BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00003051
         (625 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28783.3| unnamed protein product [Vitis vinifera]              339   4e-91
ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis v...   339   4e-91
ref|XP_006856202.1| hypothetical protein AMTR_s00059p00193620 [A...   338   9e-91
ref|XP_001773330.1| predicted protein [Physcomitrella patens] gi...   332   5e-89
ref|XP_004296769.1| PREDICTED: DNA topoisomerase 1-like [Fragari...   330   3e-88
ref|XP_006279572.1| hypothetical protein CARUB_v10025842mg [Caps...   329   3e-88
ref|NP_200341.1| DNA topoisomerase 1 [Arabidopsis thaliana] gi|2...   328   1e-87
ref|NP_001190543.1| DNA topoisomerase 1 [Arabidopsis thaliana] g...   328   1e-87
dbj|BAD93853.1| DNA topoisomerase I [Arabidopsis thaliana]            328   1e-87
gb|AAM14018.1| putative DNA topoisomerase I [Arabidopsis thaliana]    328   1e-87
ref|XP_006401468.1| hypothetical protein EUTSA_v10012622mg [Eutr...   327   1e-87
ref|XP_002266885.1| PREDICTED: DNA topoisomerase 1 [Vitis vinife...   327   2e-87
gb|EOY12192.1| DNA topoisomerase I alpha isoform 4, partial [The...   326   3e-87
gb|EOY12191.1| DNA topoisomerase I alpha isoform 3 [Theobroma ca...   326   3e-87
gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma ca...   326   3e-87
ref|XP_001773082.1| predicted protein [Physcomitrella patens] gi...   326   3e-87
ref|XP_002866086.1| TOP1BETA [Arabidopsis lyrata subsp. lyrata] ...   323   2e-86
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]                 323   2e-86
gb|EMJ02410.1| hypothetical protein PRUPE_ppa001622mg [Prunus pe...   321   1e-85
ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform ...   320   2e-85

>emb|CBI28783.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  339 bits (869), Expect = 4e-91
 Identities = 165/205 (80%), Positives = 187/205 (91%), Gaps = 1/205 (0%)
 Frame = +3

Query: 3   WKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARMLKNYIEDIRK 182
           WKE+RHDNTVTWLA+WNDPINPKEFKYVFLAASS+LKG SDKEKYEKAR+LK+YI++IR 
Sbjct: 363 WKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRA 422

Query: 183 TYSMNFTSGDNKQKQIAVATYLIDQLALRAGNEKDDDEADTVGCCTLKVENVALVEPSSI 362
           TY+ +FT+ D  ++QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKVENVALV P+ +
Sbjct: 423 TYTKDFTNKDTMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVALVPPNKL 482

Query: 363 QFDFLGKDSIRYFNTVDVKPEVYKAIGQFKKGKRESDDLFDELDTSKLNAHLKELMPGLT 542
           +FDFLGKDSIRYFNTV+V+  VYKAIGQFK GK   DDLFD+LDTSKLNAHLKELMPGLT
Sbjct: 483 EFDFLGKDSIRYFNTVEVELPVYKAIGQFKTGKSGGDDLFDKLDTSKLNAHLKELMPGLT 542

Query: 543 AKVFRTYNASITLDRLL-QETKGVD 614
           AKVFRTYNASITLD +L +E +G D
Sbjct: 543 AKVFRTYNASITLDEMLNREARGGD 567


>ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
          Length = 883

 Score =  339 bits (869), Expect = 4e-91
 Identities = 165/205 (80%), Positives = 187/205 (91%), Gaps = 1/205 (0%)
 Frame = +3

Query: 3    WKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARMLKNYIEDIRK 182
            WKE+RHDNTVTWLA+WNDPINPKEFKYVFLAASS+LKG SDKEKYEKAR+LK+YI++IR 
Sbjct: 522  WKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRA 581

Query: 183  TYSMNFTSGDNKQKQIAVATYLIDQLALRAGNEKDDDEADTVGCCTLKVENVALVEPSSI 362
            TY+ +FT+ D  ++QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKVENVALV P+ +
Sbjct: 582  TYTKDFTNKDTMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVALVPPNKL 641

Query: 363  QFDFLGKDSIRYFNTVDVKPEVYKAIGQFKKGKRESDDLFDELDTSKLNAHLKELMPGLT 542
            +FDFLGKDSIRYFNTV+V+  VYKAIGQFK GK   DDLFD+LDTSKLNAHLKELMPGLT
Sbjct: 642  EFDFLGKDSIRYFNTVEVELPVYKAIGQFKTGKSGGDDLFDKLDTSKLNAHLKELMPGLT 701

