BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00004963
         (5076 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_001755844.1| predicted protein [Physcomitrella patens] gi...  1561   0.0  
ref|XP_002977127.1| hypothetical protein SELMODRAFT_443461 [Sela...  1541   0.0  
ref|XP_002992124.1| hypothetical protein SELMODRAFT_430375 [Sela...  1532   0.0  
ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III s...  1498   0.0  
ref|XP_006494574.1| PREDICTED: DNA-directed RNA polymerase III s...  1493   0.0  
ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III s...  1493   0.0  
ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citr...  1492   0.0  
ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III s...  1482   0.0  
ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III s...  1478   0.0  
gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma ...  1470   0.0  
ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III s...  1467   0.0  
gb|EOY19615.1| DNA-directed RNA polymerase isoform 7 [Theobroma ...  1458   0.0  
gb|EOY19611.1| DNA-directed RNA polymerase isoform 3 [Theobroma ...  1456   0.0  
ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put...  1453   0.0  
ref|XP_006583557.1| PREDICTED: DNA-directed RNA polymerase III s...  1447   0.0  
gb|ESW24958.1| hypothetical protein PHAVU_004G175000g [Phaseolus...  1441   0.0  
ref|NP_001050323.1| Os03g0403100 [Oryza sativa Japonica Group] g...  1440   0.0  
gb|AAP03366.1| putative RNA polymerase III [Oryza sativa Japonic...  1440   0.0  
ref|XP_006362278.1| PREDICTED: DNA-directed RNA polymerase III s...  1434   0.0  
ref|XP_004510587.1| PREDICTED: DNA-directed RNA polymerase III s...  1434   0.0  

>ref|XP_001755844.1| predicted protein [Physcomitrella patens] gi|162693163|gb|EDQ79517.1|
            predicted protein [Physcomitrella patens]
          Length = 1135

 Score = 1561 bits (4042), Expect = 0.0
 Identities = 791/1025 (77%), Positives = 873/1025 (85%), Gaps = 9/1025 (0%)
 Frame = +1

Query: 1732 LPIIL*S*QCVLTEKS*TDLTKLIM*ETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 1911
            +PI+L S +C+L  K+          E +LAK+GECPLDPGGYFVVKGTEKVILIQEQLS
Sbjct: 134  MPIMLRSSRCILAGKN----------EAQLAKVGECPLDPGGYFVVKGTEKVILIQEQLS 183

Query: 1912 KNRILIDTDSKGXXXXXXXXXXHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGI 2091
            KNRI+I TDS G          HE+KSKT ++VKHE  YL+ NTF +D+PIV+V++AMG+
Sbjct: 184  KNRIIITTDSSGSVAASVTSSTHERKSKTNMVVKHERIYLRHNTFGDDIPIVVVMRAMGM 243

Query: 2092 ESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSK 2271
            ESDQE VQMVGRDP++ GIL PSLQ CA+  IYT   ALEYLG+KV+             
Sbjct: 244  ESDQEIVQMVGRDPKYAGILNPSLQECAALKIYTSHQALEYLGSKVR------------- 290

Query: 2272 VDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLEL 2451
            VDEARDIL  V LA+VPVH+FDFR KCIY+AV++R+M+EAMLN EAVDD DYVGNKRLEL
Sbjct: 291  VDEARDILATVVLAHVPVHQFDFRAKCIYLAVIIRKMLEAMLNREAVDDMDYVGNKRLEL 350

Query: 2452 AGVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIPPHIISYGLEHAISSGN 2628
            AG L++LLFEDLFKRMN E+K  +D T SK  RST FD+ K I P  ++ GLEHAISSGN
Sbjct: 351  AGQLLSLLFEDLFKRMNAELKKSMDATLSKANRSTQFDIIKLIRPDTLTNGLEHAISSGN 410

Query: 2629 WNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCD 2808
            W VKRFKMDRKGVTQVVSRLS+IA+LGHMTRI SQFEKTRKVSGPRALQ SQWGMLCPCD
Sbjct: 411  WAVKRFKMDRKGVTQVVSRLSFIAALGHMTRISSQFEKTRKVSGPRALQPSQWGMLCPCD 470

Query: 2809 TPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNG 2988
            TPEGEACGLVKNL+LMTHVTTDEEEAPLI LC TLGVEDLSLLSGEELHS K YL+ FNG
Sbjct: 471  TPEGEACGLVKNLSLMTHVTTDEEEAPLIELCTTLGVEDLSLLSGEELHSPKTYLVFFNG 530

Query: 2989 LMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDK-QRCVYVASDGGRVCRPLVIADNG 3165
             +LG+HR+P RFA  LR LRRAGKIGEFVSV VN K QR + +ASDGGRVCRPLVIAD G
Sbjct: 531  TILGVHRRPNRFAEVLRKLRRAGKIGEFVSVHVNPKHQRNIQIASDGGRVCRPLVIADKG 590

Query: 3166 ISRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPF 3345
            +SR+KEHHMKEL+DGFRTFDDFLREGLVEYLDVNEENN+LIALYE +AT  T+HIEIEPF
Sbjct: 591  VSRVKEHHMKELKDGFRTFDDFLREGLVEYLDVNEENNSLIALYEGDATPDTTHIEIEPF 650

Query: 3346 TILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT 3525
            TILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL RMDTLLYLLVYPQRPLL+T
Sbjct: 651  TILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLQRMDTLLYLLVYPQRPLLST 710

Query: 3526 KTIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKH 3705
            K+IELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIV+KK    +KK+
Sbjct: 711  KSIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVIKKSVVPMKKY 770

Query: 3706 PNRTQDRIIGPTSSSG-----RVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREE 3870
             NRT DRI+ P   S      +V  R Q  D+DGIAA GE+IR  DIY+NKQ+P  TR  
Sbjct: 771  ANRTADRIMAPELQSSAKGGVQVVARQQLQDHDGIAAVGEMIRPGDIYVNKQSPIDTRNN 830

Query: 3871 VKNPMALPDSEYKFTPQTYK--APEPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKF 4044
            V NPMALPDS YK TPQTYK  A E +VVDKV+LTSN+E+   +K L RQTRRPE+GDKF
Sbjct: 831  VNNPMALPDSAYKRTPQTYKGAAGETAVVDKVLLTSNDENHFVVKCLIRQTRRPEVGDKF 890

Query: 4045 SSRHGQKGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGK 4224
            SSRHGQKGVCG IVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAG+  GK
Sbjct: 891  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGLHNGK 950

Query: 4225 FHYGSAFGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKL 4404
            FHYGSAFGEPSGHADKV TI ATLVKHGF YSGKD IYSGITG PLQAYIFMGPIYYQKL
Sbjct: 951  FHYGSAFGEPSGHADKVSTISATLVKHGFSYSGKDFIYSGITGSPLQAYIFMGPIYYQKL 1010

Query: 4405 KHMVVDKMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISS 4584
            KHMV+DKMHARA GPR++LTRQPTEGRSR+GGLRLGEMERDCLIAYGASMMILERLMISS
Sbjct: 1011 KHMVLDKMHARARGPRVVLTRQPTEGRSREGGLRLGEMERDCLIAYGASMMILERLMISS 1070

Query: 4585 DQFEIQVCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRL 4764
            DQF+IQVCTKCG++GYY+HKLK+  CSTCKSG+ IATMKLPYACKLLFQELQSMNIVPRL
Sbjct: 1071 DQFQIQVCTKCGMIGYYHHKLKICLCSTCKSGDNIATMKLPYACKLLFQELQSMNIVPRL 1130

Query: 4765 QLAEA 4779
             LAEA
Sbjct: 1131 TLAEA 1135


>ref|XP_002977127.1| hypothetical protein SELMODRAFT_443461 [Selaginella moellendorffii]
            gi|300155103|gb|EFJ21736.1| hypothetical protein
            SELMODRAFT_443461 [Selaginella moellendorffii]
          Length = 1386

 Score = 1541 bits (3989), Expect = 0.0
 Identities = 757/1019 (74%), Positives = 872/1019 (85%), Gaps = 3/1019 (0%)
 Frame = +1

Query: 1732 LPIIL*S*QCVLTEKS*TDLTKLIM*ETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 1911
            +P++L S +C+LT KS          + ELAKLGECPLDPGGYFVVKGTEKVILIQEQLS
Sbjct: 392  MPVMLRSSRCILTGKS----------DAELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 441

Query: 1912 KNRILIDTDSKGXXXXXXXXXXHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGI 2091
            KNRI+ID+DS G          HE+KSKT II+KHE  Y+KLN F++DVPIV+V+KAMG+
Sbjct: 442  KNRIIIDSDSTGSVTASVTSSTHERKSKTNIIIKHEKIYVKLNVFSDDVPIVVVMKAMGM 501

Query: 2092 ESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSK 2271
            ESDQE +QMVG DP+F GILAPS+Q CAS G+YT   ALEYLGTKV+  R    K  +SK
Sbjct: 502  ESDQEIIQMVGTDPKFAGILAPSMQECASLGVYTTHQALEYLGTKVRVNRQWGSKQTKSK 561

Query: 2272 VDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLEL 2451
            VDEARDIL NVFLA+V VH++DFRPKCIYVA+MLRRM+EA+L+ E VDD+DYVGNKRLEL
Sbjct: 562  VDEARDILLNVFLAHVAVHRYDFRPKCIYVALMLRRMLEAILDKECVDDRDYVGNKRLEL 621

Query: 2452 AGVLIALLFEDLFKRMNQEIKSHVDKTFSKQ-RSTMFDVAKAIPPHIISYGLEHAISSGN 2628
            AG L+ALLFEDLFKR   E+KS+VD+T SK  R++ +DV+K++ P +++ GLE+AISSGN
Sbjct: 622  AGQLLALLFEDLFKRSCSELKSNVDRTLSKMNRASQYDVSKSLKPDMLTSGLENAISSGN 681

Query: 2629 WNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCD 2808
            W VKRF+MD+KGVTQVVSRLSYIA+LGHMTR+ SQFEK+RK           WGMLCPCD
Sbjct: 682  WTVKRFRMDKKGVTQVVSRLSYIAALGHMTRVASQFEKSRK-----------WGMLCPCD 730

Query: 2809 TPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNG 2988
            TPEGE CGL KNLALMTH+TTD+EEAPLI LC  LGVED++LLSGEE HS+ A+L++FNG
Sbjct: 731  TPEGEGCGLTKNLALMTHITTDDEEAPLIDLCTNLGVEDINLLSGEEFHSKNAFLVMFNG 790

Query: 2989 LMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGI 3168
             +LGIHR+P++FA  +R LRRAGKIGEFVS+FVN+KQRC+Y+ASDGGRVCRP+VIAD+G+
Sbjct: 791  TILGIHRRPQQFATLMRKLRRAGKIGEFVSIFVNEKQRCIYIASDGGRVCRPVVIADHGV 850

Query: 3169 SRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPFT 3348
            SRIKEHHMKEL+DGFRTFDDFLREGLVEYLDVNEENNALIALYE EA  +T+HIEIEPFT
Sbjct: 851  SRIKEHHMKELKDGFRTFDDFLREGLVEYLDVNEENNALIALYEKEADSTTTHIEIEPFT 910

Query: 3349 ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTK 3528
            ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL R+DTLLYLLVYPQRPLLTTK
Sbjct: 911  ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLQRIDTLLYLLVYPQRPLLTTK 970

Query: 3529 TIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHP 3708
            +IELV YDKLGAGQNA+VAVMSYSGYDIEDAIVMNKASLDRGFGRCIV+KK+S +++K+ 
Sbjct: 971  SIELVNYDKLGAGQNASVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVLKKFSCLVRKYE 1030

Query: 3709 NRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPMA 3888
            NRT DRI+ P           Q LD DGIA+ GE I + DI++NK++P   +    NP+A
Sbjct: 1031 NRTMDRIVAPRQHG---HATSQLLDQDGIASVGERIYDKDIFVNKESPKDVKTTFLNPLA 1087

Query: 3889 LPDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQ 4062
            LPDS Y+ TPQ YK P  E ++VDKV+LT+NE   + IK   R TRRPELGDKFSSRHGQ
Sbjct: 1088 LPDSAYRPTPQRYKGPLGESAIVDKVLLTTNESQQMVIKCQVRHTRRPELGDKFSSRHGQ 1147

Query: 4063 KGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSA 4242
            KGVCG IV+Q+DFPF+ERG+CPDLIMNPHGFPSRMT+GKMIELLGGKAGV  GK+HYGSA
Sbjct: 1148 KGVCGTIVEQQDFPFTERGVCPDLIMNPHGFPSRMTVGKMIELLGGKAGVQSGKYHYGSA 1207

Query: 4243 FGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVD 4422
            FGEPSGHAD VE I ATLVKHGF Y GKDLIYSGITG PLQAYI+MGPIYYQKLKHMV+D
Sbjct: 1208 FGEPSGHADTVEAISATLVKHGFSYCGKDLIYSGITGCPLQAYIYMGPIYYQKLKHMVLD 1267

