (868), Expect(3) = e-123
 Identities = 170/354 (48%), Positives = 232/354 (65%)
 Frame = -1

Query: 1099 QESSKDWYGKLDSFLKSKGFIKGINDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHD 920
            +++ + WY  L  FL + GF  G  D T +       + + ++YVDDI+FG+T+ES C +
Sbjct: 1400 KQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNESTCEE 1459

Query: 919  FSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMA 740
            FS  MT +FEMSM   LK+FLG Q++Q+Q G  +SQ  Y +++L KFGM   KP  TPM 
Sbjct: 1460 FSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFISQTKYTQDILSKFGMKDAKPIKTPMG 1519

Query: 739  ARLVLHKDENGKSVDKTQYRSMIGCLMYATASRSEITFAVSLVSRFQESPKDCHLIAVKR 560
                L  D  GKSVD+  YRSMIG L+Y  ASR +I  +V + +RFQ  PK+ HL AVKR
Sbjct: 1520 TNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKR 1579

Query: 559  IMRYLKGTLDLGIWYGRGKGINLIGFSDADWAGDHNDRKSTSGQCFMLGENLITWSSRKQ 380
            I+RYL  T   G+WY RG   +L+G+SDADWAG   +RKSTSG C  LG +L++W+S+KQ
Sbjct: 1580 ILRYLAYTPKFGLWYPRGSTFDLLGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQ 1639

Query: 379  ECVALSTVESEYIAASQCTTQAVWLKNWLANLGFHIIEPIPIYCDNQSAISMSKNSVMHK 200
              VALST E+EYIAA  C  Q +W++  L + G+ + + +P+ CDN+SAI M+ N V H 
Sbjct: 1640 NSVALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYKLTK-VPLLCDNESAIKMADNPVEHS 1698

Query: 199  RTKHIDIRYHYICQKVHDKIISI*YVSTWNQLADIFTKALAKDRFLYLRNKLNM 38
            RTKHI IRYH++        I I Y++T +QLADIFTK L +  F  LR++LN+
Sbjct: 1699 RTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPLDEQTFTKLRHELNI 1752



 Score =  120 bits (300), Expect(3) = e-123
 Identities = 57/94 (60%), Positives = 73/94 (77%)
 Frame = -2

Query: 1365 RARIVAKGYKQVAGIDYEETFAPVARLEVVHTLITLAARLNIKLYQMDVKEAFLNGNLEE 1186
            +AR+VAKGY QV G+D+ ET+APVARLE +  L+  A     KLYQMDVK AFLNG ++E
Sbjct: 1311 KARLVAKGYSQVEGLDFGETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKE 1370

Query: 1185 EVYMEQPEGFEDEDHPSYVCHLKKALNGLKKAPK 1084
            EVY+EQP GFED ++P++V  L KAL GLK+AP+
Sbjct: 1371 EVYVEQPPGFEDSEYPNHVYKLSKALYGLKQAPR 1404



 Score = 35.4 bits (80), Expect(3) = e-123
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -3

Query: 1499 MKDEIDQIKRTCTWLLVPRTFEMNVISCKWVFRN 1398
            M++E++   R   W LVPR    NV+  KWVFRN
Sbjct: 1267 MQEELNNFTRNEVWHLVPRP-NQNVVGTKWVFRN 1299


>gb|AAP53706.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1419

 Score =  342 bits (876), Expect(3) = e-123
 Identities = 173/354 (48%), Positives = 236/354 (66%)
 Frame = -1

Query: 1099 QESSKDWYGKLDSFLKSKGFIKGINDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHD 920
            +++ + WY +L +FL +KGF  G  D T + L   +  L V++YVDDI+FG +  ++  D
Sbjct: 1060 KQAPRAWYDRLKNFLLAKGFTMGKVDKTLFVLKHGDNQLFVQIYVDDIIFGCSTHAVVVD 1119

Query: 919  FSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMA 740
            F+  M  EFEMSM   L +FLG+QI+Q   G  + Q  Y K++L++F M  CKP STP+ 
Sbjct: 1120 FAETMRREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFKMENCKPISTPIG 1179

