BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00003177
         (2440 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_001770727.1| predicted protein [Physcomitrella patens] gi...   182   6e-43
ref|XP_005842382.1| hypothetical protein GUITHDRAFT_83772 [Guill...    79   9e-12
gb|ETW03462.1| hypothetical protein, variant [Aphanomyces invadans]    79   1e-11
gb|ETW03461.1| hypothetical protein H310_04918 [Aphanomyces inva...    79   1e-11
gb|ELW70170.1| DNA polymerase sigma [Tupaia chinensis]                 78   2e-11
gb|ETV85174.1| hypothetical protein, variant 2 [Aphanomyces asta...    77   5e-11
gb|ETV85173.1| hypothetical protein, variant 1 [Aphanomyces astaci]    77   5e-11
gb|ETV85172.1| hypothetical protein H257_03008 [Aphanomyces astaci]    77   5e-11
ref|XP_006517250.1| PREDICTED: DNA polymerase sigma isoform X3 [...    77   5e-11
ref|XP_006517249.1| PREDICTED: DNA polymerase sigma isoform X2 [...    77   5e-11
ref|XP_006517248.1| PREDICTED: DNA polymerase sigma isoform X1 [...    77   5e-11
ref|XP_005248291.1| PREDICTED: DNA polymerase sigma isoform X1 [...    77   5e-11
sp|Q5XG87.3|PAPD7_HUMAN RecName: Full=Non-canonical poly(A) RNA ...    77   5e-11
gb|AAD45198.1|AF089896_1 topoisomerase-related function protein ...    77   5e-11
ref|XP_003899535.1| PREDICTED: DNA polymerase sigma [Papio anubis]     77   5e-11
ref|XP_003800943.1| PREDICTED: DNA polymerase sigma [Otolemur ga...    77   5e-11
ref|XP_006143387.1| PREDICTED: DNA polymerase sigma [Tupaia chin...    75   1e-10
ref|XP_006806721.1| PREDICTED: DNA polymerase sigma-like isoform...    75   1e-10
ref|XP_006806722.1| PREDICTED: DNA polymerase sigma-like isoform...    75   1e-10
gb|ETP31939.1| hypothetical protein F442_19262 [Phytophthora par...    75   1e-10

>ref|XP_001770727.1| predicted protein [Physcomitrella patens] gi|162677945|gb|EDQ64409.1|
            predicted protein [Physcomitrella patens]
          Length = 1560

 Score =  182 bits (462), Expect = 6e-43
 Identities = 144/448 (32%), Positives = 203/448 (45%), Gaps = 74/448 (16%)
 Frame = +3

Query: 1275 PAAEF--NLYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFA 1448
            P+ +F  N+  LH EILE+A    P+ E  +  EAA++CVR AVK LWP  D+EV+GS+A
Sbjct: 1028 PSQQFLTNVEELHSEILEFAHTASPSAEARSCAEAAIDCVRGAVKKLWPNADVEVFGSYA 1087

Query: 1449 TGLCLSKSDVDLLVVNEXXXXXXXXETSGRPPQL--------ITVLGDHIRKYPWCKSLM 1604
            TGLCLS SDVD++VV+          T     +L        I +LG  ++ Y WCKS+ 
Sbjct: 1088 TGLCLSHSDVDVVVVDAPPPLKLPDTTGLTGTRLVASLLAPSIRLLGAALQDYDWCKSIR 1147

Query: 1605 TVENAPIPVIKLNCKPQINGEECKEEDSDNVVAIDITIQG---NTEV------------- 1736
            T+++A +PVIKL C+P +       + +  VV IDITI G   N E              
Sbjct: 1148 TIDSATMPVIKLQCRPLVT----SLDPAAPVVKIDITIGGKKTNEEAVATASQSSEGSET 1203

