BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00002905
         (1269 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEX13478.1| hypothetical protein UMN_4616_01 [Pinus radiata]       187   1e-44
gb|AEX13477.1| hypothetical protein UMN_4616_01 [Pinus taeda]         183   1e-43
gb|AEX13476.1| hypothetical protein UMN_4616_01 [Pinus taeda]         180   1e-42
pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Nor...   105   3e-20
pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Nor...   100   1e-18
pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Nor...   100   1e-18
ref|XP_001306365.1| ankyrin repeat protein [Trichomonas vaginali...    98   8e-18
pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Nor...    91   8e-16
ref|XP_001312218.1| ankyrin repeat protein [Trichomonas vaginali...    91   8e-16
ref|XP_001311114.1| ankyrin repeat protein [Trichomonas vaginali...    91   8e-16
ref|XP_001579112.1| ankyrin repeat protein [Trichomonas vaginali...    91   1e-15
ref|XP_001323756.1| ankyrin repeat protein [Trichomonas vaginali...    91   1e-15
pdb|4HLL|A Chain A, Crystal Structure Of Artificial Ankyrin Repe...    90   2e-15
ref|XP_001309012.1| ankyrin repeat protein [Trichomonas vaginali...    90   2e-15
pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin ...    90   2e-15
pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase ...    90   2e-15
ref|XP_001320368.1| ankyrin repeat protein [Trichomonas vaginali...    90   2e-15
ref|XP_001316432.1| ankyrin repeat protein [Trichomonas vaginali...    90   2e-15
gb|AAO25692.1| ankyrin repeat protein E4_8, partial [synthetic c...    89   3e-15
pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Bin...    89   3e-15

>gb|AEX13478.1| hypothetical protein UMN_4616_01 [Pinus radiata]
          Length = 147

 Score =  187 bits (474), Expect = 1e-44
 Identities = 87/140 (62%), Positives = 112/140 (80%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           LH AVR N+   ++KL+ GG  IQS D++GRT LHWATVLGHE+ALK LLLNT+R++ID 
Sbjct: 7   LHWAVRSNDAGMIKKLLEGGNPIQSSDSIGRTPLHWATVLGHEKALKALLLNTSRQIIDT 66

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
           KDK GRT LHY C+ G  QFAS++IKRGAS  S D +GRTPLHYA Q++  ++V+LL+ N
Sbjct: 67  KDKLGRTPLHYGCAGGRTQFASILIKRGASVNSKDSKGRTPLHYAAQNVKVDMVELLLNN 126

Query: 558 GADKNVGDCDGVASWDMALR 617
           GA+K+VGDC+GV  WD+AL+
Sbjct: 127 GANKDVGDCNGVRPWDLALK 146


>gb|AEX13477.1| hypothetical protein UMN_4616_01 [Pinus taeda]
          Length = 147

 Score =  183 bits (464), Expect = 1e-43
 Identities = 85/140 (60%), Positives = 113/140 (80%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           LH AVR N++  ++KLIAGG  IQS D++G+T LHWATVLGH+EALK LLLNT++++ID 
Sbjct: 7   LHWAVRSNDVGVIKKLIAGGNLIQSSDSIGQTPLHWATVLGHDEALKALLLNTSKQLIDV 66

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
           KDK GRT LHYAC+ G  Q AS +IKRGA   S+D +GRTPLHYA Q++  ++V+LL++N
Sbjct: 67  KDKLGRTSLHYACAEGRTQLASNLIKRGAPVNSMDSKGRTPLHYATQNVKVDMVELLLKN 126

Query: 558 GADKNVGDCDGVASWDMALR 617
           GA+K+V DC+GV  WD+AL+
Sbjct: 127 GAEKDVRDCNGVGPWDLALK 146


>gb|AEX13476.1| hypothetical protein UMN_4616_01 [Pinus taeda]
          Length = 147

 Score =  180 bits (456), Expect = 1e-42
 Identities = 83/140 (59%), Positives = 112/140 (80%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           LH AV+ N++  ++ LIAGG  IQS D++G+T LHWATVLGH+EALK LLLNT++++ID 
Sbjct: 7   LHWAVKSNDVGVIKNLIAGGNLIQSSDSIGQTPLHWATVLGHDEALKALLLNTSKQLIDV 66

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
           KDK GRT LHYAC+ G  Q AS +IKRGA   S+D +GRTPLHYA Q++  ++V+LL++N
Sbjct: 67  KDKLGRTSLHYACAEGRTQLASNLIKRGAPVNSMDSKGRTPLHYATQNVKVDMVELLLKN 126

Query: 558 GADKNVGDCDGVASWDMALR 617
           GA+K+V DC+GV  WD+AL+
Sbjct: 127 GAEKDVKDCNGVGPWDLALK 146


>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
           Structural Genomics Consortium Target Or265.
           gi|414145862|pdb|4HQD|B Chain B, Crystal Structure Of
           Engineered Protein. Northeast Structural Genomics
           Consortium Target Or265
          Length = 169

 Score =  105 bits (263), Expect = 3e-20
 Identities = 62/168 (36%), Positives = 85/168 (50%), Gaps = 7/168 (4%)
 Frame = +3

Query: 177 MDNCAPGLHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNT 356
           M      L  A      D+++ LI  G  + + D+ GRT LH+A   GH+E +K+L+   
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG 60

Query: 357 TRRMIDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEV 536
               ++AKD  GRT LHYA   G+ +   L+I +GA   + D  GRTPLHYA +    E+
Sbjct: 61  AD--VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEI 118

Query: 537 VDLLIENGADKNVGDCDGVASWDMALRLGCSHLF-------GALKSHH 659
           V LLI  GAD N  D DG    D+A   G   +        G L+ HH
Sbjct: 119 VKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLEHHH 166



 Score = 75.9 bits (185), Expect = 3e-11
 Identities = 51/156 (32%), Positives = 76/156 (48%), Gaps = 8/156 (5%)
 Frame = +3

Query: 318 GHEEALKVLLLNTTRRMIDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRT 497
           G+++ +K L+ N     ++A D  GRT LHYA   G+ +   L+I +GA   + D  GRT
Sbjct: 15  GNKDRVKDLIENGAD--VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRT 72

Query: 498 PLHYAVQSMSPEVVDLLIENGADKNVGDCDGVASWDMALRLGCSHLFGALKSHHA-VRVE 674
           PLHYA +    E+V LLI  GAD N  D DG      A + G   +   L S  A V   
Sbjct: 73  PLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS 132

