BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00003412
         (640 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi...    75   2e-11
gb|EOY08837.1| Uncharacterized protein TCM_024078 [Theobroma cacao]    74   4e-11
gb|EOY27713.1| Uncharacterized protein TCM_029495 [Theobroma cacao]    74   5e-11
emb|CAN74029.1| hypothetical protein VITISV_013540 [Vitis vinifera]    73   6e-11
gb|AAG10812.1|AC018460_6 Putative retroelement polyprotein [Arab...    73   8e-11
gb|AAK29467.1| polyprotein-like [Solanum chilense]                     73   8e-11
gb|EOY22757.1| Uncharacterized protein TCM_014834 [Theobroma cacao]    72   1e-10
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...    72   2e-10
gb|EOY19976.1| Retrotransposon protein, unclassified, putative [...    70   4e-10
gb|AAZ41811.1| 01P13-1 [Brassica rapa subsp. pekinensis]               69   1e-09
gb|EOY17849.1| Copia-like retrotransposable element, putative [T...    69   1e-09
emb|CAN80930.1| hypothetical protein VITISV_005279 [Vitis vinifera]    69   1e-09
emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]    68   2e-09
gb|EOY13153.1| Uncharacterized protein TCM_031677 [Theobroma cacao]    68   3e-09
gb|EOY12702.1| Uncharacterized protein TCM_031224 [Theobroma cacao]    68   3e-09
gb|ABR16307.1| unknown [Picea sitchensis]                              68   3e-09
emb|CAN71037.1| hypothetical protein VITISV_011061 [Vitis vinifera]    67   3e-09
gb|AAT38797.2| Polyprotein, putative [Solanum demissum]                67   3e-09
emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera]    67   4e-09
emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]    67   4e-09

>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1499

 Score = 75.1 bits (183), Expect = 2e-11
 Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
 Frame = -1

Query: 247 PQHNGVSERENRTLIEMVXXXXXXXXXXXRWWGKATLTATYILNLIPRKDLN-----WRI 83
           PQ NGV+ER NRTL+EM            ++W +A  T+TY+ N +P K L        I
Sbjct: 614 PQQNGVAERRNRTLVEMARSMIEEKKLSNKFWAEAIATSTYLQNRLPSKSLEKGVTPMEI 673

Query: 82  HFELRNTVSHLRVFGCLCYFHIPKEQR 2
               + +V HL+VFGC+CY HIP E+R
Sbjct: 674 WSGKKPSVDHLKVFGCVCYIHIPDEKR 700


>gb|EOY08837.1| Uncharacterized protein TCM_024078 [Theobroma cacao]
          Length = 703

 Score = 73.9 bits (180), Expect = 4e-11
 Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
 Frame = -1

Query: 247 PQHNGVSERENRTLIEMVXXXXXXXXXXXRWWGKATLTATYILNLIPRKDLN----WRIH 80
           P+ NGVSER+NRT+IEM             +W +AT TA Y+ N++  + +N    + + 
Sbjct: 471 PEQNGVSERKNRTIIEMSRCLLFEKKLPKSFWAEATNTAVYLQNILITQAVNNETPYEVW 530

Query: 79  FELRNTVSHLRVFGCLCYFHIPKEQR 2
           + +R +V HLR+FG +CY H+P E R
Sbjct: 531 YSIRPSVDHLRIFGSICYLHVPDELR 556


>gb|EOY27713.1| Uncharacterized protein TCM_029495 [Theobroma cacao]
          Length = 204

 Score = 73.6 bits (179), Expect = 5e-11
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
 Frame = -1

Query: 244 QHNGVSERENRTLIEMVXXXXXXXXXXXRWWGKATLTATYILNLIPRKDLN----WRIHF 77
           Q NGV ER+NRT++ M             +W KA  T  Y+ N++P K L     +   +
Sbjct: 61  QQNGVCERKNRTILNMARRLLFEKSMPKEFWAKAANTVVYLQNILPTKALEKLTPYEAWY 120

Query: 76  ELRNTVSHLRVFGCLCYFHIPKEQR 2
            ++ TV+HL+VFGC+CY H+PK +R
Sbjct: 121 NVKPTVNHLKVFGCICYVHVPKAKR 145


>emb|CAN74029.1| hypothetical protein VITISV_013540 [Vitis vinifera]
          Length = 894

 Score = 73.2 bits (178), Expect = 6e-11
 Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
 Frame = -1