Query: 543  AKVFRTYNASITLDRLL-QETKGVD 614
            AKVFRTYNASITLD +L +E +G D
Sbjct: 702  AKVFRTYNASITLDEMLNREARGGD 726


>ref|XP_006856202.1| hypothetical protein AMTR_s00059p00193620 [Amborella trichopoda]
            gi|548860061|gb|ERN17669.1| hypothetical protein
            AMTR_s00059p00193620 [Amborella trichopoda]
          Length = 884

 Score =  338 bits (866), Expect = 9e-91
 Identities = 163/202 (80%), Positives = 183/202 (90%)
 Frame = +3

Query: 3    WKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARMLKNYIEDIRK 182
            WKEI+HDNTVTWLA+WNDPINPKE KYVFLAASS+LKG SDKEKYEKAR+LK+YI+ IR+
Sbjct: 537  WKEIKHDNTVTWLAFWNDPINPKELKYVFLAASSSLKGQSDKEKYEKARLLKDYIDSIRE 596

Query: 183  TYSMNFTSGDNKQKQIAVATYLIDQLALRAGNEKDDDEADTVGCCTLKVENVALVEPSSI 362
            TY+ +F S D  ++Q A+ATYLID+LALRAGNEKDDDEADTVGCCTLKVENV L+  SS+
Sbjct: 597  TYTKHFNSKDIMKRQTAIATYLIDRLALRAGNEKDDDEADTVGCCTLKVENVTLLPLSSL 656

Query: 363  QFDFLGKDSIRYFNTVDVKPEVYKAIGQFKKGKRESDDLFDELDTSKLNAHLKELMPGLT 542
            QFDFLGKDSIRYFNTV+V P VYKAIG F+ GK+E DDLFD+LDTSKLNAHLKELMPGLT
Sbjct: 657  QFDFLGKDSIRYFNTVEVLPPVYKAIGDFRSGKKEGDDLFDKLDTSKLNAHLKELMPGLT 716

Query: 543  AKVFRTYNASITLDRLLQETKG 608
            AKVFRTYNAS TLDRLLQ+T G
Sbjct: 717  AKVFRTYNASETLDRLLQDTTG 738


>ref|XP_001773330.1| predicted protein [Physcomitrella patens]
           gi|162675372|gb|EDQ61868.1| predicted protein
           [Physcomitrella patens]
          Length = 632

 Score =  332 bits (851), Expect = 5e-89
 Identities = 160/202 (79%), Positives = 181/202 (89%)
 Frame = +3

Query: 3   WKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARMLKNYIEDIRK 182
           WKEIRHDNTVTWLAYW DPIN KEFKYVFLAASS+LKG SD +KYEKARMLK+YI+DIR+
Sbjct: 272 WKEIRHDNTVTWLAYWKDPINDKEFKYVFLAASSSLKGQSDMQKYEKARMLKDYIDDIRR 331

Query: 183 TYSMNFTSGDNKQKQIAVATYLIDQLALRAGNEKDDDEADTVGCCTLKVENVALVEPSSI 362
           TY+ +F+S D  ++QIAVATYLID+LALRAGNEKD+DEADTVGCC+LKVE+V LV P S+
Sbjct: 332 TYTHDFSSSDPTKQQIAVATYLIDRLALRAGNEKDEDEADTVGCCSLKVEHVTLVAPKSL 391

Query: 363 QFDFLGKDSIRYFNTVDVKPEVYKAIGQFKKGKRESDDLFDELDTSKLNAHLKELMPGLT 542
           QFDFLGKDSIRYFNTV+V   VYKAIGQFKKGK+E DDLF+ LDT+KLN HLK +MP LT
Sbjct: 392 QFDFLGKDSIRYFNTVEVDERVYKAIGQFKKGKKEGDDLFERLDTTKLNLHLKGIMPSLT 451

Query: 543 AKVFRTYNASITLDRLLQETKG 608
           AKVFRTYNASITLD LLQ+T G
Sbjct: 452 AKVFRTYNASITLDNLLQDTTG 473


>ref|XP_004296769.1| PREDICTED: DNA topoisomerase 1-like [Fragaria vesca subsp. vesca]
          Length = 838

 Score =  330 bits (845), Expect = 3e-88
 Identities = 162/206 (78%), Positives = 184/206 (89%), Gaps = 1/206 (0%)
 Frame = +3

