BLASTX nr result

ID: Ephedra26_contig00005520 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00005520
         (1353 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006843179.1| hypothetical protein AMTR_s00146p00072100 [A...   424   e-116
gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japo...   401   e-109
ref|NP_001062265.1| Os08g0520100 [Oryza sativa Japonica Group] g...   401   e-109
ref|XP_003572398.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   400   e-109
ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   399   e-108
ref|XP_004974856.1| PREDICTED: RNA pseudouridine synthase 3, mit...   397   e-108
dbj|BAD09700.1| putative ribosomal large subunit pseudouridine s...   396   e-107
gb|EOY26277.1| Pseudouridine synthase family protein [Theobroma ...   395   e-107
gb|AFW61502.1| hypothetical protein ZEAMMB73_778378 [Zea mays]        395   e-107
ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   395   e-107
ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   395   e-107
ref|XP_004300876.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   394   e-107
ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mit...   392   e-106
gb|AFW61501.1| hypothetical protein ZEAMMB73_778378 [Zea mays]        392   e-106
dbj|BAJ88492.1| predicted protein [Hordeum vulgare subsp. vulgare]    392   e-106
ref|XP_006659607.1| PREDICTED: RNA pseudouridine synthase 3, mit...   391   e-106
gb|EMT10490.1| RNA pseudourine synthase 3, mitochondrial [Aegilo...   390   e-106
emb|CBI18448.3| unnamed protein product [Vitis vinifera]              390   e-106
ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   389   e-105
ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Popu...   388   e-105

>ref|XP_006843179.1| hypothetical protein AMTR_s00146p00072100 [Amborella trichopoda]
            gi|548845403|gb|ERN04854.1| hypothetical protein
            AMTR_s00146p00072100 [Amborella trichopoda]
          Length = 462

 Score =  424 bits (1089), Expect = e-116
 Identities = 210/347 (60%), Positives = 268/347 (77%), Gaps = 6/347 (1%)
 Frame = -1

Query: 1341 KPVGGRDVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAI 1162
            K VG  +V+ +G  +Y+PVSI   KI  KRY+ +P GT+HPNADEI Y+R LV+YKD AI
Sbjct: 118  KKVGANEVMKNGLQIYVPVSICESKI-SKRYDTIPSGTLHPNADEIDYLRRLVMYKDSAI 176

Query: 1161 IVLNRPTHLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESI 982
            IVLN+P  LP + +L +HNSMDALAAA LS+ Y+EGPK+VHR+DRESSGI++MGRT ES 
Sbjct: 177  IVLNKPPKLPVKGNLPVHNSMDALAAAALSFGYDEGPKLVHRLDRESSGIILMGRTDESF 236

Query: 981  QCLHDLFREKNIMPSENKNSVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPKE 802
            + L  LF   +   +      R +   ++YWALVIG PKEK+G+ISAPLSKV L++   E
Sbjct: 237  KRLRSLFNYGSNGLTSESTGDRCKGAIRKYWALVIGSPKEKQGLISAPLSKVLLNDGKTE 296

Query: 801  RVIIS-RSELDGPQEAVTQYRVLGPTINGCSWLELCPLTGRKHQLRVHCAEALGTPIVGD 625
            R+I++  S LDG QEA+T+YRVLGPTINGCSW+ELCPLTGRKHQLRVHCAEALGTPIVGD
Sbjct: 297  RLILAYNSSLDGAQEAITEYRVLGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGD 356

Query: 624  YKYGWYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPN 445
            YKYGWY+HK W+Q+ + D DP+TG+ + ++ H +L V +G+VL+KVPLLHLHCREL IPN
Sbjct: 357  YKYGWYVHKCWKQMPRADFDPETGKPYKMRRHHNLAVQKGSVLSKVPLLHLHCRELVIPN 416

Query: 444  VAKKLGLI-DSN----CESAYKKNTLRFVAPLPTHMAMSWNVMASCL 319
            + K      D+N    C+S  K++ LRFVAP+P+HM +SWNVM+SCL
Sbjct: 417  IEKYFEKSQDANKPMKCKS--KQDVLRFVAPMPSHMKISWNVMSSCL 461


>gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japonica Group]
          Length = 509

 Score =  401 bits (1030), Expect = e-109
 Identities = 202/351 (57%), Positives = 258/351 (73%), Gaps = 10/351 (2%)
 Frame = -1

Query: 1341 KPVGGRDVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAI 1162
            K +   DV+  G  ++LPVS+   +I KKRYE +P  T+HPN DEI Y+R LV++KD AI
Sbjct: 162  KKIKHNDVMEPGMRIHLPVSVAEGEI-KKRYETIPTATLHPNKDEIEYLRRLVIHKDSAI 220

Query: 1161 IVLNRPTHLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESI 982
            +VLN+P  +P + +L +HNSMD LAAA LSY  EEGPK+VHR+DRESSG+L+ GRT+ES 
Sbjct: 221  LVLNKPPKVPMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESF 280

Query: 981  QCLHDLFREKNIMPSENKN-SVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPK 805
              LH LF   N+  + ++  +   E + QRYWALVIG PKE+EG+ISAPLSKV LD+   
Sbjct: 281  TRLHWLFTSVNLAKTNSQVWNAACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKA 340

Query: 804  ERVIISR-SELDGPQEAVTQYRVLGPTINGCSWLELCPLTGRKHQLRVHCAEALGTPIVG 628
            ERVI++  S +DG QEAVT YRV+GPTI+GCSW+EL PLTGRKHQLRVHCAEALGTPIVG
Sbjct: 341  ERVILAHPSGIDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVG 400

Query: 627  DYKYGWYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIP 448
            DYKYGW++H+RW+Q  Q D +P TG  + L+    L + +G+VL+KVPLLHLHCRE+ IP
Sbjct: 401  DYKYGWFVHQRWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIP 460