Query: 4423 KMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQ 4602
            KMHARA GPR++LTRQPTEGRSR+GGLRLGEMERDCL+AYG+SM+ILERLMISSDQF++Q
Sbjct: 1268 KMHARAQGPRVVLTRQPTEGRSREGGLRLGEMERDCLVAYGSSMLILERLMISSDQFQVQ 1327

Query: 4603 VCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 4779
            VCT CGLLGYY+HKLKM FCS CK+GE +A MKLPYACKLLFQELQSMNIVPRLQLAEA
Sbjct: 1328 VCTNCGLLGYYSHKLKMNFCSYCKNGENMAAMKLPYACKLLFQELQSMNIVPRLQLAEA 1386


>ref|XP_002992124.1| hypothetical protein SELMODRAFT_430375 [Selaginella moellendorffii]
            gi|300140050|gb|EFJ06779.1| hypothetical protein
            SELMODRAFT_430375 [Selaginella moellendorffii]
          Length = 1440

 Score = 1532 bits (3966), Expect = 0.0
 Identities = 756/1019 (74%), Positives = 871/1019 (85%), Gaps = 3/1019 (0%)
 Frame = +1

Query: 1732 LPIIL*S*QCVLTEKS*TDLTKLIM*ETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 1911
            +P++L S +C+LT KS          + ELAKLGECPLDPGGYFVVKGTEKVILIQEQLS
Sbjct: 453  MPVMLRSSRCILTGKS----------DAELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 502

Query: 1912 KNRILIDTDSKGXXXXXXXXXXHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGI 2091
            KNRI+ID+DS G                ++ +  H     KLN F++DVPIV+V+KAMG+
Sbjct: 503  KNRIIIDSDSTG----------------SLSLAVH--MRGKLNVFSDDVPIVVVMKAMGM 544

Query: 2092 ESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSK 2271
            ESDQE +QMVG DP+F GILAPS+Q CAS G+YT   ALEYLGTKV+  R    K  +SK
Sbjct: 545  ESDQEIIQMVGTDPKFAGILAPSMQECASLGVYTTHQALEYLGTKVRVNRQWGSKQTKSK 604

Query: 2272 VDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLEL 2451
            VDEARDIL NVFLA+V VHK+DFRPKCIYVA+MLRRM+EA+L+ E VDD+DYVGNKRLEL
Sbjct: 605  VDEARDILLNVFLAHVAVHKYDFRPKCIYVALMLRRMLEAILDKECVDDRDYVGNKRLEL 664

Query: 2452 AGVLIALLFEDLFKRMNQEIKSHVDKTFSKQ-RSTMFDVAKAIPPHIISYGLEHAISSGN 2628
            AG L+ALLFEDLFKR   E+KS+VD+T SK  R++ +DV+K++ P +++ GLE+AISSGN
Sbjct: 665  AGQLLALLFEDLFKRSCSELKSNVDRTLSKMNRASQYDVSKSLKPDMLTSGLENAISSGN 724

Query: 2629 WNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCD 2808
            W VKRF+MD+KGVTQVVSRLSYIA+LGHMTR+ SQFEK+RKVSGPR+LQ SQWGMLCPCD
Sbjct: 725  WTVKRFRMDKKGVTQVVSRLSYIAALGHMTRVASQFEKSRKVSGPRSLQPSQWGMLCPCD 784

Query: 2809 TPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNG 2988
            TPEGE CGL KNLALMTH+TTD+EEAPLI LC  LGVED++LLSGEE HS+ A+L++FNG
Sbjct: 785  TPEGEGCGLTKNLALMTHITTDDEEAPLIDLCTNLGVEDINLLSGEEFHSKNAFLVMFNG 844

Query: 2989 LMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGI 3168
             +LGIHR+P++FA  +R LRRAGKIGEFVS+FVN+KQRC+Y+ASDGGRVCRP+VIAD+G+
Sbjct: 845  TILGIHRRPQQFATLMRKLRRAGKIGEFVSIFVNEKQRCIYIASDGGRVCRPVVIADHGV 904

Query: 3169 SRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPFT 3348
            SRIKEHHMKEL+DGFRTFDDFLREGLVEYLDVNEENNALIALYE EA  +T+HIEIEPFT
Sbjct: 905  SRIKEHHMKELKDGFRTFDDFLREGLVEYLDVNEENNALIALYEKEADSTTTHIEIEPFT 964

Query: 3349 ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTK 3528
            ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL R+DTLLYLLVYPQRPLLTTK
Sbjct: 965  ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLQRIDTLLYLLVYPQRPLLTTK 1024

Query: 3529 TIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHP 3708
            +IELV YDKLGAGQNA+VAVMSYSGYDIEDAIVMNKASLDRGFGRCIV+KK+S +++K+ 
Sbjct: 1025 SIELVNYDKLGAGQNASVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVLKKFSCLVRKYE 1084

Query: 3709 NRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPMA 3888
            NRT DRI+ P           Q LD DGIA+ GE I + DI++NK++P   +    NP+A
Sbjct: 1085 NRTMDRIVAPRQHG---HATSQLLDQDGIASVGERIYDKDIFVNKESPKDVKTTFLNPLA 1141

Query: 3889 LPDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQ 4062
            LPDS Y+ TPQ YK P  E ++VDKV+LT+NE   + IK   R TRRPELGDKFSSRHGQ
Sbjct: 1142 LPDSAYRPTPQRYKGPLGESAIVDKVLLTTNESQQMVIKCQVRHTRRPELGDKFSSRHGQ 1201

Query: 4063 KGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSA 4242
            KGVCG IV+Q+DFPF+ERG+CPDLIMNPHGFPSRMT+GKMIELLGGKAGV  GK+HYGSA
Sbjct: 1202 KGVCGTIVEQQDFPFTERGVCPDLIMNPHGFPSRMTVGKMIELLGGKAGVQSGKYHYGSA 1261

Query: 4243 FGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVD 4422
            FGEPSGHAD VE I ATLVKHGF Y GKDLIYSGITG PLQAYI+MGPIYYQKLKHMV+D
Sbjct: 1262 FGEPSGHADTVEAISATLVKHGFSYCGKDLIYSGITGCPLQAYIYMGPIYYQKLKHMVLD 1321

Query: 4423 KMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQ 4602
            KMHARA GPR++LTRQPTEGRSR+GGLRLGEMERDCL+AYG+SM+ILERLMISSDQF++Q
Sbjct: 1322 KMHARAQGPRVVLTRQPTEGRSREGGLRLGEMERDCLVAYGSSMLILERLMISSDQFQVQ 1381

Query: 4603 VCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 4779
            VCT CGLLGYY+HKLKM FCS CK+GE +A MKLPYACKLLFQELQSMNIVPRLQLAEA
Sbjct: 1382 VCTNCGLLGYYSHKLKMNFCSYCKNGENMAAMKLPYACKLLFQELQSMNIVPRLQLAEA 1440


>ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
            vinifera]
          Length = 1142

 Score = 1498 bits (3877), Expect = 0.0
 Identities = 747/1022 (73%), Positives = 862/1022 (84%), Gaps = 6/1022 (0%)
 Frame = +1

Query: 1732 LPIIL*S*QCVLTEKS*TDLTKLIM*ETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 1911
            +PI+L S  CVL +K           E ELA+LGECPLDPGGYFVVKGTEKVILIQEQLS
Sbjct: 134  MPIMLRSCCCVLYKKD----------EAELARLGECPLDPGGYFVVKGTEKVILIQEQLS 183

Query: 1912 KNRILIDTDSKGXXXXXXXXXXHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGI 2091
            KNRI+IDTD KG             KSKT+I+++ E  +L+LN FT  +PI+IV+KAMG+
Sbjct: 184  KNRIIIDTDKKGNINASVTSSTESTKSKTVIVMEKEKIWLQLNQFTSKIPIMIVMKAMGM 243

Query: 2092 ESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSK 2271
            ESDQE VQMVGR+PR+  +L PS++ CAS+GIYT++ ALE+L  KVK + F N   E  K
Sbjct: 244  ESDQEVVQMVGRNPRYSALLLPSMEECASHGIYTQQQALEFLERKVKKLPFYNPSLE--K 301

Query: 2272 VDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLEL 2451
                  IL + F+ANVPV + +FRPKC+YVAVMLRRM++A+LN +A+DDKDYVGNKRLEL
Sbjct: 302  EGRGMAILRDTFIANVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYVGNKRLEL 361

Query: 2452 AGVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKA---IPPHIISYGLEHAIS 2619
            +G LI+LLFEDLFK M  E+K  +D   +K  RS+ FD ++    I    I+ GLE  +S
Sbjct: 362  SGQLISLLFEDLFKTMISEVKKTIDAILAKPSRSSRFDFSQCLRFIVRDSITVGLERTLS 421

Query: 2620 SGNWNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLC 2799
            +GNW+VKRF+M RKG++QVV+RLSYI SLGHMT+I  QFEK+RKVSGPRALQ SQWGMLC
Sbjct: 422  TGNWDVKRFRMHRKGMSQVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQWGMLC 481

Query: 2800 PCDTPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLII 2979
            PCDTPEGEACGLVKNLALMTHVTTDEEE+PLI+LC++LGVEDL LLSGEELH+  ++LII
Sbjct: 482  PCDTPEGEACGLVKNLALMTHVTTDEEESPLISLCYSLGVEDLELLSGEELHTPNSFLII 541

Query: 2980 FNGLMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIAD 3159
            FNGL+LG HR+P+RFA+ LR LRRAGKIGEFVSVFVN+KQ CVY+ASDGGRVCRP+VIAD
Sbjct: 542  FNGLILGKHRRPQRFANALRKLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPVVIAD 601

Query: 3160 NGISRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIE 3339
             G SRIKEHHMKEL DG RTFDDFLR+GL+EYLDVNEENNALIALYE++A   T+HIEIE
Sbjct: 602  KGKSRIKEHHMKELIDGVRTFDDFLRDGLIEYLDVNEENNALIALYEADAKPETTHIEIE 661

Query: 3340 PFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLL 3519
            PFTILGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMD+LLYLLVYPQRPLL
Sbjct: 662  PFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLL 721

Query: 3520 TTKTIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLK 3699
            TT+TIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIVMKK+SAV +
Sbjct: 722  TTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKFSAVNQ 781

Query: 3700 KHPNRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKN 3879
            ++ N   DRI+ P    G    R Q LD+DG+AAPGEII+ +DIYINK++P  T+  + +
Sbjct: 782  RYENNASDRIVRPL-KVGHDAERMQILDDDGLAAPGEIIKPNDIYINKESPIITKGPLIS 840

Query: 3880 PMALPDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSR 4053
            P+ LPDS YK + QT+K P  E SVVD+V L S++   L IKFL R TRRPE+GDKFSSR
Sbjct: 841  PVGLPDSAYKPSRQTFKGPEGEASVVDRVALCSDKNSNLCIKFLIRHTRRPEVGDKFSSR 900

Query: 4054 HGQKGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHY 4233
            HGQKGVCG I+QQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHY
Sbjct: 901  HGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHY 960

Query: 4234 GSAFGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHM 4413
            GSAFGEPSGHADKVETI  TLVKHGF YSGKD IYSGITG PLQAYIFMGPIYYQKLKHM
Sbjct: 961  GSAFGEPSGHADKVETISKTLVKHGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHM 1020

Query: 4414 VVDKMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQF 4593
            V+DKMHAR SGPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLM+SSD F
Sbjct: 1021 VLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPF 1080

Query: 4594 EIQVCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLA 4773
            E+QVC  CGLLGYYNHKLK+G CSTCK+G+ I+TMKLPYACKLLFQELQ+MN+VPRL+L 
Sbjct: 1081 EVQVCRVCGLLGYYNHKLKIGICSTCKNGDNISTMKLPYACKLLFQELQAMNVVPRLKLT 1140

Query: 4774 EA 4779
            EA
Sbjct: 1141 EA 1142


>ref|XP_006494574.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X3 [Citrus sinensis]
          Length = 1058

 Score = 1493 bits (3865), Expect = 0.0
 Identities = 744/1019 (73%), Positives = 854/1019 (83%), Gaps = 3/1019 (0%)
 Frame = +1

Query: 1732 LPIIL*S*QCVLTEKS*TDLTKLIM*ETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 1911
            +PI+L S +CVL  K           E ELA+LGECPLDPGGYF++KGTEKV+LIQEQLS
Sbjct: 53   IPIMLRSCRCVLYGKD----------EAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 102

Query: 1912 KNRILIDTDSKGXXXXXXXXXXHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGI 2091
            KNR++IDTD KG             KSKT+I ++    YL LN F + +PI++V+KAMGI
Sbjct: 103  KNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGI 162

Query: 2092 ESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSK 2271
            ESDQE VQMVGRDPR+  +L PS++ CA+  IYT+E ALEYL  KVK   FG+  ++R  
Sbjct: 163  ESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE- 221

Query: 2272 VDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLEL 2451
               A  IL +VFLANVPVH  +FRPKC YVAVMLRRM+EAMLN +A+DDKDYVGNKRLEL
Sbjct: 222  -GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 280