Query: 739  ARLVLHKDENGKSVDKTQYRSMIGCLMYATASRSEITFAVSLVSRFQESPKDCHLIAVKR 560
            +  VL  DE+G++VD+ +YRSMIG L+Y TASR +I FAV L +RFQ SP+  H  AVKR
Sbjct: 1180 STAVLDPDEDGEAVDQKEYRSMIGSLLYLTASRPDIQFAVCLCARFQASPRASHRQAVKR 1239

Query: 559  IMRYLKGTLDLGIWYGRGKGINLIGFSDADWAGDHNDRKSTSGQCFMLGENLITWSSRKQ 380
            IMRYL  TL+ GIWY     I L G+SDAD+ G   DRKSTSG C  LG +LI WSSRKQ
Sbjct: 1240 IMRYLNHTLEFGIWYSTSSSICLSGYSDADFGGCRIDRKSTSGTCHFLGTSLIAWSSRKQ 1299

Query: 379  ECVALSTVESEYIAASQCTTQAVWLKNWLANLGFHIIEPIPIYCDNQSAISMSKNSVMHK 200
              VA ST ESEY+AA+ C +Q +WL + L + G    E +P++CDN SAI+++KN V H 
Sbjct: 1300 SSVAQSTAESEYVAAASCCSQILWLLSTLKDYGI-TFEKVPLFCDNTSAINIAKNPVQHS 1358

Query: 199  RTKHIDIRYHYICQKVHDKIISI*YVSTWNQLADIFTKALAKDRFLYLRNKLNM 38
            RTKHIDIR+H++   V    + + ++ T  Q+ADIFTK L  +RF +LR +L +
Sbjct: 1359 RTKHIDIRFHFLRDHVEKGDVELQFLDTKLQIADIFTKPLDSNRFAFLRGELGV 1412



 Score =  118 bits (296), Expect(3) = e-123
 Identities = 55/94 (58%), Positives = 74/94 (78%)
 Frame = -2

Query: 1365 RARIVAKGYKQVAGIDYEETFAPVARLEVVHTLITLAARLNIKLYQMDVKEAFLNGNLEE 1186
            +AR+VA+G+ QV G+D++ETFAPVAR+E +  L+  AA    KLYQMDVK AFLNG ++E
Sbjct: 971  KARLVAQGFTQVEGLDFDETFAPVARIEAIRLLLAFAASKGFKLYQMDVKSAFLNGFIQE 1030

Query: 1185 EVYMEQPEGFEDEDHPSYVCHLKKALNGLKKAPK 1084
            EVY++QP GFE+ D P++V  L KAL GLK+AP+
Sbjct: 1031 EVYVKQPPGFENPDFPNHVFKLSKALYGLKQAPR 1064



 Score = 32.7 bits (73), Expect(3) = e-123
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 1499 MKDEIDQIKRTCTWLLVPRTFEMNVISCKWVFRN 1398
            M +E++  +R   W LV      NVI  KWVF+N
Sbjct: 926  MHEELENFERNKVWTLVEPPSGHNVIGTKWVFKN 959


>gb|AAD20307.1| copia-type pol polyprotein [Zea mays]
          Length = 1063

 Score =  335 bits (860), Expect(3) = e-123
 Identities = 169/354 (47%), Positives = 231/354 (65%)
 Frame = -1

Query: 1099 QESSKDWYGKLDSFLKSKGFIKGINDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHD 920
            +++ + WY  L  FL + GF  G  D T +       + + ++YVDDI+FG+T++S C +
Sbjct: 703  KQAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNKSTCEE 762

Query: 919  FSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMA 740
            FS  MT +FEMSM   LK+FLG Q++Q+Q G  + Q  Y +++L KFGM   KP  TPM 
Sbjct: 763  FSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFICQTKYTQDILTKFGMKDAKPIKTPMG 822

Query: 739  ARLVLHKDENGKSVDKTQYRSMIGCLMYATASRSEITFAVSLVSRFQESPKDCHLIAVKR 560
                L  D  GKSVD+  YRSMIG L+Y  ASR +I  +V + +RFQ  PK+ HL AVKR
Sbjct: 823  TNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKR 882