Query: 447  NVAKKLGLIDSNCE--------SAYKKNTLRFVAPLPTHMAMSWNVMASCL 319
            N+AK    + SN E        S  K N LRF+AP+P HM +SWN+M+S L
Sbjct: 461  NIAK---FLSSNGEWHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSSYL 508


>ref|NP_001062265.1| Os08g0520100 [Oryza sativa Japonica Group]
            gi|122234516|sp|Q0J4D4.1|PUS3_ORYSJ RecName: Full=RNA
            pseudouridine synthase 3, mitochondrial; AltName:
            Full=RNA pseudouridylate synthase 3; AltName:
            Full=RNA-uridine isomerase 3; Flags: Precursor
            gi|113624234|dbj|BAF24179.1| Os08g0520100 [Oryza sativa
            Japonica Group] gi|125562210|gb|EAZ07658.1| hypothetical
            protein OsI_29911 [Oryza sativa Indica Group]
          Length = 475

 Score =  401 bits (1030), Expect = e-109
 Identities = 202/351 (57%), Positives = 258/351 (73%), Gaps = 10/351 (2%)
 Frame = -1

Query: 1341 KPVGGRDVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAI 1162
            K +   DV+  G  ++LPVS+   +I KKRYE +P  T+HPN DEI Y+R LV++KD AI
Sbjct: 128  KKIKHNDVMEPGMRIHLPVSVAEGEI-KKRYETIPTATLHPNKDEIEYLRRLVIHKDSAI 186

Query: 1161 IVLNRPTHLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESI 982
            +VLN+P  +P + +L +HNSMD LAAA LSY  EEGPK+VHR+DRESSG+L+ GRT+ES 
Sbjct: 187  LVLNKPPKVPMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESF 246

Query: 981  QCLHDLFREKNIMPSENKN-SVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPK 805
              LH LF   N+  + ++  +   E + QRYWALVIG PKE+EG+ISAPLSKV LD+   
Sbjct: 247  TRLHWLFTSVNLAKTNSQVWNAACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKA 306

Query: 804  ERVIISR-SELDGPQEAVTQYRVLGPTINGCSWLELCPLTGRKHQLRVHCAEALGTPIVG 628
            ERVI++  S +DG QEAVT YRV+GPTI+GCSW+EL PLTGRKHQLRVHCAEALGTPIVG
Sbjct: 307  ERVILAHPSGIDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVG 366

Query: 627  DYKYGWYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIP 448
            DYKYGW++H+RW+Q  Q D +P TG  + L+    L + +G+VL+KVPLLHLHCRE+ IP
Sbjct: 367  DYKYGWFVHQRWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIP 426

Query: 447  NVAKKLGLIDSNCE--------SAYKKNTLRFVAPLPTHMAMSWNVMASCL 319
            N+AK    + SN E        S  K N LRF+AP+P HM +SWN+M+S L
Sbjct: 427  NIAK---FLSSNGEWHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSSYL 474


>ref|XP_003572398.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like
            [Brachypodium distachyon]
          Length = 479

 Score =  400 bits (1029), Expect = e-109
 Identities = 201/349 (57%), Positives = 257/349 (73%), Gaps = 8/349 (2%)
 Frame = -1

Query: 1341 KPVGGRDVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAI 1162
            K +   +V+  G  ++LPVS+   +I KKRYE +P  T+HPN DEI Y++ LV+YKD AI
Sbjct: 132  KKIKHSEVMEPGMRIHLPVSVAEAEI-KKRYETIPAATLHPNKDEIEYLKRLVIYKDSAI 190

Query: 1161 IVLNRPTHLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESI 982
            +VLN+P  +P +  L +HNSMD LAAA LSY  E+GPK+VHR+DR++SG+L+MGRT+ES 
Sbjct: 191  LVLNKPPKVPMKGHLPVHNSMDVLAAAALSYGNEDGPKLVHRLDRDTSGLLLMGRTKESF 250

Query: 981  QCLHDLFREKNIMPSENK--NSVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKP 808
              LH LF    +  + +   NS   E + QRYWALVIG PKE EGVISAPL+KV LD+  
Sbjct: 251  TRLHWLFTSVKLARTASPIWNSAC-ESYLQRYWALVIGTPKESEGVISAPLTKVLLDDGK 309

Query: 807  KERVIISR-SELDGPQEAVTQYRVLGPTINGCSWLELCPLTGRKHQLRVHCAEALGTPIV 631
             ERVI++  S +DG QEAVT+YRV+GPTINGCSW+ELCPLTGRKHQLRVHCAEALGTPIV
Sbjct: 310  AERVILAHPSGIDGAQEAVTEYRVMGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIV 369

Query: 630  GDYKYGWYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAI 451
            GDYKYGW++H+RW+Q  Q D +P TG ++ L+    L V +G+VL+KVPLLHLHCRE+ +
Sbjct: 370  GDYKYGWFVHQRWKQNPQPDFEPFTGEQYKLRRPEGLEVQKGSVLSKVPLLHLHCREMVV 429

Query: 450  PNVAKKLGLI-----DSNCESAYKKNTLRFVAPLPTHMAMSWNVMASCL 319
            PN+AK L        D    S  K N LRF+AP+P HM +SWN+M+S L
Sbjct: 430  PNIAKFLSNTGDWHDDGTPWSKEKPNLLRFIAPMPAHMKISWNIMSSYL 478


>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
            vinifera]
          Length = 479

 Score =  399 bits (1026), Expect = e-108
 Identities = 197/346 (56%), Positives = 265/346 (76%), Gaps = 11/346 (3%)
 Frame = -1

Query: 1323 DVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRP 1144
            +V+ +G  +Y+PVS+   +I  KR++ +P GT+HPNADEI Y++ LV YKD AI+VLN+P
Sbjct: 136  EVMEAGTRIYVPVSVAEARI-SKRFDTIPSGTLHPNADEIEYLQRLVTYKDPAILVLNKP 194