Query: 1737 -------YKEKRYCHTGVQAREFVLHKLKQFXXXXXXXXXXXXXXXXXXXNNVXXXXXXX 1895
                   ++  R  H G  ARE+V+ +L+Q                     +V       
Sbjct: 1204 SRHVDSQFELARKFHNGAAAREYVIKRLQQQPALAPLVLLLKSYLQSKGLKDVYTGGLGS 1263

Query: 1896 XXXXXXXXFFLEHVLEPYLCLRRSQ---ESVEDNYALGQDTSNMP-------------LK 2027
                    F+LE V  P  C+   +   +S+  + AL   TS+               L 
Sbjct: 1264 FSLTIMLVFYLERV--PISCVTSQEVRAQSLAPSNALVSSTSSPDITNLTSAPPGIDFLG 1321

Query: 2028 SEEHPSLCSSKEDSETAIDSRKFC---------YNGGTTIRN----------------AI 2132
            S E  S CS+      ++ +R             NG T   +                  
Sbjct: 1322 SCEEESSCSTTTTDSVSVSNRASASCSTSEGSLVNGATAAGHIQLTGDVSKSGRCNQWTG 1381

Query: 2133 NVIEKQLEHNEVSGSLNLGALLISFLHYYTICMDFRRVRIVLQGRDGSRGGLYWQDESQH 2312
             +IE+ L       S NLG LLI FL  +   +DF +VR+V +G  GS GGL++ D++  
Sbjct: 1382 GIIEQLLASMHYVASPNLGTLLIGFLQIFGWAIDFTQVRLVTKGNGGS-GGLFYHDKTS- 1439

Query: 2313 HPFALWIDDPLRPGVNVGAGSYAMCHVQ 2396
             P  L IDDPLRPG N+GAGS+ M  VQ
Sbjct: 1440 SPAPLTIDDPLRPGANIGAGSFNMHQVQ 1467


>ref|XP_005842382.1| hypothetical protein GUITHDRAFT_83772 [Guillardia theta CCMP2712]
            gi|428186552|gb|EKX55402.1| hypothetical protein
            GUITHDRAFT_83772 [Guillardia theta CCMP2712]
          Length = 440

 Score = 79.0 bits (193), Expect = 9e-12
 Identities = 42/114 (36%), Positives = 59/114 (51%)
 Frame = +3

Query: 1302 LHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVD 1481
            LH EI+E    V P   T  R +  V+ V +AVKS W    +EVYGSF+T L L  SDVD
Sbjct: 97   LHSEIVELLNQVYPTNSTRTRRQRIVDLVDEAVKSCWEGAHVEVYGSFSTDLYLPHSDVD 156

Query: 1482 LLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCKSLMTVENAPIPVIKLN 1643
            +LV+                   +  L   ++  PWC+ + ++EN  +PVIKL+
Sbjct: 157  VLVIGAKEWSI---------ESKMKHLASRLKSMPWCRYMRSIENTSVPVIKLS 201


>gb|ETW03462.1| hypothetical protein, variant [Aphanomyces invadans]
          Length = 540

 Score = 78.6 bits (192), Expect = 1e-11
 Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 1/163 (0%)
 Frame = +3

Query: 1302 LHDEILEYARMVKPN-QETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 1478
            LH EI+EYAR  +    E    +E  +E VR +V+ LWP   +E YGS++TG+ L  SD+
Sbjct: 63   LHQEIVEYARYTRAIVSEMAVHIEKTIELVRTSVRKLWPEATVETYGSYSTGIWLPSSDI 122

Query: 1479 DLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCKSLMTVENAPIPVIKLNCKPQI 1658
            DL+++           TS      +  L   ++   W +S++ VE+A +P++KL      
Sbjct: 123  DLVILG----------TSDDASANLKRLAASLKHEKWVESILLVESAKVPLLKL------ 166

Query: 1659 NGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFV 1787
                     +D+ V IDIT         E    H+G+ AR+ +
Sbjct: 167  -------VSTDSSVPIDITF--------ESANTHSGLLARDLI 194