Query: 3    WKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARMLKNYIEDIRK 182
            WKE+RHDNTVTWLA+WNDPINPKEFKYVFLAASS+LKG SDKEKYEKARMLK YI DIR 
Sbjct: 477  WKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARMLKEYIGDIRA 536

Query: 183  TYSMNFTSGDNKQKQIAVATYLIDQLALRAGNEKDDDEADTVGCCTLKVENVALVEPSSI 362
             Y+ +FTS D  ++QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKVENV  + P+S+
Sbjct: 537  AYTKDFTSRDAAKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKAIPPNSL 596

Query: 363  QFDFLGKDSIRYFNTVDVKPEVYKAIGQFKKGKRESDDLFDELDTSKLNAHLKELMPGLT 542
            +F+FLGKDSIRY NTV+V+P VYK I +F++GK++SDDLFD+LDTSKLNAHLKELMPGLT
Sbjct: 597  EFNFLGKDSIRYENTVEVEPAVYKEIKKFQEGKKDSDDLFDKLDTSKLNAHLKELMPGLT 656

Query: 543  AKVFRTYNASITLD-RLLQETKGVDI 617
            AKVFRTYNASITLD  L QET   D+
Sbjct: 657  AKVFRTYNASITLDNELNQETTEGDV 682


>ref|XP_006279572.1| hypothetical protein CARUB_v10025842mg [Capsella rubella]
            gi|482548276|gb|EOA12470.1| hypothetical protein
            CARUB_v10025842mg [Capsella rubella]
          Length = 923

 Score =  329 bits (844), Expect = 3e-88
 Identities = 161/208 (77%), Positives = 186/208 (89%), Gaps = 1/208 (0%)
 Frame = +3

Query: 3    WKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARMLKNYIEDIRK 182
            WKE++HDNTVTWLA+WNDPINP+EFKYVFLAASSALKGLSDKEKYEKAR L ++I++IR 
Sbjct: 557  WKEVKHDNTVTWLAFWNDPINPREFKYVFLAASSALKGLSDKEKYEKARNLSDHIDNIRT 616

Query: 183  TYSMNFTSGDNKQKQIAVATYLIDQLALRAGNEKDDDEADTVGCCTLKVENVALVEPSSI 362
            TY+ NFT+ D  ++QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKV NV  + P+ I
Sbjct: 617  TYTKNFTAKDVTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKI 676

Query: 363  QFDFLGKDSIRYFNTVDVKPEVYKAIGQFKKGKRESDDLFDELDTSKLNAHLKELMPGLT 542
            +FDFLGKDSI+Y NTV+V+P VYKAIGQF+ GK ++DDLFD LDTSKLNAHLKEL+PGLT
Sbjct: 677  KFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDMLDTSKLNAHLKELVPGLT 736

Query: 543  AKVFRTYNASITLDRLL-QETKGVDIPQ 623
            AKVFRTYNASITLD +L QETK  D+ Q
Sbjct: 737  AKVFRTYNASITLDEMLSQETKDGDVNQ 764


>ref|NP_200341.1| DNA topoisomerase 1 [Arabidopsis thaliana]
            gi|267146|sp|P30181.1|TOP1_ARATH RecName: Full=DNA
            topoisomerase 1; AltName: Full=DNA topoisomerase I
            gi|16558|emb|CAA40763.1| topoisomerase I [Arabidopsis
            thaliana] gi|9758162|dbj|BAB08547.1| DNA topoisomerase I
            [Arabidopsis thaliana] gi|332009229|gb|AED96612.1| DNA
            topoisomerase 1 [Arabidopsis thaliana]
            gi|445137|prf||1908437A topoisomerase I
          Length = 916

 Score =  328 bits (840), Expect = 1e-87
 Identities = 160/208 (76%), Positives = 184/208 (88%), Gaps = 1/208 (0%)
 Frame = +3

Query: 3    WKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARMLKNYIEDIRK 182
            WKE++HDNTVTWLA+W DPINPKEFKYVFL A S+LKGLSDKEKYEKAR L ++I++IR 
Sbjct: 552  WKEVKHDNTVTWLAFWADPINPKEFKYVFLGAGSSLKGLSDKEKYEKARNLTDHIDNIRT 611

Query: 183  TYSMNFTSGDNKQKQIAVATYLIDQLALRAGNEKDDDEADTVGCCTLKVENVALVEPSSI 362
            TY+ NFT+ D K +QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKV NV  + P+ I
Sbjct: 612  TYTKNFTAKDVKMRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKI 671