Query: 1143 THLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDL 964
              +P + +L +HNSMDALAAA L+++YEEGPK+VHR+DRESSG+L+MGRT+ES+  LH L
Sbjct: 195  PKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHLHWL 254

Query: 963  FREKNIMPSENKNSVRDEIFE---QRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVI 793
            F + N   S +K    D+  E   QRYWALVIG PK+KEGVI APLSKV LD+   ERVI
Sbjct: 255  FSDINKAKSLSK--AWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVI 312

Query: 792  IS-RSELDGPQEAVTQYRVLGPTINGCSWLELCPLTGRKHQLRVHCAEALGTPIVGDYKY 616
            ++ +S L+  QEA+T+YRVLGP INGCSW+ELCP T RKHQLRVHCAEALGTPIVGDYKY
Sbjct: 313  LANQSGLEASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKY 372

Query: 615  GWYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAK 436
            GW++H+RW+Q+ + D++P TG+ + ++    L+V +G+VL+KVPLLHLHCREL +PN+AK
Sbjct: 373  GWFVHRRWKQMPRVDLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAK 432

Query: 435  KLGLIDSNCES-------AYKKNTLRFVAPLPTHMAMSWNVMASCL 319
             L ++D   ++       + K + LRFVA +P HM +SWN+M+S L
Sbjct: 433  FLPILDPKPKNQNQYPKLSLKPDILRFVASMPNHMKISWNLMSSYL 478


>ref|XP_004974856.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like, partial
            [Setaria italica]
          Length = 464

 Score =  397 bits (1020), Expect = e-108
 Identities = 198/348 (56%), Positives = 259/348 (74%), Gaps = 7/348 (2%)
 Frame = -1

Query: 1341 KPVGGRDVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAI 1162
            K +   DV+  G  ++LPVS+   +I KKRYE +P  T+HPN DEI Y+R LV+++D +I
Sbjct: 117  KKIKHNDVMEPGMRIHLPVSVAEGEI-KKRYETIPTATLHPNKDEIEYLRRLVIHRDSSI 175

Query: 1161 IVLNRPTHLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESI 982
            +VLN+P  +P +  L +HNSMD LAAA LSY  +EGPK+VHR+DRESSG+++MGRT+ES 
Sbjct: 176  LVLNKPPKVPMKGHLPVHNSMDVLAAAALSYGNKEGPKLVHRLDRESSGLILMGRTKESF 235

Query: 981  QCLHDLFREKNIMPSENKN-SVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPK 805
              LH LF   N+  + ++  +   E + Q+YWALVIG PKE+EGVISAP+SKV LD+   
Sbjct: 236  TQLHWLFTSVNLARTTSQTWNKACEAYVQKYWALVIGTPKEREGVISAPISKVLLDDGKA 295

Query: 804  ERVIISR-SELDGPQEAVTQYRVLGPTINGCSWLELCPLTGRKHQLRVHCAEALGTPIVG 628
            ERVI++  S +DG QEA+T+YRV+GPTINGCSW+EL PLTGRKHQLRVHCAEALGTPIVG
Sbjct: 296  ERVILAHPSGIDGAQEAITEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVG 355

Query: 627  DYKYGWYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIP 448
            DYKYGW++H+RW+Q  Q D +P TG  + ++    L V +G+VL+KVPLLHLHCRE+ +P
Sbjct: 356  DYKYGWFVHQRWKQNPQPDFEPFTGEPYKIRRPEGLEVQKGSVLSKVPLLHLHCREMVLP 415

Query: 447  NVAKKLGLI----DSNCESAYKK-NTLRFVAPLPTHMAMSWNVMASCL 319
            N+AK L  I    D     A +K N LRF+AP+P HM +SWNVM+S L
Sbjct: 416  NIAKFLSSIGEWHDGGAAWAKEKPNLLRFIAPMPPHMKISWNVMSSYL 463


>dbj|BAD09700.1| putative ribosomal large subunit pseudouridine synthase C protein
            [Oryza sativa Japonica Group] gi|42409169|dbj|BAD10435.1|
            putative ribosomal large subunit pseudouridine synthase C
            protein [Oryza sativa Japonica Group]
          Length = 340

 Score =  396 bits (1017), Expect = e-107
 Identities = 199/343 (58%), Positives = 254/343 (74%), Gaps = 10/343 (2%)
 Frame = -1

Query: 1317 LSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRPTH 1138
            +  G  ++LPVS+   +I KKRYE +P  T+HPN DEI Y+R LV++KD AI+VLN+P  
Sbjct: 1    MEPGMRIHLPVSVAEGEI-KKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKPPK 59

Query: 1137 LPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDLFR 958
            +P + +L +HNSMD LAAA LSY  EEGPK+VHR+DRESSG+L+ GRT+ES   LH LF 
Sbjct: 60   VPMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFT 119

Query: 957  EKNIMPSENKN-SVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVIISR- 784
              N+  + ++  +   E + QRYWALVIG PKE+EG+ISAPLSKV LD+   ERVI++  
Sbjct: 120  SVNLAKTNSQVWNAACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHP 179

Query: 783  SELDGPQEAVTQYRVLGPTINGCSWLELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWYI 604
            S +DG QEAVT YRV+GPTI+GCSW+EL PLTGRKHQLRVHCAEALGTPIVGDYKYGW++
Sbjct: 180  SGIDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFV 239

Query: 603  HKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAKKLGL 424
            H+RW+Q  Q D +P TG  + L+    L + +G+VL+KVPLLHLHCRE+ IPN+AK    
Sbjct: 240  HQRWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAK---F 296

Query: 423  IDSNCE--------SAYKKNTLRFVAPLPTHMAMSWNVMASCL 319
            + SN E        S  K N LRF+AP+P HM +SWN+M+S L
Sbjct: 297  LSSNGEWHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSSYL 339


>gb|EOY26277.1| Pseudouridine synthase family protein [Theobroma cacao]
          Length = 471

