BLASTX nr result
ID: Ephedra26_contig00003060
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00003060
(2591 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 686 0.0
gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro... 664 0.0
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 662 0.0
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 661 0.0
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis... 659 0.0
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps... 655 0.0
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 655 0.0
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha... 654 0.0
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 652 0.0
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 652 0.0
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 650 0.0
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 650 0.0
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali... 650 0.0
gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tu... 648 0.0
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall... 647 0.0
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu... 647 0.0
gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tu... 647 0.0
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu... 645 0.0
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 644 0.0
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 644 0.0
>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
gi|548853371|gb|ERN11375.1| hypothetical protein
AMTR_s00176p00039530 [Amborella trichopoda]
Length = 1210
Score = 686 bits (1770), Expect = 0.0
Identities = 395/837 (47%), Positives = 529/837 (63%), Gaps = 19/837 (2%)
Frame = +1
Query: 136 GMATES-RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQL 312
G+++E RTV+++ P GT A + LE I G VY KI + + AIVQ
Sbjct: 69 GVSSEGGRTVQVSGFPQGTCAEAVKKFLESITGF-GTVYHLKIRIHKSKPNSRVFAIVQF 127
Query: 313 DRSFLARKLCTTLP-------ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHN 471
S A + + P ++ + + D+V PR + + + +L+FG Q+S
Sbjct: 128 TTSKSAEVIYSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEE 187
Query: 472 RYAVLWTCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLV 651
+A+LW+ +++V+ EF +KK+F L G+ Y+L L + N+ + + YLV
Sbjct: 188 SFAILWS-NTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEGTRYLV 246
Query: 652 IQVYCAPKIYYKEPS--SDMGDGLWIAEFFKFGSNNQWIRTTDFTRNFSIGNSTSICLEL 825
+Q+ AP+I+ K S SD+ D + ++K + QW+R+ DFT + SIG S+S+CL L
Sbjct: 247 LQMQGAPRIFQKPLSFSSDIYDSP-LFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLAL 305
Query: 826 LDGAKDAVIKNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNAL 1005
+G + I+ +F YK+I +L LVP YKILF+VN+L
Sbjct: 306 PNGTRIPNIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKLPYKILFRVNSL 365
Query: 1006 VQEGILSWPALGREFFRLLEPKSEEYVGRILFALQEISYS--GPTYTPEKSLKKIIYDKK 1179
VQ G L P L EF+ LL +V R L + ++ P ++ KK Y
Sbjct: 366 VQNGFLVGPTLDTEFYNLLNGLPSPFVERSLEDISRLTNCCLEPAKWLQEQYKK--YRNL 423
Query: 1180 ARRYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDE 1359
RR + L+ GL+ VHRVQVTP+KVY +GPEV+VSNRV+RQFS YID+F+R+SFIDE
Sbjct: 424 PRRPSPAAISLEPGLVYVHRVQVTPSKVYFYGPEVNVSNRVLRQFSNYIDNFLRISFIDE 483
Query: 1360 DERQLFATDLCQKMPNG-EKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLW 1536
D + +TDL ++M +G E+K+T +Y R+LS FEFLAFSSSQLR++S W
Sbjct: 484 DFGSIRSTDLSKRMASGAEEKHTTVYGRVLSTLKNGIVIGDKKFEFLAFSSSQLRDNSAW 543
Query: 1537 MFASNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIE 1716
MF+ + +TA IR WMG+F IRNVAKCAARMGQ F SS +TL V EVE +DI
Sbjct: 544 MFSPIDGITAANIRQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVKPEEVERISDIK-- 601
Query: 1717 RDSDSYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSL 1893
+ YVFSDGIGKIS+ A+++A+ CGC + PSAFQIRYGGYKGVVA+DPTS YKLSL
Sbjct: 602 --NGKYVFSDGIGKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVAVDPTSRYKLSL 659
Query: 1894 RPSMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLIL 2073
R SMRK+ S N +DVL+++KF+PCFLNRQ+ITLLSTLGV+D FE Q++ +++LD IL
Sbjct: 660 RGSMRKYSSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQLDKIL 719
Query: 2074 DHKDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIF 2253
+ A E L++MS GEN NV+ ML CGY P EP+LSM+L FR KL ELK K RIF
Sbjct: 720 VDPESAFEALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKLSELKTKTRIF 779
Query: 2254 VLNGRCLMGCLDEYRILEYGEIFVQVTE--PRSSLHFGTT---GNQTSIRKRIITGTVIV 2418
+ NGR +MGCLDE ILEYG++FVQ + R FG + + + R R++ G VIV
Sbjct: 780 IPNGRSMMGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVVGKVIV 839
Query: 2419 AKNPCLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCW 2589
AKNPCLHPGDVRIL A+D P LHH+V+CVVFPQKGKRPHPNECSGSDLDGD+YFV W
Sbjct: 840 AKNPCLHPGDVRILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 896
>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao]
Length = 1109
Score = 664 bits (1714), Expect = 0.0
Identities = 382/824 (46%), Positives = 514/824 (62%), Gaps = 12/824 (1%)
Frame = +1
Query: 154 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSFLAR 333
+T++++ P A ++ T LE + K VY+ KI +Q N YA IVQ +S A
Sbjct: 3 KTIQVSRFPSNVHAEEVKTFLE-LYTGKETVYALKIRQQKNGGRAYA--IVQFTKSTDAE 59
Query: 334 KLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCD 498
+ S+ ++A + D+V KPR + LHFGCQVS+ ++ VLW +
Sbjct: 60 LIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWE-E 118
Query: 499 SDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKI 678
DV F ++KL L+ + YRL L + N+ + + + YL+IQ++ AP+I
Sbjct: 119 VDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRI 178
Query: 679 YYKEP-SSDMGDGLWIAEFFKFGSNNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIK 855
Y K+ SS + + +F ++QW+RTTDFT++ IG S+ +CLEL + +
Sbjct: 179 YEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFR 238
Query: 856 NSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWPA 1035
+F YK+ L LVP Y+ILF++N LVQ G + PA
Sbjct: 239 ENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPA 298
Query: 1036 LGREFFRLLEPKSEEYVGRILFALQEISYSGPT-YTPEKSL----KKIIYDKKARRYADF 1200
L F+RL+ P + V I AL+++ Y + P K L K I KK
Sbjct: 299 LDANFYRLVNPCRIDKV-YIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVI 357
Query: 1201 NTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFA 1380
+ LDDGL+ V RVQ+TP++VY GPE++VSNRV+R F + ID+F+R++F+DE+ ++ +
Sbjct: 358 S--LDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHS 415
Query: 1381 TDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQV 1560
TDL + + T++Y RILS FEFLAFSSSQLRE+S WMFAS E +
Sbjct: 416 TDLLTR-----NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGL 470
Query: 1561 TAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVF 1740
TA IR WMG F IRNVAK AAR+GQ FSSS +TL V + E+E +D+ I+RD +YVF
Sbjct: 471 TAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVF 530
Query: 1741 SDGIGKISVALAEELAVHCGCD-YVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFD 1917
SDGIGKIS A+++A C + PSAFQIR GG+KGVVA+DPTSS KLSLR SM K++
Sbjct: 531 SDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYE 590
Query: 1918 SENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDMALE 2097
SEN +DVL+W+K++PCFLNRQ+ITLLSTLGV D FE Q+E +++L+ IL A E
Sbjct: 591 SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQE 650
Query: 2098 VLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVLNGRCLM 2277
L++MS GEN N++ ML CGY P EP+LSM+L FRA+KLLEL+ K+RIFV NGR +M
Sbjct: 651 ALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMM 710
Query: 2278 GCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRI 2457
GCLDE R L+YG++FVQV+ RS F I+ G V+VAKNPCLHPGDVR+
Sbjct: 711 GCLDETRTLDYGQVFVQVSGSRSEQRF------------IVQGKVVVAKNPCLHPGDVRV 758
Query: 2458 LRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCW 2589
L AV+ P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCW
Sbjct: 759 LTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCW 802