Query: 2452 AGVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIPPHIISYGLEHAISSGN 2628
            +G L++LLFEDLFK M  E++  VD   SK  RS+ FD+++ I    I+ GLE  +S+GN
Sbjct: 281  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN 340

Query: 2629 WNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCD 2808
            ++VKRFKM RKG+TQV++RLS+I +LGHMTR+  QFEK+RKVSGPRALQ SQWGMLCPCD
Sbjct: 341  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 400

Query: 2809 TPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNG 2988
            TPEGEACGLVKNLALMTHVTTDEEE PLI+LC+ LGVEDL LLSGEELH+  ++L+IFNG
Sbjct: 401  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 460

Query: 2989 LMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGI 3168
            L+LG HR+PK FA  +R LRRAGKIGEFVSVFVN+KQRCVY+ASDGGRVCRPLVIAD GI
Sbjct: 461  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 520

Query: 3169 SRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPFT 3348
            SRIKEHHMKEL DG R+FDDFLREGL+EYLDVNEENNALIALYE +AT  T+HIEIEPFT
Sbjct: 521  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 580

Query: 3349 ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTK 3528
            ILGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQLCRMD+LLYLLVYPQRPLLTT+
Sbjct: 581  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 640

Query: 3529 TIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHP 3708
            TIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIV+KKY+A+ +K+ 
Sbjct: 641  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 700

Query: 3709 NRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPMA 3888
            N T DRI+ P   +G    R Q LD+DG+AAPGEII+ +D+YINK++P +TR  + +P  
Sbjct: 701  NSTSDRILRP-DRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTG 759

Query: 3889 LPDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQ 4062
              DS Y+   QTYK P  E  VVD+V L S++   L IKFL R TRRPELGDKFSSRHGQ
Sbjct: 760  QTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQ 819

Query: 4063 KGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSA 4242
            KGVCG IVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHYGSA
Sbjct: 820  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 879

Query: 4243 FGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVD 4422
            FGEPSGHAD VE+I  TLVKHGF Y+GKD+IYSGITG PLQAYIFMGPIYYQKLKHMV+D
Sbjct: 880  FGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 939

Query: 4423 KMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQ 4602
            KMHAR SGPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLM+SSD FE+Q
Sbjct: 940  KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 999

Query: 4603 VCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 4779
            VC  CGLLGYYNHKLK G CSTCK+G+ I++MKLPYACKLL QELQSMNIVPRL+LAEA
Sbjct: 1000 VCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1058


>ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Citrus sinensis] gi|568883651|ref|XP_006494573.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Citrus sinensis]
          Length = 1149

 Score = 1493 bits (3865), Expect = 0.0
 Identities = 744/1019 (73%), Positives = 854/1019 (83%), Gaps = 3/1019 (0%)
 Frame = +1

Query: 1732 LPIIL*S*QCVLTEKS*TDLTKLIM*ETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 1911
            +PI+L S +CVL  K           E ELA+LGECPLDPGGYF++KGTEKV+LIQEQLS
Sbjct: 144  IPIMLRSCRCVLYGKD----------EAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193

Query: 1912 KNRILIDTDSKGXXXXXXXXXXHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGI 2091
            KNR++IDTD KG             KSKT+I ++    YL LN F + +PI++V+KAMGI
Sbjct: 194  KNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGI 253

Query: 2092 ESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSK 2271
            ESDQE VQMVGRDPR+  +L PS++ CA+  IYT+E ALEYL  KVK   FG+  ++R  
Sbjct: 254  ESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE- 312

Query: 2272 VDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLEL 2451
               A  IL +VFLANVPVH  +FRPKC YVAVMLRRM+EAMLN +A+DDKDYVGNKRLEL
Sbjct: 313  -GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371

Query: 2452 AGVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIPPHIISYGLEHAISSGN 2628
            +G L++LLFEDLFK M  E++  VD   SK  RS+ FD+++ I    I+ GLE  +S+GN
Sbjct: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN 431

Query: 2629 WNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCD 2808
            ++VKRFKM RKG+TQV++RLS+I +LGHMTR+  QFEK+RKVSGPRALQ SQWGMLCPCD
Sbjct: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491

Query: 2809 TPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNG 2988
            TPEGEACGLVKNLALMTHVTTDEEE PLI+LC+ LGVEDL LLSGEELH+  ++L+IFNG
Sbjct: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551

Query: 2989 LMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGI 3168
            L+LG HR+PK FA  +R LRRAGKIGEFVSVFVN+KQRCVY+ASDGGRVCRPLVIAD GI
Sbjct: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611

Query: 3169 SRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPFT 3348
            SRIKEHHMKEL DG R+FDDFLREGL+EYLDVNEENNALIALYE +AT  T+HIEIEPFT
Sbjct: 612  SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671

Query: 3349 ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTK 3528
            ILGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQLCRMD+LLYLLVYPQRPLLTT+
Sbjct: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731

Query: 3529 TIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHP 3708
            TIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIV+KKY+A+ +K+ 
Sbjct: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791

Query: 3709 NRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPMA 3888
            N T DRI+ P   +G    R Q LD+DG+AAPGEII+ +D+YINK++P +TR  + +P  
Sbjct: 792  NSTSDRILRP-DRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTG 850

Query: 3889 LPDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQ 4062
              DS Y+   QTYK P  E  VVD+V L S++   L IKFL R TRRPELGDKFSSRHGQ
Sbjct: 851  QTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQ 910

Query: 4063 KGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSA 4242
            KGVCG IVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHYGSA
Sbjct: 911  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 970

Query: 4243 FGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVD 4422
            FGEPSGHAD VE+I  TLVKHGF Y+GKD+IYSGITG PLQAYIFMGPIYYQKLKHMV+D
Sbjct: 971  FGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1030

Query: 4423 KMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQ 4602
            KMHAR SGPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLM+SSD FE+Q
Sbjct: 1031 KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1090

Query: 4603 VCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 4779
            VC  CGLLGYYNHKLK G CSTCK+G+ I++MKLPYACKLL QELQSMNIVPRL+LAEA
Sbjct: 1091 VCRVCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1149


>ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citrus clementina]
            gi|557534507|gb|ESR45625.1| hypothetical protein
            CICLE_v10000078mg [Citrus clementina]
          Length = 1149

 Score = 1492 bits (3863), Expect = 0.0
 Identities = 743/1019 (72%), Positives = 853/1019 (83%), Gaps = 3/1019 (0%)
 Frame = +1

Query: 1732 LPIIL*S*QCVLTEKS*TDLTKLIM*ETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 1911
            +PI+L S +CVL  K           E ELA+LGECPLDPGGYF++KGTEKV+LIQEQLS
Sbjct: 144  IPIMLRSCRCVLYGKD----------EAELARLGECPLDPGGYFIIKGTEKVLLIQEQLS 193

Query: 1912 KNRILIDTDSKGXXXXXXXXXXHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGI 2091
            KNR++IDTD KG             KSKT+I ++    YL LN F + +PI++V+KAMG+
Sbjct: 194  KNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGM 253

Query: 2092 ESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSK 2271
            ESDQE VQMVGRDPR+  +L PS++ CA+  IYT+E ALEYL  KVK   FG+  ++R  
Sbjct: 254  ESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDRE- 312

Query: 2272 VDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLEL 2451
               A  IL +VFLANVPVH  +FRPKC YVAVMLRRM+EAMLN +A+DDKDYVGNKRLEL
Sbjct: 313  -GRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371

Query: 2452 AGVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIPPHIISYGLEHAISSGN 2628
            +G L++LLFEDLFK M  E++  VD   SK  RS+ FD+++ I    I+ GLE  +S+GN
Sbjct: 372  SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGN 431

Query: 2629 WNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCD 2808
            ++VKRFKM RKG+TQV++RLS+I +LGHMTR+  QFEK+RKVSGPRALQ SQWGMLCPCD
Sbjct: 432  FDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491

Query: 2809 TPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNG 2988
            TPEGEACGLVKNLALMTHVTTDEEE PLI+LC+ LGVEDL LLSGEELH+  ++L+IFNG
Sbjct: 492  TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551

Query: 2989 LMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGI 3168
            L+LG HR+PK FA  +R LRRAGKIGEFVSVFVN+KQRCVY+ASDGGRVCRPLVIAD GI
Sbjct: 552  LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611

Query: 3169 SRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPFT 3348
            SRIKEHHMKEL DG R+FDDFLREGL+EYLDVNEENNALIALYE +AT  T+HIEIEPFT
Sbjct: 612  SRIKEHHMKELSDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671

Query: 3349 ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTK 3528
            ILGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQLCRMD+LLYLLVYPQRPLLTT+
Sbjct: 672  ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731

Query: 3529 TIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHP 3708
            TIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIV+KKY+A+ +K+ 
Sbjct: 732  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791

Query: 3709 NRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPMA 3888
            N T DRI+ P   +G    R Q LD+DG+AAPGEII+ +D+YINK++P +TR  + +P  
Sbjct: 792  NSTSDRILRP-DRTGPGSERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTG 850

Query: 3889 LPDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQ 4062
              DS Y+   QTYK P  E  VVD+V L S++   L IKFL R TRRPELGDKFSSRHGQ
Sbjct: 851  QTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQ 910

Query: 4063 KGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSA 4242
            KGVCG IVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHYGSA
Sbjct: 911  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 970

Query: 4243 FGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVD 4422
            FGEPSGHAD VE+I  TLVKHGF Y+GKD+IYSGITG PLQAYIFMGPIYYQKLKHMV+D
Sbjct: 971  FGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1030

Query: 4423 KMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQ 4602
            KMHAR SGPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLM+SSD FE+Q
Sbjct: 1031 KMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1090

Query: 4603 VCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 4779
            VC  CGLLGYYNHKLK G CSTCK+G  I++MKLPYACKLL QELQSMNIVPRL+LAEA
Sbjct: 1091 VCRVCGLLGYYNHKLKAGICSTCKNGNNISSMKLPYACKLLIQELQSMNIVPRLKLAEA 1149


>ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum
            lycopersicum]
          Length = 1183

 Score = 1482 bits (3837), Expect = 0.0
 Identities = 739/1019 (72%), Positives = 843/1019 (82%), Gaps = 3/1019 (0%)
 Frame = +1

Query: 1732 LPIIL*S*QCVLTEKS*TDLTKLIM*ETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 1911
            +PI+L S  CVL  K           E ELA+LGECPLDPGGYFV+KGTEKVILIQEQLS
Sbjct: 176  MPIMLRSSCCVLYGKD----------EDELARLGECPLDPGGYFVIKGTEKVILIQEQLS 225

Query: 1912 KNRILIDTDSKGXXXXXXXXXXHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGI 2091
            KNRI+IDTD KG           + KSKTII ++ E  YL+LN F   VPI++V+KAMG+
Sbjct: 226  KNRIIIDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMFKTKVPIMVVMKAMGM 285

Query: 2092 ESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSK 2271
            ESDQE VQM+GRDPRF  +L PS++ CA   +YT++ ALE+L +               K
Sbjct: 286  ESDQEVVQMIGRDPRFSALLLPSIEECADLKLYTQQQALEFLESDKMLKMPSYSTGPIEK 345

Query: 2272 VDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLEL 2451
               A  IL ++FLANVPVH+ +FR KCIYVAVM+RRM+EA+LN +A+DDKDYVGNKRLEL
Sbjct: 346  GARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLEL 405

Query: 2452 AGVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIPPHIISYGLEHAISSGN 2628
            +G L++LLFEDLFK MN E +  +D   ++  RS+  D+++ I    I+ GLE  +S+GN
Sbjct: 406  SGQLLSLLFEDLFKTMNDEARRTIDTLLARPSRSSRLDISQYIIKDSITMGLERTLSTGN 465

Query: 2629 WNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCD 2808
            W+VKRF+M RKG+TQVV+RLSYI SLGHMT+I  QFEK+RKVSGPRALQ SQ+GMLCPCD
Sbjct: 466  WDVKRFRMHRKGMTQVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQFGMLCPCD 525

Query: 2809 TPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNG 2988
            TPEGEACGLVKNLALMTHVTTDE+E P+++LC+ LGVEDL  LS EELH   +YLI  NG
Sbjct: 526  TPEGEACGLVKNLALMTHVTTDEDERPIMSLCYCLGVEDLEQLSPEELHMPTSYLITLNG 585

Query: 2989 LMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGI 3168
            L+LG H+ P+RFA+ +R LRRAGK+GEFVS+FVN+KQRCVY+ASDGGRVCRPLVIAD G+
Sbjct: 586  LILGKHKSPQRFANAMRRLRRAGKVGEFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGV 645

Query: 3169 SRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPFT 3348
            SRIKEHHM+ELRDG R FD FL++GL+EYLDVNEENN LIALYE EAT  T+HIEIEPFT
Sbjct: 646  SRIKEHHMRELRDGLRDFDSFLKDGLIEYLDVNEENNTLIALYEKEATPETTHIEIEPFT 705

Query: 3349 ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTK 3528
            ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD LLYLLVYPQRPLLTT+
Sbjct: 706  ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDGLLYLLVYPQRPLLTTR 765

Query: 3529 TIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHP 3708
            TIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIVMKKYSA+ +K+ 
Sbjct: 766  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKYSAICQKYE 825

Query: 3709 NRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPMA 3888
            N T DRII P       D R Q LD+DG+AAPGE IRNHDIYINK++PT TR  V +PM 
Sbjct: 826  NGTSDRIIKPQRQGPEAD-RMQILDDDGMAAPGETIRNHDIYINKESPTVTRTPVTSPMG 884

Query: 3889 LPDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQ 4062
            LPDS YK + QTYK P  E +VVD+V L S+  + L+IKF+ R TRRPELGDKFSSRHGQ
Sbjct: 885  LPDSAYKSSKQTYKGPEGETAVVDRVALYSDRNNNLSIKFMIRHTRRPELGDKFSSRHGQ 944

Query: 4063 KGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSA 4242
            KGVCG IVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLG KAGV CG+FHYGSA
Sbjct: 945  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSA 1004

Query: 4243 FGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVD 4422
            FGEPSGHAD V+ I  TLVKHGF Y+GKD IYSGITG PLQAYIFMGPIYYQKLKHMVVD
Sbjct: 1005 FGEPSGHADTVDAISETLVKHGFSYNGKDFIYSGITGMPLQAYIFMGPIYYQKLKHMVVD 1064

Query: 4423 KMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQ 4602
            KMHAR SGPR+M+TRQPTEGRSR+GGLR+GEMERDCLIAYGASM+I ERLMISSD FE+Q
Sbjct: 1065 KMHARGSGPRVMMTRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQ 1124

Query: 4603 VCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 4779
            VC KCGLLGYYN+KLK G CS CK+GE I+TMKLPYACKLLFQELQSMNIVPRL+LAEA
Sbjct: 1125 VCRKCGLLGYYNYKLKTGICSMCKNGENISTMKLPYACKLLFQELQSMNIVPRLKLAEA 1183


>ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Solanum tuberosum] gi|565393087|ref|XP_006362215.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Solanum tuberosum]
          Length = 1153

 Score = 1478 bits (3826), Expect = 0.0
 Identities = 736/1019 (72%), Positives = 843/1019 (82%), Gaps = 3/1019 (0%)
 Frame = +1

Query: 1732 LPIIL*S*QCVLTEKS*TDLTKLIM*ETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 1911
            +PI+L S  CVL  K           E ELA+LGECPLDPGGYFV+KGTEKVILIQEQLS
Sbjct: 146  MPIMLRSSCCVLYGKD----------EDELARLGECPLDPGGYFVIKGTEKVILIQEQLS 195

Query: 1912 KNRILIDTDSKGXXXXXXXXXXHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGI 2091
            KNRI+IDTD KG           + KSKTII ++ E  YL+LN F   VPI++V+KAMG+
Sbjct: 196  KNRIIIDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMFKTKVPIMVVMKAMGM 255

Query: 2092 ESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSK 2271
            ESDQE VQM+GRDPRF  +L PS++ CA   +YT+  ALE+L +               K
Sbjct: 256  ESDQEVVQMIGRDPRFSALLLPSIEECADLKLYTQHQALEFLESDKMLKMPSYSTGPVEK 315

Query: 2272 VDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLEL 2451
               A  IL ++FLANVPVH+ +FR KCIYVAVM+RRM+EA+LN +A+DDKDYVGNKRLEL
Sbjct: 316  GARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLEL 375

Query: 2452 AGVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIPPHIISYGLEHAISSGN 2628
            +G L++LLFEDLFK MN E +  +D   ++  RS+  D+++ I    I+ GLE  +S+GN
Sbjct: 376  SGQLLSLLFEDLFKTMNDEARRTIDTLLARPSRSSRLDISQYIVKDSITMGLERTLSTGN 435

Query: 2629 WNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCD 2808
            W+VKRF+M RKG+TQVV+RLSYI SLGHMT+I  QFEK+RKVSGPRALQ SQ+GMLCPCD
Sbjct: 436  WDVKRFRMHRKGMTQVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQFGMLCPCD 495

Query: 2809 TPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNG 2988
            TPEGEACGLVKNLALMTHVTTDE+E P+++LC+ LGVEDL  LS EELH   +YLI  NG
Sbjct: 496  TPEGEACGLVKNLALMTHVTTDEDERPIMSLCYCLGVEDLEQLSPEELHMPTSYLITLNG 555

Query: 2989 LMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGI 3168
            L+LG H+ P+RFA+ +R LRRAGKIGEFVS+FVN+KQRCVY+ASDGGRVCRPLVIAD G+
Sbjct: 556  LILGKHKSPQRFANAMRRLRRAGKIGEFVSIFVNEKQRCVYIASDGGRVCRPLVIADKGV 615

Query: 3169 SRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPFT 3348
            SRIKEHHM+ELRDG R FD FL++GL+EYLDVNEENN LIALYE EAT  T+HIEIEPFT
Sbjct: 616  SRIKEHHMRELRDGVRDFDSFLKDGLIEYLDVNEENNTLIALYEKEATPETTHIEIEPFT 675

Query: 3349 ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTK 3528
            ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD LLYLLVYPQRPLLTT+
Sbjct: 676  ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDGLLYLLVYPQRPLLTTR 735

Query: 3529 TIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHP 3708
            TIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIVMKKYSA+ +K+ 
Sbjct: 736  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKYSAICQKYE 795

Query: 3709 NRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPMA 3888
            N T DRII P       D + Q LD+DG+AAPGE IRNHDIYINK++PT TR  + +PM 
Sbjct: 796  NGTSDRIIKPQRQGFEAD-KMQILDDDGMAAPGETIRNHDIYINKESPTVTRTPITSPMG 854

Query: 3889 LPDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQ 4062
            LPDS YK + QTYK P  E +VVD+V L S+  + L+IKF+ R TRRPE+GDKFSSRHGQ
Sbjct: 855  LPDSAYKTSRQTYKGPEGETAVVDRVALYSDRNNNLSIKFMIRHTRRPEIGDKFSSRHGQ 914

Query: 4063 KGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSA 4242
            KGVCG IVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLG KAGV CG+FHYGSA
Sbjct: 915  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSA 974

Query: 4243 FGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVD 4422
            FGEPSGHAD V++I  TLVKHGF Y+GKD IYSGITG PLQAYIFMGPIYYQKLKHMV+D
Sbjct: 975  FGEPSGHADTVDSISETLVKHGFSYNGKDFIYSGITGMPLQAYIFMGPIYYQKLKHMVLD 1034

Query: 4423 KMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQ 4602
            KMHAR SGPR+M+TRQPTEGRSR+GGLR+GEMERDCLIAYGASM+I ERLMISSD FE+Q
Sbjct: 1035 KMHARGSGPRVMMTRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQ 1094

Query: 4603 VCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 4779
            VC KCGLLGYYN+KLK G CS CK+GE I+TMKLPYACKLLFQELQSMNIVPRL+LAEA
Sbjct: 1095 VCRKCGLLGYYNYKLKTGICSMCKNGENISTMKLPYACKLLFQELQSMNIVPRLKLAEA 1153


>gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 1158

 Score = 1470 bits (3806), Expect = 0.0
 Identities = 733/1020 (71%), Positives = 845/1020 (82%), Gaps = 4/1020 (0%)
 Frame = +1

Query: 1732 LPIIL*S*QCVLTEKS*TDLTKLIM*ETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 1911
            +PI+L S  CVL  K           E ELA+LGECPLDPGGYFV+KG EKVILIQEQLS
Sbjct: 152  MPIMLRSCCCVLYGKD----------EAELARLGECPLDPGGYFVIKGAEKVILIQEQLS 201

Query: 1912 KNRILIDTDSKGXXXXXXXXXXHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGI 2091
            KNRI+ID D KG             KSKT+I ++ E  YL LN F + +PI++V+KAMG+
Sbjct: 202  KNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGM 261

Query: 2092 ESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSK 2271
            ESDQE VQMVGRDP +  +L PS++ CA  GIYT+E ALEYL TKVK + +    SE  K
Sbjct: 262  ESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASE--K 319

Query: 2272 VDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLEL 2451
               A  IL +VFLANVPV   +FRPKC+YVAVMLRRM+EA+LN +A+DDKDYVGNKRLEL
Sbjct: 320  EGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLEL 379

Query: 2452 AGVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIPPH-IISYGLEHAISSG 2625
            +G LI+LLFEDLFK    E++  +D   SK  RS+  D ++ +     I++GLE  +S+G
Sbjct: 380  SGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTG 439

Query: 2626 NWNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPC 2805
            N+++KRFKM RKG+TQV++RLS+I +LG+MT++  QFEK+RKVSGPRALQ SQWGMLCPC
Sbjct: 440  NFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPC 499

Query: 2806 DTPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFN 2985
            DTPEGEACGLVKNLALMTHVTTDE+E PLI+LC+ LGVEDL LLSGEELH+  ++L+I N
Sbjct: 500  DTPEGEACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFLVILN 559

Query: 2986 GLMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNG 3165
            GL+LG HR+P+ FA  +R LRRAGK+GEFVSVFVN+KQRCVY+ASDGGRVCRPLVIAD G
Sbjct: 560  GLILGKHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG 619

Query: 3166 ISRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPF 3345
            +SRIKEHHMKEL DG RTFDDFLR+GL+EYLDVNEENNALIALYE EAT  T+HIEIEPF
Sbjct: 620  VSRIKEHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPF 679

Query: 3346 TILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT 3525
            TILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT
Sbjct: 680  TILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT 739

Query: 3526 KTIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKH 3705
            +TIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIVMK+YSAV +K+
Sbjct: 740  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKY 799

Query: 3706 PNRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPM 3885
                 DRI+ P   +G    R Q LD+DGIA PGEIIR +DIYINK++   TR    +  
Sbjct: 800  ETGASDRILRP-QRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSE 858

Query: 3886 ALPDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHG 4059
            +LPDS Y+   QTYK P  E  VVD+V L ++    L+IKFL R TRRPE+GDKFSSRHG
Sbjct: 859  SLPDSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHG 918

Query: 4060 QKGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGS 4239
            QKGVCG I+QQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHYGS
Sbjct: 919  QKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 978

Query: 4240 AFGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVV 4419
            AFGEPSGHAD+VE I  TL+KHGF Y+GKD IYSGITG PLQAYIFMGPIYYQKLKHMV+
Sbjct: 979  AFGEPSGHADRVEAISETLIKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1038

Query: 4420 DKMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEI 4599
            DKMHAR +GPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLMISSD FE+
Sbjct: 1039 DKMHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEV 1098

Query: 4600 QVCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 4779
            QVC KCGLLGYY+HKLK G CS+CK+G+ ++TMKLPYACKLL QELQSMNIVPRL+L+EA
Sbjct: 1099 QVCRKCGLLGYYSHKLKTGICSSCKNGDNVSTMKLPYACKLLIQELQSMNIVPRLKLSEA 1158


>ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cucumis
            sativus]
          Length = 1158

 Score = 1467 bits (3797), Expect = 0.0
 Identities = 734/1021 (71%), Positives = 854/1021 (83%), Gaps = 5/1021 (0%)
 Frame = +1

Query: 1732 LPIIL*S*QCVLTEKS*TDLTKLIM*ETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 1911
            +PI+L S  CVL  K           E ELA+LGECPLDPGGYF++KGTEKV+LIQEQLS
Sbjct: 154  MPIMLRSRCCVLHGKD----------EAELARLGECPLDPGGYFIIKGTEKVVLIQEQLS 203

Query: 1912 KNRILIDTDSKGXXXXXXXXXXHEKKSKTIIIVKHEIFYLKLNTFTED-VPIVIVVKAMG 2088
            KNRI+IDTD KG             KSKT+I +++E  YL+LN FT   +PI++V+KAMG
Sbjct: 204  KNRIIIDTDKKGNINASVTSSTEATKSKTVIKMENEKIYLQLNIFTTPKIPIMVVLKAMG 263

Query: 2089 IESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERS 2268
            +ES QE VQMVGRDPR+G +L PS++ CA   IYT+E ALEYL TKVK  +F +   E  
Sbjct: 264  MESIQEVVQMVGRDPRYGALLLPSIEECAKEKIYTQEQALEYLETKVKKFQFASAPPE-- 321

Query: 2269 KVDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLE 2448
            K   A  IL +VFLANVPV+K +F PKCIYVAVM+RRM++A+L+ +A+DDKDYVGNKRLE
Sbjct: 322  KEGRALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMMDAILSKDAMDDKDYVGNKRLE 381

Query: 2449 LAGVLIALLFEDLFKRMNQEIKSHVDKTFSKQ-RSTMFDVAKAIPPHIISYGLEHAISSG 2625
            L+G LI+LLFEDLFK M  E+K  +DK   K  RS+ FD ++ +  +IIS+GLE  +S+G
Sbjct: 382  LSGQLISLLFEDLFKTMVSEVKKTIDKLLGKHSRSSRFDFSQHLNSNIISFGLERTLSTG 441