Query: 675 NNE-ETEQSQAKKH------HIKNAENDYLQAKKHH 761
           +++  T    A++H       +   +  +L+   HH
Sbjct: 133 DSDGRTPLDLAREHGNEEIVKLLEKQGGWLEHHHHH 168


>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
           Structural Genomics Consortium Target Or264.
           gi|403072299|pdb|4GPM|B Chain B, Crystal Structure Of
           Engineered Protein. Northeast Structural Genomics
           Consortium Target Or264
          Length = 169

 Score =  100 bits (250), Expect = 1e-18
 Identities = 61/168 (36%), Positives = 85/168 (50%), Gaps = 7/168 (4%)
 Frame = +3

Query: 177 MDNCAPGLHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNT 356
           M      L  A      D+++ LI  G  + + D+ GRT LH A   GH+E +K+L+   
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG 60

Query: 357 TRRMIDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEV 536
               ++AKD  GRT LH+A   G+ +   L+I +GA   + D  GRTPLH+A ++   EV
Sbjct: 61  AD--VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV 118

Query: 537 VDLLIENGADKNVGDCDGVASWDMALRLGCSHLF-------GALKSHH 659
           V LLI  GAD N  D DG    D+A   G   +        G L+ HH
Sbjct: 119 VKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEHHH 166


>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
           Structural Genomics Consortium Target Or267.
           gi|408536131|pdb|4HB5|B Chain B, Crystal Structure Of
           Engineered Protein. Northeast Structural Genomics
           Consortium Target Or267
          Length = 169

 Score =  100 bits (249), Expect = 1e-18
 Identities = 60/168 (35%), Positives = 84/168 (50%), Gaps = 7/168 (4%)
 Frame = +3

Query: 177 MDNCAPGLHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNT 356
           M      L  A      D+++ L+  G    + D+ GRT LH+A   GH+E +K+LL   
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKG 60

Query: 357 TRRMIDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEV 536
                +AKD  GRT LHYA   G+ +   L++ +GA   + D  GRTPLHYA ++   E+
Sbjct: 61  ADP--NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEI 118

Query: 537 VDLLIENGADKNVGDCDGVASWDMALRLGCSHLF-------GALKSHH 659
           V LL+  GAD N  D DG    D+A   G   +        G L+ HH
Sbjct: 119 VKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLEHHH 166


>ref|XP_001306365.1| ankyrin repeat protein [Trichomonas vaginalis G3]
           gi|121887935|gb|EAX93435.1| ankyrin repeat protein,
           putative [Trichomonas vaginalis G3]
          Length = 439

 Score = 97.8 bits (242), Expect = 8e-18
 Identities = 61/185 (32%), Positives = 93/185 (50%)
 Frame = +3

Query: 180 DNCAPGLHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTT 359
           D C+P LH AV  N L+    LI+ G  I + D  G+TALH+AT L +EE + + +    
Sbjct: 103 DKCSP-LHVAVSYNSLETAEILISHGADINAKDVDGKTALHYATELRNEEMISIFISRGV 161

Query: 360 RRMIDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVV 539
              I+AKD +G+T LHYA    N+   +++   G      D  G+T LHYA++  + ++ 
Sbjct: 162 D--INAKDVNGKTALHYAIKNYNIAIINILTSHGIDINVKDVNGKTALHYAIKHCNEDIT 219

Query: 540 DLLIENGADKNVGDCDGVASWDMALRLGCSHLFGALKSHHAVRVENNEETEQSQAKKHHI 719
           ++LI NGAD N  D DG  +   A+      +   L S    RV+ N +    +   H+ 
Sbjct: 220 NILILNGADINAKDVDGKTALHYAVERYNVEIINILISR---RVDINAKDVDGKTALHYA 276

Query: 720 KNAEN 734
               N
Sbjct: 277 VEKHN 281



 Score = 85.1 bits (209), Expect = 6e-14
 Identities = 56/184 (30%), Positives = 88/184 (47%)
 Frame = +3

Query: 183 NCAPGLHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTR 362
           N    LH A++   +  +  L + G  I   D  G+TALH+A    +E+   +L+LN   
Sbjct: 169 NGKTALHYAIKNYNIAIINILTSHGIDINVKDVNGKTALHYAIKHCNEDITNILILNGAD 228

Query: 363 RMIDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVD 542
             I+AKD  G+T LHYA    NV+  +++I R     + D  G+T LHYAV+  + E+++
Sbjct: 229 --INAKDVDGKTALHYAVERYNVEIINILISRRVDINAKDVDGKTALHYAVEKHNAEIIN 286

Query: 543 LLIENGADKNVGDCDGVASWDMALRLGCSHLFGALKSHHAVRVENNEETEQSQAKKHHIK 722
           +LI    D N  D DG  +   A+      +   L S    RV+ N +    +   H+  
Sbjct: 287 ILISRRVDINAKDVDGKTALHYAVERYNVEIINILISR---RVDINAKDVDGKTALHYAV 343

Query: 723 NAEN 734
              N
Sbjct: 344 EKHN 347



 Score = 83.2 bits (204), Expect = 2e-13
 Identities = 51/154 (33%), Positives = 82/154 (53%), Gaps = 1/154 (0%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRM-ID 374
           LH AV  +  + +  LI+    I + D  G+TALH+A    + E + +L+   +RR+ I+
Sbjct: 273 LHYAVEKHNAEIINILISRRVDINAKDVDGKTALHYAVERYNVEIINILI---SRRVDIN 329

Query: 375 AKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIE 554
           AKD  G+T LHYA    N +  +++I  G    + D  G+T LHYAV+  + E++++LI 
Sbjct: 330 AKDVDGKTALHYAVEKHNAEIINILISCGVDINAKDINGKTALHYAVEKHNAEIINILIS 389

Query: 555 NGADKNVGDCDGVASWDMALRLGCSHLFGALKSH 656
            G + N  D DG  +   A+      +   L SH
Sbjct: 390 CGVNINAKDVDGKTALHYAVEKYYIQISNILISH 423



 Score = 74.7 bits (182), Expect = 7e-11
 Identities = 43/128 (33%), Positives = 72/128 (56%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           LH AV    ++ +  LI+    I + D  G+TALH+A    + E + +L+  +    I+A
Sbjct: 306 LHYAVERYNVEIINILISRRVDINAKDVDGKTALHYAVEKHNAEIINILI--SCGVDINA 363

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
           KD +G+T LHYA    N +  +++I  G +  + D  G+T LHYAV+    ++ ++LI +
Sbjct: 364 KDINGKTALHYAVEKHNAEIINILISCGVNINAKDVDGKTALHYAVEKYYIQISNILISH 423

