BLASTX nr result

ID: Ephedra26_contig00003197 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00003197
         (1529 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306943.1| hypothetical protein POPTR_0005s26320g [Popu...    60   2e-06

>ref|XP_002306943.1| hypothetical protein POPTR_0005s26320g [Populus trichocarpa]
           gi|222856392|gb|EEE93939.1| hypothetical protein
           POPTR_0005s26320g [Populus trichocarpa]
          Length = 256

 Score = 60.1 bits (144), Expect = 2e-06
 Identities = 48/149 (32%), Positives = 67/149 (44%), Gaps = 1/149 (0%)
 Frame = +1

Query: 199 SASKVIDANNDFGFSHLRIMSASTKDIAS-KNEDIFDNLGQMLAPDPHVLPKGFSKSQGQ 375
           SA++  +   D   +  +    +TK +   K + +       L PDP  LPK  SK    
Sbjct: 125 SATRKTNRPRDQSLTPKKSKQPNTKKVEEPKEQSLIIGSTVPLGPDPKDLPKDVSKVLSS 184

Query: 376 LKSAISNSCQVTTDLNLYSLLDFNSNGVNNSAFCNSPHPSALPLPKFSVRPAVRKQSSEV 555
             + +S +  + + + +     F+      SAF  SPHPS+LPLPKFS+RP   K S   
Sbjct: 185 SSATVSGNGVINSTVLMEDFEKFSG-----SAFALSPHPSSLPLPKFSMRP---KLSCSA 236

Query: 556 EIDKPATRKSSEVEIDKSATRNLRRLLHL 642
           E             ID  AT NLRRLL L
Sbjct: 237 E----------AAGIDAGATDNLRRLLRL 255


Top