Query: 363  QFDFLGKDSIRYFNTVDVKPEVYKAIGQFKKGKRESDDLFDELDTSKLNAHLKELMPGLT 542
            +FDFLGKDSI+Y NTV+V+P VYKAIGQF+ GK ++DDLFDELDTSKLNAHLKEL+PGLT
Sbjct: 672  KFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLT 731

Query: 543  AKVFRTYNASITLDRLL-QETKGVDIPQ 623
            AKVFRTYNASITLD +L QETK  D+ Q
Sbjct: 732  AKVFRTYNASITLDEMLSQETKDGDVTQ 759


>ref|NP_001190543.1| DNA topoisomerase 1 [Arabidopsis thaliana]
            gi|332009230|gb|AED96613.1| DNA topoisomerase 1
            [Arabidopsis thaliana]
          Length = 933

 Score =  328 bits (840), Expect = 1e-87
 Identities = 160/208 (76%), Positives = 184/208 (88%), Gaps = 1/208 (0%)
 Frame = +3

Query: 3    WKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARMLKNYIEDIRK 182
            WKE++HDNTVTWLA+W DPINPKEFKYVFL A S+LKGLSDKEKYEKAR L ++I++IR 
Sbjct: 552  WKEVKHDNTVTWLAFWADPINPKEFKYVFLGAGSSLKGLSDKEKYEKARNLTDHIDNIRT 611

Query: 183  TYSMNFTSGDNKQKQIAVATYLIDQLALRAGNEKDDDEADTVGCCTLKVENVALVEPSSI 362
            TY+ NFT+ D K +QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKV NV  + P+ I
Sbjct: 612  TYTKNFTAKDVKMRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKI 671

Query: 363  QFDFLGKDSIRYFNTVDVKPEVYKAIGQFKKGKRESDDLFDELDTSKLNAHLKELMPGLT 542
            +FDFLGKDSI+Y NTV+V+P VYKAIGQF+ GK ++DDLFDELDTSKLNAHLKEL+PGLT
Sbjct: 672  KFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLT 731

Query: 543  AKVFRTYNASITLDRLL-QETKGVDIPQ 623
            AKVFRTYNASITLD +L QETK  D+ Q
Sbjct: 732  AKVFRTYNASITLDEMLSQETKDGDVTQ 759


>dbj|BAD93853.1| DNA topoisomerase I [Arabidopsis thaliana]
          Length = 396

 Score =  328 bits (840), Expect = 1e-87
 Identities = 160/208 (76%), Positives = 184/208 (88%), Gaps = 1/208 (0%)
 Frame = +3

Query: 3   WKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARMLKNYIEDIRK 182
           WKE++HDNTVTWLA+W DPINPKEFKYVFL A S+LKGLSDKEKYEKAR L ++I++IR 
Sbjct: 32  WKEVKHDNTVTWLAFWADPINPKEFKYVFLGAGSSLKGLSDKEKYEKARNLTDHIDNIRT 91

Query: 183 TYSMNFTSGDNKQKQIAVATYLIDQLALRAGNEKDDDEADTVGCCTLKVENVALVEPSSI 362
           TY+ NFT+ D K +QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKV NV  + P+ I
Sbjct: 92  TYTKNFTAKDVKMRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKI 151

Query: 363 QFDFLGKDSIRYFNTVDVKPEVYKAIGQFKKGKRESDDLFDELDTSKLNAHLKELMPGLT 542
           +FDFLGKDSI+Y NTV+V+P VYKAIGQF+ GK ++DDLFDELDTSKLNAHLKEL+PGLT
Sbjct: 152 KFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLT 211

Query: 543 AKVFRTYNASITLDRLL-QETKGVDIPQ 623
           AKVFRTYNASITLD +L QETK  D+ Q
Sbjct: 212 AKVFRTYNASITLDEMLSQETKDGDVTQ 239


>gb|AAM14018.1| putative DNA topoisomerase I [Arabidopsis thaliana]
          Length = 514

 Score =  328 bits (840), Expect = 1e-87
 Identities = 160/208 (76%), Positives = 184/208 (88%), Gaps = 1/208 (0%)
 Frame = +3

Query: 3   WKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARMLKNYIEDIRK 182
           WKE++HDNTVTWLA+W DPINPKEFKYVFL A S+LKGLSDKEKYEKAR L ++I++IR 
Sbjct: 150 WKEVKHDNTVTWLAFWADPINPKEFKYVFLGAGSSLKGLSDKEKYEKARNLTDHIDNIRT 209