Query: 247 PQHNGVSERENRTLIEMVXXXXXXXXXXXRWWGKATLTATYILNLIPRKDLNWRIHFE-- 74
           PQ NGVSER+NRT++EM             +W +A  T+ Y+LN +P K L  +  +E  
Sbjct: 188 PQQNGVSERKNRTVMEMARCLLFEKKMPSNFWAEAVNTSVYLLNRLPTKSLKNKTPYEEW 247

Query: 73  --LRNTVSHLRVFGCLCYFHIPKEQR 2
             ++  V+HL++FG +CY+H+P+ +R
Sbjct: 248 YGVKPFVNHLKIFGSICYYHVPEPKR 273


>gb|AAG10812.1|AC018460_6 Putative retroelement polyprotein [Arabidopsis thaliana]
          Length = 1404

 Score = 72.8 bits (177), Expect = 8e-11
 Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
 Frame = -1

Query: 247 PQHNGVSERENRTLIEMVXXXXXXXXXXXRWWGKATLTATYILNLIPRKDLNWRIHFELR 68
           PQ NGV+ER+NR L+E+            R+WG A LTA Y++N  P K L+    FE+ 
Sbjct: 607 PQQNGVAERKNRHLMEVARSMMFHTSVPKRFWGDAVLTACYLINRTPTKVLSDLSPFEVL 666

Query: 67  NT----VSHLRVFGCLCYFHIPKEQR 2
           N     + HLRVFGC+C+  IP EQR
Sbjct: 667 NNTKPFIDHLRVFGCVCFVLIPGEQR 692


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score = 72.8 bits (177), Expect = 8e-11
 Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
 Frame = -1

Query: 247 PQHNGVSERENRTLIEMVXXXXXXXXXXXRWWGKATLTATYILNLIPRKDLNW----RIH 80
           PQHNGV+ER NRT++E V            +WG+A  TA Y++N  P   L +    R+ 
Sbjct: 580 PQHNGVAERMNRTIVEKVRSMLRMAKLPKTFWGEAVRTACYLINRSPSVPLEFDIPERVW 639

Query: 79  FELRNTVSHLRVFGCLCYFHIPKEQR 2
                + SHL+VFGC  + H+PKEQR
Sbjct: 640 TNKEMSYSHLKVFGCKAFAHVPKEQR 665


>gb|EOY22757.1| Uncharacterized protein TCM_014834 [Theobroma cacao]
          Length = 996

 Score = 72.4 bits (176), Expect = 1e-10
 Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
 Frame = -1

Query: 328 CEIRD-KLDSCGEPSSSTNVFYYILDAL---------PQHNGVSERENRTLIEMVXXXXX 179
           C I+  + D+ GE +SS    Y   + +         P+ NGVSER+NRT+IEM      
Sbjct: 373 CRIKKLRTDNGGEYTSSEFTSYLENEGIHHQLTAPYCPEQNGVSERKNRTIIEMSRCLLF 432

Query: 178 XXXXXXRWWGKATLTATYILNLIPRKDLN----WRIHFELRNTVSHLRVFGCLCYFHIPK 11
                  +W KA  TA Y+ N++  + +N    +   +  R +V HLR+FG +CY H+P+
Sbjct: 433 ENKLPKSFWAKAANTAVYLRNILITQAVNNETPYEAWYNTRPSVDHLRIFGSICYLHVPE 492

Query: 10  EQR 2
           E R
Sbjct: 493 ELR 495


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
           protein product [Nicotiana tabacum]
          Length = 1328

 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
 Frame = -1

Query: 247 PQHNGVSERENRTLIEMVXXXXXXXXXXXRWWGKATLTATYILNLIPRKDLNW----RIH 80
           PQHNGV+ER NRT++E V            +WG+A  TA Y++N  P   L +    R+ 
Sbjct: 579 PQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVW 638

Query: 79  FELRNTVSHLRVFGCLCYFHIPKEQR 2
                + SHL+VFGC  + H+PKEQR
Sbjct: 639 TNKEVSYSHLKVFGCRAFAHVPKEQR 664


>gb|EOY19976.1| Retrotransposon protein, unclassified, putative [Theobroma cacao]
          Length = 989

 Score = 70.5 bits (171), Expect = 4e-10
 Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
 Frame = -1

Query: 247 PQHNGVSERENRTLIEMVXXXXXXXXXXXRWWGKATLTATYILNLIPRKDLNWRIHFEL- 71
           PQ NG SER+NRT++EM             +W +A  TA Y+LN+   + LN++  +E+ 
Sbjct: 413 PQQNGASERKNRTVVEMARCLLFQNNLPRVFWAEAVNTANYLLNITYTRVLNFKTPYEMW 472