>gb|ETW03461.1| hypothetical protein H310_04918 [Aphanomyces invadans]
          Length = 580

 Score = 78.6 bits (192), Expect = 1e-11
 Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 1/163 (0%)
 Frame = +3

Query: 1302 LHDEILEYARMVKPN-QETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 1478
            LH EI+EYAR  +    E    +E  +E VR +V+ LWP   +E YGS++TG+ L  SD+
Sbjct: 103  LHQEIVEYARYTRAIVSEMAVHIEKTIELVRTSVRKLWPEATVETYGSYSTGIWLPSSDI 162

Query: 1479 DLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCKSLMTVENAPIPVIKLNCKPQI 1658
            DL+++           TS      +  L   ++   W +S++ VE+A +P++KL      
Sbjct: 163  DLVILG----------TSDDASANLKRLAASLKHEKWVESILLVESAKVPLLKL------ 206

Query: 1659 NGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFV 1787
                     +D+ V IDIT         E    H+G+ AR+ +
Sbjct: 207  -------VSTDSSVPIDITF--------ESANTHSGLLARDLI 234


>gb|ELW70170.1| DNA polymerase sigma [Tupaia chinensis]
          Length = 729

 Score = 77.8 bits (190), Expect = 2e-11
 Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 2/172 (1%)
 Frame = +3

Query: 1299 GLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 1478
            GLH+EI+++   + P  E  A     V+ +   VK LWPA D++++GSF+TGL L  SD+
Sbjct: 56   GLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPAADVQIFGSFSTGLYLPTSDI 115

Query: 1479 DLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCK--SLMTVENAPIPVIKLNCKP 1652
            DL+V  +            RPP  + +L   +RK+   +  S+  ++ A +P+IKL    
Sbjct: 116  DLVVFGKWE----------RPP--LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLT--- 160

Query: 1653 QINGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1808
                      D +  V +DI+               TGV+A EF+ + +K++
Sbjct: 161  ----------DQETEVKVDISFN-----------METGVRAAEFIKNYMKKY 191


>gb|ETV85174.1| hypothetical protein, variant 2 [Aphanomyces astaci]
            gi|574119696|gb|ETV85175.1| hypothetical protein, variant
            3 [Aphanomyces astaci]
          Length = 470

 Score = 76.6 bits (187), Expect = 5e-11
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 1/163 (0%)
 Frame = +3

Query: 1302 LHDEILEYARMVKPN-QETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 1478
            LH EI++YAR  +    E    +E  ++ VR +V+ LWP   +E YGS++TG+ L  SD+
Sbjct: 4    LHQEIVDYARYTRAIVSEMAVHIEKTIDLVRASVRKLWPDATVETYGSYSTGIWLPSSDI 63

Query: 1479 DLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCKSLMTVENAPIPVIKLNCKPQI 1658
            DL+++           TS      +  L   ++   W +S++ VE+A +P++KL      
Sbjct: 64   DLVILG----------TSDDASSHLKCLAASLKHEKWVESILLVESAKVPLLKL------ 107

Query: 1659 NGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFV 1787
                     +D+ V IDIT         E    H+G+ AR+ +
Sbjct: 108  -------VSTDSSVPIDITF--------ETANTHSGLLARDLI 135


>gb|ETV85173.1| hypothetical protein, variant 1 [Aphanomyces astaci]
          Length = 490

 Score = 76.6 bits (187), Expect = 5e-11
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 1/163 (0%)
 Frame = +3

Query: 1302 LHDEILEYARMVKPN-QETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 1478
            LH EI++YAR  +    E    +E  ++ VR +V+ LWP   +E YGS++TG+ L  SD+
Sbjct: 24   LHQEIVDYARYTRAIVSEMAVHIEKTIDLVRASVRKLWPDATVETYGSYSTGIWLPSSDI 83