Query: 2626 NWNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPC 2805
            NW+VKRF+M RKG++QV++RLS+I+++GH+TR+  QFEK+RKVSGPRALQ SQWGMLCPC
Sbjct: 442  NWDVKRFRMHRKGMSQVLARLSFISTMGHVTRVSPQFEKSRKVSGPRALQPSQWGMLCPC 501

Query: 2806 DTPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFN 2985
            DTPEGEACGLVKNLALMTHVTTD+EE PLI+LC+ LGVEDL LLS EELH+  ++L+IFN
Sbjct: 502  DTPEGEACGLVKNLALMTHVTTDQEEGPLISLCYCLGVEDLELLSAEELHTPNSFLVIFN 561

Query: 2986 GLMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNG 3165
            G +LG HR+P+ FA  +R+LRRAGKIGEFVSVFVN+KQ CVY+ASDGGRVCRPLVIAD G
Sbjct: 562  GRILGKHRRPQYFATGMRMLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKG 621

Query: 3166 ISRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPF 3345
            +SRIKE+HMKEL DG RTFDDFLR+GL+EYLDVNEENNALIALYE EAT  T+HIEIEPF
Sbjct: 622  VSRIKEYHMKELSDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPF 681

Query: 3346 TILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT 3525
            TILGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL RMDTLLYLLVYPQRPLLTT
Sbjct: 682  TILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLVYPQRPLLTT 741

Query: 3526 KTIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKH 3705
            KTIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIV KKYS+V +K+
Sbjct: 742  KTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVFKKYSSVNQKY 801

Query: 3706 PNRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPM 3885
             N T DRI+ P  +        Q LD+DG+AAPGEIIR +DIY+NKQ+P   +    +P+
Sbjct: 802  ENNTADRIVRPNRNED-FTGNMQILDDDGLAAPGEIIRPNDIYVNKQSPIIMK---GSPL 857

Query: 3886 -ALPDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRH 4056
              +PD+ Y+   Q +K    EP+VVD+V L++++ D L IKFL RQTRRPELGDKFSSRH
Sbjct: 858  PGIPDNAYRPCRQIFKGSEGEPTVVDRVALSTDKNDCLCIKFLIRQTRRPELGDKFSSRH 917

Query: 4057 GQKGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYG 4236
            GQKGVCG IVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHYG
Sbjct: 918  GQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYG 977

Query: 4237 SAFGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMV 4416
            SAFGEPSGHADKV+ I  TL+K GF Y+GKD +YSGITG PLQAYIFMGPIYYQKLKHMV
Sbjct: 978  SAFGEPSGHADKVDAISETLIKRGFSYNGKDFLYSGITGCPLQAYIFMGPIYYQKLKHMV 1037

Query: 4417 VDKMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFE 4596
            +DKMHAR SGPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLMISSD FE
Sbjct: 1038 LDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFE 1097

Query: 4597 IQVCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAE 4776
            +QVC  CGLLGYYNHKLK G CS+CK+G+ I+TMKLPYACKLL QELQSMNIVPRL+LAE
Sbjct: 1098 VQVCRVCGLLGYYNHKLKTGICSSCKNGDNISTMKLPYACKLLIQELQSMNIVPRLKLAE 1157

Query: 4777 A 4779
            A
Sbjct: 1158 A 1158


>gb|EOY19615.1| DNA-directed RNA polymerase isoform 7 [Theobroma cacao]
          Length = 1082

 Score = 1458 bits (3774), Expect = 0.0
 Identities = 733/1043 (70%), Positives = 845/1043 (81%), Gaps = 27/1043 (2%)
 Frame = +1

Query: 1732 LPIIL*S*QCVLTEKS*TDLTKLIM*ETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 1911
            +PI+L S  CVL  K           E ELA+LGECPLDPGGYFV+KG EKVILIQEQLS
Sbjct: 53   MPIMLRSCCCVLYGKD----------EAELARLGECPLDPGGYFVIKGAEKVILIQEQLS 102

Query: 1912 KNRILIDTDSKGXXXXXXXXXXHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGI 2091
            KNRI+ID D KG             KSKT+I ++ E  YL LN F + +PI++V+KAMG+
Sbjct: 103  KNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGM 162

Query: 2092 ESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSK 2271
            ESDQE VQMVGRDP +  +L PS++ CA  GIYT+E ALEYL TKVK + +    SE  K
Sbjct: 163  ESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASE--K 220

Query: 2272 VDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLEL 2451
               A  IL +VFLANVPV   +FRPKC+YVAVMLRRM+EA+LN +A+DDKDYVGNKRLEL
Sbjct: 221  EGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLEL 280

Query: 2452 AGVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIPPH-IISYGLEHAISSG 2625
            +G LI+LLFEDLFK    E++  +D   SK  RS+  D ++ +     I++GLE  +S+G
Sbjct: 281  SGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTG 340

Query: 2626 NWNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPC 2805
            N+++KRFKM RKG+TQV++RLS+I +LG+MT++  QFEK+RKVSGPRALQ SQWGMLCPC
Sbjct: 341  NFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPC 400

Query: 2806 DTPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFN 2985
            DTPEGEACGLVKNLALMTHVTTDE+E PLI+LC+ LGVEDL LLSGEELH+  ++L+I N
Sbjct: 401  DTPEGEACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFLVILN 460

Query: 2986 GLMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNG 3165
            GL+LG HR+P+ FA  +R LRRAGK+GEFVSVFVN+KQRCVY+ASDGGRVCRPLVIAD G
Sbjct: 461  GLILGKHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG 520

Query: 3166 ISRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPF 3345
            +SRIKEHHMKEL DG RTFDDFLR+GL+EYLDVNEENNALIALYE EAT  T+HIEIEPF
Sbjct: 521  VSRIKEHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPF 580

Query: 3346 TILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT 3525
            TILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT
Sbjct: 581  TILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT 640

Query: 3526 KTIELVK-----------------------YDKLGAGQNATVAVMSYSGYDIEDAIVMNK 3636
            +TIELV                        YDKLGAGQNATVAVMSYSGYDIEDAIVMNK
Sbjct: 641  RTIELVSGLYVVDYSTPFCPVNCLLCFQVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 700

Query: 3637 ASLDRGFGRCIVMKKYSAVLKKHPNRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEII 3816
            +SLDRGFGRCIVMK+YSAV +K+     DRI+ P   +G    R Q LD+DGIA PGEII
Sbjct: 701  SSLDRGFGRCIVMKRYSAVNQKYETGASDRILRP-QRTGPGSERMQILDDDGIATPGEII 759

Query: 3817 RNHDIYINKQTPTKTREEVKNPMALPDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDAL 3990
            R +DIYINK++   TR    +  +LPDS Y+   QTYK P  E  VVD+V L ++    L
Sbjct: 760  RPNDIYINKESSIHTRGSRVSSESLPDSAYRPARQTYKGPEGESCVVDRVALCTDRNSNL 819

Query: 3991 NIKFLFRQTRRPELGDKFSSRHGQKGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMT 4170
            +IKFL R TRRPE+GDKFSSRHGQKGVCG I+QQEDFPFSERGICPDLIMNPHGFPSRMT
Sbjct: 820  SIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMT 879

Query: 4171 IGKMIELLGGKAGVCCGKFHYGSAFGEPSGHADKVETICATLVKHGFCYSGKDLIYSGIT 4350
            +GKMIELLGGKAGV CG+FHYGSAFGEPSGHAD+VE I  TL+KHGF Y+GKD IYSGIT
Sbjct: 880  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADRVEAISETLIKHGFSYNGKDFIYSGIT 939

Query: 4351 GYPLQAYIFMGPIYYQKLKHMVVDKMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDC 4530
            G PLQAYIFMGPIYYQKLKHMV+DKMHAR +GPR+MLTRQPTEGR+R+GGLR+GEMERDC
Sbjct: 940  GCPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDC 999

Query: 4531 LIAYGASMMILERLMISSDQFEIQVCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPY 4710
            LIAYGASM+I ERLMISSD FE+QVC KCGLLGYY+HKLK G CS+CK+G+ ++TMKLPY
Sbjct: 1000 LIAYGASMLIFERLMISSDPFEVQVCRKCGLLGYYSHKLKTGICSSCKNGDNVSTMKLPY 1059

Query: 4711 ACKLLFQELQSMNIVPRLQLAEA 4779
            ACKLL QELQSMNIVPRL+L+EA
Sbjct: 1060 ACKLLIQELQSMNIVPRLKLSEA 1082


>gb|EOY19611.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
          Length = 1153

 Score = 1456 bits (3769), Expect = 0.0
 Identities = 728/1020 (71%), Positives = 840/1020 (82%), Gaps = 4/1020 (0%)
 Frame = +1

Query: 1732 LPIIL*S*QCVLTEKS*TDLTKLIM*ETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 1911
            +PI+L S  CVL  K           E ELA+LGECPLDPGGYFV+KG EK     EQLS
Sbjct: 152  MPIMLRSCCCVLYGKD----------EAELARLGECPLDPGGYFVIKGAEK-----EQLS 196

Query: 1912 KNRILIDTDSKGXXXXXXXXXXHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGI 2091
            KNRI+ID D KG             KSKT+I ++ E  YL LN F + +PI++V+KAMG+
Sbjct: 197  KNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGM 256

Query: 2092 ESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSK 2271
            ESDQE VQMVGRDP +  +L PS++ CA  GIYT+E ALEYL TKVK + +    SE  K
Sbjct: 257  ESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASE--K 314

Query: 2272 VDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLEL 2451
               A  IL +VFLANVPV   +FRPKC+YVAVMLRRM+EA+LN +A+DDKDYVGNKRLEL
Sbjct: 315  EGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLEL 374

Query: 2452 AGVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIPPH-IISYGLEHAISSG 2625
            +G LI+LLFEDLFK    E++  +D   SK  RS+  D ++ +     I++GLE  +S+G
Sbjct: 375  SGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTG 434

Query: 2626 NWNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPC 2805
            N+++KRFKM RKG+TQV++RLS+I +LG+MT++  QFEK+RKVSGPRALQ SQWGMLCPC
Sbjct: 435  NFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPC 494

Query: 2806 DTPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFN 2985
            DTPEGEACGLVKNLALMTHVTTDE+E PLI+LC+ LGVEDL LLSGEELH+  ++L+I N
Sbjct: 495  DTPEGEACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFLVILN 554

Query: 2986 GLMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNG 3165
            GL+LG HR+P+ FA  +R LRRAGK+GEFVSVFVN+KQRCVY+ASDGGRVCRPLVIAD G
Sbjct: 555  GLILGKHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG 614

Query: 3166 ISRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPF 3345
            +SRIKEHHMKEL DG RTFDDFLR+GL+EYLDVNEENNALIALYE EAT  T+HIEIEPF
Sbjct: 615  VSRIKEHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPF 674

Query: 3346 TILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT 3525
            TILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT
Sbjct: 675  TILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT 734

Query: 3526 KTIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKH 3705
            +TIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIVMK+YSAV +K+
Sbjct: 735  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKY 794

Query: 3706 PNRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPM 3885
                 DRI+ P   +G    R Q LD+DGIA PGEIIR +DIYINK++   TR    +  
Sbjct: 795  ETGASDRILRP-QRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSE 853

Query: 3886 ALPDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHG 4059
            +LPDS Y+   QTYK P  E  VVD+V L ++    L+IKFL R TRRPE+GDKFSSRHG
Sbjct: 854  SLPDSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHG 913

Query: 4060 QKGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGS 4239
            QKGVCG I+QQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHYGS
Sbjct: 914  QKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 973

Query: 4240 AFGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVV 4419
            AFGEPSGHAD+VE I  TL+KHGF Y+GKD IYSGITG PLQAYIFMGPIYYQKLKHMV+
Sbjct: 974  AFGEPSGHADRVEAISETLIKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1033

Query: 4420 DKMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEI 4599
            DKMHAR +GPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLMISSD FE+
Sbjct: 1034 DKMHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEV 1093

Query: 4600 QVCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 4779
            QVC KCGLLGYY+HKLK G CS+CK+G+ ++TMKLPYACKLL QELQSMNIVPRL+L+EA
Sbjct: 1094 QVCRKCGLLGYYSHKLKTGICSSCKNGDNVSTMKLPYACKLLIQELQSMNIVPRLKLSEA 1153


>ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
            gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase
            III subunit, putative [Ricinus communis]
          Length = 1139

 Score = 1453 bits (3761), Expect = 0.0
 Identities = 731/1019 (71%), Positives = 838/1019 (82%), Gaps = 3/1019 (0%)
 Frame = +1

Query: 1732 LPIIL*S*QCVLTEKS*TDLTKLIM*ETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 1911
            +PI+L S  CVL  K           E ELA+LGECPLDPGGYFV+KGTEKVILIQEQLS
Sbjct: 150  MPIMLRSRSCVLYGKD----------EAELARLGECPLDPGGYFVIKGTEKVILIQEQLS 199