Query: 70  ---RNTVSHLRVFGCLCYFHIPKEQR 2
              + + +HL+ FGC+CY  +P E+R
Sbjct: 473 FACKPSAAHLKTFGCVCYAKVPDEKR 498


>gb|AAZ41811.1| 01P13-1 [Brassica rapa subsp. pekinensis]
          Length = 1545

 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
 Frame = -1

Query: 247 PQHNGVSERENRTLIEMVXXXXXXXXXXXRWWGKATLTATYILNLIPRKDLNWRIHFELR 68
           PQ NGV+ER+NR L+E+            R+W  A +TA Y++N IP + L  +  FE+ 
Sbjct: 683 PQQNGVAERKNRHLMEVSRSMMFHKGVPKRYWSDAVMTACYLINRIPTRILADQSPFEVL 742

Query: 67  N----TVSHLRVFGCLCYFHIPKEQR 2
           N     + HLR FGC+CY  +P EQR
Sbjct: 743 NKSRPVLDHLRTFGCVCYVLVPGEQR 768


>gb|EOY17849.1| Copia-like retrotransposable element, putative [Theobroma cacao]
          Length = 1090

 Score = 68.6 bits (166), Expect = 1e-09
 Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
 Frame = -1

Query: 328 CEIRD-KLDSCGEPSSSTNVFYYILDAL---------PQHNGVSERENRTLIEMVXXXXX 179
           C I+  + D+ GE +SS  + Y   + +         P+ NGVSER+NRT+IEM      
Sbjct: 511 CRIKKLRTDNGGEYTSSEFISYLENEGIHHQLTAPYCPEQNGVSERKNRTIIEMSRCFLF 570

Query: 178 XXXXXXRWWGKATLTATYILNLIPRKDLN----WRIHFELRNTVSHLRVFGCLCYFHIPK 11
                  +W ++  TA Y+ N++  + +N    +   +  R +V HLR+F  +CY H+P+
Sbjct: 571 KKKLPKSFWAESANTAVYLQNILITQAVNNETPYEAWYSTRPSVDHLRIFASICYLHVPE 630

Query: 10  EQR 2
           E R
Sbjct: 631 ELR 633


>emb|CAN80930.1| hypothetical protein VITISV_005279 [Vitis vinifera]
          Length = 1291

 Score = 68.6 bits (166), Expect = 1e-09
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
 Frame = -1

Query: 247 PQHNGVSERENRTLIEMVXXXXXXXXXXXRWWGKATLTATYILNLIPRKDLNWRIHFE-- 74
           PQ NGVSER+NRT++EM              W +A  T+ Y+LN +P K +  +   E  
Sbjct: 598 PQQNGVSERKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIEAW 657

Query: 73  --LRNTVSHLRVFGCLCYFHIPKEQR 2
             ++ +V HL+VFG  CY H+P  +R
Sbjct: 658 SGVKPSVKHLKVFGSFCYLHVPSVKR 683


>emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]
          Length = 2041

 Score = 68.2 bits (165), Expect = 2e-09
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
 Frame = -1

Query: 247  PQHNGVSERENRTLIEMVXXXXXXXXXXXRWWGKATLTATYILNLIPRKDLNWRIHFE-- 74
            PQ NGVSER+NRT++EM              W +A  T+ Y+LN +P K +  +   E  
Sbjct: 1336 PQXNGVSERKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIEAW 1395

Query: 73   --LRNTVSHLRVFGCLCYFHIPKEQR 2
              ++ +V HL+VFG  CY H+P  +R
Sbjct: 1396 SGVKPSVKHLKVFGSFCYLHVPSVKR 1421


>gb|EOY13153.1| Uncharacterized protein TCM_031677 [Theobroma cacao]
          Length = 1061

 Score = 67.8 bits (164), Expect = 3e-09
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
 Frame = -1

Query: 247 PQHNGVSERENRTLIEMVXXXXXXXXXXXRWWGKATLTATYILNLIPRKDL----NWRIH 80
           PQ NG SER+NRT++EM              W +A  TA Y+LN+   + L     +   
Sbjct: 544 PQQNGTSERKNRTIMEMARCLLFEMSLPKYLWAEAANTANYLLNIAQTRALPNKTPYEAW 603

Query: 79  FELRNTVSHLRVFGCLCYFHIPKEQR 2
           F+++  ++HLRVFGC+CY  +P  +R
Sbjct: 604 FDVKPAINHLRVFGCICYSKVPDAKR 629


>gb|EOY12702.1| Uncharacterized protein TCM_031224 [Theobroma cacao]
          Length = 3109