Query: 559  IMRYLKGTLDLGIWYGRGKGINLIGFSDADWAGDHNDRKSTSGQCFMLGENLITWSSRKQ 380
            I+RYL  T   G+WY RG   +LIG+SDADWAG   +RKSTSG C  LG +L++W+S+KQ
Sbjct: 883  ILRYLAYTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQ 942

Query: 379  ECVALSTVESEYIAASQCTTQAVWLKNWLANLGFHIIEPIPIYCDNQSAISMSKNSVMHK 200
              VALST E+EYIAA  C  Q +W++  L + G+ + + +P+ CDN+SAI M+ N V H 
Sbjct: 943  NSVALSTAEAEYIAAGHCCAQLLWMRQTLLDYGYKLTK-VPLLCDNESAIKMADNPVEHS 1001

Query: 199  RTKHIDIRYHYICQKVHDKIISI*YVSTWNQLADIFTKALAKDRFLYLRNKLNM 38
            RTKHI IRYH++        I I Y++T +QLADIFTK L +  F  LR++LN+
Sbjct: 1002 RTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPLDEQSFTRLRHELNI 1055



 Score =  120 bits (301), Expect(3) = e-123
 Identities = 57/94 (60%), Positives = 73/94 (77%)
 Frame = -2

Query: 1365 RARIVAKGYKQVAGIDYEETFAPVARLEVVHTLITLAARLNIKLYQMDVKEAFLNGNLEE 1186
            +AR+VAKGY QV G+D+ ET+APVARLE +  L+  A     KLYQMDVK AFLNG ++E
Sbjct: 614  KARLVAKGYSQVEGLDFGETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKE 673

Query: 1185 EVYMEQPEGFEDEDHPSYVCHLKKALNGLKKAPK 1084
            EVY+EQP GFED ++P++V  L KAL GLK+AP+
Sbjct: 674  EVYVEQPPGFEDSEYPNHVYRLSKALYGLKQAPR 707



 Score = 35.4 bits (80), Expect(3) = e-123
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -3

Query: 1499 MKDEIDQIKRTCTWLLVPRTFEMNVISCKWVFRN 1398
            M++E++   R   W LVPR    NV+  KWVFRN
Sbjct: 570  MQEELNNFTRNEVWHLVPRP-NQNVVGTKWVFRN 602


>gb|AAM94552.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1584

 Score =  338 bits (866), Expect(3) = e-122
 Identities = 168/354 (47%), Positives = 238/354 (67%)
 Frame = -1

Query: 1099 QESSKDWYGKLDSFLKSKGFIKGINDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHD 920
            +++ + WY +L  FL SK F  G  + T +  I  +   + ++YVDDI+FG+T+E  C +
Sbjct: 1225 KQAPRAWYERLRYFLLSKDFKIGKVNTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKE 1284

Query: 919  FSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMA 740
            F + M+ EFEMSM   L  FLG+QI+Q+++G  +SQ  Y+K++L++FG+   KP  TPMA
Sbjct: 1285 FGDMMSREFEMSMIGELNFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMA 1344

Query: 739  ARLVLHKDENGKSVDKTQYRSMIGCLMYATASRSEITFAVSLVSRFQESPKDCHLIAVKR 560
                L  D+ GK VD   YRSMIG L+Y TASR +I F+V + +RFQ +PK+CHL+AVKR
Sbjct: 1345 TNGHLDLDKGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMCARFQAAPKECHLVAVKR 1404

Query: 559  IMRYLKGTLDLGIWYGRGKGINLIGFSDADWAGDHNDRKSTSGQCFMLGENLITWSSRKQ 380
            I+RYLK +  +G+WY +G    L+G+SD+D+A    DRKSTSG C MLG +L++WSS+KQ
Sbjct: 1405 ILRYLKHSSTIGLWYPKGAKFKLVGYSDSDYASCKVDRKSTSGSCQMLGRSLVSWSSKKQ 1464