>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
max] gi|571439308|ref|XP_006574822.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
max] gi|571439310|ref|XP_006574823.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
max]
Length = 1125
Score = 662 bits (1709), Expect = 0.0
Identities = 382/830 (46%), Positives = 517/830 (62%), Gaps = 18/830 (2%)
Frame = +1
Query: 154 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDR----- 318
+T+++ P + + + T +E E G V++ K L+ R A AI+Q
Sbjct: 3 KTIELYGFPTSVNVSDVKTFVEQYTGE-GTVFAIK-LRHGKGRVPRAFAIIQFTTANSAT 60
Query: 319 SFLARK---LCTTLPASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 489
S ++R L T ++ ++A + RD+V +PR + +L FGCQ+S R++VLW
Sbjct: 61 SMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVLW 120
Query: 490 TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCA 669
DV F S ++K+ + + Y+L LS+ N+ + + + YL+IQ+ A
Sbjct: 121 K-KQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLGA 179
Query: 670 PKIYYKE-PSSDMGDGLWIAEFFKFGSNNQWIRTTDFTRNFSIGNSTSICLELLDGAKDA 846
P+++ + P+S + FFK + QWIR DFT IG S++ICLEL +G +
Sbjct: 180 PRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQLP 239
Query: 847 VIKNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILS 1026
+ +F Y++ +L LVP Y ILF+VN+LVQ L+
Sbjct: 240 NFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACLA 299
Query: 1027 WPALGREFFRLLEPKS--EEYVGRILFALQEISYSGP-TYTPEKSL----KKIIYDKKAR 1185
PAL +F+RL++P+ E++ +AL++I YS Y P K L K + K
Sbjct: 300 GPALDGDFYRLVDPRRMPREFIE---YALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHP 356
Query: 1186 RYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDE 1365
R + LD GL+ V RVQ+TP KVY GPE++VSNRV+R F E+ID+F+RVSF+DE+
Sbjct: 357 RSPAIS--LDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEEL 414
Query: 1366 RQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFA 1545
+LF+TDL + N K T++Y RILS FEFLAFSSSQLRE+SLWMFA
Sbjct: 415 DKLFSTDLSSRSQN---KKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFA 471
Query: 1546 SNEQ-VTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDIT-IER 1719
E TA IR WMGNF IRNVAK AAR+GQ F SS +TL V+ EVE D+ +
Sbjct: 472 PTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKKLTY 531
Query: 1720 DSDSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRP 1899
D + YVFSDGIGKIS+ A+++A CG D PSAFQIRYGGYKGVVA+DP S YKLSLR
Sbjct: 532 DGNEYVFSDGIGKISLEFAQKVAKKCGYDCTPSAFQIRYGGYKGVVAVDPKSCYKLSLRK 591
Query: 1900 SMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDH 2079
SMRK+DS+N +DVL+ +KF+PC+LNRQ+I+LLSTLG++D FE Q+E +N+L+ IL
Sbjct: 592 SMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTD 651
Query: 2080 KDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVL 2259
A EVL +MS GE NV+ ML CGY P +EP+LSM+L FRA+KLLEL+ K+RIF+
Sbjct: 652 SLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIP 711
Query: 2260 NGRCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLH 2439
GR +MGCLDE R LEYG++FVQ + R + + ++ G V+VAKNPCLH
Sbjct: 712 KGRAMMGCLDETRTLEYGQVFVQFSNNRLQNLSDDFFSYDLPKNYMVKGKVVVAKNPCLH 771
Query: 2440 PGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCW 2589
PGDVR+L+AVD P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCW
Sbjct: 772 PGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCW 821
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 661 bits (1706), Expect = 0.0
Identities = 382/833 (45%), Positives = 506/833 (60%), Gaps = 21/833 (2%)
Frame = +1
Query: 154 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSFLAR 333
+T+++ +P AN++ LE E G + + +I KQ HA VQ LA
Sbjct: 3 KTIQVYGVPSNVSANEIKEFLEKYTGE-GTIEALEI-KQPKSGVSMTHAKVQFTSLRLAE 60
Query: 334 KLCTTLP----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDS 501
+ + ++A + D++ KPR + LHFG Q+S+ R+ VLW
Sbjct: 61 LIISLAKQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKA-I 119
Query: 502 DVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIY 681
+V +F ++K + L+ Y+L LS N+ + +L+IQ+ AP+IY
Sbjct: 120 NVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQIY 179
Query: 682 YKEPSSDMGDGLWIAEFFKFGSNNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNS 861
K+ S+ +FK ++QW+R DFT + SIG S+++CLEL G++ +
Sbjct: 180 EKDVSA--------LSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCEN 231
Query: 862 FYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWPALG 1041
F YK+ L LVP +KILF++N LVQ G LS P L
Sbjct: 232 FARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTLD 291
Query: 1042 REFFRLLEPKSEEYVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRYADFNTY---- 1209
FFR ++P+ + I AL+++ Y L++ Y+ + + TY
Sbjct: 292 TNFFRWVDPQRIN-ISFIEHALEKLYY----------LEECCYEPVRWLHEQYRTYISKQ 340
Query: 1210 --------LDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDE 1365
LD GL+ V RVQ+TP KVY GPEV+VSNRV+R + E ID+F+RVSF+DE+
Sbjct: 341 VAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENS 400
Query: 1366 RQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFA 1545
++ +T + +M N E + T +Y RILS F+FLA SSSQLR++S WMFA
Sbjct: 401 EKIHSTVISPRMSN-EGRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFA 459
Query: 1546 SNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDS 1725
S +TA IR+ MG+F IRNVAK AAR+GQ FSSSK+TL V + E+E DI RD
Sbjct: 460 SRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDG 519
Query: 1726 DSYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPS 1902
+YVFSDGIGKIS LA +A+ CGC + PSAFQIRYGGYKGVVA+DPTSS KLSLR S
Sbjct: 520 TTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKS 579
Query: 1903 MRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHK 2082
M K++SEN N+DVLSW+K+RPCFLNRQ+ITLLSTLGV+D FE Q+E +++LD IL
Sbjct: 580 MFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDP 639
Query: 2083 DMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVLN 2262
A E L++MS GEN N++ ML CGY P EP+LSM+L FRAAKLLEL+ K RIFV N
Sbjct: 640 LRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPN 699
Query: 2263 GRCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTT----GNQTSIRKRIITGTVIVAKNP 2430
GR +MGCLDE R LEYGE+FVQ++ FG + G+ + I+ G V+VAKNP
Sbjct: 700 GRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNP 759
Query: 2431 CLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCW 2589
CLHPGDVRIL AVD P LHH+VDCVVFPQKG RPHP+ECSGSDLDGD+YFVCW
Sbjct: 760 CLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCW 812
>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
1a [Cucumis sativus]
Length = 1130
Score = 659 bits (1701), Expect = 0.0
Identities = 382/833 (45%), Positives = 510/833 (61%), Gaps = 21/833 (2%)
Frame = +1
Query: 154 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 327
+T+ I+ P A+ + LEG G VY+ K+ K+ R +AIVQ +
Sbjct: 3 KTIHISGFPSHVTADAVKNFLEGHTGP-GTVYAIKVRPPKRGGGR---LYAIVQFTSATQ 58
Query: 328 ARKLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWT 492
A + + S+ ++A D+V KPR + L FGCQVS ++ VLW
Sbjct: 59 AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWE 118
Query: 493 CDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAP 672
+ D+ F ++K+ L + + YRL LS+ + + + YL+IQ+ AP
Sbjct: 119 GNVDL-VTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAP 177
Query: 673 KIYYK-EPSSDMGDGLWIAEFFKFGSNNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAV 849
+IY K P+S + FFK S++QW+RTTDFT + SIG S+S+CL+L +G +
Sbjct: 178 RIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPP 237
Query: 850 IKNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSW 1029
K +F Y++ L R + YKILF++NALVQ G + W
Sbjct: 238 FKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPW 297
Query: 1030 PALGREFFRLLEP------KSEEYVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRY 1191
P L F+RL+E + E+ LF L+E +Y + E+ Y K +R
Sbjct: 298 PLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQ------YRKYSRHP 351
Query: 1192 ADFNTY-LDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDER 1368