Query: 183 TYSMNFTSGDNKQKQIAVATYLIDQLALRAGNEKDDDEADTVGCCTLKVENVALVEPSSI 362
           TY+ NFT+ D K +QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKV NV  + P+ I
Sbjct: 210 TYTKNFTAKDVKMRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKI 269

Query: 363 QFDFLGKDSIRYFNTVDVKPEVYKAIGQFKKGKRESDDLFDELDTSKLNAHLKELMPGLT 542
           +FDFLGKDSI+Y NTV+V+P VYKAIGQF+ GK ++DDLFDELDTSKLNAHLKEL+PGLT
Sbjct: 270 KFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLT 329

Query: 543 AKVFRTYNASITLDRLL-QETKGVDIPQ 623
           AKVFRTYNASITLD +L QETK  D+ Q
Sbjct: 330 AKVFRTYNASITLDEMLSQETKDGDVTQ 357


>ref|XP_006401468.1| hypothetical protein EUTSA_v10012622mg [Eutrema salsugineum]
            gi|567179002|ref|XP_006401469.1| hypothetical protein
            EUTSA_v10012622mg [Eutrema salsugineum]
            gi|557102558|gb|ESQ42921.1| hypothetical protein
            EUTSA_v10012622mg [Eutrema salsugineum]
            gi|557102559|gb|ESQ42922.1| hypothetical protein
            EUTSA_v10012622mg [Eutrema salsugineum]
          Length = 904

 Score =  327 bits (839), Expect = 1e-87
 Identities = 158/208 (75%), Positives = 187/208 (89%), Gaps = 1/208 (0%)
 Frame = +3

Query: 3    WKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARMLKNYIEDIRK 182
            WKE++HDNTVTWLA+WNDPINPKEFKYVFLAASSALKGLSDKEKYEKAR LK++I  IR 
Sbjct: 543  WKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARKLKDHIGHIRA 602

Query: 183  TYSMNFTSGDNKQKQIAVATYLIDQLALRAGNEKDDDEADTVGCCTLKVENVALVEPSSI 362
             Y+ +F++ D  ++QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKV NV  + P+ +
Sbjct: 603  AYTKDFSNKDVTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVDCIPPNKL 662

Query: 363  QFDFLGKDSIRYFNTVDVKPEVYKAIGQFKKGKRESDDLFDELDTSKLNAHLKELMPGLT 542
            +FDFLGKDSI+Y NTV+V+P VYKAIGQF+ GK ++DDLFDELDTSKLNAHLKELMPGLT
Sbjct: 663  KFDFLGKDSIQYVNTVEVEPPVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELMPGLT 722

Query: 543  AKVFRTYNASITLDRLL-QETKGVDIPQ 623
            AKVFRTYNASITLD++L +ET+  ++P+
Sbjct: 723  AKVFRTYNASITLDQMLSKETRDGEVPE 750


>ref|XP_002266885.1| PREDICTED: DNA topoisomerase 1 [Vitis vinifera]
            gi|296082698|emb|CBI21703.3| unnamed protein product
            [Vitis vinifera]
          Length = 857

 Score =  327 bits (837), Expect = 2e-87
 Identities = 163/208 (78%), Positives = 183/208 (87%), Gaps = 1/208 (0%)
 Frame = +3

Query: 3    WKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARMLKNYIEDIRK 182
            WKE++HDNTVTWLA+WNDPINPKEFKYVFLAASS+LKG SDKEKYEKAR LKNYI+DIR 
Sbjct: 497  WKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKNYIKDIRA 556

Query: 183  TYSMNFTSGDNKQKQIAVATYLIDQLALRAGNEKDDDEADTVGCCTLKVENVALVEPSSI 362
            TY+ +F S D  ++QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKVENV    P+S+
Sbjct: 557  TYTKDFVSKDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVIPEPPNSL 616

Query: 363  QFDFLGKDSIRYFNTVDVKPEVYKAIGQFKKGKRESDDLFDELDTSKLNAHLKELMPGLT 542
            QFDFLGKDSIRY  TV+V+  VYKAI QF+ GK  SDDLFD+LDTSKLNAHLKELMPGLT
Sbjct: 617  QFDFLGKDSIRYEKTVEVELPVYKAIEQFRVGKSGSDDLFDKLDTSKLNAHLKELMPGLT 676

Query: 543  AKVFRTYNASITLDRLL-QETKGVDIPQ 623
            AKVFRTYNASITLD +L ++TK  D+ Q
Sbjct: 677  AKVFRTYNASITLDEMLNKDTKEGDVAQ 704