Query: 558 GADKNVGD 581
           G+D N  D
Sbjct: 424 GSDINTKD 431



 Score = 69.3 bits (168), Expect = 3e-09
 Identities = 42/140 (30%), Positives = 70/140 (50%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           +H A + N  D    LIA    + +      + LH A      E  ++L+ +     I+A
Sbjct: 75  IHYAGQYNYKDVAELLIAHNADVNAKGKDKCSPLHVAVSYNSLETAEILISHGAD--INA 132

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
           KD  G+T LHYA    N +  S+ I RG    + D  G+T LHYA+++ +  ++++L  +
Sbjct: 133 KDVDGKTALHYATELRNEEMISIFISRGVDINAKDVNGKTALHYAIKNYNIAIINILTSH 192

Query: 558 GADKNVGDCDGVASWDMALR 617
           G D NV D +G  +   A++
Sbjct: 193 GIDINVKDVNGKTALHYAIK 212



 Score = 67.0 bits (162), Expect = 2e-08
 Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 3/175 (1%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIA-GGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMID 374
           LH AV     D  + L++     + S D  G T++H+A    +++  ++L+ +     ++
Sbjct: 41  LHYAVAYYCFDICKLLLSYSNIDVNSKDTYGYTSIHYAGQYNYKDVAELLIAHNAD--VN 98

Query: 375 AKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIE 554
           AK K   + LH A S  +++ A ++I  GA   + D  G+T LHYA +  + E++ + I 
Sbjct: 99  AKGKDKCSPLHVAVSYNSLETAEILISHGADINAKDVDGKTALHYATELRNEEMISIFIS 158

Query: 555 NGADKNVGDCDGVASWDMALRLGCSHLFGALKSHHA-VRVEN-NEETEQSQAKKH 713
            G D N  D +G  +   A++     +   L SH   + V++ N +T    A KH
Sbjct: 159 RGVDINAKDVNGKTALHYAIKNYNIAIINILTSHGIDINVKDVNGKTALHYAIKH 213


>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
           Structural Genomics Consortium Target Or266.
           gi|402550782|pdb|4GMR|B Chain B, Crystal Structure Of
           Engineered Protein. Northeast Structural Genomics
           Consortium Target Or266
          Length = 169

 Score = 91.3 bits (225), Expect = 8e-16
 Identities = 56/168 (33%), Positives = 82/168 (48%), Gaps = 7/168 (4%)
 Frame = +3

Query: 177 MDNCAPGLHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNT 356
           M      L  A      D+++ L+  G  + + D+ G+T LH A   GH+E +K+LL   
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG 60

Query: 357 TRRMIDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEV 536
                +AKD  G+T LH A   G+ +   L++ +GA   + D  G+TPLH A ++   EV
Sbjct: 61  ADP--NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEV 118

Query: 537 VDLLIENGADKNVGDCDGVASWDMALRLGCSHLF-------GALKSHH 659
           V LL+  GAD N  D DG    D+A   G   +        G L+ HH
Sbjct: 119 VKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEHHH 166



 Score = 67.4 bits (163), Expect = 1e-08
 Identities = 40/115 (34%), Positives = 59/115 (51%)
 Frame = +3

Query: 318 GHEEALKVLLLNTTRRMIDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRT 497
           G+++ +K LL N     ++A D  G+T LH A   G+ +   L++ +GA   + D  G+T
Sbjct: 15  GNKDRVKDLLENGAD--VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKT 72

Query: 498 PLHYAVQSMSPEVVDLLIENGADKNVGDCDGVASWDMALRLGCSHLFGALKSHHA 662
           PLH A ++   EVV LL+  GAD N  D DG     +A   G   +   L S  A
Sbjct: 73  PLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127


>ref|XP_001312218.1| ankyrin repeat protein [Trichomonas vaginalis G3]
           gi|121894057|gb|EAX99288.1| ankyrin repeat protein,
           putative [Trichomonas vaginalis G3]
          Length = 274

 Score = 91.3 bits (225), Expect = 8e-16
 Identities = 55/147 (37%), Positives = 79/147 (53%)
 Frame = +3

Query: 180 DNCAPGLHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTT 359
           + C P LH A R+N ++    LI+ G  I + D  G T LH+A  +   E  ++L+ N  
Sbjct: 80  NGCTP-LHYAARVNSIETSEILISNGADINAKDEDGYTPLHYAARVNSIETSEILISNGA 138

Query: 360 RRMIDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVV 539
              I+AKD+ G T LHYA    +++ + ++I  GA   + D  G TPLHYA +  S E  
Sbjct: 139 D--INAKDEDGYTPLHYAARVNSIETSEILISNGADINAKDEDGYTPLHYAARVNSIETS 196

Query: 540 DLLIENGADKNVGDCDGVASWDMALRL 620
           ++LI NGAD N  D DG      A R+
Sbjct: 197 EILISNGADINAKDEDGYTPLHYAARV 223



 Score = 89.4 bits (220), Expect = 3e-15
 Identities = 54/139 (38%), Positives = 76/139 (54%)
 Frame = +3

Query: 174 DMDNCAPGLHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLN 353
           D D   P LH A R+N ++    LI+ G  I + D  G T LH+A  +   E  ++L+ N
Sbjct: 111 DEDGYTP-LHYAARVNSIETSEILISNGADINAKDEDGYTPLHYAARVNSIETSEILISN 169

Query: 354 TTRRMIDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPE 533
                I+AKD+ G T LHYA    +++ + ++I  GA   + D  G TPLHYA +  S E
Sbjct: 170 GAD--INAKDEDGYTPLHYAARVNSIETSEILISNGADINAKDEDGYTPLHYAARVNSIE 227

Query: 534 VVDLLIENGADKNVGDCDG 590
             ++LI NGAD N  D DG
Sbjct: 228 TSEILISNGADINAKDEDG 246



 Score = 75.5 bits (184), Expect = 4e-11
 Identities = 46/125 (36%), Positives = 66/125 (52%)
 Frame = +3

Query: 246 IAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDAKDKHGRTCLHYACSAG 425
           I+ G  I +    G T LH+A  +   E  ++L+ N     I+AKD+ G T LHYA    
Sbjct: 68  ISNGADINAKTKNGCTPLHYAARVNSIETSEILISNGAD--INAKDEDGYTPLHYAARVN 125

Query: 426 NVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIENGADKNVGDCDGVASWD 605
           +++ + ++I  GA   + D  G TPLHYA +  S E  ++LI NGAD N  D DG     
Sbjct: 126 SIETSEILISNGADINAKDEDGYTPLHYAARVNSIETSEILISNGADINAKDEDGYTPLH 185