Query: 1479 DLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCKSLMTVENAPIPVIKLNCKPQI 1658
            DL+++           TS      +  L   ++   W +S++ VE+A +P++KL      
Sbjct: 84   DLVILG----------TSDDASSHLKCLAASLKHEKWVESILLVESAKVPLLKL------ 127

Query: 1659 NGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFV 1787
                     +D+ V IDIT         E    H+G+ AR+ +
Sbjct: 128  -------VSTDSSVPIDITF--------ETANTHSGLLARDLI 155


>gb|ETV85172.1| hypothetical protein H257_03008 [Aphanomyces astaci]
          Length = 575

 Score = 76.6 bits (187), Expect = 5e-11
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 1/163 (0%)
 Frame = +3

Query: 1302 LHDEILEYARMVKPN-QETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 1478
            LH EI++YAR  +    E    +E  ++ VR +V+ LWP   +E YGS++TG+ L  SD+
Sbjct: 109  LHQEIVDYARYTRAIVSEMAVHIEKTIDLVRASVRKLWPDATVETYGSYSTGIWLPSSDI 168

Query: 1479 DLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCKSLMTVENAPIPVIKLNCKPQI 1658
            DL+++           TS      +  L   ++   W +S++ VE+A +P++KL      
Sbjct: 169  DLVILG----------TSDDASSHLKCLAASLKHEKWVESILLVESAKVPLLKL------ 212

Query: 1659 NGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFV 1787
                     +D+ V IDIT         E    H+G+ AR+ +
Sbjct: 213  -------VSTDSSVPIDITF--------ETANTHSGLLARDLI 240


>ref|XP_006517250.1| PREDICTED: DNA polymerase sigma isoform X3 [Mus musculus]
          Length = 732

 Score = 76.6 bits (187), Expect = 5e-11
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
 Frame = +3

Query: 1293 LYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKS 1472
            + GLH+EI+++   + P  E  A     V+ +   VK LWP  D++++GSF+TGL L  S
Sbjct: 230  IQGLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTS 289

Query: 1473 DVDLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCK--SLMTVENAPIPVIKLNC 1646
            D+DL+V  +            RPP  + +L   +RK+   +  S+  ++ A +P+IKL  
Sbjct: 290  DIDLVVFGKWE----------RPP--LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLT- 336

Query: 1647 KPQINGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1808
                        D +  V +DI+               TGV+A EF+ + +K++
Sbjct: 337  ------------DQETEVKVDISFN-----------METGVRAAEFIKNYMKKY 367


>ref|XP_006517249.1| PREDICTED: DNA polymerase sigma isoform X2 [Mus musculus]
          Length = 784

 Score = 76.6 bits (187), Expect = 5e-11
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
 Frame = +3

Query: 1293 LYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKS 1472
            + GLH+EI+++   + P  E  A     V+ +   VK LWP  D++++GSF+TGL L  S
Sbjct: 230  IQGLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTS 289

Query: 1473 DVDLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCK--SLMTVENAPIPVIKLNC 1646
            D+DL+V  +            RPP  + +L   +RK+   +  S+  ++ A +P+IKL  
Sbjct: 290  DIDLVVFGKWE----------RPP--LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLT- 336

Query: 1647 KPQINGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1808
                        D +  V +DI+               TGV+A EF+ + +K++
Sbjct: 337  ------------DQETEVKVDISFN-----------METGVRAAEFIKNYMKKY 367


>ref|XP_006517248.1| PREDICTED: DNA polymerase sigma isoform X1 [Mus musculus]
          Length = 785

 Score = 76.6 bits (187), Expect = 5e-11
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
 Frame = +3

Query: 1293 LYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKS 1472
            + GLH+EI+++   + P  E  A     V+ +   VK LWP  D++++GSF+TGL L  S
Sbjct: 230  IQGLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTS 289

Query: 1473 DVDLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCK--SLMTVENAPIPVIKLNC 1646
            D+DL+V  +            RPP  + +L   +RK+   +  S+  ++ A +P+IKL  
Sbjct: 290  DIDLVVFGKWE----------RPP--LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLT- 336