+ LDDGL+ V RVQ+TP KV+ GPEV+VSNRV+R FS+YID+F+RVSF+DE+
Sbjct: 352 PNSPVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWD 411
Query: 1369 QLFATDLCQKMPN-GEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFA 1545
++ +TDL +M + E T +Y RILS F+FLAFSSSQLR++SLWMFA
Sbjct: 412 KMRSTDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFA 471
Query: 1546 SNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDS 1725
S + A IRAWMG+F I+N AK AAR+GQ F SS + L V +E E DI +++
Sbjct: 472 SGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGE 531
Query: 1726 DSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSM 1905
YVFSDGIGKIS A+E+A CG VPSAFQIRYGGYKGVVA+DP S+ KLSLR SM
Sbjct: 532 IKYVFSDGIGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSM 591
Query: 1906 RKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKD 2085
KF+S+N +DVL +K++PCFLNRQ+ITL+STLGVRD+ FE Q E + +LD IL
Sbjct: 592 CKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPL 651
Query: 2086 MALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVLNG 2265
A E L++MS GEN N++ ML+CGY P EPYLSM+L FRA+KLLEL+ K+RIF+ NG
Sbjct: 652 KAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNG 711
Query: 2266 RCLMGCLDEYRILEYGEIFVQVTEPR-----SSLHFGTTGNQTSIRKRIITGTVIVAKNP 2430
R +MGCLDE R LEYG++FVQ++ R S F G + + +I G V VAKNP
Sbjct: 712 RAMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHL---VIEGNVTVAKNP 768
Query: 2431 CLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCW 2589
CLHPGDVR+L+AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCW
Sbjct: 769 CLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCW 821
>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
gi|482575337|gb|EOA39524.1| hypothetical protein
CARUB_v10008144mg [Capsella rubella]
Length = 1107
Score = 655 bits (1691), Expect = 0.0
Identities = 387/829 (46%), Positives = 513/829 (61%), Gaps = 17/829 (2%)
Frame = +1
Query: 154 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 327
+T+++ P+G + + + LE L G VY+ K+ K+ PR AIVQ
Sbjct: 3 KTIQVFGFPVGVNTDDVKIFLER-LTGSGTVYAIKVRQPKRGGPR---VFAIVQFTSERH 58
Query: 328 ARKLCTTLPASTL------MQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 489
AR L T+ A L ++A + +D+V KPR S I+ +++FGCQVS + LW
Sbjct: 59 AR-LIITMAAERLYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLW 117
Query: 490 TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCA 669
+ + V F + ++KL ++ YRL LS+ N+ + +S +LVIQV A
Sbjct: 118 SAHN-VCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGGSSKFLVIQVIGA 176
Query: 670 PKIYYKEPSSDMGDGLWIAEFFKFGSNNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAV 849
PKI+ KE + + +F+ GS+ QWIRTTDFT + IG ST+ CLEL
Sbjct: 177 PKIFEKE-DQPVNFLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHVHVPD 235
Query: 850 IKNSFYNYKDIRENLSL--HINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGIL 1023
+ +F NY + R + L + +LVP ++ILF+VN LVQ L
Sbjct: 236 FRENFANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPPGFDLPFEILFKVNTLVQNACL 295
Query: 1024 SWPALGREFFRLLEPKSEE-----YVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARR 1188
PAL EF++LL PK + + LF L E Y + E+ KK+ KK
Sbjct: 296 PGPALDLEFYQLLNPKKYDRALIDHSLEKLFHLGECCYEPARWLREE-YKKLNSSKKLPL 354
Query: 1189 YADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDER 1368
+ LDDGL+ ++RV VTP +VY GPEV+VSNRV+R +SEYI++F+R+SF+DED
Sbjct: 355 SPTIS--LDDGLVYIYRVLVTPARVYFLGPEVNVSNRVLRHYSEYINNFLRISFVDEDLE 412
Query: 1369 QLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFAS 1548
++ + DL + + ++ TKLY RI S FEFLAFSSSQLRE+S WMFA
Sbjct: 413 KIHSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 470
Query: 1549 NEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSD 1728
+++TA IRAWMG+F IRNVAK AAR+GQ FSSS++TL V E+E D+
Sbjct: 471 RDRLTAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEAMYLDT 530
Query: 1729 SYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSM 1905
YVFSDGIGKIS A ++A CG ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM
Sbjct: 531 RYVFSDGIGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSM 590
Query: 1906 RKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKD 2085
KF+S N +DVL+W+K++PC+LNRQIITLLSTLGV+D FE Q+E ++RLD IL
Sbjct: 591 SKFESGNTKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQREVVDRLDAILTDPL 650
Query: 2086 MALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVLNG 2265
A E L +M+ GEN N++ +L CGY P EP+LSM+L FRA+KLLEL+ K RIF+ G
Sbjct: 651 EAHEALGLMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFIPGG 710
Query: 2266 RCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKR-IITGTVIVAKNPCLHP 2442
R +MGCLDE R LEYG++ VQ + P T KR IITG V+VAKNPCLHP
Sbjct: 711 RSMMGCLDETRTLEYGQVVVQYSNP------------TMPGKRYIITGPVVVAKNPCLHP 758
Query: 2443 GDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCW 2589
GDVR+L+AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YF+CW
Sbjct: 759 GDVRVLQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFICW 807
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 655 bits (1689), Expect = 0.0
Identities = 379/831 (45%), Positives = 507/831 (61%), Gaps = 18/831 (2%)
Frame = +1
Query: 151 SRTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSFLA 330
S+T+++ P A+++ LE E G + + +I KQ HA VQ LA
Sbjct: 2 SKTIQVYGFPSIVSADEIKEFLEKYTGE-GTIEALEI-KQPRSGASMTHAKVQFTSFELA 59
Query: 331 RKLCTTLPAST-----LMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTC 495
+ T ++A + D++ KPR + LHFGCQ+S R+ VLW
Sbjct: 60 EFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKA 119
Query: 496 DSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPK 675
+V +F S ++K + L+ Y+L LS+ N+ + +L+IQ+ AP+
Sbjct: 120 -INVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQ 178
Query: 676 IYYKEPSSDMGDGLWIAEFFKFGSNNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIK 855
IY K+ ++ +FK ++QW+R DFT + IG S ++CLEL G++ +
Sbjct: 179 IYEKDVPV-------LSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFR 231
Query: 856 NSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWPA 1035
+F YK+ L LVP ++ILF++N LVQ G LS P
Sbjct: 232 ENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPT 291
Query: 1036 LGREFFRLLEPKSE-----EYVGRILFALQEISYSGPTYTPEKS---LKKIIYDKKARRY 1191
L FFRL++P+ E+ L+ L+E Y + E+ +KK + A
Sbjct: 292 LDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVKKPVAGSPA--- 348
Query: 1192 ADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQ 1371
LD GL+ V RVQ+TP KVY GPEV+VSNRV+R + E ID+F+RVSF+DE+ +
Sbjct: 349 ----ISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEK 404
Query: 1372 LFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASN 1551
+ +T + +M E + T +Y RILS F+FLAFSSSQLR++S WMFAS
Sbjct: 405 IHSTVISPRMSK-EGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASR 463
Query: 1552 EQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDS 1731
+TA IR+WMG+F IRNVAK AAR+GQ FSSSK+TL V + E+E+ DI I + +
Sbjct: 464 PGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTT 523
Query: 1732 YVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMR 1908
YVFSDGIGKIS LA +A+ CGC PSAFQIRYGGYKGVVA+DPTSS KLSLR SM
Sbjct: 524 YVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMF 583
Query: 1909 KFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDM 2088
K++S+N N+DVL+W+K++P FLNRQ+ITLLSTLGV+D FE Q+ +++LD IL
Sbjct: 584 KYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVA 643
Query: 2089 ALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVLNGR 2268
A E L++MS GEN NV+ ML CGY P EP+LSM+L FRAAKLLEL+ K RIFV NGR
Sbjct: 644 AQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGR 703
Query: 2269 CLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTT----GNQTSIRKRIITGTVIVAKNPCL 2436
+MGCLDE R LEYGE+FVQ++ FG + G+ + I+ G ++VAKNPCL
Sbjct: 704 SMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCL 763
Query: 2437 HPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCW 2589