Query: 606 MALRL 620
            A R+
Sbjct: 186 YAARV 190



 Score = 75.5 bits (184), Expect = 4e-11
 Identities = 46/128 (35%), Positives = 68/128 (53%)
 Frame = +3

Query: 174 DMDNCAPGLHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLN 353
           D D   P LH A R+N ++    LI+ G  I + D  G T LH+A  +   E  ++L+ N
Sbjct: 144 DEDGYTP-LHYAARVNSIETSEILISNGADINAKDEDGYTPLHYAARVNSIETSEILISN 202

Query: 354 TTRRMIDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPE 533
                I+AKD+ G T LHYA    +++ + ++I  GA   + D  G TPLHYA      E
Sbjct: 203 GAD--INAKDEDGYTPLHYAARVNSIETSEILISNGADINAKDEDGYTPLHYATIYNRKE 260

Query: 534 VVDLLIEN 557
           +V++L  N
Sbjct: 261 IVEILNSN 268


>ref|XP_001311114.1| ankyrin repeat protein [Trichomonas vaginalis G3]
           gi|121892911|gb|EAX98184.1| ankyrin repeat protein,
           putative [Trichomonas vaginalis G3]
          Length = 638

 Score = 91.3 bits (225), Expect = 8e-16
 Identities = 59/172 (34%), Positives = 83/172 (48%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           LH A   N  + +  LI+ G  I   D  GRTALH+A     +E +++L+ +     I+ 
Sbjct: 382 LHYAAEYNSKETVEILISHGININEKDKYGRTALHYAAEYNSKETVEILISHGIN--INE 439

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
           KDK+GRT LHYA    + + A L+I  G +    D  GRT LHYA +  S E V+ LI +
Sbjct: 440 KDKYGRTALHYAAEYNSKEIAKLLISHGININEKDKYGRTALHYAAEYNSKETVEFLISH 499

Query: 558 GADKNVGDCDGVASWDMALRLGCSHLFGALKSHHAVRVENNEETEQSQAKKH 713
           G + N  D D   +   ALR         L  H    +  NE+ +  Q   H
Sbjct: 500 GININEKDNDEKTALHYALRYDRKETAKLLIPH---GININEKDKNGQTALH 548



 Score = 87.4 bits (215), Expect = 1e-14
 Identities = 56/173 (32%), Positives = 83/173 (47%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           LH A   N  +  + LI+ G  I   D  GRTALH+A     +E  K+L+ +     I+ 
Sbjct: 316 LHIAAEYNSKETAKLLISHGININEKDKYGRTALHYAAEYNSKETAKLLISHGIN--INE 373

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
           KDK+GRT LHYA    + +   ++I  G +    D  GRT LHYA +  S E V++LI +
Sbjct: 374 KDKYGRTALHYAAEYNSKETVEILISHGININEKDKYGRTALHYAAEYNSKETVEILISH 433

Query: 558 GADKNVGDCDGVASWDMALRLGCSHLFGALKSHHAVRVENNEETEQSQAKKHH 716
           G + N  D  G  +   A       +   L SH    +  NE+ +  +   H+
Sbjct: 434 GININEKDKYGRTALHYAAEYNSKEIAKLLISH---GININEKDKYGRTALHY 483



 Score = 82.4 bits (202), Expect = 4e-13
 Identities = 55/173 (31%), Positives = 82/173 (47%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           LH A   N  + +  LI+ G  I   D  GRTALH+A     +E  K+L+ +     I+ 
Sbjct: 415 LHYAAEYNSKETVEILISHGININEKDKYGRTALHYAAEYNSKEIAKLLISHGIN--INE 472

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
           KDK+GRT LHYA    + +    +I  G +    D   +T LHYA++    E   LLI +
Sbjct: 473 KDKYGRTALHYAAEYNSKETVEFLISHGININEKDNDEKTALHYALRYDRKETAKLLIPH 532

Query: 558 GADKNVGDCDGVASWDMALRLGCSHLFGALKSHHAVRVENNEETEQSQAKKHH 716
           G + N  D +G  +   AL L    +   L SH    +  NE+ +  +   H+
Sbjct: 533 GININEKDKNGQTALHFALELKYQEITELLISH---GININEKDKYGRTALHY 582



 Score = 73.6 bits (179), Expect = 2e-10
 Identities = 51/160 (31%), Positives = 73/160 (45%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           LH A   N  + +  LI+ G  I   D   +TALH+A     +E  K+L+ +     I+ 
Sbjct: 481 LHYAAEYNSKETVEFLISHGININEKDNDEKTALHYALRYDRKETAKLLIPHGIN--INE 538

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
           KDK+G+T LH+A      +   L+I  G +    D  GRT LHYAV+  S E V+  I  
Sbjct: 539 KDKNGQTALHFALELKYQEITELLISHGININEKDKYGRTALHYAVEYNSKETVEFFISQ 598

Query: 558 GADKNVGDCDGVASWDMALRLGCSHLFGALKSHHAVRVEN 677
           G + N  D  G  +   A           L SH    ++N
Sbjct: 599 GININEKDKYGRTALHYAAEYNSKETVEFLISHGIRSMKN 638



 Score = 70.1 bits (170), Expect = 2e-09
 Identities = 46/143 (32%), Positives = 69/143 (48%)
 Frame = +3

Query: 288 RTALHWATVLGHEEALKVLLLNTTRRMIDAKDKHGRTCLHYACSAGNVQFASLMIKRGAS 467
           +T+LH A     +E  K+L+ +     I+ KDK+GRT LHYA    + + A L+I  G +
Sbjct: 313 QTSLHIAAEYNSKETAKLLISHGIN--INEKDKYGRTALHYAAEYNSKETAKLLISHGIN 370

Query: 468 AKSVDCRGRTPLHYAVQSMSPEVVDLLIENGADKNVGDCDGVASWDMALRLGCSHLFGAL 647
               D  GRT LHYA +  S E V++LI +G + N  D  G  +   A           L
Sbjct: 371 INEKDKYGRTALHYAAEYNSKETVEILISHGININEKDKYGRTALHYAAEYNSKETVEIL 430

Query: 648 KSHHAVRVENNEETEQSQAKKHH 716
            SH    +  NE+ +  +   H+
Sbjct: 431 ISH---GININEKDKYGRTALHY 450


>ref|XP_001579112.1| ankyrin repeat protein [Trichomonas vaginalis G3]
           gi|121913315|gb|EAY18126.1| ankyrin repeat protein,
           putative [Trichomonas vaginalis G3]
          Length = 367