Query: 379  ECVALSTVESEYIAASQCTTQAVWLKNWLANLGFHIIEPIPIYCDNQSAISMSKNSVMHK 200
              VALST E+EY++A  C  Q +W+K  L + G    +  P+ CDN  AI ++ N V H 
Sbjct: 1465 NSVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFTK-TPLLCDNDRAIKIANNPVQHS 1523

Query: 199  RTKHIDIRYHYICQKVHDKIISI*YVSTWNQLADIFTKALAKDRFLYLRNKLNM 38
            RTKHIDIR+H++   V    I I ++ T +QLADIFTK L + RF  LRN+LN+
Sbjct: 1524 RTKHIDIRHHFLRDHVTKCDIVISHIRTEDQLADIFTKPLNETRFCKLRNELNV 1577



 Score =  114 bits (284), Expect(3) = e-122
 Identities = 54/94 (57%), Positives = 73/94 (77%)
 Frame = -2

Query: 1365 RARIVAKGYKQVAGIDYEETFAPVARLEVVHTLITLAARLNIKLYQMDVKEAFLNGNLEE 1186
            +AR+VA+G+ QV G+D+ ETFAPVARLE +  L+  A+  +IKL+QMDVK AFLNG + E
Sbjct: 1136 KARLVAQGFTQVEGLDFGETFAPVARLEAIRILLAFASCFDIKLFQMDVKSAFLNGEIAE 1195

Query: 1185 EVYMEQPEGFEDEDHPSYVCHLKKALNGLKKAPK 1084
             V++EQP GFED  +P++V  L KAL GLK+AP+
Sbjct: 1196 LVFVEQPPGFEDPKNPNHVYKLSKALYGLKQAPR 1229



 Score = 37.4 bits (85), Expect(3) = e-122
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 1499 MKDEIDQIKRTCTWLLVPRTFEMNVISCKWVFRN 1398
            M +E++   R   W+LV R  + NVI  KW+FRN
Sbjct: 1091 MHEELNNFARNKVWILVERPRDHNVIGTKWIFRN 1124


>gb|ABG66113.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2112

 Score =  337 bits (865), Expect(3) = e-122
 Identities = 168/353 (47%), Positives = 237/353 (67%)
 Frame = -1

Query: 1099 QESSKDWYGKLDSFLKSKGFIKGINDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHD 920
            +++ + WY +L  FL SK F  G  + T +  I  +   + ++YVDDI+FG+T+E  C +
Sbjct: 1225 KQAPRAWYERLRYFLLSKDFKIGKVNTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKE 1284

Query: 919  FSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMA 740
            F + M+ EFEMSM   L  FLG+QI+Q+++G  +SQ  Y+K++L++FG+   KP  TPMA
Sbjct: 1285 FGDMMSREFEMSMIGELNFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMA 1344

Query: 739  ARLVLHKDENGKSVDKTQYRSMIGCLMYATASRSEITFAVSLVSRFQESPKDCHLIAVKR 560
                L  D+ GK VD   YRSMIG L+Y TASR +I F+V + +RFQ +PK+CHL+AVKR
Sbjct: 1345 TNGHLDLDKGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMCARFQAAPKECHLVAVKR 1404

Query: 559  IMRYLKGTLDLGIWYGRGKGINLIGFSDADWAGDHNDRKSTSGQCFMLGENLITWSSRKQ 380
            I+RYLK +  +G+WY +G    L+G+SD+D+A    DRKSTSG C MLG +L++WSS+KQ
Sbjct: 1405 ILRYLKHSSTIGLWYPKGAKFKLVGYSDSDYASCKVDRKSTSGSCQMLGRSLVSWSSKKQ 1464

Query: 379  ECVALSTVESEYIAASQCTTQAVWLKNWLANLGFHIIEPIPIYCDNQSAISMSKNSVMHK 200
              VALST E+EY++A  C  Q +W+K  L + G    +  P+ CDN  AI ++ N V H 
Sbjct: 1465 NSVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFTK-TPLLCDNDRAIKIANNPVQHS 1523

Query: 199  RTKHIDIRYHYICQKVHDKIISI*YVSTWNQLADIFTKALAKDRFLYLRNKLN 41
            RTKHIDIR+H++   V    I I ++ T +QLADIFTK L + RF  LRN+LN
Sbjct: 1524 RTKHIDIRHHFLRDHVTKCDIVISHIRTEDQLADIFTKPLNETRFCKLRNELN 1576



