BLASTX nr result
ID: Ephedra26_contig00004112
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00004112
(577 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMT05432.1| 40S ribosomal protein S28 [Aegilops tauschii] 100 5e-19
gb|ABK20899.1| unknown [Picea sitchensis] gi|116778837|gb|ABK210... 99 1e-18
tpg|DAA43569.1| TPA: 40S ribosomal protein S28 [Zea mays] 98 2e-18
gb|EEC74585.1| hypothetical protein OsI_10164 [Oryza sativa Indi... 98 2e-18
gb|EMS68105.1| 40S ribosomal protein S28 [Triticum urartu] 97 2e-18
tpg|DAA43568.1| TPA: 40S ribosomal protein S28, partial [Zea mays] 97 2e-18
ref|XP_003575873.1| PREDICTED: 40S ribosomal protein S28-like [B... 97 2e-18
gb|EEE58387.1| hypothetical protein OsJ_09549 [Oryza sativa Japo... 97 2e-18
gb|EEC66929.1| hypothetical protein OsI_33537 [Oryza sativa Indi... 97 2e-18
gb|ACG31085.1| 40S ribosomal protein S28 [Zea mays] 97 2e-18
ref|NP_001064584.1| Os10g0411700 [Oryza sativa Japonica Group] g... 97 2e-18
gb|AAP80664.1|AF479045_1 S28 ribosomal protein, partial [Triticu... 97 2e-18
ref|XP_003575874.1| PREDICTED: uncharacterized protein LOC100831... 97 3e-18
ref|XP_003574115.1| PREDICTED: 40S ribosomal protein S28-like [B... 97 3e-18
emb|CBI29957.3| unnamed protein product [Vitis vinifera] 96 7e-18
ref|XP_002281530.1| PREDICTED: 40S ribosomal protein S28-like [V... 96 7e-18
ref|XP_001758744.1| predicted protein [Physcomitrella patens] gi... 95 1e-17
ref|XP_004154925.1| PREDICTED: 40S ribosomal protein S28-like [C... 95 1e-17
emb|CAA04565.1| rpS28 [Hordeum vulgare subsp. vulgare] 95 1e-17
ref|NP_001105548.1| 40S ribosomal protein S28 [Zea mays] gi|1173... 94 2e-17
>gb|EMT05432.1| 40S ribosomal protein S28 [Aegilops tauschii]
Length = 107
Score = 99.8 bits (247), Expect = 5e-19
Identities = 50/52 (96%), Positives = 51/52 (98%)
Frame = +1
Query: 127 GMDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
GMD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 42 GMDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 93
>gb|ABK20899.1| unknown [Picea sitchensis] gi|116778837|gb|ABK21020.1| unknown
[Picea sitchensis] gi|116779805|gb|ABK21436.1| unknown
[Picea sitchensis] gi|116779938|gb|ABK21486.1| unknown
[Picea sitchensis] gi|116779954|gb|ABK21493.1| unknown
[Picea sitchensis] gi|116779984|gb|ABK21504.1| unknown
[Picea sitchensis] gi|116780339|gb|ABK21639.1| unknown
[Picea sitchensis] gi|116780954|gb|ABK21897.1| unknown
[Picea sitchensis] gi|116788726|gb|ABK24977.1| unknown
[Picea sitchensis] gi|116790627|gb|ABK25683.1| unknown
[Picea sitchensis] gi|148906383|gb|ABR16346.1| unknown
[Picea sitchensis] gi|148907364|gb|ABR16816.1| unknown
[Picea sitchensis] gi|148907622|gb|ABR16940.1| unknown
[Picea sitchensis] gi|148908891|gb|ABR17550.1| unknown
[Picea sitchensis] gi|148908941|gb|ABR17575.1| unknown
[Picea sitchensis] gi|148909740|gb|ABR17961.1| unknown
[Picea sitchensis] gi|148910472|gb|ABR18311.1| unknown
[Picea sitchensis] gi|148910818|gb|ABR18475.1| unknown
[Picea sitchensis] gi|224285480|gb|ACN40462.1| unknown
[Picea sitchensis] gi|224286119|gb|ACN40770.1| unknown
[Picea sitchensis]
Length = 65
Score = 98.6 bits (244), Expect = 1e-18
Identities = 48/51 (94%), Positives = 51/51 (100%)
Frame = +1
Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
MD+GVKLAVVVKV+GRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGD+
Sbjct: 1 MDTGVKLAVVVKVIGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDV 51
>tpg|DAA43569.1| TPA: 40S ribosomal protein S28 [Zea mays]
Length = 68
Score = 97.8 bits (242), Expect = 2e-18
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +1
Query: 121 LSGMDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
+ MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 1 MDDMDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 54
>gb|EEC74585.1| hypothetical protein OsI_10164 [Oryza sativa Indica Group]
Length = 101
Score = 97.8 bits (242), Expect = 2e-18
Identities = 49/53 (92%), Positives = 51/53 (96%)
Frame = +1
Query: 124 SGMDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
+ MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 35 ASMDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 87
>gb|EMS68105.1| 40S ribosomal protein S28 [Triticum urartu]
Length = 115