 Score =  395 bits (1016), Expect = e-107
 Identities = 197/343 (57%), Positives = 264/343 (76%), Gaps = 8/343 (2%)
 Frame = -1

Query: 1323 DVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRP 1144
            +V+  G  V++PVSI   +I  KR++ +P GT++PN DEI Y++ LV YKD AI+VLN+P
Sbjct: 130  EVMEVGTRVWVPVSIAETRI-SKRFDCIPSGTLYPNKDEIDYLQRLVKYKDYAILVLNKP 188

Query: 1143 THLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDL 964
              LP + SL +HNSMDALAAA LSY+++EGPK+VHR+DRESSG+L+MGRT+ES+  LH L
Sbjct: 189  PKLPVKGSLPVHNSMDALAAAALSYDHDEGPKLVHRLDRESSGLLLMGRTKESVAHLHWL 248

Query: 963  FREKNIMPSENK--NSVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVII 790
            F + N + S  K  N   D  + QR+WALVIG PKEKEG+I APLSK+ LD+   ERVI+
Sbjct: 249  FNDLNTVKSSCKAWNDACDVKY-QRFWALVIGTPKEKEGLICAPLSKILLDDGKTERVIL 307

Query: 789  SRSE-LDGPQEAVTQYRVLGPTINGCSWLELCPLTGRKHQLRVHCAEALGTPIVGDYKYG 613
            +++  L+  QEA+T+YRVLGP INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYG
Sbjct: 308  AQNVGLEASQEAITEYRVLGPMINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 367

Query: 612  WYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAKK 433
            W++H+RW+Q+ + D++P TG+ + L+    L+V +G+VL+KVPLLHLHCREL +PN+AK 
Sbjct: 368  WFVHRRWKQMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKF 427

Query: 432  LGLIDSNCES-----AYKKNTLRFVAPLPTHMAMSWNVMASCL 319
            L +++ N E+     + K + LRFVA +P HM +SWN+M+S L
Sbjct: 428  LPVLNKNTETLPPALSMKPDLLRFVATMPKHMKISWNLMSSYL 470


>gb|AFW61502.1| hypothetical protein ZEAMMB73_778378 [Zea mays]
          Length = 478

 Score =  395 bits (1016), Expect = e-107
 Identities = 197/348 (56%), Positives = 253/348 (72%), Gaps = 7/348 (2%)
 Frame = -1

Query: 1341 KPVGGRDVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAI 1162
            K +   D +  G  ++LPVS+    I KKRYE +P  T+HPN DEI Y+R LV+Y+D AI
Sbjct: 131  KKIKHNDAMEPGMRIHLPVSVAESDI-KKRYETIPTATLHPNKDEIEYLRRLVIYRDSAI 189

Query: 1161 IVLNRPTHLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESI 982
            +VLN+P  +P +  L +HNSMD LAAA LSY  EEGPK+VHR+DRESSG+++MGRT+ES 
Sbjct: 190  LVLNKPPKVPMKGHLPVHNSMDVLAAAALSYGSEEGPKLVHRLDRESSGLILMGRTKESF 249

Query: 981  QCLHDLFREKNIMPSENKN-SVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPK 805
              LH L    N+  + ++  +   E + Q+YWALVIG PKE+EGVISAP+SKV LD+   
Sbjct: 250  TRLHWLLTSVNLARTSSQTWNKACEAYAQKYWALVIGTPKEREGVISAPISKVLLDDGKA 309

Query: 804  ERVIISR-SELDGPQEAVTQYRVLGPTINGCSWLELCPLTGRKHQLRVHCAEALGTPIVG 628
            ERVI++  S +DG QEA+T+YRV+GPTINGCSW+EL PLTGRKHQLRVHCAEALGTPIVG
Sbjct: 310  ERVILAHPSGIDGAQEAITEYRVMGPTINGCSWIELQPLTGRKHQLRVHCAEALGTPIVG 369

Query: 627  DYKYGWYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIP 448
            DYKYGW++H+ W+Q  Q D +P TG  + L+    L + +G+VL+KVPLLHLHCRE+ IP
Sbjct: 370  DYKYGWFVHQTWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIP 429

Query: 447  NVAKKLGLIDSNCESA-----YKKNTLRFVAPLPTHMAMSWNVMASCL 319
            N+AK L       E+       K N LRFVAP+P HM +SWN+M+S L
Sbjct: 430  NIAKFLSSTGGWHENGTPWAKEKPNLLRFVAPMPPHMKISWNIMSSYL 477


>ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
            sativus]
          Length = 471

 Score =  395 bits (1015), Expect = e-107
 Identities = 192/343 (55%), Positives = 264/343 (76%), Gaps = 8/343 (2%)
 Frame = -1

Query: 1323 DVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRP 1144
            +++ +G  ++LPVS+   K+  +R++ +P GT++PNADEI+Y++ LV YKD AIIVLN+P
Sbjct: 131  EIMETGARIHLPVSVAEMKV-ARRFDTIPSGTLYPNADEIKYLQRLVKYKDSAIIVLNKP 189

Query: 1143 THLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDL 964
              LP + +L +HNSMDALA A LSY+Y++GPK+VHR+DRESSGIL+MGRT+ES+  L  L
Sbjct: 190  PKLPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRTKESVDHLQWL 249

Query: 963  FREKNIMPSENKNSVRDEIFE---QRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVI 793
            F   NI  ++      +E      Q+YWALVIGCP+E+EGVISAPLSKV LD+   ERVI
Sbjct: 250  F--SNIRNAKFTCKAWEEACNATYQKYWALVIGCPREREGVISAPLSKVLLDDGKTERVI 307

Query: 792  IS-RSELDGPQEAVTQYRVLGPTINGCSWLELCPLTGRKHQLRVHCAEALGTPIVGDYKY 616
            ++ ++ ++  QEA+T+YRVLGPTINGCSW+ELCP T RKHQLR+HCAEALGTPIVGDYKY
Sbjct: 308  LANKASIEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQLRIHCAEALGTPIVGDYKY 367