 Score =  114 bits (284), Expect(3) = e-122
 Identities = 54/94 (57%), Positives = 73/94 (77%)
 Frame = -2

Query: 1365 RARIVAKGYKQVAGIDYEETFAPVARLEVVHTLITLAARLNIKLYQMDVKEAFLNGNLEE 1186
            +AR+VA+G+ QV G+D+ ETFAPVARLE +  L+  A+  +IKL+QMDVK AFLNG + E
Sbjct: 1136 KARLVAQGFTQVEGLDFGETFAPVARLEAIRILLAFASCFDIKLFQMDVKSAFLNGEIAE 1195

Query: 1185 EVYMEQPEGFEDEDHPSYVCHLKKALNGLKKAPK 1084
             V++EQP GFED  +P++V  L KAL GLK+AP+
Sbjct: 1196 LVFVEQPPGFEDPKNPNHVYKLSKALYGLKQAPR 1229



 Score = 37.4 bits (85), Expect(3) = e-122
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 1499 MKDEIDQIKRTCTWLLVPRTFEMNVISCKWVFRN 1398
            M +E++   R   W+LV R  + NVI  KW+FRN
Sbjct: 1091 MHEELNNFARNKVWILVERPRDHNVIGTKWIFRN 1124


>emb|CAH66897.1| OSIGBa0099L20.12 [Oryza sativa Indica Group]
          Length = 711

 Score =  343 bits (880), Expect(3) = e-122
 Identities = 170/354 (48%), Positives = 240/354 (67%)
 Frame = -1

Query: 1099 QESSKDWYGKLDSFLKSKGFIKGINDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHD 920
            +++ + WY +L  FL SK F  G  D T +  I  +   + ++YVDDI+FG+T+E  C +
Sbjct: 352  KQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKE 411

Query: 919  FSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMA 740
            F + M  EFEMSM + L  FLG+QI+Q+++G+ +SQ  Y+K++L++FG+   KP  TPMA
Sbjct: 412  FDDMMFREFEMSMIEELSFFLGLQIKQLKDGMFVSQTKYIKDLLKRFGLEDAKPIKTPMA 471

Query: 739  ARLVLHKDENGKSVDKTQYRSMIGCLMYATASRSEITFAVSLVSRFQESPKDCHLIAVKR 560
                L  DE GK VD   YRSMIG L+Y T SR +I F+V + +RFQ +PK+CHL+AVKR
Sbjct: 472  TNGHLDLDEGGKLVDLKLYRSMIGSLLYFTVSRPDIMFSVCMCARFQAAPKECHLVAVKR 531

Query: 559  IMRYLKGTLDLGIWYGRGKGINLIGFSDADWAGDHNDRKSTSGQCFMLGENLITWSSRKQ 380
            I+RYLK +  +G+WY +G    L+G+SD+D+AG   DRKSTSG C MLG +L++WSS+KQ
Sbjct: 532  ILRYLKHSSTIGLWYPKGAKFKLVGYSDSDYAGCKVDRKSTSGSCQMLGRSLVSWSSKKQ 591

Query: 379  ECVALSTVESEYIAASQCTTQAVWLKNWLANLGFHIIEPIPIYCDNQSAISMSKNSVMHK 200
              VALST E+EY++A  C  Q +W+K  L + G    + + + CDN SAI ++ N V H 
Sbjct: 592  NSVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFTKTL-LLCDNDSAIKIANNPVQHS 650

Query: 199  RTKHIDIRYHYICQKVHDKIISI*YVSTWNQLADIFTKALAKDRFLYLRNKLNM 38
            RTKHIDIR+H++   V    I I ++ T +QLADIFTK L + RF  LRN+LN+
Sbjct: 651  RTKHIDIRHHFLRDHVAKCDIVISHIRTEDQLADIFTKPLDETRFCKLRNELNV 704



 Score =  108 bits (271), Expect(3) = e-122
 Identities = 51/94 (54%), Positives = 71/94 (75%)
 Frame = -2