 Score = 67.8 bits (164), Expect = 3e-09
 Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
 Frame = -1

Query: 247 PQHNGVSERENRTLIEMVXXXXXXXXXXXRWWGKATLTATYILNLIPRKDLNWRIHFE-- 74
           PQ NGV ER+NRTLIEM             +W +AT  +  +LN++P K L  +  +E  
Sbjct: 402 PQQNGVCERKNRTLIEMARCLLYEKGLPKSFWAEATNASVCLLNILPTKALTSQSPYEAW 461

Query: 73  --LRNTVSHLRVFGCLCYFHIPKEQR 2
             L+ ++  L+VFGC+CY  IP E+R
Sbjct: 462 HGLKPSIVGLKVFGCVCYAKIPDEKR 487


>gb|ABR16307.1| unknown [Picea sitchensis]
          Length = 407

 Score = 67.8 bits (164), Expect = 3e-09
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
 Frame = -1

Query: 247 PQHNGVSERENRTLIEMVXXXXXXXXXXXRWWGKATLTATYILNLIPRKDLNWRIHFEL- 71
           PQ NGV+ER+NRTL+EM            ++W +A  TATYI+N  P   +  +   E  
Sbjct: 232 PQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAW 291

Query: 70  ---RNTVSHLRVFGCLCYFHIPKEQR 2
              + TVSH +VFGC  Y HIP E+R
Sbjct: 292 SRRKPTVSHFKVFGCDVYVHIPDEKR 317


>emb|CAN71037.1| hypothetical protein VITISV_011061 [Vitis vinifera]
          Length = 1220

 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
 Frame = -1

Query: 250 LPQHNGVSERENRTLIEMVXXXXXXXXXXXRWWGKATLTATYILNLIPRKDLNWRIHFE- 74
           LPQ N VSER+N+T++EM              W +A  T+ Y+LN +P K +  +   E 
Sbjct: 581 LPQQNEVSERKNKTVMEMARCMLFEKRLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIEA 640

Query: 73  ---LRNTVSHLRVFGCLCYFHIPKEQR 2
              ++ +V HL+VFG LCY H+P  +R
Sbjct: 641 WFGVKPSVKHLKVFGSLCYLHVPSVKR 667


>gb|AAT38797.2| Polyprotein, putative [Solanum demissum]
          Length = 1793

 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
 Frame = -1

Query: 247 PQHNGVSERENRTLIEMVXXXXXXXXXXXRWWGKATLTATYILNLIPRKDLNWRIHFEL- 71
           PQ NGVSER+NRT++EM            ++  +A  T+ Y+LN +P K L     +E  
Sbjct: 726 PQQNGVSERKNRTVMEMARCLLLERKIPNQFLAEAINTSVYLLNRLPTKALQDMTPYEAW 785

Query: 70  ---RNTVSHLRVFGCLCYFHIPKEQR 2
              + +V HLR+FGC CY+ +PK +R
Sbjct: 786 CGNKPSVHHLRIFGCKCYYRVPKTKR 811


>emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera]
          Length = 1424

 Score = 67.0 bits (162), Expect = 4e-09
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
 Frame = -1

Query: 247 PQHNGVSERENRTLIEMVXXXXXXXXXXXRWWGKATLTATYILNLIPRKDLNWRIHFEL- 71
           PQ NGV ER+N+T++EM             +W +A  TA Y+LN  P K L  +   E  
Sbjct: 690 PQQNGVVERKNQTVMEMAKAMLYEKGLPKIFWAEAVNTAVYLLNRCPTKALLNKTPIEAW 749

Query: 70  ---RNTVSHLRVFGCLCYFHIPKEQR 2
              + +V H +VFGCLCY  +PK++R
Sbjct: 750 SGRKPSVRHFKVFGCLCYSQVPKQRR 775


>emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]
          Length = 1269

 Score = 67.0 bits (162), Expect = 4e-09
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
 Frame = -1

Query: 247 PQHNGVSERENRTLIEMVXXXXXXXXXXXRWWGKATLTATYILNLIPRKDLNWRIHFE-- 74
           PQ NGVS+R+NRT++EM              W +A  T+ Y+LN +P K +  +   E  
Sbjct: 603 PQQNGVSKRKNRTVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIEAW 662

Query: 73  --LRNTVSHLRVFGCLCYFHIPKEQR 2
             ++ +V HL+VFG  CY H+P  +R
Sbjct: 663 SGVKPSVKHLKVFGSFCYLHVPSVKR 688