 Score = 90.9 bits (224), Expect = 1e-15
 Identities = 59/193 (30%), Positives = 100/193 (51%), Gaps = 1/193 (0%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           LH A   +  + +  LI+ G  I   D  G+TALH+A     +E +++L+ +     I+ 
Sbjct: 176 LHYAAESDSKETVELLISHGANINEKDEDGKTALHYAAESDSKETVELLISHGAN--INE 233

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
           KD+ G+T LHYA  + + +   L+I  GA+    D  G+T LHYA +S S E V+ LI +
Sbjct: 234 KDEDGKTALHYAAESDSKETVELLISHGANINEKDEDGKTALHYAAESDSKETVEFLISH 293

Query: 558 GADKNVGDCDGVASWDMALRLGCSHLFGALKSHHAVRVENNEETEQSQAKKHH-IKNAEN 734
           GA+ N  D DG  ++  ++R     +   L SH A     NE+ E  +   H+ +++ + 
Sbjct: 294 GANINEKDEDGETAFRYSVRHHNKEMVELLISHGA---NINEKDEYGETVLHYSLRHNDK 350

Query: 735 DYLQAKKHHPIKN 773
           + ++    H + N
Sbjct: 351 EMIELLISHGVNN 363



 Score = 80.9 bits (198), Expect = 1e-12
 Identities = 53/148 (35%), Positives = 77/148 (52%), Gaps = 2/148 (1%)
 Frame = +3

Query: 285 GRTALHWATVLGHEEALKVLLLNTTRRMIDAKDKHGRTCLHYACSAGNVQFASLMIKRGA 464
           G TALH+A     +E +++L+ +     I+ KD+ G+T LHYA  + + +   L+I  GA
Sbjct: 172 GETALHYAAESDSKETVELLISHGAN--INEKDEDGKTALHYAAESDSKETVELLISHGA 229

Query: 465 SAKSVDCRGRTPLHYAVQSMSPEVVDLLIENGADKNVGDCDGVASWDMALRLGCSHLFGA 644
           +    D  G+T LHYA +S S E V+LLI +GA+ N  D DG  +   A           
Sbjct: 230 NINEKDEDGKTALHYAAESDSKETVELLISHGANINEKDEDGKTALHYAAESDSKETVEF 289

Query: 645 LKSHHAVRVENNE--ETEQSQAKKHHIK 722
           L SH A   E +E  ET    + +HH K
Sbjct: 290 LISHGANINEKDEDGETAFRYSVRHHNK 317



 Score = 69.3 bits (168), Expect = 3e-09
 Identities = 42/122 (34%), Positives = 61/122 (50%)
 Frame = +3

Query: 369 IDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLL 548
           I+ K K+G T LHYA  + + +   L+I  GA+    D  G+T LHYA +S S E V+LL
Sbjct: 165 INEKGKYGETALHYAAESDSKETVELLISHGANINEKDEDGKTALHYAAESDSKETVELL 224

Query: 549 IENGADKNVGDCDGVASWDMALRLGCSHLFGALKSHHAVRVENNEETEQSQAKKHHIKNA 728
           I +GA+ N  D DG  +   A           L SH A     NE+ E  +   H+   +
Sbjct: 225 ISHGANINEKDEDGKTALHYAAESDSKETVELLISHGA---NINEKDEDGKTALHYAAES 281

Query: 729 EN 734
           ++
Sbjct: 282 DS 283



 Score = 68.2 bits (165), Expect = 7e-09
 Identities = 39/126 (30%), Positives = 65/126 (51%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           LH A   +  + +  LI+ G  I   D  G+TALH+A     +E ++ L+ +     I+ 
Sbjct: 242 LHYAAESDSKETVELLISHGANINEKDEDGKTALHYAAESDSKETVEFLISHGAN--INE 299

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
           KD+ G T   Y+    N +   L+I  GA+    D  G T LHY+++    E+++LLI +
Sbjct: 300 KDEDGETAFRYSVRHHNKEMVELLISHGANINEKDEYGETVLHYSLRHNDKEMIELLISH 359

Query: 558 GADKNV 575
           G + N+
Sbjct: 360 GVNNNL 365


>ref|XP_001323756.1| ankyrin repeat protein [Trichomonas vaginalis G3]
           gi|121906627|gb|EAY11533.1| ankyrin repeat protein,
           putative [Trichomonas vaginalis G3]
          Length = 597

 Score = 90.9 bits (224), Expect = 1e-15
 Identities = 58/155 (37%), Positives = 77/155 (49%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           LH A R N  +    LI+ G  I + D  G T LHWA    ++E  + L+ N     I+A
Sbjct: 418 LHYAARNNSKETAEILISNGADINAKDIDGSTPLHWAATFNNKETAEFLISNGAD--INA 475

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
           KDK G T LH A +  N + A  +I  GA   + D  G TPLHYA +  + E+V++LI N
Sbjct: 476 KDKDGFTLLHDAATFNNKETAEFLISNGADINAKDKDGFTPLHYAARYNNKEMVEILISN 535

Query: 558 GADKNVGDCDGVASWDMALRLGCSHLFGALKSHHA 662
           GAD N    DG      A R     +   L S+ A
Sbjct: 536 GADINTKTKDGFTPLHYAARNNSKEMVEILISNGA 570



 Score = 89.0 bits (219), Expect = 4e-15
 Identities = 56/148 (37%), Positives = 75/148 (50%)
 Frame = +3

Query: 174 DMDNCAPGLHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLN 353
           D+D   P LH A   N  +    LI+ G  I + D  G T LH A    ++E  + L+ N
Sbjct: 444 DIDGSTP-LHWAATFNNKETAEFLISNGADINAKDKDGFTLLHDAATFNNKETAEFLISN 502

Query: 354 TTRRMIDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPE 533
                I+AKDK G T LHYA    N +   ++I  GA   +    G TPLHYA ++ S E
Sbjct: 503 GAD--INAKDKDGFTPLHYAARYNNKEMVEILISNGADINTKTKDGFTPLHYAARNNSKE 560

Query: 534 VVDLLIENGADKNVGDCDGVASWDMALR 617
           +V++LI NGAD N  D DG     +  R
Sbjct: 561 MVEILISNGADINAKDKDGCTPHQITTR 588



 Score = 87.0 bits (214), Expect = 1e-14
 Identities = 52/137 (37%), Positives = 73/137 (53%)
 Frame = +3

Query: 180 DNCAPGLHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTT 359
           + C P LH A + N  +    LI+ G  I + +  G   LH+A     +E  ++L+ N  
Sbjct: 314 EGCTP-LHYAAKNNNKETAEILISNGADINAKNEDGCIPLHYAARNNSKETAEILISNGA 372

