BLASTX nr result

ID: Ephedra26_contig00004112 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00004112
         (577 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMT05432.1| 40S ribosomal protein S28 [Aegilops tauschii]          100   5e-19
gb|ABK20899.1| unknown [Picea sitchensis] gi|116778837|gb|ABK210...    99   1e-18
tpg|DAA43569.1| TPA: 40S ribosomal protein S28 [Zea mays]              98   2e-18
gb|EEC74585.1| hypothetical protein OsI_10164 [Oryza sativa Indi...    98   2e-18
gb|EMS68105.1| 40S ribosomal protein S28 [Triticum urartu]             97   2e-18
tpg|DAA43568.1| TPA: 40S ribosomal protein S28, partial [Zea mays]     97   2e-18
ref|XP_003575873.1| PREDICTED: 40S ribosomal protein S28-like [B...    97   2e-18
gb|EEE58387.1| hypothetical protein OsJ_09549 [Oryza sativa Japo...    97   2e-18
gb|EEC66929.1| hypothetical protein OsI_33537 [Oryza sativa Indi...    97   2e-18
gb|ACG31085.1| 40S ribosomal protein S28 [Zea mays]                    97   2e-18
ref|NP_001064584.1| Os10g0411700 [Oryza sativa Japonica Group] g...    97   2e-18
gb|AAP80664.1|AF479045_1 S28 ribosomal protein, partial [Triticu...    97   2e-18
ref|XP_003575874.1| PREDICTED: uncharacterized protein LOC100831...    97   3e-18
ref|XP_003574115.1| PREDICTED: 40S ribosomal protein S28-like [B...    97   3e-18
emb|CBI29957.3| unnamed protein product [Vitis vinifera]               96   7e-18
ref|XP_002281530.1| PREDICTED: 40S ribosomal protein S28-like [V...    96   7e-18
ref|XP_001758744.1| predicted protein [Physcomitrella patens] gi...    95   1e-17
ref|XP_004154925.1| PREDICTED: 40S ribosomal protein S28-like [C...    95   1e-17
emb|CAA04565.1| rpS28 [Hordeum vulgare subsp. vulgare]                 95   1e-17
ref|NP_001105548.1| 40S ribosomal protein S28 [Zea mays] gi|1173...    94   2e-17

>gb|EMT05432.1| 40S ribosomal protein S28 [Aegilops tauschii]
          Length = 107

 Score = 99.8 bits (247), Expect = 5e-19
 Identities = 50/52 (96%), Positives = 51/52 (98%)
 Frame = +1

Query: 127 GMDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
           GMD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 42  GMDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 93


>gb|ABK20899.1| unknown [Picea sitchensis] gi|116778837|gb|ABK21020.1| unknown
           [Picea sitchensis] gi|116779805|gb|ABK21436.1| unknown
           [Picea sitchensis] gi|116779938|gb|ABK21486.1| unknown
           [Picea sitchensis] gi|116779954|gb|ABK21493.1| unknown
           [Picea sitchensis] gi|116779984|gb|ABK21504.1| unknown
           [Picea sitchensis] gi|116780339|gb|ABK21639.1| unknown
           [Picea sitchensis] gi|116780954|gb|ABK21897.1| unknown
           [Picea sitchensis] gi|116788726|gb|ABK24977.1| unknown
           [Picea sitchensis] gi|116790627|gb|ABK25683.1| unknown
           [Picea sitchensis] gi|148906383|gb|ABR16346.1| unknown
           [Picea sitchensis] gi|148907364|gb|ABR16816.1| unknown
           [Picea sitchensis] gi|148907622|gb|ABR16940.1| unknown
           [Picea sitchensis] gi|148908891|gb|ABR17550.1| unknown
           [Picea sitchensis] gi|148908941|gb|ABR17575.1| unknown
           [Picea sitchensis] gi|148909740|gb|ABR17961.1| unknown
           [Picea sitchensis] gi|148910472|gb|ABR18311.1| unknown
           [Picea sitchensis] gi|148910818|gb|ABR18475.1| unknown
           [Picea sitchensis] gi|224285480|gb|ACN40462.1| unknown
           [Picea sitchensis] gi|224286119|gb|ACN40770.1| unknown
           [Picea sitchensis]
          Length = 65

 Score = 98.6 bits (244), Expect = 1e-18
 Identities = 48/51 (94%), Positives = 51/51 (100%)
 Frame = +1

Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
           MD+GVKLAVVVKV+GRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGD+
Sbjct: 1   MDTGVKLAVVVKVIGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDV 51


>tpg|DAA43569.1| TPA: 40S ribosomal protein S28 [Zea mays]
          Length = 68

 Score = 97.8 bits (242), Expect = 2e-18
 Identities = 49/54 (90%), Positives = 51/54 (94%)
 Frame = +1

Query: 121 LSGMDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
           +  MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 1   MDDMDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 54


>gb|EEC74585.1| hypothetical protein OsI_10164 [Oryza sativa Indica Group]
          Length = 101