>gb|EOY12192.1| DNA topoisomerase I alpha isoform 4, partial [Theobroma cacao]
          Length = 733

 Score =  326 bits (836), Expect = 3e-87
 Identities = 159/208 (76%), Positives = 186/208 (89%), Gaps = 1/208 (0%)
 Frame = +3

Query: 3    WKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARMLKNYIEDIRK 182
            WK+I+HDNTVTWLA+WNDPINPKEFKYVFLAASS+LKG SDKEKYEKARMLK+YI++IR 
Sbjct: 416  WKDIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARMLKDYIKNIRA 475

Query: 183  TYSMNFTSGDNKQKQIAVATYLIDQLALRAGNEKDDDEADTVGCCTLKVENVALVEPSSI 362
             Y+ +FT+ D  ++QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKV NV  + P+ +
Sbjct: 476  AYTKDFTTKDVMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKL 535

Query: 363  QFDFLGKDSIRYFNTVDVKPEVYKAIGQFKKGKRESDDLFDELDTSKLNAHLKELMPGLT 542
            +FDFLGKDSI+Y NTV+V+  VYKAIGQF+ GK +SDDLFD+LDTSKLNAHLKELMPGLT
Sbjct: 536  KFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKSKSDDLFDKLDTSKLNAHLKELMPGLT 595

Query: 543  AKVFRTYNASITLDRLL-QETKGVDIPQ 623
            AKVFRTYNASITLD +L +ETK  D+ +
Sbjct: 596  AKVFRTYNASITLDEMLNKETKDGDVAE 623


>gb|EOY12191.1| DNA topoisomerase I alpha isoform 3 [Theobroma cacao]
            gi|508720296|gb|EOY12193.1| DNA topoisomerase I alpha
            isoform 3 [Theobroma cacao]
          Length = 836

 Score =  326 bits (836), Expect = 3e-87
 Identities = 159/208 (76%), Positives = 186/208 (89%), Gaps = 1/208 (0%)
 Frame = +3

Query: 3    WKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARMLKNYIEDIRK 182
            WK+I+HDNTVTWLA+WNDPINPKEFKYVFLAASS+LKG SDKEKYEKARMLK+YI++IR 
Sbjct: 543  WKDIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARMLKDYIKNIRA 602

Query: 183  TYSMNFTSGDNKQKQIAVATYLIDQLALRAGNEKDDDEADTVGCCTLKVENVALVEPSSI 362
             Y+ +FT+ D  ++QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKV NV  + P+ +
Sbjct: 603  AYTKDFTTKDVMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKL 662

Query: 363  QFDFLGKDSIRYFNTVDVKPEVYKAIGQFKKGKRESDDLFDELDTSKLNAHLKELMPGLT 542
            +FDFLGKDSI+Y NTV+V+  VYKAIGQF+ GK +SDDLFD+LDTSKLNAHLKELMPGLT
Sbjct: 663  KFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKSKSDDLFDKLDTSKLNAHLKELMPGLT 722

Query: 543  AKVFRTYNASITLDRLL-QETKGVDIPQ 623
            AKVFRTYNASITLD +L +ETK  D+ +
Sbjct: 723  AKVFRTYNASITLDEMLNKETKDGDVAE 750


>gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
            gi|508720293|gb|EOY12190.1| DNA topoisomerase I alpha
            isoform 1 [Theobroma cacao]
          Length = 904

 Score =  326 bits (836), Expect = 3e-87
 Identities = 159/208 (76%), Positives = 186/208 (89%), Gaps = 1/208 (0%)
 Frame = +3

Query: 3    WKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARMLKNYIEDIRK 182
            WK+I+HDNTVTWLA+WNDPINPKEFKYVFLAASS+LKG SDKEKYEKARMLK+YI++IR 
Sbjct: 543  WKDIKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARMLKDYIKNIRA 602

Query: 183  TYSMNFTSGDNKQKQIAVATYLIDQLALRAGNEKDDDEADTVGCCTLKVENVALVEPSSI 362
             Y+ +FT+ D  ++QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKV NV  + P+ +
Sbjct: 603  AYTKDFTTKDVMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKL 662

Query: 363  QFDFLGKDSIRYFNTVDVKPEVYKAIGQFKKGKRESDDLFDELDTSKLNAHLKELMPGLT 542
            +FDFLGKDSI+Y NTV+V+  VYKAIGQF+ GK +SDDLFD+LDTSKLNAHLKELMPGLT
Sbjct: 663  KFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKSKSDDLFDKLDTSKLNAHLKELMPGLT 722