Query: 360 RRMIDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVV 539
              I+AKDK G T LHYA +  N + A  +I  GA   + +  GR PLHYA ++ S E  
Sbjct: 373 D--INAKDKEGFTPLHYAATFNNKETAEFLISNGADINAKNEEGRIPLHYAARNNSKETA 430

Query: 540 DLLIENGADKNVGDCDG 590
           ++LI NGAD N  D DG
Sbjct: 431 EILISNGADINAKDIDG 447



 Score = 86.7 bits (213), Expect = 2e-14
 Identities = 52/137 (37%), Positives = 71/137 (51%)
 Frame = +3

Query: 180 DNCAPGLHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTT 359
           D C P LH A R N  +    LI+ G  I + D  G T LH+A    ++E  + L+ N  
Sbjct: 347 DGCIP-LHYAARNNSKETAEILISNGADINAKDKEGFTPLHYAATFNNKETAEFLISNGA 405

Query: 360 RRMIDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVV 539
              I+AK++ GR  LHYA    + + A ++I  GA   + D  G TPLH+A    + E  
Sbjct: 406 D--INAKNEEGRIPLHYAARNNSKETAEILISNGADINAKDIDGSTPLHWAATFNNKETA 463

Query: 540 DLLIENGADKNVGDCDG 590
           + LI NGAD N  D DG
Sbjct: 464 EFLISNGADINAKDKDG 480



 Score = 62.8 bits (151), Expect = 3e-07
 Identities = 41/135 (30%), Positives = 61/135 (45%)
 Frame = +3

Query: 369 IDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLL 548
           I+AK++ G T LHYA    N + A ++I  GA   + +  G  PLHYA ++ S E  ++L
Sbjct: 308 INAKNEEGCTPLHYAAKNNNKETAEILISNGADINAKNEDGCIPLHYAARNNSKETAEIL 367

Query: 549 IENGADKNVGDCDGVASWDMALRLGCSHLFGALKSHHAVRVENNEETEQSQAKKHHIKNA 728
           I NGAD N  D +G                      H     NN+ET +         NA
Sbjct: 368 ISNGADINAKDKEGFTPL------------------HYAATFNNKETAEFLISNGADINA 409

Query: 729 ENDYLQAKKHHPIKN 773
           +N+  +   H+  +N
Sbjct: 410 KNEEGRIPLHYAARN 424


>pdb|4HLL|A Chain A, Crystal Structure Of Artificial Ankyrin Repeat
           Protein_ank(gag)1d4
          Length = 173

 Score = 90.1 bits (222), Expect = 2e-15
 Identities = 52/152 (34%), Positives = 85/152 (55%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           L  A R  + D++R L+  G  + + D++G T LH A   GH E +++LL +     ++A
Sbjct: 21  LLEAARAGQDDEVRLLLEHGADVNARDSIGSTPLHLAAYYGHLEIVRLLLEHGAD--VNA 78

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
           +D  G T LHYA   G+++   L+++ GA   + D  G TPLH A +    E+V LL+++
Sbjct: 79  RDSTGTTPLHYAARLGHLEIVRLLLEHGADVNARDAMGWTPLHLAAKKGHLEIVRLLLKH 138

Query: 558 GADKNVGDCDGVASWDMALRLGCSHLFGALKS 653
           GAD N  D  G  ++D+++  G   L   L+S
Sbjct: 139 GADVNANDHFGKTAFDISIDNGNEDLAEILQS 170



 Score = 65.9 bits (159), Expect = 3e-08
 Identities = 42/127 (33%), Positives = 66/127 (51%)
 Frame = +3

Query: 282 LGRTALHWATVLGHEEALKVLLLNTTRRMIDAKDKHGRTCLHYACSAGNVQFASLMIKRG 461
           LG+  L  A   G ++ +++LL +     ++A+D  G T LH A   G+++   L+++ G
Sbjct: 17  LGKKLLEAARA-GQDDEVRLLLEHGAD--VNARDSIGSTPLHLAAYYGHLEIVRLLLEHG 73

Query: 462 ASAKSVDCRGRTPLHYAVQSMSPEVVDLLIENGADKNVGDCDGVASWDMALRLGCSHLFG 641
           A   + D  G TPLHYA +    E+V LL+E+GAD N  D  G     +A + G   +  
Sbjct: 74  ADVNARDSTGTTPLHYAARLGHLEIVRLLLEHGADVNARDAMGWTPLHLAAKKGHLEIVR 133

Query: 642 ALKSHHA 662
            L  H A
Sbjct: 134 LLLKHGA 140


>ref|XP_001309012.1| ankyrin repeat protein [Trichomonas vaginalis G3]
           gi|121890719|gb|EAX96082.1| ankyrin repeat protein,
           putative [Trichomonas vaginalis G3]
          Length = 571

 Score = 90.1 bits (222), Expect = 2e-15
 Identities = 56/156 (35%), Positives = 75/156 (48%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           L  A + N  +    LI+ G  + S D  G T LH A     +EA K+L+ N     I+A
Sbjct: 176 LFHAAKYNCKEITEFLISHGLDVNSKDNEGNTPLHIAATKNSKEAAKILIANGAN--INA 233

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
           KDKH    LH+A +  N++ A L+I   A     D  GRTPLHY+      E + LLI+N
Sbjct: 234 KDKHKMRPLHWAANCNNLEIADLLISYEAYLNKKDDLGRTPLHYSASKNCIETLKLLIDN 293

Query: 558 GADKNVGDCDGVASWDMALRLGCSHLFGALKSHHAV 665
           G D    D DG     +A +         L SHHA+
Sbjct: 294 GVDMEATDSDGRTPLFIAAQANSKEALEILLSHHAI 329



 Score = 77.8 bits (190), Expect = 9e-12
 Identities = 47/128 (36%), Positives = 64/128 (50%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           L+ A   N  D    LI  G  + + D  G+TALH+A      E   +L+ N     I+A
Sbjct: 408 LYFAAEGNSKDTAEILITNGLLVMTRDKYGKTALHYAAENNCIETADLLISNAGD--INA 465

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
            DK G T LH A      + A L+I   A   +++ + +TPLHYA  +   E V+LLI N
Sbjct: 466 NDKKGFTALHIAAQKNYKEIAFLLISHAADVNAIELKRKTPLHYAAMNNCIETVELLISN 525

Query: 558 GADKNVGD 581
           GAD N  D
Sbjct: 526 GADINAKD 533



 Score = 61.6 bits (148), Expect = 7e-07
 Identities = 39/126 (30%), Positives = 60/126 (47%)
 Frame = +3