Query: 1912 KNRILIDTDSKGXXXXXXXXXXHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGI 2091
            KNRI+IDTD KG             KSKTII ++ E  YL LN F + +PI++V+KAMG+
Sbjct: 200  KNRIIIDTDKKGNINASVTSSTEATKSKTIIQMEKEKMYLCLNQFVKKIPIMVVIKAMGM 259

Query: 2092 ESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSK 2271
            ESDQE VQMVGRDPR+  +L PS++ CA   IYT++ ALEYL                 K
Sbjct: 260  ESDQEVVQMVGRDPRYSALLLPSIEECAGLSIYTQQKALEYLD---------------GK 304

Query: 2272 VDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLEL 2451
             + A  IL +VFLANVPVHK +FRPKC+YVAVMLRRM+EAMLN +A+DDKDYVGNKRLEL
Sbjct: 305  ENRALTILRDVFLANVPVHKNNFRPKCLYVAVMLRRMMEAMLNKDAMDDKDYVGNKRLEL 364

Query: 2452 AGVLIALLFEDLFKRMNQEIKSHVDKTFSKQ-RSTMFDVAKAIPPHIISYGLEHAISSGN 2628
            +G LI+LLFEDLFK M  E++  +D   +KQ RS+ FD+A+ I    I+ GLE  +S+GN
Sbjct: 365  SGQLISLLFEDLFKTMITEVQRTIDTVLTKQNRSSRFDLAQYIVRDNITNGLERTLSTGN 424

Query: 2629 WNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCD 2808
            ++VKRFKM RKG+TQV+ RLSYIASLG MTR+  QFEK+RKVSGPRALQ SQWGMLCPCD
Sbjct: 425  FDVKRFKMHRKGMTQVLVRLSYIASLGMMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 484

Query: 2809 TPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNG 2988
            TPEGEACGLVKNLALMTHVTTD+EE PLI+LC+ LGVEDL LLSGEELH+  ++L+IFNG
Sbjct: 485  TPEGEACGLVKNLALMTHVTTDDEEGPLISLCYCLGVEDLELLSGEELHTPNSFLVIFNG 544

Query: 2989 LMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGI 3168
            L+LG HR+P+ F + +R LRRAGKIGEFVSVFVN+KQR VY+ASDGGRVCRPLVIAD G+
Sbjct: 545  LILGKHRRPQYFVNSMRKLRRAGKIGEFVSVFVNEKQRAVYLASDGGRVCRPLVIADRGV 604

Query: 3169 SRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPFT 3348
            SRIKEHHMKELRDG RTFDDFLR+GL+EYLDVNEENNAL+ALYE EAT  T+HIEIEPFT
Sbjct: 605  SRIKEHHMKELRDGVRTFDDFLRDGLIEYLDVNEENNALVALYEGEATPETTHIEIEPFT 664

Query: 3349 ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTK 3528
            ILGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD+LLYLLVYPQRPLLTT+
Sbjct: 665  ILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRMDSLLYLLVYPQRPLLTTR 724

Query: 3529 TIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHP 3708
            TIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKY A+ +K+ 
Sbjct: 725  TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYPAIRQKYE 784

Query: 3709 NRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPMA 3888
            N   DRI+ P     R   R + LD DG+AAPGEII+  DIY+ K+ P  T   VK+  A
Sbjct: 785  NGASDRILRP----DRTVERERVLDYDGLAAPGEIIKPSDIYVKKECPIDTMGPVKSSAA 840

Query: 3889 LPDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQ 4062
            L + +Y+ +P +YK P  E  V+D+V L+S+  + L IK + R TRRPE+GDKFSSRHGQ
Sbjct: 841  LENIKYRPSPLSYKGPEGESPVIDRVALSSDRNNNLCIKVMIRHTRRPEVGDKFSSRHGQ 900

Query: 4063 KGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSA 4242
            KGVCG I+QQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHYGSA
Sbjct: 901  KGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 960

Query: 4243 FGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVD 4422
            FGEPSGHAD VE I  TLV  GF Y+GKD+IYSGITG PLQAYIFMGPIYYQKLKHMV+D
Sbjct: 961  FGEPSGHADTVEAISETLVNRGFSYNGKDIIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1020

Query: 4423 KMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQ 4602
            KMHAR +GPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLMISSD FE+Q
Sbjct: 1021 KMHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQ 1080

Query: 4603 VCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 4779
            VC  CGLLGY+N KL+ G CSTCK+G+ I+TMKLPYACKLL QELQSMNIVPRL+LAEA
Sbjct: 1081 VCRVCGLLGYFNQKLRAGICSTCKNGDNISTMKLPYACKLLIQELQSMNIVPRLKLAEA 1139


>ref|XP_006583557.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2-like isoform
            X1 [Glycine max]
          Length = 1165

 Score = 1447 bits (3747), Expect = 0.0
 Identities = 724/1020 (70%), Positives = 842/1020 (82%), Gaps = 4/1020 (0%)
 Frame = +1

Query: 1732 LPIIL*S*QCVLTEKS*TDLTKLIM*ETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 1911
            +PI+L S  CVL  +           E ELAKLGECPLDPGGYFV+KGTEKVILIQEQLS
Sbjct: 159  MPIMLRSCCCVLHGRD----------EAELAKLGECPLDPGGYFVIKGTEKVILIQEQLS 208

Query: 1912 KNRILIDTDSKGXXXXXXXXXXHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGI 2091
            KNRI+IDTD KG           + K+KT+++++ E  +L+LN F + VP+++V+KAMG+
Sbjct: 209  KNRIIIDTDKKGNITASVTSSTEKIKTKTVVVMEKEKLWLQLNKFPKKVPLMVVMKAMGM 268

Query: 2092 ESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSK 2271
            ESDQE  QMVGRDPR+  +L PS++ C    +YT+E ALEYL   VK   + N  +E  K
Sbjct: 269  ESDQEVTQMVGRDPRYSFLLLPSIEECTKCKVYTREQALEYLDKLVKRPTYSNNAAE--K 326

Query: 2272 VDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLEL 2451
               A   L +VFLANVPV + +FRPKCIYVAVM+RR+++A+LN +A+DDKDYVGNKRLEL
Sbjct: 327  EGAAFSALRDVFLANVPVDQDNFRPKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLEL 386

Query: 2452 AGVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIPP--HIISYGLEHAISS 2622
            +G LI+LLFEDLFK M  E+K+  DK   K  ++  FD+   +     II+ GLE  +S+
Sbjct: 387  SGQLISLLFEDLFKSMTTEVKNLTDKMLEKPDKAKNFDICTLLTRTRSIITLGLERTLST 446

Query: 2623 GNWNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCP 2802
            GN+ +KRF+M+RKG+TQV+ RLS+I +LGHMTR+  QFEK+RKVSGPRALQ SQWGMLCP
Sbjct: 447  GNFEIKRFRMERKGMTQVLQRLSFIGALGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 506

Query: 2803 CDTPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIF 2982
            CDTPEGE+CGLVKNLALMTHVTTDEEE PLI+LC +LGVED+  LS EELH+  ++L+IF
Sbjct: 507  CDTPEGESCGLVKNLALMTHVTTDEEEKPLISLCESLGVEDMKDLSAEELHTPDSFLVIF 566

Query: 2983 NGLMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADN 3162
            NGL+LG HR+P  FA  +R LRRAGKIGEFVSV+VN+KQ CVY+ASDGGRVCRPLVIAD 
Sbjct: 567  NGLILGKHRRPLHFATAIRKLRRAGKIGEFVSVYVNEKQHCVYLASDGGRVCRPLVIADK 626

Query: 3163 GISRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEP 3342
            GISRIK+HHMKEL DG RTFDDFLR+GL+EYLDVNEENNALIALYE +AT  T+HIEIEP
Sbjct: 627  GISRIKQHHMKELMDGVRTFDDFLRDGLLEYLDVNEENNALIALYEGDATSETTHIEIEP 686

Query: 3343 FTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLT 3522
            FTILGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQL RMD+LLYLLVYPQRPLLT
Sbjct: 687  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRMDSLLYLLVYPQRPLLT 746

Query: 3523 TKTIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKK 3702
            TKTIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKY+A+++K
Sbjct: 747  TKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYNAIIQK 806

Query: 3703 HPNRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNP 3882
            H N T DRI+ P  ++     R Q LD+DGIAAPGEI+R +DIYINKQ+P  TR      
Sbjct: 807  HSNDTSDRILRPNRTADTAG-RMQILDDDGIAAPGEILRPYDIYINKQSPIDTRTPKTGS 865

Query: 3883 MA-LPDSEYKFTPQTYKAPEPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHG 4059
             A LPDS Y+   Q++K     VVD+VVL S++++ + IKFL R TRRPELGDKFSSRHG
Sbjct: 866  AANLPDSAYRSNAQSFKGNGGEVVDRVVLCSDKDNNMCIKFLIRHTRRPELGDKFSSRHG 925

Query: 4060 QKGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGS 4239
            QKGVCG IV QEDFPFSE+GICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHYGS
Sbjct: 926  QKGVCGTIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 985

Query: 4240 AFGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVV 4419
            AFGE SGHADKVETI  TLV  GF YSGKD IYSGITG PLQAYIFMGPIYYQKLKHMV+
Sbjct: 986  AFGERSGHADKVETISETLVSKGFNYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1045

Query: 4420 DKMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEI 4599
            DKMHAR SGPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLM+SSD FE+
Sbjct: 1046 DKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLSSDPFEV 1105

Query: 4600 QVCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 4779
            QVCT CGLLGYYNHKLK G CS+CK+G+ I+TMKLPYACKL+ QELQSMNIVPRL+LA+A
Sbjct: 1106 QVCTACGLLGYYNHKLKTGICSSCKNGDNISTMKLPYACKLMIQELQSMNIVPRLKLADA 1165


>gb|ESW24958.1| hypothetical protein PHAVU_004G175000g [Phaseolus vulgaris]
          Length = 1161

 Score = 1441 bits (3729), Expect = 0.0
 Identities = 722/1020 (70%), Positives = 840/1020 (82%), Gaps = 4/1020 (0%)
 Frame = +1

Query: 1732 LPIIL*S*QCVLTEKS*TDLTKLIM*ETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 1911
            +PI+L S  CVL  +           + ELAKLGECPLDPGGYFVVKGTEKVILIQEQLS
Sbjct: 155  MPIMLRSCCCVLYGRD----------QAELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 204

Query: 1912 KNRILIDTDSKGXXXXXXXXXXHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGI 2091
            KNRI+IDTD KG           + K+KTII++++E  +L LN F + VP++ V+KAMGI
Sbjct: 205  KNRIIIDTDKKGNIAASVTSSTEKIKTKTIIVMENEKLWLHLNQFPKKVPLMAVMKAMGI 264

Query: 2092 ESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSK 2271
            ESDQE  QMVGRDPR+  +L PS + C    +YT+E ALEYL   VK   + +  +E  K
Sbjct: 265  ESDQEVTQMVGRDPRYSFLLLPSFEECRKCNVYTQEQALEYLDKMVKRSMYSSNSAE--K 322

Query: 2272 VDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLEL 2451
               A  +L +VFLANVPV   +FRPKCIYVAVM+RR+++A+LN +A+DDKDYVGNKRLEL
Sbjct: 323  EGRAFSVLRDVFLANVPVDGDNFRPKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLEL 382

Query: 2452 AGVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAI--PPHIISYGLEHAISS 2622
            +G LI+LLFEDLFK M  E+K+  DK   K  ++  FD++  +    +II+ GLE  +S+
Sbjct: 383  SGQLISLLFEDLFKSMATEVKNLTDKMLDKPDKARNFDISTLLNRTQNIITLGLERTLST 442

Query: 2623 GNWNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCP 2802
            GN+ +KRF+M+RKG+TQV+ RLS+I ++GHMTR+  QFEK+RKVSGPRALQ SQWGMLCP
Sbjct: 443  GNFEIKRFRMERKGMTQVLQRLSFIGAMGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 502

Query: 2803 CDTPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIF 2982
            CDTPEGE+CGLVKNLALMTHVTTDEEE+PLI++C++LGVEDL LLS EELH+  ++L+I 
Sbjct: 503  CDTPEGESCGLVKNLALMTHVTTDEEESPLISMCYSLGVEDLELLSAEELHTPDSFLVIL 562

Query: 2983 NGLMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADN 3162
            NGL+LG H++P RFA  +R LRR GKIGEFVSVFV++KQ CVY+ASDGGRVCRPLVIAD 
Sbjct: 563  NGLILGKHKRPLRFATAIRKLRRRGKIGEFVSVFVHEKQNCVYLASDGGRVCRPLVIADK 622

Query: 3163 GISRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEP 3342
            GISRIK+HHMKEL DG RTFDDFLR+GL+EYLDVNEENN LIALYE +AT  T+HIEIEP
Sbjct: 623  GISRIKQHHMKELMDGVRTFDDFLRDGLLEYLDVNEENNTLIALYEGDATSETTHIEIEP 682