HPGDVR+L AV+ P LHH+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCW
Sbjct: 764 HPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCW 814
>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
AltName: Full=RNA-directed RNA polymerase 1
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
[Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
putative RNA-directed RNA polymerase [Arabidopsis
thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 654 bits (1686), Expect = 0.0
Identities = 385/827 (46%), Positives = 508/827 (61%), Gaps = 15/827 (1%)
Frame = +1
Query: 154 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 327
+T+++ P G A ++ LE L G VY+ K+ K+ PR +AIVQ
Sbjct: 3 KTIQVFGFPNGVSAEEVKKFLER-LTGSGTVYAIKVRQPKKGGPR---VYAIVQFTSERH 58
Query: 328 ARKLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWT 492
R + T + ++A + +D+V KPR S I+ ++ FGCQVS ++ LW+
Sbjct: 59 TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118
Query: 493 CDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAP 672
DV F ++KL + YRL LS+ N+ + +S +LVIQV AP
Sbjct: 119 AQ-DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 177
Query: 673 KIYYKEPSSDMGDGLWIAEFFKFGSNNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVI 852
KI+ KE + I +F+ GS+ QWIRTTDFT + IG ST+ CLEL
Sbjct: 178 KIFEKE-DQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDF 236
Query: 853 KNSFYNYKDIRENLSL--HINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILS 1026
+ +F NY + R + L + LVP ++ILF++N LVQ LS
Sbjct: 237 RENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLS 296
Query: 1027 WPALGREFFRLLEPKSEE-----YVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRY 1191
PAL +F+RLL K + + LF L E Y P + KK I K +
Sbjct: 297 GPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYE-PAHWLRDEYKKWI--SKGKLP 353
Query: 1192 ADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQ 1371
LDDGL+ ++RVQVTP +VY GPEV+VSNRV+R +S+YI++F+RVSF+DED +
Sbjct: 354 LSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEK 413
Query: 1372 LFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASN 1551
+ + DL + + ++ TKLY RI S FEFLAFSSSQLRE+S WMFA
Sbjct: 414 VRSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 471
Query: 1552 EQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDS 1731
+++TA IRAWMG+F IRNVAK AAR+GQ FSSS++TL V E+E D+ I
Sbjct: 472 DRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTR 531
Query: 1732 YVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMR 1908
YVFSDGIGKIS A ++A CG ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM
Sbjct: 532 YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 591
Query: 1909 KFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDM 2088
KF+SEN +DVL+W+K++PC++NRQ+ITLLSTLGV D FE Q+E ++RLD IL H
Sbjct: 592 KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLE 651
Query: 2089 ALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVLNGR 2268
A E L +M+ GEN N++ ++ CGY P EP+LSM+L FRA+KLLEL+ K RIF+ GR
Sbjct: 652 AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 711
Query: 2269 CLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGD 2448
+MGCLDE R LEYG++ VQ ++P R+ IITG V+VAKNPCLHPGD
Sbjct: 712 SMMGCLDETRTLEYGQVVVQYSDP-----------MRPGRRFIITGPVVVAKNPCLHPGD 760
Query: 2449 VRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCW 2589
VR+L+AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCW
Sbjct: 761 VRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCW 807
>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
1 [Arabidopsis lyrata subsp. lyrata]
Length = 1107
Score = 652 bits (1683), Expect = 0.0
Identities = 383/828 (46%), Positives = 509/828 (61%), Gaps = 16/828 (1%)
Frame = +1
Query: 154 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 327
+T+++ P G A ++ LE L G VY+ K+ K+ PR AIVQ
Sbjct: 3 KTIQVFGFPNGVSAEEVKKFLER-LTGSGTVYAIKVRQPKKGGPR---VFAIVQFTNEIY 58
Query: 328 ARKLCTTLPASTL------MQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 489
AR++ T L + A + +D+V KPR S +I+ +++FGCQVS LW
Sbjct: 59 ARQIITGAAERRLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQTLLTLW 118
Query: 490 TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCA 669
+ DV F ++KL + YRL LS+ N+ + +S +LVIQV A
Sbjct: 119 SAQ-DVSVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGA 177
Query: 670 PKIYYKEPSSDMGDGLWIAEFFKFGSNNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAV 849
PKI+ KE + + +F+ GS+ QWIRTTDFT + IG ST+ CLEL
Sbjct: 178 PKIFEKE-DQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPD 236
Query: 850 IKNSFYNYKDIRENLSL--HINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGIL 1023
+ +F NY + R + L + +LVP ++ILF++N LVQ L
Sbjct: 237 FRENFANYAEHRASTYLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNACL 296
Query: 1024 SWPALGREFFRLLEPKSEEYVGRILF--ALQEISYSGPT-YTPEKSLKKIIYD--KKARR 1188
PAL + ++LL PK + R L L+++ Y G + Y P + L+K + K +
Sbjct: 297 PGPALDLDVYQLLNPKK---IDRALIDHCLEKLFYLGESCYEPARWLRKQYKELSSKGKL 353
Query: 1189 YADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDER 1368
LDDGL+ ++RVQVTP +VY GPEV+VSNRV+R +S+YI++F+RVSF+DED
Sbjct: 354 PLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLE 413
Query: 1369 QLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFAS 1548
++ + DL + + ++ TKLY RI S FEFLAFSSSQLRE+S WMFA
Sbjct: 414 KVRSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 471
Query: 1549 NEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSD 1728
E +T+ IRAWMG+F IRNVAK AAR+GQ FSSS++TL V E+E D+ I
Sbjct: 472 IEGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGT 531
Query: 1729 SYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSM 1905
YVFSDGIGKIS A +A CG ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM
Sbjct: 532 RYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSM 591
Query: 1906 RKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKD 2085
KF+SEN +DVL+W+K++PC++NRQ+ITLLSTLGV D FE Q+E ++RLD IL
Sbjct: 592 SKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVEDSVFEKKQREVVDRLDAILTDPL 651
Query: 2086 MALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVLNG 2265
A E L +M+ GEN N++ ++ CGY P EP+LSM+L FRA+KLLEL+ K RIF+ G
Sbjct: 652 EAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGG 711
Query: 2266 RCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPG 2445
R +MGCLDE R LEYG++ VQ ++P R+ IITG V+VAKNPCLHPG
Sbjct: 712 RSMMGCLDETRTLEYGQVVVQYSDP-----------MRPGRRFIITGPVVVAKNPCLHPG 760
Query: 2446 DVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCW 2589
DVR+L AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCW
Sbjct: 761 DVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCW 808
>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1133
Score = 652 bits (1681), Expect = 0.0
Identities = 382/833 (45%), Positives = 519/833 (62%), Gaps = 21/833 (2%)
Frame = +1
Query: 154 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQ---LDRSF 324
+T++++ P A + LEG +G VY+ KI + T ++AIVQ ++ +
Sbjct: 3 KTIQLSGFPSHVSAESVKEFLEGHTG-RGTVYAIKI-RPTKNGGSRSYAIVQFMTVETAE 60
Query: 325 LARKLCTTLP--ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCD 498
L +L + + A V+ RD+V KPR + + LHFGCQ+S +++ LW
Sbjct: 61 LIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWRV- 119
Query: 499 SDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKI 678
+V +F +++L LT + YRL L + NV + + YL+IQ+ AP++
Sbjct: 120 GNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPRV 179
Query: 679 YYKEP--SSDMGDGLWIAEFFKFGSNNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVI 852
Y KE S D+ + + +FK ++QW+R TDFT + IG+S+++ LEL G +
Sbjct: 180 YEKEVRISFDILENP-LFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDL 238
Query: 853 KNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWP 1032
+ +F YK+ E L LVP ++ +F++N L+Q G LS P
Sbjct: 239 RENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGP 298