Query: 615  GWYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAK 436
            GW++H+RW+Q+ + DV+P +GR + L+    L+V +G+VL+KVPLLHLHCREL +PN+AK
Sbjct: 368  GWFVHRRWKQMPRVDVEPISGRPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAK 427

Query: 435  KLGLI----DSNCESAYKKNTLRFVAPLPTHMAMSWNVMASCL 319
             L +      +   S++  + LRFVA +P+HM +SWN+M+S L
Sbjct: 428  FLNVFYGKGPNRPVSSFDSDLLRFVARMPSHMRISWNLMSSYL 470


>ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
            sativus]
          Length = 471

 Score =  395 bits (1014), Expect = e-107
 Identities = 191/343 (55%), Positives = 264/343 (76%), Gaps = 8/343 (2%)
 Frame = -1

Query: 1323 DVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRP 1144
            +++ +G  ++LPVS+   K+  +R++ +P GT++PNADEI+Y++ LV YKD AIIVLN+P
Sbjct: 131  EIMETGARIHLPVSVAEMKV-ARRFDTIPSGTLYPNADEIKYLQRLVKYKDSAIIVLNKP 189

Query: 1143 THLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDL 964
              LP + +L +HNSMDALA A LSY+Y++GPK+VHR+DRESSGIL+MGRT+ES+  L  L
Sbjct: 190  PKLPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRTKESVDHLQWL 249

Query: 963  FREKNIMPSENKNSVRDEIFE---QRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVI 793
            F   NI  ++      +E      Q+YWALVIGCP+E+EGVISAPLSKV LD+   ERV+
Sbjct: 250  F--SNIRNAKFTCKAWEEACNATYQKYWALVIGCPREREGVISAPLSKVLLDDGKTERVV 307

Query: 792  IS-RSELDGPQEAVTQYRVLGPTINGCSWLELCPLTGRKHQLRVHCAEALGTPIVGDYKY 616
            ++ ++ ++  QEA+T+YRVLGPTINGCSW+ELCP T RKHQLR+HCAEALGTPIVGDYKY
Sbjct: 308  LANKASIEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQLRIHCAEALGTPIVGDYKY 367

Query: 615  GWYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAK 436
            GW++H+RW+Q+ + DV+P +GR + L+    L+V +G+VL+KVPLLHLHCREL +PN+AK
Sbjct: 368  GWFVHRRWKQMPRVDVEPISGRPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAK 427

Query: 435  KLGLI----DSNCESAYKKNTLRFVAPLPTHMAMSWNVMASCL 319
             L +      +   S++  + LRFVA +P+HM +SWN+M+S L
Sbjct: 428  FLNVFYGKGPNRPVSSFDSDLLRFVARMPSHMRISWNLMSSYL 470


>ref|XP_004300876.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Fragaria
            vesca subsp. vesca]
          Length = 469

 Score =  394 bits (1012), Expect = e-107
 Identities = 198/354 (55%), Positives = 265/354 (74%), Gaps = 9/354 (2%)
 Frame = -1

Query: 1353 GAARKPVGGRDVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYK 1174
            G   + +   +V+  G  VY+ VSI   K+  +R++ +P  T++PNADEI Y++ LV YK
Sbjct: 118  GKHMRKIRPSEVMEEGARVYVAVSIAESKV-SRRFDCIPSETLYPNADEIDYLQRLVKYK 176

Query: 1173 DRAIIVLNRPTHLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRT 994
            D AIIVLN+P  LP + ++ +HNSMDALAAA LSY+Y+EGPK+VHR+DRESSGIL+MGRT
Sbjct: 177  DSAIIVLNKPPKLPVKGNVPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGILLMGRT 236

Query: 993  QESIQCLHDLFREKNIMPSENK---NSVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVA 823
            +ES+  L  L+ + N+  S  +   ++ R +   QRYWALVIG PKEKEG+I APL+KV 
Sbjct: 237  KESLYLLQSLYTDINVGKSSCRAWNDACRAKC--QRYWALVIGSPKEKEGLICAPLTKVL 294

Query: 822  LDEKPKERVIIS-RSELDGPQEAVTQYRVLGPTINGCSWLELCPLTGRKHQLRVHCAEAL 646
            LD+   ERVI++ +S L+  Q A+TQYRVLGPTINGCSW+EL PLT RKHQLRVHCAEAL
Sbjct: 295  LDDGKTERVILAHQSGLEASQPALTQYRVLGPTINGCSWIELQPLTSRKHQLRVHCAEAL 354

Query: 645  GTPIVGDYKYGWYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHC 466
            GTPIVGDYKYGW++H+RW+Q+   D++P TG ++ L+    L+V +G+V++KVPLLHLHC
Sbjct: 355  GTPIVGDYKYGWFVHRRWKQMPHIDIEPATGLQYKLRRPAGLDVQKGSVVSKVPLLHLHC 414

Query: 465  RELAIPNVAKKLGLIDSNCESAY-----KKNTLRFVAPLPTHMAMSWNVMASCL 319
            REL +PN+AK L L+D   ++ Y     K + LRFVA +PTHM +SWN+M+S L
Sbjct: 415  RELVLPNIAKFLCLLDQKLDNRYTVDSSKPDVLRFVASMPTHMKISWNLMSSYL 468


>ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
            X1 [Glycine max]
          Length = 476

 Score =  392 bits (1007), Expect = e-106
 Identities = 195/342 (57%), Positives = 261/342 (76%), Gaps = 7/342 (2%)
 Frame = -1

Query: 1323 DVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRP 1144
            +V+  G  V++PVSI   +I  KRY+ +P GT++PNADEI+Y++ LV+YKD AIIVLN+P
Sbjct: 135  EVMKRGARVHVPVSICETRI-SKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKP 193

Query: 1143 THLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDL 964
              LP + SL +HNSMDALAAA LSY+Y+EGPK+VHR+DRESSGIL++GRT++S+  L  L
Sbjct: 194  PKLPVKGSLPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGILLLGRTKDSVSHLQWL 253

Query: 963  FREKNIMPSENKN-SVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVIIS 787
            F   N   S  K+ +   E   QRYWALVIG PKEKEG+I APLSKV L++   ER+I++
Sbjct: 254  FSNINNAKSSCKDWNEACEATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERIILA 313

Query: 786  R-SELDGPQEAVTQYRVLGPTINGCSWLELCPLTGRKHQLRVHCAEALGTPIVGDYKYGW 610
              S ++  QEAVT+YRVLGP INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 314  HHSSVEPRQEAVTEYRVLGPQINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGW 373

Query: 609  YIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAKKL 430
            ++H RW+Q+ + D++P TG+ + L+    L+V +G+VL+KVPLLHLHCREL +PN+ K +
Sbjct: 374  FVHSRWKQMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIVKFM 433

Query: 429  GLIDSNCES-----AYKKNTLRFVAPLPTHMAMSWNVMASCL 319
             +++++ E        + + LRFVA +P+HM +SWN+M+S L
Sbjct: 434  HVLNNSSEELRTSLREQPDVLRFVATMPSHMRISWNLMSSYL 475


>gb|AFW61501.1| hypothetical protein ZEAMMB73_778378 [Zea mays]
          Length = 340

 Score =  392 bits (1007), Expect = e-106
 Identities = 195/340 (57%), Positives = 250/340 (73%), Gaps = 7/340 (2%)
 Frame = -1

Query: 1317 LSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRPTH 1138
            +  G  ++LPVS+    I KKRYE +P  T+HPN DEI Y+R LV+Y+D AI+VLN+P  
Sbjct: 1    MEPGMRIHLPVSVAESDI-KKRYETIPTATLHPNKDEIEYLRRLVIYRDSAILVLNKPPK 59

Query: 1137 LPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDLFR 958
            +P +  L +HNSMD LAAA LSY  EEGPK+VHR+DRESSG+++MGRT+ES   LH L  
Sbjct: 60   VPMKGHLPVHNSMDVLAAAALSYGSEEGPKLVHRLDRESSGLILMGRTKESFTRLHWLLT 119

Query: 957  EKNIMPSENKN-SVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVIISR- 784
              N+  + ++  +   E + Q+YWALVIG PKE+EGVISAP+SKV LD+   ERVI++  
Sbjct: 120  SVNLARTSSQTWNKACEAYAQKYWALVIGTPKEREGVISAPISKVLLDDGKAERVILAHP 179

Query: 783  SELDGPQEAVTQYRVLGPTINGCSWLELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWYI 604
            S +DG QEA+T+YRV+GPTINGCSW+EL PLTGRKHQLRVHCAEALGTPIVGDYKYGW++
Sbjct: 180  SGIDGAQEAITEYRVMGPTINGCSWIELQPLTGRKHQLRVHCAEALGTPIVGDYKYGWFV 239

Query: 603  HKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAKKLGL 424
            H+ W+Q  Q D +P TG  + L+    L + +G+VL+KVPLLHLHCRE+ IPN+AK L  
Sbjct: 240  HQTWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSS 299

Query: 423  IDSNCESA-----YKKNTLRFVAPLPTHMAMSWNVMASCL 319
                 E+       K N LRFVAP+P HM +SWN+M+S L
Sbjct: 300  TGGWHENGTPWAKEKPNLLRFVAPMPPHMKISWNIMSSYL 339


>dbj|BAJ88492.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 357

 Score =  392 bits (1007), Expect = e-106
 Identities = 196/348 (56%), Positives = 254/348 (72%), Gaps = 7/348 (2%)
 Frame = -1

Query: 1341 KPVGGRDVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAI 1162
            K +   +V+  G  ++LPVS+   +I KKRYE +P  T+HPN DEI Y++ LV+YKD AI
Sbjct: 10   KRIKHSEVMEPGMRIHLPVSVAEAEI-KKRYETIPTATLHPNRDEIEYLKRLVIYKDSAI 68

Query: 1161 IVLNRPTHLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESI 982
            +VLN+P  +P + +L +HNSMD LAAA LS+  EEGPK+VHR+DR+SSG+L+MGRT+E  
Sbjct: 69   LVLNKPPKVPMKGNLPVHNSMDVLAAAALSFGNEEGPKLVHRLDRDSSGLLLMGRTREGF 128

Query: 981  QCLHDLFREKNIMPSENKN-SVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPK 805
              LH LF    +  + ++  +   E + QRYWALVIG P E EGVISAPL+KV LD+   
Sbjct: 129  TRLHWLFTSIKLAKTASQTWNTACESYLQRYWALVIGTPTESEGVISAPLTKVLLDDGKA 188

Query: 804  ERVIISR-SELDGPQEAVTQYRVLGPTINGCSWLELCPLTGRKHQLRVHCAEALGTPIVG 628
            ERVI++  S +DG QEAVT+YRV+GPTINGCSW+EL PLTGRKHQLRVHCAEALGTPIVG
Sbjct: 189  ERVILAHPSGIDGAQEAVTEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVG 248

Query: 627  DYKYGWYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIP 448
            DYKYGW++H+RW+Q  Q D +P TG  + L+    L V +G+VL+KVPLLHLHCRE+ +P
Sbjct: 249  DYKYGWFVHQRWKQNPQPDFEPFTGEPYKLRRPEGLEVQKGSVLSKVPLLHLHCREMVVP 308

Query: 447  NVAKKLGLI-----DSNCESAYKKNTLRFVAPLPTHMAMSWNVMASCL 319
            N+AK L        +    S  K N LRF+AP+P HM +SWN+M+S L
Sbjct: 309  NIAKFLSNTGEWHDNGTPWSKEKPNLLRFIAPMPAHMKISWNIMSSYL 356


>ref|XP_006659607.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like [Oryza
            brachyantha]
          Length = 340