Query: 1647 KPQINGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1808
                        D +  V +DI+               TGV+A EF+ + +K++
Sbjct: 337  ------------DQETEVKVDISFN-----------METGVRAAEFIKNYMKKY 367


>ref|XP_005248291.1| PREDICTED: DNA polymerase sigma isoform X1 [Homo sapiens]
          Length = 792

 Score = 76.6 bits (187), Expect = 5e-11
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
 Frame = +3

Query: 1293 LYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKS 1472
            + GLH+EI+++   + P  E  A     V+ +   VK LWP  D++++GSF+TGL L  S
Sbjct: 237  IQGLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTS 296

Query: 1473 DVDLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCK--SLMTVENAPIPVIKLNC 1646
            D+DL+V  +            RPP  + +L   +RK+   +  S+  ++ A +P+IKL  
Sbjct: 297  DIDLVVFGKWE----------RPP--LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLT- 343

Query: 1647 KPQINGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1808
                        D +  V +DI+               TGV+A EF+ + +K++
Sbjct: 344  ------------DQETEVKVDISFN-----------METGVRAAEFIKNYMKKY 374


>sp|Q5XG87.3|PAPD7_HUMAN RecName: Full=Non-canonical poly(A) RNA polymerase PAPD7; AltName:
            Full=DNA polymerase sigma; AltName: Full=LAK-1; AltName:
            Full=PAP-associated domain-containing protein 7; AltName:
            Full=TRAMP-like complex polyadenylate polymerase;
            AltName: Full=Terminal uridylyltransferase 5;
            Short=TUTase 5; AltName: Full=Topoisomerase-related
            function protein 4-1; Short=TRF4-1
            gi|449326076|gb|AGE92663.1| PAPD7 [Homo sapiens]
          Length = 772

 Score = 76.6 bits (187), Expect = 5e-11
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
 Frame = +3

Query: 1293 LYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKS 1472
            + GLH+EI+++   + P  E  A     V+ +   VK LWP  D++++GSF+TGL L  S
Sbjct: 217  IQGLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTS 276

Query: 1473 DVDLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCK--SLMTVENAPIPVIKLNC 1646
            D+DL+V  +            RPP  + +L   +RK+   +  S+  ++ A +P+IKL  
Sbjct: 277  DIDLVVFGKWE----------RPP--LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLT- 323

Query: 1647 KPQINGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1808
                        D +  V +DI+               TGV+A EF+ + +K++
Sbjct: 324  ------------DQETEVKVDISFN-----------METGVRAAEFIKNYMKKY 354


>gb|AAD45198.1|AF089896_1 topoisomerase-related function protein [Homo sapiens]
          Length = 517

 Score = 76.6 bits (187), Expect = 5e-11
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
 Frame = +3

Query: 1293 LYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKS 1472
            + GLH+EI+++   + P  E  A     V+ +   VK LWP  D++++GSF+TGL L  S
Sbjct: 27   IQGLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTS 86

Query: 1473 DVDLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCK--SLMTVENAPIPVIKLNC 1646
            D+DL+V  +            RPP  + +L   +RK+   +  S+  ++ A +P+IKL  
Sbjct: 87   DIDLVVFGKWE----------RPP--LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLT- 133

Query: 1647 KPQINGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1808
                        D +  V +DI+               TGV+A EF+ + +K++
Sbjct: 134  ------------DQETEVKVDISFN-----------METGVRAAEFIKNYMKKY 164


>ref|XP_003899535.1| PREDICTED: DNA polymerase sigma [Papio anubis]
          Length = 775

 Score = 76.6 bits (187), Expect = 5e-11
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
 Frame = +3

Query: 1293 LYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKS 1472
            + GLH+EI+++   + P  E  A     V+ +   VK LWP  D++++GSF+TGL L  S
Sbjct: 220  IQGLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTS 279