Score = 97.4 bits (241), Expect = 2e-18
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +1
Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 51 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 101
>tpg|DAA43568.1| TPA: 40S ribosomal protein S28, partial [Zea mays]
Length = 103
Score = 97.4 bits (241), Expect = 2e-18
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +1
Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 39 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 89
>ref|XP_003575873.1| PREDICTED: 40S ribosomal protein S28-like [Brachypodium distachyon]
Length = 115
Score = 97.4 bits (241), Expect = 2e-18
Identities = 52/70 (74%), Positives = 55/70 (78%)
Frame = +1
Query: 73 QQQSTTPKLSFLEI**LSGMDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRN 252
QQQ +P MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRN
Sbjct: 39 QQQPPSPTAE-------ESMDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRN 91
Query: 253 VKGPVREGDI 282
VKGP+REGDI
Sbjct: 92 VKGPIREGDI 101
>gb|EEE58387.1| hypothetical protein OsJ_09549 [Oryza sativa Japonica Group]
Length = 93
Score = 97.4 bits (241), Expect = 2e-18
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +1
Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 29 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 79
>gb|EEC66929.1| hypothetical protein OsI_33537 [Oryza sativa Indica Group]
Length = 400
Score = 97.4 bits (241), Expect = 2e-18
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +1
Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 336 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 386
>gb|ACG31085.1| 40S ribosomal protein S28 [Zea mays]
Length = 65
Score = 97.4 bits (241), Expect = 2e-18
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +1
Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51
>ref|NP_001064584.1| Os10g0411700 [Oryza sativa Japonica Group]
gi|226492207|ref|NP_001147283.1| 40S ribosomal protein
S28 [Zea mays] gi|226528567|ref|NP_001147474.1| 40S
ribosomal protein S28 [Zea mays]
gi|226530547|ref|NP_001147106.1| 40S ribosomal protein
S28 [Zea mays] gi|297600386|ref|NP_001049079.2|
Os03g0167100 [Oryza sativa Japonica Group]
gi|242042107|ref|XP_002468448.1| hypothetical protein
SORBIDRAFT_01g046070 [Sorghum bicolor]
gi|514816860|ref|XP_004983165.1| PREDICTED: 40S
ribosomal protein S28-like [Setaria italica]
gi|514821804|ref|XP_004985578.1| PREDICTED: 40S
ribosomal protein S28-like [Setaria italica]
gi|582044877|pdb|3J60|CC Chain c, Localization Of The
Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-em
Map Of Triticum Aestivum Translating 80s Ribosome
gi|113639193|dbj|BAF26498.1| Os10g0411700 [Oryza sativa
Japonica Group] gi|194704454|gb|ACF86311.1| unknown [Zea
mays] gi|195605026|gb|ACG24343.1| 40S ribosomal protein
S28 [Zea mays] gi|195605034|gb|ACG24347.1| 40S ribosomal
protein S28 [Zea mays] gi|195607258|gb|ACG25459.1| 40S
ribosomal protein S28 [Zea mays]
gi|195609472|gb|ACG26566.1| 40S ribosomal protein S28
[Zea mays] gi|195609816|gb|ACG26738.1| 40S ribosomal
protein S28 [Zea mays] gi|195610066|gb|ACG26863.1| 40S
ribosomal protein S28 [Zea mays]
gi|195611640|gb|ACG27650.1| 40S ribosomal protein S28
[Zea mays] gi|195618106|gb|ACG30883.1| 40S ribosomal
protein S28 [Zea mays] gi|195618338|gb|ACG30999.1| 40S
ribosomal protein S28 [Zea mays]
gi|195618690|gb|ACG31175.1| 40S ribosomal protein S28
[Zea mays] gi|195619662|gb|ACG31661.1| 40S ribosomal
protein S28 [Zea mays] gi|195620148|gb|ACG31904.1| 40S
ribosomal protein S28 [Zea mays]
gi|195655603|gb|ACG47269.1| 40S ribosomal protein S28
[Zea mays] gi|195655989|gb|ACG47462.1| 40S ribosomal
protein S28 [Zea mays] gi|222612816|gb|EEE50948.1|
hypothetical protein OsJ_31495 [Oryza sativa Japonica
Group] gi|241922302|gb|EER95446.1| hypothetical protein
SORBIDRAFT_01g046070 [Sorghum bicolor]
gi|255674234|dbj|BAF10993.2| Os03g0167100 [Oryza sativa
Japonica Group] gi|326509929|dbj|BAJ87180.1| predicted
protein [Hordeum vulgare subsp. vulgare]
gi|326526071|dbj|BAJ93212.1| predicted protein [Hordeum
vulgare subsp. vulgare] gi|413956006|gb|AFW88655.1| 40S
ribosomal protein S28 isoform 1 [Zea mays]
gi|413956007|gb|AFW88656.1| 40S ribosomal protein S28
isoform 2 [Zea mays] gi|414865013|tpg|DAA43570.1| TPA:
40S ribosomal protein S28 [Zea mays]
gi|414866364|tpg|DAA44921.1| TPA: 40S ribosomal protein
S28 isoform 1 [Zea mays] gi|414866365|tpg|DAA44922.1|
TPA: 40S ribosomal protein S28 isoform 2 [Zea mays]
gi|414866366|tpg|DAA44923.1| TPA: 40S ribosomal protein
S28 isoform 3 [Zea mays] gi|414866367|tpg|DAA44924.1|
TPA: 40S ribosomal protein S28 isoform 4 [Zea mays]
gi|474386341|gb|EMS64988.1| 40S ribosomal protein S28
[Triticum urartu] gi|475553296|gb|EMT11959.1| 40S
ribosomal protein S28 [Aegilops tauschii]
Length = 65
Score = 97.4 bits (241), Expect = 2e-18
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +1
Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51
>gb|AAP80664.1|AF479045_1 S28 ribosomal protein, partial [Triticum aestivum]
Length = 86
Score = 97.4 bits (241), Expect = 2e-18
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +1
Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 22 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 72
>ref|XP_003575874.1| PREDICTED: uncharacterized protein LOC100831577 [Brachypodium
distachyon]
Length = 554
Score = 97.1 bits (240), Expect = 3e-18
Identities = 48/51 (94%), Positives = 50/51 (98%)
Frame = +1
Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGP+REGDI
Sbjct: 490 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPIREGDI 540
>ref|XP_003574115.1| PREDICTED: 40S ribosomal protein S28-like [Brachypodium distachyon]
Length = 65
Score = 97.1 bits (240), Expect = 3e-18
Identities = 48/51 (94%), Positives = 50/51 (98%)
Frame = +1
Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGP+REGDI
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPIREGDI 51
>emb|CBI29957.3| unnamed protein product [Vitis vinifera]
Length = 111
Score = 95.9 bits (237), Expect = 7e-18
Identities = 48/51 (94%), Positives = 49/51 (96%)
Frame = +1
Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
M+SGVK AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGDI
Sbjct: 47 MESGVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 97
>ref|XP_002281530.1| PREDICTED: 40S ribosomal protein S28-like [Vitis vinifera]
Length = 65
Score = 95.9 bits (237), Expect = 7e-18
Identities = 48/51 (94%), Positives = 49/51 (96%)
Frame = +1
Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
M+SGVK AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGDI
Sbjct: 1 MESGVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 51
>ref|XP_001758744.1| predicted protein [Physcomitrella patens]
gi|168059761|ref|XP_001781869.1| predicted protein
[Physcomitrella patens] gi|162666676|gb|EDQ53324.1|
predicted protein [Physcomitrella patens]
gi|162689881|gb|EDQ76250.1| predicted protein
[Physcomitrella patens]
Length = 65
Score = 95.1 bits (235), Expect = 1e-17
Identities = 46/51 (90%), Positives = 50/51 (98%)
Frame = +1
Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
MD+ VKLA+V+KV+GRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI
Sbjct: 1 MDTAVKLAIVMKVIGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 51
>ref|XP_004154925.1| PREDICTED: 40S ribosomal protein S28-like [Cucumis sativus]
Length = 68
Score = 94.7 bits (234), Expect = 1e-17
Identities = 47/54 (87%), Positives = 50/54 (92%)
Frame = +1
Query: 121 LSGMDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
+ GM+S +K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGDI
Sbjct: 1 MHGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDI 54
>emb|CAA04565.1| rpS28 [Hordeum vulgare subsp. vulgare]
Length = 65
Score = 94.7 bits (234), Expect = 1e-17
Identities = 48/51 (94%), Positives = 49/51 (96%)
Frame = +1
Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLD QNRLIMRNVKGPVREGDI
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDHQNRLIMRNVKGPVREGDI 51
>ref|NP_001105548.1| 40S ribosomal protein S28 [Zea mays]
gi|1173237|sp|P46302.1|RS28_MAIZE RecName: Full=40S
ribosomal protein S28 gi|557682|emb|CAA57636.1| small
subunit ribosomal protein S28 [Zea mays]
Length = 65
Score = 94.4 bits (233), Expect = 2e-17
Identities = 48/51 (94%), Positives = 49/51 (96%)
Frame = +1
Query: 130 MDSGVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDI 282
MD+ VKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPV EGDI
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDI 51