Query: 285 GRTALHWATVLGHEEALKVLLLNTTRRMIDAKDKHGRTCLHYACSAGNVQFASLMIKRGA 464
           G T LH A +   +E  ++L+ N     I+A +K  +T L++A    +   A ++I  G 
Sbjct: 371 GDTPLHLAALFNSKETAELLISNKVD--INATNKDMQTALYFAAEGNSKDTAEILITNGL 428

Query: 465 SAKSVDCRGRTPLHYAVQSMSPEVVDLLIENGADKNVGDCDGVASWDMALRLGCSHLFGA 644
              + D  G+T LHYA ++   E  DLLI N  D N  D  G  +  +A +     +   
Sbjct: 429 LVMTRDKYGKTALHYAAENNCIETADLLISNAGDINANDKKGFTALHIAAQKNYKEIAFL 488

Query: 645 LKSHHA 662
           L SH A
Sbjct: 489 LISHAA 494



 Score = 60.5 bits (145), Expect = 1e-06
 Identities = 37/124 (29%), Positives = 64/124 (51%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           LH A   N ++    LI+    I + D  G TALH A    ++E   +L+ +     ++A
Sbjct: 441 LHYAAENNCIETADLLISNAGDINANDKKGFTALHIAAQKNYKEIAFLLISHAAD--VNA 498

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
            +   +T LHYA     ++   L+I  GA   + D + +TPL+YA++    E+ ++L+  
Sbjct: 499 IELKRKTPLHYAAMNNCIETVELLISNGADINAKDNKEKTPLYYALKKDRKEIAEILLSR 558

Query: 558 GADK 569
           GAD+
Sbjct: 559 GADQ 562


>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
           gi|453055700|pdb|4ATZ|E Chain E, Ad5 Knob In Complex
           With A Designed Ankyrin Repeat Protein
           gi|453055701|pdb|4ATZ|F Chain F, Ad5 Knob In Complex
           With A Designed Ankyrin Repeat Protein
          Length = 154

 Score = 89.7 bits (221), Expect = 2e-15
 Identities = 51/142 (35%), Positives = 82/142 (57%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           L  A R  + D++R L+A G    + D  GRT LH A  +GH E ++VLL N     ++A
Sbjct: 6   LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD--VNA 63

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
            D +G T LH A S G+++   +++K GA   + D  G TPL+ A      E+V++L+++
Sbjct: 64  VDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123

Query: 558 GADKNVGDCDGVASWDMALRLG 623
           GAD N  D  G  ++D+++ +G
Sbjct: 124 GADVNAQDKFGKTAFDISIDIG 145



 Score = 69.3 bits (168), Expect = 3e-09
 Identities = 40/127 (31%), Positives = 66/127 (51%)
 Frame = +3

Query: 282 LGRTALHWATVLGHEEALKVLLLNTTRRMIDAKDKHGRTCLHYACSAGNVQFASLMIKRG 461
           LG+  L  A   G ++ +++L+ N      +A D +GRT LH A + G+++   ++++ G
Sbjct: 2   LGKKLLEAARA-GQDDEVRILMANGADA--NAYDHYGRTPLHMAAAVGHLEIVEVLLRNG 58

Query: 462 ASAKSVDCRGRTPLHYAVQSMSPEVVDLLIENGADKNVGDCDGVASWDMALRLGCSHLFG 641
           A   +VD  G TPLH A      E+V++L++ GAD N  D  G+    +A   G   +  
Sbjct: 59  ADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVE 118

Query: 642 ALKSHHA 662
            L  H A
Sbjct: 119 VLLKHGA 125


>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
           Complex With A Selective Darpin gi|171848918|pdb|2V5Q|D
           Chain D, Crystal Structure Of Wild-type Plk-1 Kinase
           Domain In Complex With A Selective Darpin
          Length = 167

 Score = 89.7 bits (221), Expect = 2e-15
 Identities = 52/142 (36%), Positives = 79/142 (55%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           L  A R  + D++R LIA G  + + D  G T LH A V GH E ++VLL +     +DA
Sbjct: 18  LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD--VDA 75

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
            D +G T LH A   G+++   +++K GA   + D  G TPLH A      E+V++L++ 
Sbjct: 76  ADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY 135

Query: 558 GADKNVGDCDGVASWDMALRLG 623
           GAD N  D  G  ++D+++  G
Sbjct: 136 GADVNAQDKFGKTAFDISIDNG 157


>ref|XP_001320368.1| ankyrin repeat protein [Trichomonas vaginalis G3]
           gi|121903172|gb|EAY08145.1| ankyrin repeat protein,
           putative [Trichomonas vaginalis G3]
          Length = 571

 Score = 89.7 bits (221), Expect = 2e-15
 Identities = 52/142 (36%), Positives = 77/142 (54%)
 Frame = +3

Query: 189 APGLHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRM 368
           A  LH A + N  + +  LI+ G  I   D  G TALH+A     +E +++L+ +     
Sbjct: 411 ATALHYAAKYNSKETVELLISHGANINEKDEHGATALHYAAKYNSKETVELLISHGAN-- 468

Query: 369 IDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLL 548
           I+ KD+HG T LHYA    + + A L+I  GA     D  G T LHYA ++ S E+ +LL
Sbjct: 469 INEKDEHGATALHYAAENNSKETAELLISHGADINEKDEYGATALHYAAENNSKEITELL 528

Query: 549 IENGADKNVGDCDGVASWDMAL 614
           I +GA+ N  D  G ++ D A+
Sbjct: 529 ISHGANINEKDDTGRSALDYAI 550



 Score = 89.0 bits (219), Expect = 4e-15
 Identities = 61/191 (31%), Positives = 90/191 (47%)
 Frame = +3

Query: 189 APGLHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRM 368
           A  LH A   N  +    LI+ G  I   D  G TALH+A     +E +++L+ +     
Sbjct: 378 ATALHYAAENNSKETTELLISHGANINEKDEYGATALHYAAKYNSKETVELLISHGAN-- 435

Query: 369 IDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLL 548
           I+ KD+HG T LHYA    + +   L+I  GA+    D  G T LHYA ++ S E  +LL
Sbjct: 436 INEKDEHGATALHYAAKYNSKETVELLISHGANINEKDEHGATALHYAAENNSKETAELL 495

Query: 549 IENGADKNVGDCDGVASWDMALRLGCSHLFGALKSHHAVRVENNEETEQSQAKKHHIKNA 728
           I +GAD N  D  G  +   A       +   L SH A  +   ++T +S A  + I+N 
Sbjct: 496 ISHGADINEKDEYGATALHYAAENNSKEITELLISHGA-NINEKDDTGRS-ALDYAIEND 553