Query: 1365 RARIVAKGYKQVAGIDYEETFAPVARLEVVHTLITLAARLNIKLYQMDVKEAFLNGNLEE 1186
            +AR+VA+G+ QV G+D+ ETFAP+ RLE +  L+  A+  +IKL+QMDVK AFLNG + E
Sbjct: 263  KARLVAQGFTQVEGLDFGETFAPIVRLEAIRILLAFASCFDIKLFQMDVKSAFLNGEIAE 322

Query: 1185 EVYMEQPEGFEDEDHPSYVCHLKKALNGLKKAPK 1084
             V++EQP GFED  + ++V  L KAL GLK+AP+
Sbjct: 323  LVFVEQPPGFEDPKNSNHVYKLSKALYGLKQAPR 356



 Score = 36.2 bits (82), Expect(3) = e-122
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 1499 MKDEIDQIKRTCTWLLVPRTFEMNVISCKWVFRN 1398
            M +E++   R   W LV R  + NVI  KW+FRN
Sbjct: 218  MHEELNNFARNKVWTLVERPRDHNVIGTKWIFRN 251


>gb|AAO37468.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1128

 Score =  343 bits (881), Expect(3) = e-121
 Identities = 171/355 (48%), Positives = 239/355 (67%), Gaps = 1/355 (0%)
 Frame = -1

Query: 1099 QESSKDWYGKLDSFLKSKGFIKGINDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHD 920
            +++ + WY +L  FL SK F  G  D T +  I  +   + ++YVDDI+FG+T+E  C +
Sbjct: 767  KQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKE 826

Query: 919  FSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMA 740
            F + M+ EFEMSM + L  FLG+QI+Q+++G  +SQ  Y+K++L++FG+   KP  TPMA
Sbjct: 827  FGDMMSREFEMSMIEELSFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMA 886

Query: 739  ARLVLHKDENGKSVDKTQYRSMIGCLMYATASRSEITFAVSLVSRFQESPKDCHLIAVKR 560
                L  DE GK VD   YRSMIG L+Y TASR +I F+V + +RFQ +PK+CHL+AVKR
Sbjct: 887  TNWHLDLDEGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMYARFQAAPKECHLVAVKR 946

Query: 559  IMRYLKGTLDLGIWYGRGKGINLIGFSDADWAGDHNDRKSTSGQCFMLGENLITWSSRKQ 380
            I+RYLK +  + +WY +G    L+G+SD+D+AG   DRKSTSG C MLG +L++WSS+KQ
Sbjct: 947  ILRYLKHSSTISLWYPKGAKFKLVGYSDSDYAGYKVDRKSTSGSCQMLGRSLVSWSSKKQ 1006

Query: 379  ECVALSTVESEYIAASQCTTQAVWLKNWLANLGFHIIE-PIPIYCDNQSAISMSKNSVMH 203
              VALST E+EYI+A  C  Q +W+K  L + G    E   P+ C+N S I ++ N V H
Sbjct: 1007 NSVALSTAEAEYISAGSCCAQLLWMKQILLDYGISFTETQTPLLCNNDSTIKIANNPVQH 1066

Query: 202  KRTKHIDIRYHYICQKVHDKIISI*YVSTWNQLADIFTKALAKDRFLYLRNKLNM 38
             RTKHIDIR+H++   V    I I ++ T +QLADIFTK L + RF  LRN+LN+
Sbjct: 1067 FRTKHIDIRHHFLTDHVAKCDIVISHIRTEDQLADIFTKPLDETRFCKLRNELNV 1121



 Score =  108 bits (271), Expect(3) = e-121
 Identities = 51/94 (54%), Positives = 71/94 (75%)
 Frame = -2

Query: 1365 RARIVAKGYKQVAGIDYEETFAPVARLEVVHTLITLAARLNIKLYQMDVKEAFLNGNLEE 1186
            +AR+VA+G+ QV  +D+ ETF PVARLE +  L+  A+  +IKL+QMDVK AFLNG + E
Sbjct: 678  KARLVAQGFTQVEDLDFGETFGPVARLEAIRILLAFASCFDIKLFQMDVKSAFLNGEIAE 737