Query: 1033 ALGREFFRLLEPKSEEYVGRI------LFALQEISYSGPTYTPEKSLKKIIYDKKARRYA 1194
L +F+RL++P+ V I LF L+E Y + E+ K + + + A
Sbjct: 299 TLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPA 358
Query: 1195 DFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQL 1374
LD GL+ V RVQVTP+KVY GPE++VSNRV+R++ +YID F+RVSF+DE+ +L
Sbjct: 359 ---IALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKL 415
Query: 1375 FATDLCQKMPNG-EKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASN 1551
F+TDL + N E + T +Y RILS FEFLAFSSSQLR++SLWMFA+
Sbjct: 416 FSTDLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAV 475
Query: 1552 EQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDS 1731
+ +A+TIR W+G+F SIRNVAK AAR+GQ F SS +TL V ESE E +DI IER +
Sbjct: 476 DGHSADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVK 535
Query: 1732 YVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMR 1908
YVFSDGIGKIS A+ +A CG D VPSAFQIRY GYKGVVA+DPTSS KLSLR SM
Sbjct: 536 YVFSDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMW 595
Query: 1909 KFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDM 2088
K++SE +DVL+++K + C+LNRQ+ITLLSTLGV D+ FE Q+E + +L+ IL+
Sbjct: 596 KYESELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLR 655
Query: 2089 ALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVLNGR 2268
A E L +MS GE N++ +L CGY P EP+LSM+L AFRA+KL EL+ K RI + +GR
Sbjct: 656 AREALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGR 715
Query: 2269 CLMGCLDEYRILEYGEIFVQVT----EP--RSSLHFGTTGNQTSIRKRIITGTVIVAKNP 2430
+MGCLDE R LEYGE+FVQ + P S G TG S + I+ G V+VAKNP
Sbjct: 716 AMMGCLDEMRTLEYGEVFVQFSGITHRPFFEDSFMLGGTG---SGQNYIVVGRVVVAKNP 772
Query: 2431 CLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCW 2589
CLHPGDVR+LRAV+ P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCW
Sbjct: 773 CLHPGDVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCW 825
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 650 bits (1678), Expect = 0.0
Identities = 380/833 (45%), Positives = 506/833 (60%), Gaps = 21/833 (2%)
Frame = +1
Query: 154 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHV-YAHAIVQLDRSFLA 330
+T+++ P G A + LE G VY+ K+ +T + V +AIVQ A
Sbjct: 3 KTIQVFGFPAGVTAEAVKDFLES-KTGGGTVYALKL--RTPKKGVGRLYAIVQFTTKEAA 59
Query: 331 RKL----CTTLP---ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 489
+ C T + + A + +D V +PR + LHFGC++S+ ++AVLW
Sbjct: 60 DTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVLW 119
Query: 490 TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCA 669
+V F ++K+ L+ G YRL L + N+ + + YL+IQ+ A
Sbjct: 120 R-GVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGA 178
Query: 670 PKIYYKE-PSSDMGDGLWIAEFFKFGSNNQWIRTTDFTRNFSIGNSTSICLELLDGAKDA 846
P+I+ K S D+ + FFK ++QW+RTTDFT + IG ST +C+EL +
Sbjct: 179 PRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELP 238
Query: 847 VIKNSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILS 1026
K +F YK+ + L LVP Y+ILF++N LVQ G ++
Sbjct: 239 DFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVA 298
Query: 1027 WPALGREFFRLLEPKSE-------EYVGRILFALQEISYSGPTYTPEKSLKKIIYDKKAR 1185
P L F+RL++P E+ L+ L+E Y + ++ K + K
Sbjct: 299 GPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPS 358
Query: 1186 RYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDE 1365
A LDDGL+ VHRVQVTP++VY GPE++VSNRV+R F ID+F+R+SFIDED
Sbjct: 359 SPA---ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDL 415
Query: 1366 RQLFATDLCQKMPNG-EKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMF 1542
++ +TDL + + + T++Y RILS FEFLAFSSSQLRESS WMF
Sbjct: 416 DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF 475
Query: 1543 ASNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERD 1722
AS +TA IR WMGNF IRNVAK AAR+GQ FSSSK+TL V+ E+E D+ IE
Sbjct: 476 ASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIG 535
Query: 1723 SDSYVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRP 1899
YVFSDGIGK+S A ++A CG D PSAFQIRYGGYKGVVA DPTSS KLSLR
Sbjct: 536 KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRD 595
Query: 1900 SMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDH 2079
SMRK++SE +DVL+W+K++PCFLNRQ+I+LLSTLG+ D+ FE Q+E + +LD IL
Sbjct: 596 SMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 655
Query: 2080 KDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVL 2259
A E L++MS GEN N++ +L CGY P EP+LSM+L FRA+KLLEL+ K RIF+
Sbjct: 656 PLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 715
Query: 2260 NGRCLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKR---IITGTVIVAKNP 2430
NGR +MGCLDE R L YG++FVQ++ G + +S R R I+ G V+VAKNP
Sbjct: 716 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 775
Query: 2431 CLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCW 2589
CLHPGDVR+L+AV+ P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCW
Sbjct: 776 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 828
>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
Length = 1115
Score = 650 bits (1678), Expect = 0.0
Identities = 362/754 (48%), Positives = 484/754 (64%), Gaps = 10/754 (1%)
Frame = +1
Query: 358 STLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKK 537
S+ ++A + D+V R H+ L+FGCQ+S +++AVL + ++V +F +KK
Sbjct: 73 SSYLKAWEMKTDIVQL-RAYVDHMDGITLNFGCQISDDKFAVLGS--TEVSIKFGIGLKK 129
Query: 538 LFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGL 717
F L+ Y+L LS+ N+ + + +L+IQ++ AP+IY + +S
Sbjct: 130 FFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS------ 183
Query: 718 WIAEFFKFGSNNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLS 897
FFK ++QW+RTTDF ++ IG S+S+CL+ G + SF++Y + N++
Sbjct: 184 -CYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNIT 241
Query: 898 LHINXXXXXXXR--LVPSXXXXXXXXXXYKILFQVNALVQEGILSWPALGREFFRLLEPK 1071
L + LVP+ YKILF++++LVQ G + PAL FFRL++P+
Sbjct: 242 LQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVNFFRLVDPQ 301
Query: 1072 SEEYVGRILFALQEISYSGPT-YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRV 1242
V I AL+++ Y Y P + L + Y K + + LDDGL+ V RV
Sbjct: 302 RRN-VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRV 360
Query: 1243 QVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKY 1422
VTP KVY GPEV+VSNRV+R +SE ID+F+RVSF+DE+ +L++TDL K G
Sbjct: 361 LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR 420
Query: 1423 TKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLS 1602
T +Y+RILS FEFLAFSSSQLR++S+WMFAS +TA IR WMG+F
Sbjct: 421 TNIYVRILSTLQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQ 480
Query: 1603 IRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEE 1782
I+NVAK AAR+GQ F SSK+TL V E+E D+ + SYVFSDGIGKIS A
Sbjct: 481 IKNVAKYAARLGQSFGSSKETLSVLRHEIEIIPDVKVH--GTSYVFSDGIGKISADFARR 538
Query: 1783 LAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFR 1962
+A CG Y PSAFQIRYGGYKGVVA+DP SS KLSLR SM K++S+N +DVL W+K++
Sbjct: 539 VASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQ 598
Query: 1963 PCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVII 2142
PCFLNRQ++TLLSTLGV+D E Q+E +++LD IL A E L++MS GEN N++
Sbjct: 599 PCFLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILK 658
Query: 2143 NMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVLNGRCLMGCLDEYRILEYGEIF 2322
ML CGY P EP+LSM+L FRA+KLL+L+ ++RIF+ NGR +MGCLDE R LEYG++F
Sbjct: 659 AMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVF 718
Query: 2323 VQVT-----EPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLH 2487
VQ T E LH T+ I+ G V+VAKNPCLHPGD+R+LRAVD P LH
Sbjct: 719 VQFTGSGHREFSEDLHPFNNSRSTNC-NFILKGNVVVAKNPCLHPGDIRVLRAVDVPALH 777
Query: 2488 HLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCW 2589
H+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCW
Sbjct: 778 HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCW 811
>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 650 bits (1678), Expect = 0.0