Query: 3343 FTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLT 3522
            FTILGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQL RMD+LLYLLVYPQRPLLT
Sbjct: 683  FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRMDSLLYLLVYPQRPLLT 742

Query: 3523 TKTIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKK 3702
            TKTIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAV++K
Sbjct: 743  TKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVIQK 802

Query: 3703 HPNRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNP 3882
            H N T DRI+ P  ++     R + LD+DGIAAPGEI++  DIYINKQ+P  TR      
Sbjct: 803  HSNDTSDRILRPNRAADTAG-RMRILDDDGIAAPGEILKPFDIYINKQSPIDTRTPRTGA 861

Query: 3883 MA-LPDSEYKFTPQTYKAPEPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHG 4059
               LPDS Y+   Q++K     VVD+VVL S+++  + IKFL R TRRPELGDKFSSRHG
Sbjct: 862  AGNLPDSAYRSNSQSFKGHGGEVVDRVVLCSDKDKNMCIKFLIRHTRRPELGDKFSSRHG 921

Query: 4060 QKGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGS 4239
            QKGVCG IVQQEDFPFSE+GICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHYGS
Sbjct: 922  QKGVCGTIVQQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGS 981

Query: 4240 AFGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVV 4419
            AFGE SGHADKVE I  TLV  GF YSGKD IYSGITG PLQAYIFMGPIYYQKLKHMV+
Sbjct: 982  AFGERSGHADKVEAISETLVSKGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVL 1041

Query: 4420 DKMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEI 4599
            DKMHAR SGPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLM+SSD FE+
Sbjct: 1042 DKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLSSDPFEV 1101

Query: 4600 QVCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 4779
            QVCT CGLLGYYNHKLK G CS CK+G++I+TMKLPYACKL+ QELQSMNIVPRL+LA+A
Sbjct: 1102 QVCTACGLLGYYNHKLKTGICSYCKNGDKISTMKLPYACKLMIQELQSMNIVPRLKLADA 1161


>ref|NP_001050323.1| Os03g0403100 [Oryza sativa Japonica Group]
            gi|108708688|gb|ABF96483.1| DNA-directed RNA polymerase
            III 130 kDa polypeptide, putative, expressed [Oryza
            sativa Japonica Group] gi|113548794|dbj|BAF12237.1|
            Os03g0403100 [Oryza sativa Japonica Group]
          Length = 1155

 Score = 1440 bits (3728), Expect = 0.0
 Identities = 717/1024 (70%), Positives = 838/1024 (81%), Gaps = 9/1024 (0%)
 Frame = +1

Query: 1732 LPIIL*S*QCVLTEKS*TDLTKLIM*ETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 1911
            LPI+L S  CVL  K           E ELA+ GECPLDPGGYF+VKGTEKVILIQEQLS
Sbjct: 148  LPIMLRSHACVLNGKD----------EAELARYGECPLDPGGYFIVKGTEKVILIQEQLS 197

Query: 1912 KNRILIDTDSKGXXXXXXXXXXHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGI 2091
            KNRI+IDTDSKG          HE KSKT+I ++ E  YL+LN FT+ +PI++V+KAMG+
Sbjct: 198  KNRIIIDTDSKGRVIASVTSSTHEIKSKTVIFMEKEKIYLQLNQFTKPIPIIVVMKAMGM 257

Query: 2092 ESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSK 2271
            ESDQE  QMVGRDPR+G +L PS+Q CA   IYT++ AL+Y+  KV     GN+K  RSK
Sbjct: 258  ESDQEVAQMVGRDPRYGDLLYPSIQECAFERIYTQKQALQYMDDKVMYPGAGNQKEGRSK 317

Query: 2272 VDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLEL 2451
                  IL +VF+A+VPV   +FRPKCIY AVMLRRM++A+LN +  DDKDYVGNKRLEL
Sbjct: 318  -----SILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLEL 372

Query: 2452 AGVLIALLFEDLFKRMNQEIKSHVDKTFSKQRSTMFDVAKAIPPHIISYGLEHAISSGNW 2631
            +G LI+LLFEDLFK MN      ++KT  K  S+  D++  I  +II++GLE AIS+GNW
Sbjct: 373  SGQLISLLFEDLFKTMNSNAVELMNKTSEKIHSSPLDLSLHIKENIITHGLERAISTGNW 432

Query: 2632 NVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCDT 2811
            ++KRF+M RKGV+QV+SRLSY+ASLG+MTRI  QFEKTRK SGPRALQ SQWGMLCPCDT
Sbjct: 433  DIKRFRMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRALQPSQWGMLCPCDT 492

Query: 2812 PEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNGL 2991
            PEGEACGL KNLAL+THVTTD+EE PL+ LC++LGVEDLSLLSGEE+H+  ++L++FNGL
Sbjct: 493  PEGEACGLTKNLALLTHVTTDQEEGPLMNLCYSLGVEDLSLLSGEEIHASGSFLVMFNGL 552

Query: 2992 MLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGIS 3171
            +LG HRQP+RFA+ +R LRR+G IGEFVS+FVN+KQ C+++ASDGGRVCRPL+IAD GI 
Sbjct: 553  ILGKHRQPQRFANAMRKLRRSGIIGEFVSIFVNEKQHCIHIASDGGRVCRPLIIADKGIP 612

Query: 3172 RIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATE-----STSHIEI 3336
            R+KEHHMK+LRDG R+FDDFLR+GL+EYLDVNEENNALIALYE E  +     S +HIEI
Sbjct: 613  RVKEHHMKQLRDGIRSFDDFLRDGLIEYLDVNEENNALIALYEHEDQDDVQRSSITHIEI 672

Query: 3337 EPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPL 3516
            EP TILGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL R D+LLYLLVY QRPL
Sbjct: 673  EPLTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVYAQRPL 732

Query: 3517 LTTKTIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVL 3696
            LTTKTIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCI MKKY+   
Sbjct: 733  LTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTK 792

Query: 3697 KKHPNRTQDRIIGP--TSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREE 3870
            +K+     DRI+ P        +    +ALD DG AAPG IIRNHDIY+NKQTP  T+ +
Sbjct: 793  EKYEGGYSDRIVKPQRDKDGALLKQNMRALDEDGFAAPGLIIRNHDIYVNKQTPRNTKRD 852

Query: 3871 VKNPMALPDSEYKFTPQTYKA--PEPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKF 4044
              +   L D +YK +P  YK    E +VVD+V+L S+ ++ L IK + R TRRPE+GDKF
Sbjct: 853  --SGAHLTDRDYKDSPAVYKGVDGETTVVDRVMLCSDTDEKLIIKCIIRHTRRPEVGDKF 910

Query: 4045 SSRHGQKGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGK 4224
            SSRHGQKGVCG IVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGV CG+
Sbjct: 911  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGQ 970

Query: 4225 FHYGSAFGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKL 4404
            FHYGSAFGEPSG+ADKVE I  TLVKHGF Y+GKDL+YSGI G+P QAY+FMGPIYYQKL
Sbjct: 971  FHYGSAFGEPSGNADKVEDISRTLVKHGFSYNGKDLLYSGILGHPCQAYVFMGPIYYQKL 1030

Query: 4405 KHMVVDKMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISS 4584
            KHMV+DKMHARASGPR++LTRQPTEGRSRDGGLRLGEMERDCLIAYGASM+I ERL+ISS
Sbjct: 1031 KHMVLDKMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLLISS 1090

Query: 4585 DQFEIQVCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRL 4764
            D +++QVC KCGLLGYYNHKLK  +CS CK+GE +A M++PYACKLLFQELQ+MN+VPRL
Sbjct: 1091 DPYQVQVCRKCGLLGYYNHKLKASYCSMCKNGENMAKMRMPYACKLLFQELQAMNVVPRL 1150

Query: 4765 QLAE 4776
            +L E
Sbjct: 1151 KLTE 1154


>gb|AAP03366.1| putative RNA polymerase III [Oryza sativa Japonica Group]
          Length = 1174

 Score = 1440 bits (3728), Expect = 0.0
 Identities = 717/1024 (70%), Positives = 838/1024 (81%), Gaps = 9/1024 (0%)
 Frame = +1

Query: 1732 LPIIL*S*QCVLTEKS*TDLTKLIM*ETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 1911
            LPI+L S  CVL  K           E ELA+ GECPLDPGGYF+VKGTEKVILIQEQLS
Sbjct: 167  LPIMLRSHACVLNGKD----------EAELARYGECPLDPGGYFIVKGTEKVILIQEQLS 216

Query: 1912 KNRILIDTDSKGXXXXXXXXXXHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGI 2091
            KNRI+IDTDSKG          HE KSKT+I ++ E  YL+LN FT+ +PI++V+KAMG+
Sbjct: 217  KNRIIIDTDSKGRVIASVTSSTHEIKSKTVIFMEKEKIYLQLNQFTKPIPIIVVMKAMGM 276

Query: 2092 ESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSK 2271
            ESDQE  QMVGRDPR+G +L PS+Q CA   IYT++ AL+Y+  KV     GN+K  RSK
Sbjct: 277  ESDQEVAQMVGRDPRYGDLLYPSIQECAFERIYTQKQALQYMDDKVMYPGAGNQKEGRSK 336

Query: 2272 VDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLEL 2451
                  IL +VF+A+VPV   +FRPKCIY AVMLRRM++A+LN +  DDKDYVGNKRLEL
Sbjct: 337  -----SILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLEL 391

Query: 2452 AGVLIALLFEDLFKRMNQEIKSHVDKTFSKQRSTMFDVAKAIPPHIISYGLEHAISSGNW 2631
            +G LI+LLFEDLFK MN      ++KT  K  S+  D++  I  +II++GLE AIS+GNW
Sbjct: 392  SGQLISLLFEDLFKTMNSNAVELMNKTSEKIHSSPLDLSLHIKENIITHGLERAISTGNW 451

Query: 2632 NVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCDT 2811
            ++KRF+M RKGV+QV+SRLSY+ASLG+MTRI  QFEKTRK SGPRALQ SQWGMLCPCDT
Sbjct: 452  DIKRFRMHRKGVSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRALQPSQWGMLCPCDT 511

Query: 2812 PEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNGL 2991
            PEGEACGL KNLAL+THVTTD+EE PL+ LC++LGVEDLSLLSGEE+H+  ++L++FNGL
Sbjct: 512  PEGEACGLTKNLALLTHVTTDQEEGPLMNLCYSLGVEDLSLLSGEEIHASGSFLVMFNGL 571

Query: 2992 MLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGIS 3171
            +LG HRQP+RFA+ +R LRR+G IGEFVS+FVN+KQ C+++ASDGGRVCRPL+IAD GI 
Sbjct: 572  ILGKHRQPQRFANAMRKLRRSGIIGEFVSIFVNEKQHCIHIASDGGRVCRPLIIADKGIP 631

Query: 3172 RIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATE-----STSHIEI 3336
            R+KEHHMK+LRDG R+FDDFLR+GL+EYLDVNEENNALIALYE E  +     S +HIEI
Sbjct: 632  RVKEHHMKQLRDGIRSFDDFLRDGLIEYLDVNEENNALIALYEHEDQDDVQRSSITHIEI 691

Query: 3337 EPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPL 3516
            EP TILGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL R D+LLYLLVY QRPL
Sbjct: 692  EPLTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVYAQRPL 751

Query: 3517 LTTKTIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVL 3696
            LTTKTIELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCI MKKY+   
Sbjct: 752  LTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTK 811

Query: 3697 KKHPNRTQDRIIGP--TSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREE 3870
            +K+     DRI+ P        +    +ALD DG AAPG IIRNHDIY+NKQTP  T+ +
Sbjct: 812  EKYEGGYSDRIVKPQRDKDGALLKQNMRALDEDGFAAPGLIIRNHDIYVNKQTPRNTKRD 871

Query: 3871 VKNPMALPDSEYKFTPQTYKA--PEPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKF 4044
              +   L D +YK +P  YK    E +VVD+V+L S+ ++ L IK + R TRRPE+GDKF
Sbjct: 872  --SGAHLTDRDYKDSPAVYKGVDGETTVVDRVMLCSDTDEKLIIKCIIRHTRRPEVGDKF 929

Query: 4045 SSRHGQKGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGK 4224
            SSRHGQKGVCG IVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGV CG+
Sbjct: 930  SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGQ 989

Query: 4225 FHYGSAFGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKL 4404
            FHYGSAFGEPSG+ADKVE I  TLVKHGF Y+GKDL+YSGI G+P QAY+FMGPIYYQKL
Sbjct: 990  FHYGSAFGEPSGNADKVEDISRTLVKHGFSYNGKDLLYSGILGHPCQAYVFMGPIYYQKL 1049

Query: 4405 KHMVVDKMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISS 4584
            KHMV+DKMHARASGPR++LTRQPTEGRSRDGGLRLGEMERDCLIAYGASM+I ERL+ISS
Sbjct: 1050 KHMVLDKMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLLISS 1109