Query: 543  AKVFRTYNASITLDRLL-QETKGVDIPQ 623
            AKVFRTYNASITLD +L +ETK  D+ +
Sbjct: 723  AKVFRTYNASITLDEMLNKETKDGDVAE 750


>ref|XP_001773082.1| predicted protein [Physcomitrella patens]
           gi|162675629|gb|EDQ62122.1| predicted protein
           [Physcomitrella patens]
          Length = 502

 Score =  326 bits (836), Expect = 3e-87
 Identities = 156/202 (77%), Positives = 181/202 (89%)
 Frame = +3

Query: 3   WKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARMLKNYIEDIRK 182
           WKE+RHDNTVTWLAYW DPIN KEFKYVFLAASS+LKG SD  KYEKAR LK+YI++IR+
Sbjct: 142 WKEVRHDNTVTWLAYWKDPINDKEFKYVFLAASSSLKGQSDMLKYEKARTLKDYIDNIRR 201

Query: 183 TYSMNFTSGDNKQKQIAVATYLIDQLALRAGNEKDDDEADTVGCCTLKVENVALVEPSSI 362
           TY+ +F+S D  ++QIAVATYLID+LALRAGNEKD+DEADTVGCC+LKVE+V+L+ P S+
Sbjct: 202 TYTKDFSSSDPTKQQIAVATYLIDRLALRAGNEKDEDEADTVGCCSLKVEHVSLIAPKSL 261

Query: 363 QFDFLGKDSIRYFNTVDVKPEVYKAIGQFKKGKRESDDLFDELDTSKLNAHLKELMPGLT 542
           QFDFLGKDSIRYFNTV+V   VYKAIGQFKKGK+  DDLF+ LDT+KLN HLK +MPGLT
Sbjct: 262 QFDFLGKDSIRYFNTVEVDERVYKAIGQFKKGKKGGDDLFERLDTTKLNLHLKGIMPGLT 321

Query: 543 AKVFRTYNASITLDRLLQETKG 608
           AKVFRTYNASITLD LLQ+T+G
Sbjct: 322 AKVFRTYNASITLDTLLQDTRG 343


>ref|XP_002866086.1| TOP1BETA [Arabidopsis lyrata subsp. lyrata]
            gi|297311921|gb|EFH42345.1| TOP1BETA [Arabidopsis lyrata
            subsp. lyrata]
          Length = 922

 Score =  323 bits (829), Expect = 2e-86
 Identities = 160/208 (76%), Positives = 183/208 (87%), Gaps = 1/208 (0%)
 Frame = +3

Query: 3    WKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARMLKNYIEDIRK 182
            WKE++HDNTVTWLA+W DPIN KEFKYVFLA SSA+KGLSDKEKYEKAR L ++I++IR 
Sbjct: 556  WKEVKHDNTVTWLAFWVDPINQKEFKYVFLAPSSAMKGLSDKEKYEKARNLTDHIDNIRT 615

Query: 183  TYSMNFTSGDNKQKQIAVATYLIDQLALRAGNEKDDDEADTVGCCTLKVENVALVEPSSI 362
            TY+ NFT+ D   KQIAVATYLID+LALRAGNEKDDDEADTVGCCTLKV NV  + P+ I
Sbjct: 616  TYTKNFTAKDVTTKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKI 675

Query: 363  QFDFLGKDSIRYFNTVDVKPEVYKAIGQFKKGKRESDDLFDELDTSKLNAHLKELMPGLT 542
            +FDFLGKDSI+Y NTV+V+P VYKAIGQF+ GK ++DDLFDELDTSKLNAHLKEL+PGLT
Sbjct: 676  KFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLT 735

Query: 543  AKVFRTYNASITLDRLL-QETKGVDIPQ 623
            AKVFRTYNASITLD +L QETK  D+ Q
Sbjct: 736  AKVFRTYNASITLDEMLSQETKDGDLNQ 763


>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
          Length = 910

 Score =  323 bits (829), Expect = 2e-86
 Identities = 161/208 (77%), Positives = 181/208 (87%), Gaps = 1/208 (0%)
 Frame = +3

Query: 3    WKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARMLKNYIEDIRK 182
            WKE+RHDNTVTWLA+WNDPINPKEFKYVFLAASS LKGLSDKEKYEKAR+LK+YI+ IR 
Sbjct: 547  WKEVRHDNTVTWLAFWNDPINPKEFKYVFLAASSTLKGLSDKEKYEKARLLKDYIQGIRA 606