Identities = 384/827 (46%), Positives = 507/827 (61%), Gaps = 15/827 (1%)
Frame = +1
Query: 154 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 327
+T+++ P G A ++ LE L G VY+ K+ K+ PR +AIVQ
Sbjct: 3 KTIQVFGFPNGVSAEEVKKFLER-LTGSGTVYAIKVRQPKKGGPR---VYAIVQFTSERH 58
Query: 328 ARKLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWT 492
R + T + ++A + +D+V KPR S I+ ++ FGCQVS ++ LW+
Sbjct: 59 TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118
Query: 493 CDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAP 672
DV F ++KL + YRL LS+ N+ + +S +LVIQV AP
Sbjct: 119 AQ-DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 177
Query: 673 KIYYKEPSSDMGDGLWIAEFFKFGSNNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVI 852
KI+ KE + I +F+ GS+ QWIRTTDFT + IG ST+ CLEL
Sbjct: 178 KIFEKE-DQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDF 236
Query: 853 KNSFYNYKDIRENLSL--HINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILS 1026
+ +F NY + R + L + LVP ++ILF++N LVQ LS
Sbjct: 237 RENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLS 296
Query: 1027 WPALGREFFRLLEPKSEE-----YVGRILFALQEISYSGPTYTPEKSLKKIIYDKKARRY 1191
PAL +F+RLL K + + LF L E Y P + KK I K +
Sbjct: 297 GPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYE-PAHWLRDEYKKWI--SKGKLP 353
Query: 1192 ADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQ 1371
LDDGL+ ++RVQVTP +VY GPEV+VSNRV+R +S+YI++F+RVSF+DED +
Sbjct: 354 LSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEK 413
Query: 1372 LFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASN 1551
+ + DL + + ++ TKLY RI S FEFLAFSSSQLRE+S WMFA
Sbjct: 414 VRSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 471
Query: 1552 EQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDS 1731
+++TA IRAWMG+F IRNVAK AAR+GQ FSSS++TL V E+E D+ I
Sbjct: 472 DRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTR 531
Query: 1732 YVFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMR 1908
YVFSDGIGKIS A ++A CG ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM
Sbjct: 532 YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMS 591
Query: 1909 KFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDM 2088
KF+SEN +DVL+W+K++PC++NRQ+ITLLSTLGV D FE Q+E ++RLD IL H
Sbjct: 592 KFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLE 651
Query: 2089 ALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVLNGR 2268
A E L +M+ GEN N++ ++ CGY P EP+LSM+L FRA+KLLEL+ K RIF+ GR
Sbjct: 652 AHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGR 711
Query: 2269 CLMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGD 2448
+MGCLDE R LEYG++ VQ ++P R+ IITG V+VAKNPCLH GD
Sbjct: 712 SMMGCLDETRTLEYGQVVVQYSDP-----------MRPGRRFIITGPVVVAKNPCLHSGD 760
Query: 2449 VRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCW 2589
VR+L+AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCW
Sbjct: 761 VRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCW 807
>gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 841
Score = 648 bits (1672), Expect = 0.0
Identities = 361/754 (47%), Positives = 483/754 (64%), Gaps = 10/754 (1%)
Frame = +1
Query: 358 STLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKK 537
S+ ++A + D+V R H+ L+FGCQ+S +++AVL + ++V +F +KK
Sbjct: 73 SSYLKAWEMKTDIVQL-RAYVDHMDGITLNFGCQISDDKFAVLGS--TEVSIKFGIGLKK 129
Query: 538 LFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGL 717
F L+ Y+L LS+ N+ + + +L+IQ++ AP+IY + +S
Sbjct: 130 FFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS------ 183
Query: 718 WIAEFFKFGSNNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLS 897
FFK ++QW+RTTDF ++ IG S+S+CL+ G + SF++Y + N++
Sbjct: 184 -CYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYTERENNIT 241
Query: 898 LHINXXXXXXXR--LVPSXXXXXXXXXXYKILFQVNALVQEGILSWPALGREFFRLLEPK 1071
L + LVP+ YKILF++++LVQ G + PAL FFRL++P+
Sbjct: 242 LQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQ 301
Query: 1072 SEEYVGRILFALQEISYSGPT-YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRV 1242
V I AL+++ Y Y P + L + Y K + + LDDGL+ V RV
Sbjct: 302 RRN-VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRV 360
Query: 1243 QVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKY 1422
VTP KVY GPEV+VSNRV+R +SE ID+F+RVSF+DE+ +L++TDL K G
Sbjct: 361 LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR 420
Query: 1423 TKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLS 1602
T +Y RILS FEFLAFSSSQLR++S+WMFAS +TA IR WMG+F
Sbjct: 421 TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQ 480
Query: 1603 IRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEE 1782
I+NVAK AAR+GQ F SSK+TL V E+E D+ + SYVFSDGIGKIS A
Sbjct: 481 IKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARR 538
Query: 1783 LAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFR 1962
+A CG Y PSAFQIRYGGYKGVVA+DP SS KLSLR SM K++S+N +DVL W+K++
Sbjct: 539 VASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQ 598
Query: 1963 PCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVII 2142
PC+LNRQ++TLLSTLGV+D E Q+E +++LD IL A E L++MS GEN N++
Sbjct: 599 PCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILK 658
Query: 2143 NMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVLNGRCLMGCLDEYRILEYGEIF 2322
ML CGY P EP+LSM+L FRA+KLL+L+ ++RIF+ NGR +MGCLDE R LEYG++F
Sbjct: 659 AMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVF 718
Query: 2323 VQVT-----EPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLH 2487
VQ T E LH T+ I+ G V+VAKNPCLHPGD+R+LRAVD P LH
Sbjct: 719 VQFTGAGHREFSEDLHPFNNSRSTNC-NFILKGNVVVAKNPCLHPGDIRVLRAVDVPALH 777
Query: 2488 HLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCW 2589
H+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCW
Sbjct: 778 HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCW 811
>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
Length = 1107
Score = 647 bits (1670), Expect = 0.0
Identities = 379/826 (45%), Positives = 510/826 (61%), Gaps = 14/826 (1%)
Frame = +1
Query: 154 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKIL--KQTNPRHVYAHAIVQLDRSFL 327
+T+++ P G A ++ LE L G VY+ K+ K+ PR AIVQ
Sbjct: 3 KTIQVFGFPNGVSAEEVKKFLER-LTGSGTVYAIKVRQPKKGGPR---VFAIVQFTNERY 58
Query: 328 ARKLCTTLPASTL------MQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLW 489
AR++ T L + A + +D+V KPR S +I+ +++FGCQVS ++ LW
Sbjct: 59 ARQIITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLW 118
Query: 490 TCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCA 669
+ DV F ++KL + YRL LS+ N+ + +S +LVIQV A
Sbjct: 119 SAQ-DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGA 177
Query: 670 PKIYYKEPSSDMGDGLWIAEFFKFGSNNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAV 849
PKI+ KE + + +F+ GS+ QWIRTTDFT + IG ST+ CLEL
Sbjct: 178 PKIFEKE-DQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPD 236
Query: 850 IKNSFYNYKDIRENLSL--HINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGIL 1023
+ +F NY + R + L + +LVP ++ILF++N LVQ L
Sbjct: 237 FRENFANYAEHRASPFLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNACL 296
Query: 1024 SWPALGREFFRLLEPKSEEYVGRILFALQEISYSGPT-YTPEKSLKKIIYD--KKARRYA 1194
PAL + ++LL PK I L+++ + G + Y P + L+K + K +
Sbjct: 297 PGPALDLDVYQLLNPKKYNRA-LIDHCLEKLFHLGESCYEPARWLRKQYKELSSKGKLPL 355
Query: 1195 DFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQL 1374
LDDGL+ ++RVQVTP +VY GPEV+VSNRV+R +S+YI++F+RVSF+DED ++
Sbjct: 356 SPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKV 415
Query: 1375 FATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNE 1554
+ DL + + ++ TKLY RI S FEFLAFSSSQLRE+S WMFA +
Sbjct: 416 RSMDLSPR--SSTQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPID 473
Query: 1555 QVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSY 1734
+T+ IRAWMG+F IRNVAK AAR+GQ FSSS++TL V E+E D+ I Y