 Score =  391 bits (1005), Expect = e-106
 Identities = 196/340 (57%), Positives = 251/340 (73%), Gaps = 7/340 (2%)
 Frame = -1

Query: 1317 LSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRPTH 1138
            +  G  ++LPVS+   +I KKRYE +P  T+HPN DEI Y++ LV++KD +I+VLN+P  
Sbjct: 1    MEPGMRIHLPVSVAEGEI-KKRYETIPTATLHPNKDEIEYLKRLVIHKDSSILVLNKPPK 59

Query: 1137 LPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDLFR 958
            +P +  L +HNSMD LAAA LSY  +EGPK+VHR+DRESSG+L+MGRT+ES   LH LF 
Sbjct: 60   VPMKGHLPVHNSMDVLAAAALSYGNDEGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFT 119

Query: 957  EKNIMPSENKN-SVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVIISR- 784
              N+  + ++  +   E + QRYWALVIG PKE EG+ISAPLSKV LD+   ERVI++  
Sbjct: 120  SVNLAKTNSEAWNAACEAYMQRYWALVIGTPKESEGIISAPLSKVLLDDGKAERVILAHP 179

Query: 783  SELDGPQEAVTQYRVLGPTINGCSWLELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWYI 604
            S +DG QEAVT YRV+GPTI+GCSW+EL PLTGRKHQLRVHCAEALGTPIVGDYKYGW++
Sbjct: 180  SGIDGAQEAVTAYRVMGPTISGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFV 239

Query: 603  HKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAKKLGL 424
            H+RW+Q  Q D +P TG  + L+    L + +G+VL+KVPLLHLHCRE+ IPN+AK L  
Sbjct: 240  HQRWKQNPQPDFEPFTGEPYKLRRPEGLAIQKGSVLSKVPLLHLHCREMVIPNIAKFLSN 299

Query: 423  IDSNCE-----SAYKKNTLRFVAPLPTHMAMSWNVMASCL 319
                 E     S  K N LRF+AP+P HM +SWN+M+S L
Sbjct: 300  TGEWHENGTPWSKEKPNLLRFIAPMPAHMKISWNIMSSYL 339


>gb|EMT10490.1| RNA pseudourine synthase 3, mitochondrial [Aegilops tauschii]
          Length = 368

 Score =  390 bits (1003), Expect = e-106
 Identities = 196/347 (56%), Positives = 251/347 (72%), Gaps = 6/347 (1%)
 Frame = -1

Query: 1341 KPVGGRDVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAI 1162
            K +   +V+  G  ++LPVS+   +I KKRYE +P  T+HPN DEI Y++ LV+YKD AI
Sbjct: 32   KKIKHSEVMEPGMRIHLPVSVAEAEI-KKRYETIPTATLHPNRDEIEYLKRLVIYKDSAI 90

Query: 1161 IVLNRPTHLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESI 982
            +VLN+P  +P + +L +HNSMD LAAA LSY  EEGPK+VHR+DR++SG+L+MGRT+ES 
Sbjct: 91   LVLNKPPKVPMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRDTSGLLLMGRTRESF 150

Query: 981  QCLHDLFREKNIMPSENKNSVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPKE 802
              LH LF    +  + +          QRYWALVIG P E EG+ISAPL+KV LD+   E
Sbjct: 151  TRLHWLFTSIKLARTAS----------QRYWALVIGTPTESEGIISAPLTKVLLDDGKAE 200

Query: 801  RVIISR-SELDGPQEAVTQYRVLGPTINGCSWLELCPLTGRKHQLRVHCAEALGTPIVGD 625
            RVI++  S +DG QEAVT+YRV+GPTINGCSW+EL PLTGRKHQLRVHCAEALGTPIVGD
Sbjct: 201  RVILAHPSGIDGAQEAVTEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGD 260

Query: 624  YKYGWYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPN 445
            YKYGW++H+RW+Q  Q D +P TG  + L+    L V +G+VL+KVPLLHLHCRE+ +PN
Sbjct: 261  YKYGWFVHQRWKQNPQPDFEPFTGEPYKLRRPEGLEVQKGSVLSKVPLLHLHCREMVVPN 320

Query: 444  VAKKLGLI-----DSNCESAYKKNTLRFVAPLPTHMAMSWNVMASCL 319
            +AK L        +    S  K N LRF+APLP HM +SWN+M+S L
Sbjct: 321  IAKFLSNTGEWHDNGTPWSKEKPNLLRFIAPLPAHMKISWNIMSSYL 367


>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  390 bits (1003), Expect = e-106
 Identities = 196/348 (56%), Positives = 264/348 (75%), Gaps = 13/348 (3%)
 Frame = -1

Query: 1323 DVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYK--DRAIIVLN 1150
            +V+ +G  +Y+PVS+   +I  KR++ +P GT+HPNADEI Y++ L L K  D AI+VLN
Sbjct: 136  EVMEAGTRIYVPVSVAEARI-SKRFDTIPSGTLHPNADEIEYLQRLWLLKFQDPAILVLN 194

Query: 1149 RPTHLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLH 970
            +P  +P + +L +HNSMDALAAA L+++YEEGPK+VHR+DRESSG+L+MGRT+ES+  LH
Sbjct: 195  KPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHLH 254

Query: 969  DLFREKNIMPSENKNSVRDEIFE---QRYWALVIGCPKEKEGVISAPLSKVALDEKPKER 799
             LF + N   S +K    D+  E   QRYWALVIG PK+KEGVI APLSKV LD+   ER
Sbjct: 255  WLFSDINKAKSLSK--AWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTER 312

Query: 798  VIIS-RSELDGPQEAVTQYRVLGPTINGCSWLELCPLTGRKHQLRVHCAEALGTPIVGDY 622
            VI++ +S L+  QEA+T+YRVLGP INGCSW+ELCP T RKHQLRVHCAEALGTPIVGDY
Sbjct: 313  VILANQSGLEASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDY 372