Query: 1185 EVYMEQPEGFEDEDHPSYVCHLKKALNGLKKAPK 1084
             V++EQP GF+D  +P++V  L KAL GLK+AP+
Sbjct: 738  LVFVEQPPGFDDPKYPNHVYKLSKALYGLKQAPR 771



 Score = 35.0 bits (79), Expect(3) = e-121
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 1493 DEIDQIKRTCTWLLVPRTFEMNVISCKWVFRN 1398
            +E++   R   W LV R  + NVI  KWVFRN
Sbjct: 635  EELNNFARNKVWTLVERPRDHNVIGTKWVFRN 666


>gb|ABF96984.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1115

 Score =  343 bits (881), Expect(3) = e-121
 Identities = 171/355 (48%), Positives = 239/355 (67%), Gaps = 1/355 (0%)
 Frame = -1

Query: 1099 QESSKDWYGKLDSFLKSKGFIKGINDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHD 920
            +++ + WY +L  FL SK F  G  D T +  I  +   + ++YVDDI+FG+T+E  C +
Sbjct: 754  KQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKE 813

Query: 919  FSNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMA 740
            F + M+ EFEMSM + L  FLG+QI+Q+++G  +SQ  Y+K++L++FG+   KP  TPMA
Sbjct: 814  FGDMMSREFEMSMIEELSFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMA 873

Query: 739  ARLVLHKDENGKSVDKTQYRSMIGCLMYATASRSEITFAVSLVSRFQESPKDCHLIAVKR 560
                L  DE GK VD   YRSMIG L+Y TASR +I F+V + +RFQ +PK+CHL+AVKR
Sbjct: 874  TNWHLDLDEGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMYARFQAAPKECHLVAVKR 933

Query: 559  IMRYLKGTLDLGIWYGRGKGINLIGFSDADWAGDHNDRKSTSGQCFMLGENLITWSSRKQ 380
            I+RYLK +  + +WY +G    L+G+SD+D+AG   DRKSTSG C MLG +L++WSS+KQ
Sbjct: 934  ILRYLKHSSTISLWYPKGAKFKLVGYSDSDYAGYKVDRKSTSGSCQMLGRSLVSWSSKKQ 993

Query: 379  ECVALSTVESEYIAASQCTTQAVWLKNWLANLGFHIIE-PIPIYCDNQSAISMSKNSVMH 203
              VALST E+EYI+A  C  Q +W+K  L + G    E   P+ C+N S I ++ N V H
Sbjct: 994  NSVALSTAEAEYISAGSCCAQLLWMKQILLDYGISFTETQTPLLCNNDSTIKIANNPVQH 1053

Query: 202  KRTKHIDIRYHYICQKVHDKIISI*YVSTWNQLADIFTKALAKDRFLYLRNKLNM 38
             RTKHIDIR+H++   V    I I ++ T +QLADIFTK L + RF  LRN+LN+
Sbjct: 1054 FRTKHIDIRHHFLTDHVAKCDIVISHIRTEDQLADIFTKPLDETRFCKLRNELNV 1108



 Score =  108 bits (271), Expect(3) = e-121
 Identities = 51/94 (54%), Positives = 71/94 (75%)
 Frame = -2

Query: 1365 RARIVAKGYKQVAGIDYEETFAPVARLEVVHTLITLAARLNIKLYQMDVKEAFLNGNLEE 1186
            +AR+VA+G+ QV  +D+ ETF PVARLE +  L+  A+  +IKL+QMDVK AFLNG + E
Sbjct: 665  KARLVAQGFTQVEDLDFGETFGPVARLEAIRILLAFASCFDIKLFQMDVKSAFLNGEIAE 724

Query: 1185 EVYMEQPEGFEDEDHPSYVCHLKKALNGLKKAPK 1084
             V++EQP GF+D  +P++V  L KAL GLK+AP+
Sbjct: 725  LVFVEQPPGFDDPKYPNHVYKLSKALYGLKQAPR 758