Query: 183  TYSMNFTSGDNKQKQIAVATYLIDQLALRAGNEKDDDEADTVGCCTLKVENVALVEPSSI 362
             Y+ +F S D  +KQIAVATYLID+LALRAGNEKDDDEADTVGCCTLKVENV  V P+ +
Sbjct: 607  AYTKDFASKDPTKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNIL 666

Query: 363  QFDFLGKDSIRYFNTVDVKPEVYKAIGQFKKGKRESDDLFDELDTSKLNAHLKELMPGLT 542
            +FDFLGKDSIRY N V+V+  V+KAI QF+ GK  S DLFD LDTSKLNAHLKELMPGLT
Sbjct: 667  KFDFLGKDSIRYQNEVEVEAAVFKAIQQFRSGKEGSSDLFDLLDTSKLNAHLKELMPGLT 726

Query: 543  AKVFRTYNASITLDRLL-QETKGVDIPQ 623
            AKVFRTYNASITLD +L +ETKG D+ +
Sbjct: 727  AKVFRTYNASITLDDMLSRETKGGDVAE 754


>gb|EMJ02410.1| hypothetical protein PRUPE_ppa001622mg [Prunus persica]
          Length = 790

 Score =  321 bits (822), Expect = 1e-85
 Identities = 159/208 (76%), Positives = 182/208 (87%), Gaps = 1/208 (0%)
 Frame = +3

Query: 3    WKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARMLKNYIEDIRK 182
            WKE+RHDNTVTWLA+WNDPIN +EFKYVFLA SS+LKG SDKEKYEKARMLK+YI +IR 
Sbjct: 429  WKEVRHDNTVTWLAFWNDPINQREFKYVFLAPSSSLKGQSDKEKYEKARMLKDYIGNIRA 488

Query: 183  TYSMNFTSGDNKQKQIAVATYLIDQLALRAGNEKDDDEADTVGCCTLKVENVALVEPSSI 362
             Y+ +FTS D  ++QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKVENV  + P+S+
Sbjct: 489  AYTRDFTSKDGTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVKAIAPNSL 548

Query: 363  QFDFLGKDSIRYFNTVDVKPEVYKAIGQFKKGKRESDDLFDELDTSKLNAHLKELMPGLT 542
            +F+FLGKDSIRY NTV+V+  VYKAI QF+ GKR  DDLFD LDTSKLNAHLKELMPGLT
Sbjct: 549  EFNFLGKDSIRYENTVEVEIPVYKAIIQFQTGKRGCDDLFDRLDTSKLNAHLKELMPGLT 608

Query: 543  AKVFRTYNASITLDRLL-QETKGVDIPQ 623
            AKVFRTYNASITLD +L +ETK  D+ +
Sbjct: 609  AKVFRTYNASITLDNILNKETKEGDLSE 636


>ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Citrus sinensis]
            gi|568842074|ref|XP_006474978.1| PREDICTED: DNA
            topoisomerase 1-like isoform X2 [Citrus sinensis]
            gi|568842076|ref|XP_006474979.1| PREDICTED: DNA
            topoisomerase 1-like isoform X3 [Citrus sinensis]
            gi|568842078|ref|XP_006474980.1| PREDICTED: DNA
            topoisomerase 1-like isoform X4 [Citrus sinensis]
          Length = 902

 Score =  320 bits (821), Expect = 2e-85
 Identities = 153/202 (75%), Positives = 178/202 (88%)
 Frame = +3

Query: 3    WKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARMLKNYIEDIRK 182
            WKE++HDNTVTWLA+WNDPINPKEFKYVFLAASS+LKG SDKEKYEKAR LK+YI  IR 
Sbjct: 540  WKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHSIRA 599

Query: 183  TYSMNFTSGDNKQKQIAVATYLIDQLALRAGNEKDDDEADTVGCCTLKVENVALVEPSSI 362
             Y+ +F S D  ++QIAVATYLID+LALRAGNEKDDDEADTVGCCTLKV NV  + P+ +
Sbjct: 600  AYTKDFVSRDGTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKL 659

Query: 363  QFDFLGKDSIRYFNTVDVKPEVYKAIGQFKKGKRESDDLFDELDTSKLNAHLKELMPGLT 542
            +FDFLGKDSI+Y NTV+V+  VYKAIGQF+ GK+++DDLFD+LDT+KLNAHLKELMPGLT
Sbjct: 660  KFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLT 719

Query: 543  AKVFRTYNASITLDRLLQETKG 608
            AKVFRTYNASITLD +L +  G
Sbjct: 720  AKVFRTYNASITLDGMLNKGTG 741