Query: 621  KYGWYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNV 442
            KYGW++H+RW+Q+ + D++P TG+ + ++    L+V +G+VL+KVPLLHLHCREL +PN+
Sbjct: 373  KYGWFVHRRWKQMPRVDLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNI 432

Query: 441  AKKLGLIDSNCES-------AYKKNTLRFVAPLPTHMAMSWNVMASCL 319
            AK L ++D   ++       + K + LRFVA +P HM +SWN+M+S L
Sbjct: 433  AKFLPILDPKPKNQNQYPKLSLKPDILRFVASMPNHMKISWNLMSSYL 480


>ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform X1
            [Cicer arietinum]
          Length = 479

 Score =  389 bits (1000), Expect = e-105
 Identities = 194/343 (56%), Positives = 261/343 (76%), Gaps = 8/343 (2%)
 Frame = -1

Query: 1323 DVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYKDRAIIVLNRP 1144
            +V+  G  V++ VS+   KI  KR++P+P GT+ PNADEI+Y++ LV+YKD AII+LN+P
Sbjct: 138  EVMKPGARVHVSVSMAETKI-SKRFDPIPSGTLCPNADEIKYLQRLVIYKDSAIIMLNKP 196

Query: 1143 THLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRTQESIQCLHDL 964
              LP + +L +HNSMDALAAA LSY+Y++GPK+VHR+DRESSGIL++GRT++S+  L  L
Sbjct: 197  PKLPVKGNLPVHNSMDALAAAALSYDYDDGPKLVHRLDRESSGILLLGRTKDSVSHLQWL 256

Query: 963  FREKNIMPSENK--NSVRDEIFEQRYWALVIGCPKEKEGVISAPLSKVALDEKPKERVII 790
            F   N   S  K  N   +  + QRYWALVIG PKEKEG+I APLSKV L++   ERVI+
Sbjct: 257  FSNINNTKSSCKAWNDACESTY-QRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERVIL 315

Query: 789  SR-SELDGPQEAVTQYRVLGPTINGCSWLELCPLTGRKHQLRVHCAEALGTPIVGDYKYG 613
            +  S ++  QEAVT+YRVLGP INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYG
Sbjct: 316  AHESSIEPHQEAVTEYRVLGPKINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYG 375

Query: 612  WYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHCRELAIPNVAKK 433
            W++H RW+Q+ + D++P TG+ + L+    L+V +G+VL+KVPLLHLHCRELA+PN+AK 
Sbjct: 376  WFVHSRWKQMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELALPNIAKF 435

Query: 432  LGLIDSNCES-----AYKKNTLRFVAPLPTHMAMSWNVMASCL 319
            L +++ + +      + + + LRFVA +P HM +SWN+M+S L
Sbjct: 436  LNVLEKSSQQLDPSLSLQPDVLRFVATMPNHMRISWNLMSSYL 478


>ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Populus trichocarpa]
            gi|550341843|gb|ERP62872.1| hypothetical protein
            POPTR_0004s23670g [Populus trichocarpa]
          Length = 462

 Score =  388 bits (997), Expect = e-105
 Identities = 192/354 (54%), Positives = 266/354 (75%), Gaps = 9/354 (2%)
 Frame = -1

Query: 1353 GAARKPVGGRDVLSSGCTVYLPVSIYYRKIWKKRYEPLPRGTMHPNADEIRYIRSLVLYK 1174
            G   + +   DV+  G  +++PVS+    I  KR++ +P GT++PNADEI Y++ LV YK
Sbjct: 111  GKPMRKIKPSDVMEVGARIHIPVSVAETAI-SKRFDTIPSGTLYPNADEIEYLQRLVKYK 169

Query: 1173 DRAIIVLNRPTHLPAQASLGIHNSMDALAAATLSYEYEEGPKVVHRIDRESSGILVMGRT 994
            D A++VLN+P  +P + ++ IHNSMDALAAA LSY Y+EGPK+VHR+DRESSG+L+MGRT
Sbjct: 170  DSALLVLNKPPKVPVKGNMPIHNSMDALAAAALSYGYDEGPKLVHRLDRESSGLLLMGRT 229

Query: 993  QESIQCLHDLFREKNIMPSENKNSVRDEIFE---QRYWALVIGCPKEKEGVISAPLSKVA 823
            +ESI  L  LF   N   +++K    ++  E   QRYWALVIG PK+KEG+ISA LSKV 
Sbjct: 230  KESIAHLQLLFSYIN--KAQSKCHAWNDACEATYQRYWALVIGSPKDKEGLISARLSKVL 287

Query: 822  LDEKPKERVIISR-SELDGPQEAVTQYRVLGPTINGCSWLELCPLTGRKHQLRVHCAEAL 646
            LD+   ERV++++ S L+  ++AVT+YRVLGPTINGCSW+EL PLT RKHQLRVHCAEAL
Sbjct: 288  LDDGKTERVVLAQHSSLEPSRDAVTEYRVLGPTINGCSWIELRPLTSRKHQLRVHCAEAL 347

Query: 645  GTPIVGDYKYGWYIHKRWQQIRQRDVDPDTGRRFLLKLHPHLNVNRGTVLAKVPLLHLHC 466
            GTPIVGDYKYGW++H+RW+Q+ + D++P +G+ + L+    +++ +G+VLAKVPLLHLHC
Sbjct: 348  GTPIVGDYKYGWFVHRRWKQMPRVDIEPSSGKPYKLRWPEGVDIQKGSVLAKVPLLHLHC 407

Query: 465  RELAIPNVAKKLGLIDSNCESAY-----KKNTLRFVAPLPTHMAMSWNVMASCL 319
            REL +PN+AK L ++D   E+ +     + + LRFVA +P+HM +SWN+M+S L
Sbjct: 408  RELVLPNIAKFLDVLDGKSENVHPALSTRPDLLRFVASMPSHMKISWNLMSSFL 461


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