 Score = 97.8 bits (242), Expect = 2e-18
 Identities = 49/53 (92%), Positives = 51/53 (96%)
 Frame = +1

Query: 124 SGMDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
           + MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 35  ASMDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 87


>gb|EMS68105.1| 40S ribosomal protein S28 [Triticum urartu]
          Length = 115

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 49/51 (96%), Positives = 50/51 (98%)
 Frame = +1

Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
           MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 51  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 101


>tpg|DAA43568.1| TPA: 40S ribosomal protein S28, partial [Zea mays]
          Length = 103

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 49/51 (96%), Positives = 50/51 (98%)
 Frame = +1

Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
           MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 39  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 89


>ref|XP_003575873.1| PREDICTED: 40S ribosomal protein S28-like [Brachypodium distachyon]
          Length = 115

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 52/70 (74%), Positives = 55/70 (78%)
 Frame = +1

Query: 73  QQQSTTPKLSFLEI**LSGMDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRN 252
           QQQ  +P            MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRN
Sbjct: 39  QQQPPSPTAE-------ESMDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRN 91

Query: 253 VKGPVREGDI 282
           VKGP+REGDI
Sbjct: 92  VKGPIREGDI 101


>gb|EEE58387.1| hypothetical protein OsJ_09549 [Oryza sativa Japonica Group]
          Length = 93

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 49/51 (96%), Positives = 50/51 (98%)
 Frame = +1

Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
           MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 29  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 79


>gb|EEC66929.1| hypothetical protein OsI_33537 [Oryza sativa Indica Group]
          Length = 400

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 49/51 (96%), Positives = 50/51 (98%)
 Frame = +1

Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
           MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 336 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 386


>gb|ACG31085.1| 40S ribosomal protein S28 [Zea mays]
          Length = 65

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 49/51 (96%), Positives = 50/51 (98%)
 Frame = +1

Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
           MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 1   MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51


>ref|NP_001064584.1| Os10g0411700 [Oryza sativa Japonica Group]
           gi|226492207|ref|NP_001147283.1| 40S ribosomal protein
           S28 [Zea mays] gi|226528567|ref|NP_001147474.1| 40S
           ribosomal protein S28 [Zea mays]
           gi|226530547|ref|NP_001147106.1| 40S ribosomal protein
           S28 [Zea mays] gi|297600386|ref|NP_001049079.2|
           Os03g0167100 [Oryza sativa Japonica Group]
           gi|242042107|ref|XP_002468448.1| hypothetical protein
           SORBIDRAFT_01g046070 [Sorghum bicolor]
           gi|514816860|ref|XP_004983165.1| PREDICTED: 40S
           ribosomal protein S28-like [Setaria italica]
           gi|514821804|ref|XP_004985578.1| PREDICTED: 40S
           ribosomal protein S28-like [Setaria italica]
           gi|582044877|pdb|3J60|CC Chain c, Localization Of The
           Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-em
           Map Of Triticum Aestivum Translating 80s Ribosome
           gi|113639193|dbj|BAF26498.1| Os10g0411700 [Oryza sativa
           Japonica Group] gi|194704454|gb|ACF86311.1| unknown [Zea
           mays] gi|195605026|gb|ACG24343.1| 40S ribosomal protein
           S28 [Zea mays] gi|195605034|gb|ACG24347.1| 40S ribosomal
           protein S28 [Zea mays] gi|195607258|gb|ACG25459.1| 40S
           ribosomal protein S28 [Zea mays]
           gi|195609472|gb|ACG26566.1| 40S ribosomal protein S28
           [Zea mays] gi|195609816|gb|ACG26738.1| 40S ribosomal
           protein S28 [Zea mays] gi|195610066|gb|ACG26863.1| 40S
           ribosomal protein S28 [Zea mays]
           gi|195611640|gb|ACG27650.1| 40S ribosomal protein S28
           [Zea mays] gi|195618106|gb|ACG30883.1| 40S ribosomal
           protein S28 [Zea mays] gi|195618338|gb|ACG30999.1| 40S
           ribosomal protein S28 [Zea mays]
           gi|195618690|gb|ACG31175.1| 40S ribosomal protein S28
           [Zea mays] gi|195619662|gb|ACG31661.1| 40S ribosomal
           protein S28 [Zea mays] gi|195620148|gb|ACG31904.1| 40S
           ribosomal protein S28 [Zea mays]
           gi|195655603|gb|ACG47269.1| 40S ribosomal protein S28
           [Zea mays] gi|195655989|gb|ACG47462.1| 40S ribosomal
           protein S28 [Zea mays] gi|222612816|gb|EEE50948.1|
           hypothetical protein OsJ_31495 [Oryza sativa Japonica
           Group] gi|241922302|gb|EER95446.1| hypothetical protein
           SORBIDRAFT_01g046070 [Sorghum bicolor]
           gi|255674234|dbj|BAF10993.2| Os03g0167100 [Oryza sativa
           Japonica Group] gi|326509929|dbj|BAJ87180.1| predicted
           protein [Hordeum vulgare subsp. vulgare]
           gi|326526071|dbj|BAJ93212.1| predicted protein [Hordeum
           vulgare subsp. vulgare] gi|413956006|gb|AFW88655.1| 40S
           ribosomal protein S28 isoform 1 [Zea mays]
           gi|413956007|gb|AFW88656.1| 40S ribosomal protein S28
           isoform 2 [Zea mays] gi|414865013|tpg|DAA43570.1| TPA:
           40S ribosomal protein S28 [Zea mays]
           gi|414866364|tpg|DAA44921.1| TPA: 40S ribosomal protein
           S28 isoform 1 [Zea mays] gi|414866365|tpg|DAA44922.1|
           TPA: 40S ribosomal protein S28 isoform 2 [Zea mays]
           gi|414866366|tpg|DAA44923.1| TPA: 40S ribosomal protein
           S28 isoform 3 [Zea mays] gi|414866367|tpg|DAA44924.1|
           TPA: 40S ribosomal protein S28 isoform 4 [Zea mays]
           gi|474386341|gb|EMS64988.1| 40S ribosomal protein S28
           [Triticum urartu] gi|475553296|gb|EMT11959.1| 40S
           ribosomal protein S28 [Aegilops tauschii]
          Length = 65