Sbjct: 474 GLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRY 533
Query: 1735 VFSDGIGKISVALAEELAVHCGC-DYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRK 1911
VFSDGIGKIS A +A CG ++ PSAFQIRYGGYKGVVA+DP SS KLSLR SM K
Sbjct: 534 VFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSK 593
Query: 1912 FDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDMA 2091
F+SEN +DVL+W+K++PC++NRQ+ITLLSTLGV+D F+ Q+E ++RLD IL A
Sbjct: 594 FESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKKKQREVVDRLDAILTDPLEA 653
Query: 2092 LEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVLNGRC 2271
E L +M+ GEN N++ ++ CGY P EP+LSM+L FRA+KLLEL+ K RIF+ GR
Sbjct: 654 HEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRS 713
Query: 2272 LMGCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDV 2451
+MGCLDE R LEYG++ VQ ++P R+ IITG V+VAKNPCLHPGDV
Sbjct: 714 MMGCLDETRTLEYGQVVVQYSDP-----------MRPGRRFIITGPVVVAKNPCLHPGDV 762
Query: 2452 RILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCW 2589
R+L AV+ P L+H+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCW
Sbjct: 763 RVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCW 808
>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 647 bits (1669), Expect = 0.0
Identities = 359/754 (47%), Positives = 484/754 (64%), Gaps = 10/754 (1%)
Frame = +1
Query: 358 STLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKK 537
S+ ++A + D+V R H+ L+FGCQ+S +++AVL + ++V +F +KK
Sbjct: 73 SSYLKAWEMKTDIVQL-RAYVDHMDGITLNFGCQISEDKFAVLGS--TEVSIKFGIGLKK 129
Query: 538 LFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGL 717
F L+ Y+L LS+ N+ + + +L+IQ++ AP+IY + +S
Sbjct: 130 FFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS------ 183
Query: 718 WIAEFFKFGSNNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLS 897
FFK ++QW+RTTDFT ++ IG S+S+CL+ G + SF++Y + N++
Sbjct: 184 -CYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNIT 241
Query: 898 LHINXXXXXXXR--LVPSXXXXXXXXXXYKILFQVNALVQEGILSWPALGREFFRLLEPK 1071
L + LVP+ YKILF++++LVQ G + PAL FFRL++P+
Sbjct: 242 LQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQ 301
Query: 1072 SEEYVGRILFALQEISYSGPT-YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRV 1242
V I AL+++ Y Y P + L + Y K + + LDDGL+ V RV
Sbjct: 302 RRN-VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRV 360
Query: 1243 QVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKY 1422
VTP KVY GPEV+VSNRV+R +SE ID+F+RVSF+DE+ +L++T+L K G
Sbjct: 361 LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR 420
Query: 1423 TKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLS 1602
T +Y RILS FEFLAFSSSQLR++S+WMFAS +T IR+WMG+F
Sbjct: 421 TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQ 480
Query: 1603 IRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEE 1782
I+NVAK AAR+GQ F SS++TL V E+E D+ + SYVFSDGIGKIS A
Sbjct: 481 IKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARR 538
Query: 1783 LAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFR 1962
+A CG Y PSAFQIRYGGYKGVVA+DP SS KLSLR SM K++S+N +DVL W+K++
Sbjct: 539 VASKCGLQYTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQ 598
Query: 1963 PCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVII 2142
PC+LNRQ++TLLSTLGV+D E Q+E +++LD IL A E L++MS GEN N++
Sbjct: 599 PCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILK 658
Query: 2143 NMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVLNGRCLMGCLDEYRILEYGEIF 2322
ML CGY P EP+LSM+L FRA+KLL+L+ ++RIF+ NGR +MGCLDE R LEYG++F
Sbjct: 659 AMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVF 718
Query: 2323 VQVT-----EPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLH 2487
VQ T E LH T+ I+ G V+VAKNPCLHPGD+R+LRAVD P LH
Sbjct: 719 VQFTGAGHREFSEDLHPFNNSRSTNC-NFILKGNVVVAKNPCLHPGDIRVLRAVDVPALH 777
Query: 2488 HLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCW 2589
H+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCW
Sbjct: 778 HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCW 811
>gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 935
Score = 647 bits (1669), Expect = 0.0
Identities = 355/732 (48%), Positives = 475/732 (64%), Gaps = 10/732 (1%)
Frame = +1
Query: 424 HIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVR 603
H+ L+FGCQ+S +++AVL + ++V +F +K F L+ Y+L LS+ N+
Sbjct: 94 HMDGITLNFGCQISDDKFAVLGS--TEVSIKFGIGLKNFFFFLSSGSADYKLQLSYENIW 151
Query: 604 YMHRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGLWIAEFFKFGSNNQWIRTTDFTR 783
+ + +L+IQ++ AP+IY + +S FFK ++QW+RTTDFT
Sbjct: 152 QVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS-------CYSFFKETPDDQWVRTTDFTP 204
Query: 784 NFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLSLHINXXXXXXXR--LVPSXXXX 957
++ IG S+S+CL+ G + SF++Y + N++L + LVP+
Sbjct: 205 SW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPP 263
Query: 958 XXXXXXYKILFQVNALVQEGILSWPALGREFFRLLEPKSEEYVGRILFALQEISYSGPT- 1134
YKILF++++LVQ G + PAL FFRL++P+ V I AL+++ Y
Sbjct: 264 EGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRN-VACIEQALEKLYYLKECC 322
Query: 1135 YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIR 1308
Y P + L + Y K + + LDDGL+ V RV VTP KVY GPEV+VSNRV+R
Sbjct: 323 YDPVRWLTEQYDGYFKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 382
Query: 1309 QFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXF 1488
+SE ID+F+RVSF+DE+ +L++T+L K G T +Y RILS F
Sbjct: 383 NYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIYERILSTLRKGFVIGDKKF 442
Query: 1489 EFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTL 1668
EFLAFSSSQLR++S+WMFAS +TA IR+WMG+F I+NVAK AAR GQ F SS++TL
Sbjct: 443 EFLAFSSSQLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRETL 502
Query: 1669 CVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYK 1848
V E+E D+ + SYVFSDGIGKIS A ++A +CG Y PSAFQIRYGGYK
Sbjct: 503 SVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARKVASNCGLQYTPSAFQIRYGGYK 560
Query: 1849 GVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRF 2028
GVVA+DP SS KLSLR SM K++S+N +DVL W+K++PC+LNRQ++TLLSTLGV+D
Sbjct: 561 GVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLVTLLSTLGVKDDVL 620
Query: 2029 ENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAF 2208
E Q+E +++LD IL A E L++MS GEN N++ ML CGY P EP+LSM+L F
Sbjct: 621 EQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTF 680
Query: 2209 RAAKLLELKHKARIFVLNGRCLMGCLDEYRILEYGEIFVQVT-----EPRSSLHFGTTGN 2373
RA+KLL+L+ K+RIF+ NGR +MGCLDE R LEYG++FVQ T E LH
Sbjct: 681 RASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSR 740
Query: 2374 QTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSG 2553
T+ I+ G V+VAKNPCLHPGD+R+LRAVD P LHH+VDCVVFPQKGKRPHPNECSG
Sbjct: 741 STNC-NFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSG 799
Query: 2554 SDLDGDLYFVCW 2589
SDLDGD+YFVCW
Sbjct: 800 SDLDGDIYFVCW 811
>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1065
Score = 645 bits (1663), Expect = 0.0
Identities = 355/732 (48%), Positives = 474/732 (64%), Gaps = 10/732 (1%)
Frame = +1
Query: 424 HIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVR 603
H+ L+FGCQ+S +++AVL + ++V +F +KK++ L+ Y+L LS+ N+
Sbjct: 93 HMDGITLNFGCQISDDKFAVLGS--TEVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIW 150
Query: 604 YMHRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGLWIAEFFKFGSNNQWIRTTDFTR 783
+ + +L+IQ++ AP+IY + +S FFK ++QW+RTTDF
Sbjct: 151 QVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS-------CYSFFKETPDDQWVRTTDFAP 203
Query: 784 NFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLSLHINXXXXXXXR--LVPSXXXX 957
++ IG S+S+CL+ G + SF++Y + N++L + LVP+
Sbjct: 204 SW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQPP 262
Query: 958 XXXXXXYKILFQVNALVQEGILSWPALGREFFRLLEPKSEEYVGRILFALQEISYSGPT- 1134
YKILF++++LVQ G + P+L FFRL++P+ V I AL+++ Y
Sbjct: 263 EGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDPQRRN-VACIEQALEKLYYLKECC 321