 Score = 35.0 bits (79), Expect(3) = e-121
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 1493 DEIDQIKRTCTWLLVPRTFEMNVISCKWVFRN 1398
            +E++   R   W LV R  + NVI  KWVFRN
Sbjct: 622  EELNNFARNKVWTLVERPRDHNVIGTKWVFRN 653


>gb|AAL75483.1|AF466202_9 putative pol protein [Zea mays]
          Length = 1553

 Score =  334 bits (857), Expect(3) = e-121
 Identities = 163/353 (46%), Positives = 236/353 (66%)
 Frame = -1

Query: 1096 ESSKDWYGKLDSFLKSKGFIKGINDDTQYYLIKNEQILIVEVYVDDILFGATDESLCHDF 917
            ++ + WY  L +FL +  F  G  D T +    N  + + ++YVDDI+FG+T++  C +F
Sbjct: 1195 QAPRAWYECLRNFLIANAFKVGKADPTLFTKTCNGDLFVCQIYVDDIIFGSTNQKSCEEF 1254

Query: 916  SNWMTSEFEMSMFQILKHFLGMQIRQIQNGIHLSQGTYLKNMLQKFGMLQCKPHSTPMAA 737
            S  MT +FEM M   L +FLG Q++Q+++G  +SQ  Y ++++++FGM   KP  TPM  
Sbjct: 1255 SRVMTQKFEMPMMGELSYFLGFQVKQLKDGTFISQTKYTQDLIKRFGMKDAKPAKTPMGT 1314

Query: 736  RLVLHKDENGKSVDKTQYRSMIGCLMYATASRSEITFAVSLVSRFQESPKDCHLIAVKRI 557
               +  ++ GKSVD+  YRSMIG L+Y  ASR +I  +V + +RFQ  P++CHL+AVKRI
Sbjct: 1315 DGHIDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPRECHLVAVKRI 1374

Query: 556  MRYLKGTLDLGIWYGRGKGINLIGFSDADWAGDHNDRKSTSGQCFMLGENLITWSSRKQE 377
            +RYL  T   GIWY +G   +LIG+SD+D+AG   DRKSTSG C  LG +L++WSS+KQ 
Sbjct: 1375 LRYLVATPCFGIWYPKGSTFDLIGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWSSKKQT 1434

Query: 376  CVALSTVESEYIAASQCTTQAVWLKNWLANLGFHIIEPIPIYCDNQSAISMSKNSVMHKR 197
             VALST E+EY+AA QC  Q +W++  L + G++ +  +P+ CDN+SAI M+ N V H R
Sbjct: 1435 SVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYN-LNKVPLLCDNESAIRMADNPVEHSR 1493

Query: 196  TKHIDIRYHYICQKVHDKIISI*YVSTWNQLADIFTKALAKDRFLYLRNKLNM 38
            TKHIDIR+H++        I + YVST NQLADIFTK L +  F  LR+++N+
Sbjct: 1494 TKHIDIRHHFLRDHQQKGDIEVFYVSTENQLADIFTKPLDESTFCRLRSEINV 1546



 Score =  122 bits (306), Expect(3) = e-121
 Identities = 58/94 (61%), Positives = 74/94 (78%)
 Frame = -2

Query: 1365 RARIVAKGYKQVAGIDYEETFAPVARLEVVHTLITLAARLNIKLYQMDVKEAFLNGNLEE 1186
            +AR+VAKG  QVAG+D+EETFAPVARLE +  L+   A  + +L+QMDVK AFLNG ++E
Sbjct: 1105 KARLVAKGCAQVAGLDFEETFAPVARLESIRILLAYVAHHSFRLFQMDVKSAFLNGPIKE 1164

Query: 1185 EVYMEQPEGFEDEDHPSYVCHLKKALNGLKKAPK 1084
            EVY+EQP GFEDE +P +VC L KAL GL +AP+
Sbjct: 1165 EVYVEQPPGFEDERYPDHVCKLSKALYGLMQAPR 1198



 Score = 30.4 bits (67), Expect(3) = e-121
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -3

Query: 1460 WLLVPRTFEMNVISCKWVFRN 1398
            W LVPR  + NV+  KWVFRN
Sbjct: 1074 WTLVPRP-KQNVVGTKWVFRN 1093