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 49/51 (96%), Positives = 50/51 (98%)
 Frame = +1

Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
           MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 1   MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51


>gb|AAP80664.1|AF479045_1 S28 ribosomal protein, partial [Triticum aestivum]
          Length = 86

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 49/51 (96%), Positives = 50/51 (98%)
 Frame = +1

Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
           MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 22  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 72


>ref|XP_003575874.1| PREDICTED: uncharacterized protein LOC100831577 [Brachypodium
           distachyon]
          Length = 554

 Score = 97.1 bits (240), Expect = 3e-18
 Identities = 48/51 (94%), Positives = 50/51 (98%)
 Frame = +1

Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
           MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGP+REGDI
Sbjct: 490 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPIREGDI 540


>ref|XP_003574115.1| PREDICTED: 40S ribosomal protein S28-like [Brachypodium distachyon]
          Length = 65

 Score = 97.1 bits (240), Expect = 3e-18
 Identities = 48/51 (94%), Positives = 50/51 (98%)
 Frame = +1

Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
           MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGP+REGDI
Sbjct: 1   MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPIREGDI 51


>emb|CBI29957.3| unnamed protein product [Vitis vinifera]
          Length = 111

 Score = 95.9 bits (237), Expect = 7e-18
 Identities = 48/51 (94%), Positives = 49/51 (96%)
 Frame = +1

Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
           M+SGVK AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGDI
Sbjct: 47  MESGVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 97


>ref|XP_002281530.1| PREDICTED: 40S ribosomal protein S28-like [Vitis vinifera]
          Length = 65

 Score = 95.9 bits (237), Expect = 7e-18
 Identities = 48/51 (94%), Positives = 49/51 (96%)
 Frame = +1

Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
           M+SGVK AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGDI
Sbjct: 1   MESGVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 51


>ref|XP_001758744.1| predicted protein [Physcomitrella patens]
           gi|168059761|ref|XP_001781869.1| predicted protein
           [Physcomitrella patens] gi|162666676|gb|EDQ53324.1|
           predicted protein [Physcomitrella patens]
           gi|162689881|gb|EDQ76250.1| predicted protein
           [Physcomitrella patens]
          Length = 65

 Score = 95.1 bits (235), Expect = 1e-17
 Identities = 46/51 (90%), Positives = 50/51 (98%)
 Frame = +1

Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
           MD+ VKLA+V+KV+GRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 1   MDTAVKLAIVMKVIGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51


>ref|XP_004154925.1| PREDICTED: 40S ribosomal protein S28-like [Cucumis sativus]
          Length = 68

 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 47/54 (87%), Positives = 50/54 (92%)
 Frame = +1

Query: 121 LSGMDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
           + GM+S +K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGDI
Sbjct: 1   MHGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDI 54


>emb|CAA04565.1| rpS28 [Hordeum vulgare subsp. vulgare]
          Length = 65

 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 48/51 (94%), Positives = 49/51 (96%)
 Frame = +1

Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
           MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLD QNRLIMRNVKGPVREGDI
Sbjct: 1   MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDHQNRLIMRNVKGPVREGDI 51


>ref|NP_001105548.1| 40S ribosomal protein S28 [Zea mays]
           gi|1173237|sp|P46302.1|RS28_MAIZE RecName: Full=40S
           ribosomal protein S28 gi|557682|emb|CAA57636.1| small
           subunit ribosomal protein S28 [Zea mays]
          Length = 65

 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 48/51 (94%), Positives = 49/51 (96%)
 Frame = +1

Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
           MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPV EGDI
Sbjct: 1   MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDI 51


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