Query: 1135 YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIR 1308
Y P + L + Y K + + LDDGL+ V RV VTP KVY GPEV+VSNRV+R
Sbjct: 322 YDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 381
Query: 1309 QFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXF 1488
+SE ID+F+RVSF+DE+ +L++T+L K G T +Y RILS F
Sbjct: 382 NYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIRTNIYERILSTMQKGFVIGDKKF 441
Query: 1489 EFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTL 1668
EFLAFSSSQLR++S+WMFAS +TA IR WMG+F I+NVAK AAR+GQ F SSK+TL
Sbjct: 442 EFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETL 501
Query: 1669 CVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEELAVHCGCDYVPSAFQIRYGGYK 1848
V E+E D+ + SYVFSDGIGKIS A +A CG Y PSAFQIRYGGYK
Sbjct: 502 SVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYK 559
Query: 1849 GVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRF 2028
GVVA+DP SS KLSLR SM K++S+N +DVL W+K++PC+LNRQ+ITLLSTLGV+D
Sbjct: 560 GVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLITLLSTLGVKDDIL 619
Query: 2029 ENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAF 2208
E Q+E +++LD IL A E L++MS GEN N++ ML CGY P EP+LSM+L F
Sbjct: 620 EQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTF 679
Query: 2209 RAAKLLELKHKARIFVLNGRCLMGCLDEYRILEYGEIFVQVT-----EPRSSLHFGTTGN 2373
RA+KLL+L+ K+RIF+ NGR +MGCLDE R LEYG++FVQ T E LH
Sbjct: 680 RASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSR 739
Query: 2374 QTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLHHLVDCVVFPQKGKRPHPNECSG 2553
T+ I+ G V+VAKNPCLHPGD+R+LRAVD P LHH+VDCVVFPQKGKRPHPNECSG
Sbjct: 740 STNC-NFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSG 798
Query: 2554 SDLDGDLYFVCW 2589
SDLDGD+YFVCW
Sbjct: 799 SDLDGDIYFVCW 810
>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
tuberosum]
Length = 1115
Score = 644 bits (1660), Expect = 0.0
Identities = 360/754 (47%), Positives = 482/754 (63%), Gaps = 10/754 (1%)
Frame = +1
Query: 358 STLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCDSDVQFEFASDIKK 537
S+ ++A + D+V E H+ L+FGCQ+S +++AVL + ++V +F +KK
Sbjct: 73 SSYLKAREMETDLVQL-WEYVDHMDGITLNFGCQISDDKFAVLGS--TEVSIKFGIGLKK 129
Query: 538 LFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKIYYKEPSSDMGDGL 717
F L+ Y+L LS+ N+ + + +L+IQ++ AP+IY + +S
Sbjct: 130 FFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENS------ 183
Query: 718 WIAEFFKFGSNNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIKNSFYNYKDIRENLS 897
FFK ++QW+RTTDF ++ IG S+S+CL+ G + SF++Y + N++
Sbjct: 184 -CYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNIT 241
Query: 898 LHINXXXXXXXR--LVPSXXXXXXXXXXYKILFQVNALVQEGILSWPALGREFFRLLEPK 1071
L + LVP+ YKILF++++LVQ G + PAL FFRL++P+
Sbjct: 242 LQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQ 301
Query: 1072 SEEYVGRILFALQEISYSGPT-YTPEKSLKKII--YDKKARRYADFNTYLDDGLMRVHRV 1242
V I AL+++ Y Y P + L + Y K + + LDDGL+ V RV
Sbjct: 302 RRN-VACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRV 360
Query: 1243 QVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFATDLCQKMPNGEKKY 1422
VTP KVY GPEV+VSNRV+R +SE ID+F+RVSF+DE+ +L++TDL K G
Sbjct: 361 LVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR 420
Query: 1423 TKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQVTAETIRAWMGNFLS 1602
T +Y RILS FEFLAFSSSQLR++S+WMFAS +TA IR WMG+F
Sbjct: 421 TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQ 480
Query: 1603 IRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVFSDGIGKISVALAEE 1782
I+NVAK AAR+GQ F SS +TL V E+E D+ + SYVFSDGIGKIS A
Sbjct: 481 IKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVKVH--GTSYVFSDGIGKISADFARR 538
Query: 1783 LAVHCGCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFDSENRNVDVLSWTKFR 1962
+A CG + PSAFQIRYGGYKGVVA+DP SS KLSLR SM K++S+N +DVL W+K++
Sbjct: 539 VASKCGLQHTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQ 598
Query: 1963 PCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDMALEVLQIMSGGENHNVII 2142
PC+LNRQ++TLLSTLGV+D E Q+E +++LD IL A E L++MS GEN N++
Sbjct: 599 PCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILK 658
Query: 2143 NMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVLNGRCLMGCLDEYRILEYGEIF 2322
ML CGY P EP+LSM+L FRA+KLL+L+ K+RIF+ NGR +MGCLDE R LEYG++F
Sbjct: 659 AMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRLMMGCLDESRTLEYGQVF 718
Query: 2323 VQVT-----EPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRILRAVDDPRLH 2487
VQ T E LH T+ I+ G V+VAKNPCLHPGD+R+LRAVD P LH
Sbjct: 719 VQFTGSGHREFSEDLHPFNNSRSTNC-NFILKGNVVVAKNPCLHPGDIRVLRAVDVPALH 777
Query: 2488 HLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCW 2589
H+VDCVVFPQKGKRPHPNECSGSDLDGD+YFVCW
Sbjct: 778 HMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCW 811
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 644 bits (1660), Expect = 0.0
Identities = 378/824 (45%), Positives = 512/824 (62%), Gaps = 12/824 (1%)
Frame = +1
Query: 154 RTVKITHIPLGTDANQLTTLLEGILQEKGCVYSAKILKQTNPRHVYAHAIVQLDRSFLAR 333
+T+++ A ++ T LEG + VY+ KI + + + A AIVQ RS A
Sbjct: 3 KTIQVYGFLSDVSAGEVKTFLEGYTGRE-TVYALKI--RQHKKSGRAFAIVQFTRSSDAG 59
Query: 334 KLCTTLP-----ASTLMQATVLPRDMVSKPRESTVHIATRRLHFGCQVSHNRYAVLWTCD 498
+ + ++A + D+V KPR + ++FGCQVS ++ VLW D
Sbjct: 60 LIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKAD 119
Query: 499 SDVQFEFASDIKKLFIELTDRGISYRLVLSFGNVRYMHRYSTDSSRRTYLVIQVYCAPKI 678
+ V F + ++KL L+ Y+L L + N+ + S +L+IQ++ AP+I
Sbjct: 120 N-VTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRI 178
Query: 679 YYKE-PSSDMGDGLWIAEFFKFGSNNQWIRTTDFTRNFSIGNSTSICLELLDGAKDAVIK 855
Y KE P+S+ + +FK ++QW+RTTDFTR+ IG S+ + LEL + +
Sbjct: 179 YEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNFR 238
Query: 856 NSFYNYKDIRENLSLHINXXXXXXXRLVPSXXXXXXXXXXYKILFQVNALVQEGILSWPA 1035
+F YK+ L L LVP ++ILF+VN LVQ G + PA
Sbjct: 239 ENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPA 298
Query: 1036 LGREFFRLLEPKSEEYVGRILFALQEISYSGPT-YTPEKSLKKIIYD-KKARRYADFNTY 1209
L F+RL++P V I AL+++ Y Y P + L + + ++R+Y T
Sbjct: 299 LDDTFYRLVDPCRMHKV-YIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTI 357
Query: 1210 -LDDGLMRVHRVQVTPTKVYLFGPEVDVSNRVIRQFSEYIDDFIRVSFIDEDERQLFATD 1386
LD+GL+ V RVQ+TP++VY GPE++VSNRV+RQF ID+F+R+SF+DE+ ++ +T+
Sbjct: 358 SLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTN 417
Query: 1387 LCQKMPNGEKKYTKLYLRILSXXXXXXXXXXXXFEFLAFSSSQLRESSLWMFASNEQVTA 1566
+ + T +Y RILS FEFLAFSSSQLRE+S WMFAS + +TA
Sbjct: 418 V-----QARGRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTA 472
Query: 1567 ETIRAWMGNFLSIRNVAKCAARMGQCFSSSKKTLCVYESEVEDCNDITIERDSDSYVFSD 1746
IR+WMGNF IRNVAK AAR+GQ FSSS +TL V + E+ DI I +D YVFSD
Sbjct: 473 ADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSD 532
Query: 1747 GIGKISVALAEELAVHC---GCDYVPSAFQIRYGGYKGVVAMDPTSSYKLSLRPSMRKFD 1917
GIGKIS A+++A C GC PSAFQIR GG+KGVVA+DPTSS+KLSLR SM K++
Sbjct: 533 GIGKISAEFAKKVAAKCRLKGC--TPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYE 590
Query: 1918 SENRNVDVLSWTKFRPCFLNRQIITLLSTLGVRDQRFENLQQEDINRLDLILDHKDMALE 2097
SEN +DVL+W+K++PCFLNRQ+ITLLSTLGV D+ FE Q+E +++L+ +L A E
Sbjct: 591 SENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQE 650
Query: 2098 VLQIMSGGENHNVIINMLRCGYSPKDEPYLSMVLHAFRAAKLLELKHKARIFVLNGRCLM 2277
L++MS GEN N++ ML CGY P EP+LSM+L FRA+KLLEL+ KARIFV GR +M
Sbjct: 651 ALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMM 710
Query: 2278 GCLDEYRILEYGEIFVQVTEPRSSLHFGTTGNQTSIRKRIITGTVIVAKNPCLHPGDVRI 2457
GCLDE R L YG++FVQ + RS R+ I+ G VIVAKNPCLHPGDVR+
Sbjct: 711 GCLDETRTLNYGQVFVQFSGSRSE------------RRFIVQGKVIVAKNPCLHPGDVRV 758
Query: 2458 LRAVDDPRLHHLVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCW 2589
LRAV+ P LHH+VDCVVFPQKG RPHPNECSGSDLDGD+YFVCW
Sbjct: 759 LRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCW 802