Query: 1473 DVDLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCK--SLMTVENAPIPVIKLNC 1646
            D+DL+V  +            RPP  + +L   +RK+   +  S+  ++ A +P+IKL  
Sbjct: 280  DIDLVVFGKWE----------RPP--LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLT- 326

Query: 1647 KPQINGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1808
                        D +  V +DI+               TGV+A EF+ + +K++
Sbjct: 327  ------------DQETEVKVDISFN-----------METGVRAAEFIKNYMKKY 357


>ref|XP_003800943.1| PREDICTED: DNA polymerase sigma [Otolemur garnettii]
          Length = 837

 Score = 76.6 bits (187), Expect = 5e-11
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
 Frame = +3

Query: 1293 LYGLHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKS 1472
            + GLH+EI+++   + P  E  A     V+ +   VK LWP  D++++GSF+TGL L  S
Sbjct: 282  IQGLHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTS 341

Query: 1473 DVDLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCK--SLMTVENAPIPVIKLNC 1646
            D+DL+V  +            RPP  + +L   +RK+   +  S+  ++ A +P+IKL  
Sbjct: 342  DIDLVVFGKWE----------RPP--LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLT- 388

Query: 1647 KPQINGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1808
                        D +  V +DI+               TGV+A EF+ + +K++
Sbjct: 389  ------------DQETEVKVDISFN-----------METGVRAAEFIKNYMKKY 419


>ref|XP_006143387.1| PREDICTED: DNA polymerase sigma [Tupaia chinensis]
          Length = 565

 Score = 75.5 bits (184), Expect = 1e-10
 Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 2/171 (1%)
 Frame = +3

Query: 1302 LHDEILEYARMVKPNQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVD 1481
            LH+EI+++   + P  E  A     V+ +   VK LWPA D++++GSF+TGL L  SD+D
Sbjct: 13   LHEEIIDFYNFMSPCPEEAAMRREVVKRIETVVKDLWPAADVQIFGSFSTGLYLPTSDID 72

Query: 1482 LLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCK--SLMTVENAPIPVIKLNCKPQ 1655
            L+V  +            RPP  + +L   +RK+   +  S+  ++ A +P+IKL     
Sbjct: 73   LVVFGKWE----------RPP--LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLT---- 116

Query: 1656 INGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1808
                     D +  V +DI+               TGV+A EF+ + +K++
Sbjct: 117  ---------DQETEVKVDISFN-----------METGVRAAEFIKNYMKKY 147


>ref|XP_006806721.1| PREDICTED: DNA polymerase sigma-like isoform X1 [Neolamprologus
            brichardi]
          Length = 817

 Score = 75.1 bits (183), Expect(2) = 1e-10
 Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 2/217 (0%)
 Frame = +3

Query: 1164 RKPDSNSSQHNLTRSSSMNFNYTINPGISSVPMYNFFPAAEFNLYGLHDEILEYARMVKP 1343
            RK D+ +S + +  S S   N       +     ++ P     + GLH+E++++ + + P
Sbjct: 232  RKSDNKASTYGMNYSISNCTNGNYASTCTPWKTRDYSPG----VLGLHEEVMDFYKYISP 287

Query: 1344 NQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVDLLVVNEXXXXXXXX 1523
              E  A  +  V  +   +K LWP  D+++YGSF+TGL L  SD+DL+V  +        
Sbjct: 288  RPEEAAMRKEVVNRIEVVIKELWPTVDVQIYGSFSTGLYLPTSDIDLMVTGKWE------ 341

Query: 1524 ETSGRPPQLITVLGDHIRKYPWC--KSLMTVENAPIPVIKLNCKPQINGEECKEEDSDNV 1697
                RPP  +  L   +RK+      S+  ++ A +P+IKL               +D  
Sbjct: 342  ----RPP--LQELEQALRKHEVADPNSIKVLDKATVPIIKL---------------TDQR 380

Query: 1698 VAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1808
              + + I  N E         TGV+A  F+   +K++
Sbjct: 381  TDVKVDISFNVE---------TGVKAASFIKGYMKKY 408