Query: 4585 DQFEIQVCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRL 4764
            D +++QVC KCGLLGYYNHKLK  +CS CK+GE +A M++PYACKLLFQELQ+MN+VPRL
Sbjct: 1110 DPYQVQVCRKCGLLGYYNHKLKASYCSMCKNGENMAKMRMPYACKLLFQELQAMNVVPRL 1169

Query: 4765 QLAE 4776
            +L E
Sbjct: 1170 KLTE 1173


>ref|XP_006362278.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum
            tuberosum]
          Length = 1151

 Score = 1434 bits (3712), Expect = 0.0
 Identities = 712/1018 (69%), Positives = 839/1018 (82%), Gaps = 2/1018 (0%)
 Frame = +1

Query: 1732 LPIIL*S*QCVLTEKS*TDLTKLIM*ETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 1911
            +PI+L S  CVL EK           E +LAKLGECPLDPGGYF+V G EKVILIQEQLS
Sbjct: 149  MPIMLRSCLCVLYEKD----------EEQLAKLGECPLDPGGYFIVNGREKVILIQEQLS 198

Query: 1912 KNRILIDTDSKGXXXXXXXXXXHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGI 2091
            KNRI+IDTD KG           + KSKTII ++ E  YL+LN F   VPI++V+KAMG+
Sbjct: 199  KNRIIIDTDRKGCVQASVICSTEKTKSKTIIKMEKEKVYLELNMFKTKVPIMVVMKAMGM 258

Query: 2092 ESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSK 2271
            ESDQE VQM+GRDPR+  +L PS++ CA   +YT+  ALE+L +           +   K
Sbjct: 259  ESDQEVVQMIGRDPRYSALLLPSIEECADLKLYTQHQALEFLESDKMLTMPSYYNAPVEK 318

Query: 2272 VDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLEL 2451
               A  IL ++FLA+VPVH+ +FR KCIYVAVM+RR++EA+LN +A+DDKDYVGNKRLEL
Sbjct: 319  GARALSILRDMFLAHVPVHQHNFRKKCIYVAVMMRRVMEAILNKDAMDDKDYVGNKRLEL 378

Query: 2452 AGVLIALLFEDLFKRMNQEIKSHVDKTFSKQRSTMFDVAKAIPPHIISYGLEHAISSGNW 2631
            +G L++LLFEDLFK MN E++   D + SK    ++ V K+   + I+  L+  +S+GNW
Sbjct: 379  SGQLLSLLFEDLFKTMNDEVRREFDAS-SKSSDLLYHVKKS---NRITVELQRTLSTGNW 434

Query: 2632 NVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCDT 2811
            ++KRF+M RKG+T+V++RLSYI +LG+MT+I+ QFEK+RKVSGPRALQ SQ+GM+CPCDT
Sbjct: 435  DIKRFRMHRKGMTEVLARLSYIGTLGYMTKIKPQFEKSRKVSGPRALQPSQFGMICPCDT 494

Query: 2812 PEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNGL 2991
            PEGEACGLVKNLALMTHVTTDE+  P+++LC+ LGVEDL  LS  ELH+  +YLII NGL
Sbjct: 495  PEGEACGLVKNLALMTHVTTDEDARPIMSLCYDLGVEDLEQLSAAELHTPNSYLIILNGL 554

Query: 2992 MLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGIS 3171
            +LG H+ P+RFA+ +R LRRAG+I EFVS+FVNDKQ CVY+ASDGGRVCRPLVIA+ G+S
Sbjct: 555  ILGKHKSPQRFANGMRKLRRAGRIREFVSIFVNDKQCCVYIASDGGRVCRPLVIAEKGVS 614

Query: 3172 RIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPFTI 3351
            RIKEHHM ELRDG R F+ FLR+GL+EYLDVNEENN+LIALYE EAT  T+HIEIEPFTI
Sbjct: 615  RIKEHHMNELRDGVRDFNSFLRDGLIEYLDVNEENNSLIALYEKEATPDTTHIEIEPFTI 674

Query: 3352 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTKT 3531
            LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD LLYLLVYPQRPLLTT+T
Sbjct: 675  LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDGLLYLLVYPQRPLLTTRT 734

Query: 3532 IELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHPN 3711
            IELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIVMKKY+A+ +K+ N
Sbjct: 735  IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKYAAICQKYKN 794

Query: 3712 RTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPMAL 3891
             T DR+I P       + + Q LD+DG+A+PGEIIRN DIYINK++PT T  +V +PM L
Sbjct: 795  LTSDRLIKPQRQGSEAE-KMQILDDDGLASPGEIIRNRDIYINKESPTVTITQVTSPMGL 853

Query: 3892 PDSEYKFTPQTYKAP--EPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQK 4065
            PDS YK + QTYK    EP+V+D+V L S+E + L+IKF+ RQTRRPE+GDKFSSRHGQK
Sbjct: 854  PDSAYKSSRQTYKGTEGEPTVIDRVALHSDENNNLSIKFMIRQTRRPEIGDKFSSRHGQK 913

Query: 4066 GVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSAF 4245
            GVCG IVQQED PFSERGICPDLIMNPHGFPSRMT+GKMIELLG KAGV CG+FHYGSAF
Sbjct: 914  GVCGIIVQQEDLPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAF 973

Query: 4246 GEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVDK 4425
            GEPSGHAD V+ I  TLVKHGF Y+GKD IYSGITG PLQAYIFMGPIYYQKLKHMV+DK
Sbjct: 974  GEPSGHADTVDAISETLVKHGFSYNGKDFIYSGITGMPLQAYIFMGPIYYQKLKHMVLDK 1033

Query: 4426 MHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQV 4605
            MHAR SGPR+M+TRQPTEGRSR+GGLR+GEMERDCLIAYGASM+I ERLM+SSD FE QV
Sbjct: 1034 MHARGSGPRVMMTRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIHERLMLSSDPFEAQV 1093

Query: 4606 CTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 4779
            C KCGLLGYYN+KLK+G CS CK+GE ++T+KLPYACKLLFQELQSMNIVPRL+L EA
Sbjct: 1094 CRKCGLLGYYNYKLKIGICSMCKNGENMSTLKLPYACKLLFQELQSMNIVPRLKLTEA 1151


>ref|XP_004510587.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cicer
            arietinum]
          Length = 1134

 Score = 1434 bits (3712), Expect = 0.0
 Identities = 720/1019 (70%), Positives = 840/1019 (82%), Gaps = 3/1019 (0%)
 Frame = +1

Query: 1732 LPIIL*S*QCVLTEKS*TDLTKLIM*ETELAKLGECPLDPGGYFVVKGTEKVILIQEQLS 1911
            +PI+L S  CVL  +           E ELAKLGECPLDPGGYFV+KGTEKVILIQEQLS
Sbjct: 129  MPIMLRSCCCVLYNRD----------EAELAKLGECPLDPGGYFVIKGTEKVILIQEQLS 178

Query: 1912 KNRILIDTDSKGXXXXXXXXXXHEKKSKTIIIVKHEIFYLKLNTFTEDVPIVIVVKAMGI 2091
            KNRI+IDTD K            + K+KT I+++ E  +L+LN F   VP++IV+KAMG+
Sbjct: 179  KNRIIIDTDKKKNITASVTSSTEKVKTKTTILMEREKMWLELNQFQTKVPLMIVMKAMGM 238

Query: 2092 ESDQEFVQMVGRDPRFGGILAPSLQNCASYGIYTKELALEYLGTKVKSMRFGNEKSERSK 2271
            ESD E VQM+GRDPR+G +L PS++ C   G+ T+  AL YL +K K   F   + E  K
Sbjct: 239  ESDHEVVQMIGRDPRYGLLLLPSIEECNKSGVSTQAQALAYLDSKAKRSMFSTMQPE--K 296

Query: 2272 VDEARDILHNVFLANVPVHKFDFRPKCIYVAVMLRRMIEAMLNPEAVDDKDYVGNKRLEL 2451
               A  IL +VFLANVPVH+ +FRPKCIYVAVM+RR+++A+LN +A+DDKDYVGNKRLEL
Sbjct: 297  EGRAFSILRDVFLANVPVHEDNFRPKCIYVAVMMRRILDAILNKDAMDDKDYVGNKRLEL 356

Query: 2452 AGVLIALLFEDLFKRMNQEIKSHVDKTFSK-QRSTMFDVAKAIPPHIISYGLEHAISSGN 2628
            +G LI+LLFEDLFK M  E+++  DK   K  R+  FD    +    IS GLE  +S+GN
Sbjct: 357  SGQLISLLFEDLFKTMTTELQTLTDKYLEKPDRAKKFDFTTLLNRDYISPGLERYLSTGN 416

Query: 2629 WNVKRFKMDRKGVTQVVSRLSYIASLGHMTRIQSQFEKTRKVSGPRALQSSQWGMLCPCD 2808
            +++KRFKM R G+TQV+ RLS+I++LG MTR++ QFEK++KVSGPRALQ SQWGMLCPCD
Sbjct: 417  FDIKRFKMHRSGMTQVLQRLSFISALGQMTRVKPQFEKSKKVSGPRALQPSQWGMLCPCD 476

Query: 2809 TPEGEACGLVKNLALMTHVTTDEEEAPLITLCHTLGVEDLSLLSGEELHSRKAYLIIFNG 2988
            TPEGEACGLVKNLALMTHVTTD++EAPLI+LC+ LGVED+  LSGEELH+  +YL+IFNG
Sbjct: 477  TPEGEACGLVKNLALMTHVTTDDDEAPLISLCYILGVEDIEHLSGEELHTPNSYLVIFNG 536

Query: 2989 LMLGIHRQPKRFAHFLRILRRAGKIGEFVSVFVNDKQRCVYVASDGGRVCRPLVIADNGI 3168
            L+LG HR+P+RFA  +R LRRAG IGEFVSV++N+KQ CVY+ASDGGRVCRPLVIAD GI
Sbjct: 537  LILGKHRRPQRFATAMRNLRRAGVIGEFVSVYLNEKQCCVYLASDGGRVCRPLVIADKGI 596

Query: 3169 SRIKEHHMKELRDGFRTFDDFLREGLVEYLDVNEENNALIALYESEATESTSHIEIEPFT 3348
            SR+K HHMKEL+DG  TF+ FLR GL+EYLDVNEENNALIALYE +AT  T+HIEIEPFT
Sbjct: 597  SRVKAHHMKELKDGVTTFNHFLRNGLIEYLDVNEENNALIALYEGDATPKTTHIEIEPFT 656

Query: 3349 ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTK 3528
            ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL RMDTLLYLLVYPQRPLLTTK
Sbjct: 657  ILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLVYPQRPLLTTK 716

Query: 3529 TIELVKYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYSAVLKKHP 3708
            +IELV YDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIVMK+Y A+ +K+ 
Sbjct: 717  SIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYVAIRQKYS 776

Query: 3709 NRTQDRIIGPTSSSGRVDTRCQALDNDGIAAPGEIIRNHDIYINKQTPTKTREEVKNPMA 3888
            N T+DRII P  ++     R Q LD+DGIAAPGEIIR +D+YINKQ+P +TR       A
Sbjct: 777  NGTEDRIIRPNRAADTTG-RMQILDDDGIAAPGEIIRPNDMYINKQSPIETRATTTGSTA 835

Query: 3889 -LPDSEYKFTPQTY-KAPEPSVVDKVVLTSNEEDALNIKFLFRQTRRPELGDKFSSRHGQ 4062
             LPD+ Y+ TPQT+ K     VVD+VVL ++++  L IKFL R TRRPELGDKFSSRHGQ
Sbjct: 836  KLPDNAYRSTPQTFNKCHGGEVVDRVVLCNDKDTNLCIKFLTRHTRRPELGDKFSSRHGQ 895

Query: 4063 KGVCGNIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVCCGKFHYGSA 4242
            KGVCG    QEDFPFSE+GICPDLIMNPHGFPSRMT+GKMIELLGGKAGV CG+FHYGSA
Sbjct: 896  KGVCGXXXXQEDFPFSEKGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 955

Query: 4243 FGEPSGHADKVETICATLVKHGFCYSGKDLIYSGITGYPLQAYIFMGPIYYQKLKHMVVD 4422
            FGE SGHADKVETI  TLVKHGF Y+GKD IYSGITG PLQAYIFMGPIYYQKLKHMV+D
Sbjct: 956  FGERSGHADKVETISETLVKHGFNYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1015

Query: 4423 KMHARASGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMMILERLMISSDQFEIQ 4602
            KMHAR +GPR ++TRQPTEGR+R+GGLR+GEMERDCLIAYGASM+I ERLMISSD FE+Q
Sbjct: 1016 KMHARGNGPRALMTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQ 1075

Query: 4603 VCTKCGLLGYYNHKLKMGFCSTCKSGEEIATMKLPYACKLLFQELQSMNIVPRLQLAEA 4779
            VC KCGLLGYYNHKLK G CS+CK+GE+I+T+KLPYACKLL QELQSMNIVPRL+LA+A
Sbjct: 1076 VCRKCGLLGYYNHKLKTGICSSCKNGEQISTVKLPYACKLLMQELQSMNIVPRLKLADA 1134