 Score = 20.4 bits (41), Expect(2) = 1e-10
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +1

Query: 1006 NLKNYRVPQWYYYHQFSVFLHKLHGIHRMAFN*TPHLHTP 1125
            NL ++R PQ +   +        H +H       PH H P
Sbjct: 190  NLYHHRHPQEHQAFKLQQICVNQHQVHPSVPINQPHSHHP 229


>ref|XP_006806722.1| PREDICTED: DNA polymerase sigma-like isoform X2 [Neolamprologus
            brichardi]
          Length = 777

 Score = 75.1 bits (183), Expect(2) = 1e-10
 Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 2/217 (0%)
 Frame = +3

Query: 1164 RKPDSNSSQHNLTRSSSMNFNYTINPGISSVPMYNFFPAAEFNLYGLHDEILEYARMVKP 1343
            RK D+ +S + +  S S   N       +     ++ P     + GLH+E++++ + + P
Sbjct: 232  RKSDNKASTYGMNYSISNCTNGNYASTCTPWKTRDYSPG----VLGLHEEVMDFYKYISP 287

Query: 1344 NQETYARVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDVDLLVVNEXXXXXXXX 1523
              E  A  +  V  +   +K LWP  D+++YGSF+TGL L  SD+DL+V  +        
Sbjct: 288  RPEEAAMRKEVVNRIEVVIKELWPTVDVQIYGSFSTGLYLPTSDIDLMVTGKWE------ 341

Query: 1524 ETSGRPPQLITVLGDHIRKYPWC--KSLMTVENAPIPVIKLNCKPQINGEECKEEDSDNV 1697
                RPP  +  L   +RK+      S+  ++ A +P+IKL               +D  
Sbjct: 342  ----RPP--LQELEQALRKHEVADPNSIKVLDKATVPIIKL---------------TDQR 380

Query: 1698 VAIDITIQGNTEVYKEKRYCHTGVQAREFVLHKLKQF 1808
              + + I  N E         TGV+A  F+   +K++
Sbjct: 381  TDVKVDISFNVE---------TGVKAASFIKGYMKKY 408



 Score = 20.4 bits (41), Expect(2) = 1e-10
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +1

Query: 1006 NLKNYRVPQWYYYHQFSVFLHKLHGIHRMAFN*TPHLHTP 1125
            NL ++R PQ +   +        H +H       PH H P
Sbjct: 190  NLYHHRHPQEHQAFKLQQICVNQHQVHPSVPINQPHSHHP 229


>gb|ETP31939.1| hypothetical protein F442_19262 [Phytophthora parasitica P10297]
          Length = 640

 Score = 75.1 bits (183), Expect = 1e-10
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 1/163 (0%)
 Frame = +3

Query: 1302 LHDEILEYARMVKPNQETYA-RVEAAVECVRQAVKSLWPAKDIEVYGSFATGLCLSKSDV 1478
            LH+EIL Y +  K   +T A  +E  +  VR +V+SLWP   +E +GS++TG+ L  SDV
Sbjct: 144  LHEEILAYTKYTKETVDTMAVHIEQMIANVRASVQSLWPQSKVETFGSYSTGIWLPSSDV 203

Query: 1479 DLLVVNEXXXXXXXXETSGRPPQLITVLGDHIRKYPWCKSLMTVENAPIPVIKLNCKPQI 1658
            DL+++ +         T+    QL  VL     K  W +SL+ ++ A +PV+KL      
Sbjct: 204  DLVIL-DVVEVNDSKLTAKHLRQLAKVL----EKKKWVESLLCLDTAKVPVLKL------ 252

Query: 1659 NGEECKEEDSDNVVAIDITIQGNTEVYKEKRYCHTGVQAREFV 1787
                     ++  V IDIT         E    H+G+ AR+ +
Sbjct: 253  -------VSAETSVPIDITF--------ESAATHSGLLARDLI 280