Query: 729 ENDYLQAKKHH 761
             +  +    H
Sbjct: 554 SKETAELLSLH 564



 Score = 86.7 bits (213), Expect = 2e-14
 Identities = 61/183 (33%), Positives = 87/183 (47%)
 Frame = +3

Query: 189 APGLHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRM 368
           A  LH A + N  + +  LI+ G  I   D  G TALH+A     +E  ++L+ +     
Sbjct: 345 ATALHYAAKYNSKETVELLISHGADINEKDEYGATALHYAAENNSKETTELLISHGAN-- 402

Query: 369 IDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLL 548
           I+ KD++G T LHYA    + +   L+I  GA+    D  G T LHYA +  S E V+LL
Sbjct: 403 INEKDEYGATALHYAAKYNSKETVELLISHGANINEKDEHGATALHYAAKYNSKETVELL 462

Query: 549 IENGADKNVGDCDGVASWDMALRLGCSHLFGALKSHHAVRVENNEETEQSQAKKHHIKNA 728
           I +GA+ N  D  G  +   A           L SH A   + NE+ E      H+   A
Sbjct: 463 ISHGANINEKDEHGATALHYAAENNSKETAELLISHGA---DINEKDEYGATALHYA--A 517

Query: 729 END 737
           EN+
Sbjct: 518 ENN 520



 Score = 86.3 bits (212), Expect = 2e-14
 Identities = 59/180 (32%), Positives = 86/180 (47%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           +H A   N  + +  LI+ G  I   D  G TALH+A     +E +++L+ +     I+ 
Sbjct: 315 IHHAAEYNSKEAIELLISHGANINEKDEYGATALHYAAKYNSKETVELLISHGAD--INE 372

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
           KD++G T LHYA    + +   L+I  GA+    D  G T LHYA +  S E V+LLI +
Sbjct: 373 KDEYGATALHYAAENNSKETTELLISHGANINEKDEYGATALHYAAKYNSKETVELLISH 432

Query: 558 GADKNVGDCDGVASWDMALRLGCSHLFGALKSHHAVRVENNEETEQSQAKKHHIKNAEND 737
           GA+ N  D  G  +   A +         L SH A     NE+ E      H+   AEN+
Sbjct: 433 GANINEKDEHGATALHYAAKYNSKETVELLISHGA---NINEKDEHGATALHYA--AENN 487


>ref|XP_001316432.1| ankyrin repeat protein [Trichomonas vaginalis G3]
           gi|121899138|gb|EAY04209.1| ankyrin repeat protein,
           putative [Trichomonas vaginalis G3]
          Length = 573

 Score = 89.7 bits (221), Expect = 2e-15
 Identities = 61/182 (33%), Positives = 91/182 (50%), Gaps = 2/182 (1%)
 Frame = +3

Query: 183 NCAPGLHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTR 362
           N    LH A + N  +    LI+ G  I   D  G+TALH+A +  ++E  + L+ +   
Sbjct: 344 NGKTALHYAAKTNSKETAEHLISHGANINEKDKNGKTALHYAAMANNKETAEHLISHGAN 403

Query: 363 RMIDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVD 542
             I+ KDK+G+  L+YA  A N + A L+I  GA+    D  G+  LHYAV + + +  +
Sbjct: 404 --INEKDKYGKATLYYAVMANNKKTAELLISHGANINEKDKYGKATLHYAVMANNKKTAE 461

Query: 543 LLIENGADKNVGDCDGVASWDMALRLGCSHLFGALKSHHAVRVENNE--ETEQSQAKKHH 716
           LLI +GA+ N  D  G  +  MA +  C      L SH A   E ++  ET    A K +
Sbjct: 462 LLISHGANINEKDKYGETALHMAAKDNCKKTAELLISHGANINEKDKYGETALHMAAKDN 521

Query: 717 IK 722
            K
Sbjct: 522 CK 523



 Score = 84.0 bits (206), Expect = 1e-13
 Identities = 54/168 (32%), Positives = 81/168 (48%)
 Frame = +3

Query: 183 NCAPGLHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTR 362
           N    LH A   N  +    LI+ G  I   D  G+  L++A +  +++  ++L+ +   
Sbjct: 377 NGKTALHYAAMANNKETAEHLISHGANINEKDKYGKATLYYAVMANNKKTAELLISHGAN 436

Query: 363 RMIDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVD 542
             I+ KDK+G+  LHYA  A N + A L+I  GA+    D  G T LH A +    +  +
Sbjct: 437 --INEKDKYGKATLHYAVMANNKKTAELLISHGANINEKDKYGETALHMAAKDNCKKTAE 494

Query: 543 LLIENGADKNVGDCDGVASWDMALRLGCSHLFGALKSHHAVRVENNEE 686
           LLI +GA+ N  D  G  +  MA +  C      L SH A   E NE+
Sbjct: 495 LLISHGANINEKDKYGETALHMAAKDNCKKTAELLISHGANINEKNED 542



 Score = 82.4 bits (202), Expect = 4e-13
 Identities = 59/177 (33%), Positives = 87/177 (49%), Gaps = 2/177 (1%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           LH A + N  +    LI+ G  I   D  G+TALH+A     +E  + L+ +     I+ 
Sbjct: 316 LHIAAKTNSKETAEHLISHGANINEKDKNGKTALHYAAKTNSKETAEHLISHGAN--INE 373

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
           KDK+G+T LHYA  A N + A  +I  GA+    D  G+  L+YAV + + +  +LLI +
Sbjct: 374 KDKNGKTALHYAAMANNKETAEHLISHGANINEKDKYGKATLYYAVMANNKKTAELLISH 433

Query: 558 GADKNVGDCDGVASWDMALRLGCSHLFGALKSHHAVRVENNE--ETEQSQAKKHHIK 722
           GA+ N  D  G A+   A+          L SH A   E ++  ET    A K + K
Sbjct: 434 GANINEKDKYGKATLHYAVMANNKKTAELLISHGANINEKDKYGETALHMAAKDNCK 490



 Score = 72.4 bits (176), Expect = 4e-10
 Identities = 48/155 (30%), Positives = 74/155 (47%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           L+ AV  N       LI+ G  I   D  G+  LH+A +  +++  ++L+ +     I+ 
Sbjct: 415 LYYAVMANNKKTAELLISHGANINEKDKYGKATLHYAVMANNKKTAELLISHGAN--INE 472

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
           KDK+G T LH A      + A L+I  GA+    D  G T LH A +    +  +LLI +
Sbjct: 473 KDKYGETALHMAAKDNCKKTAELLISHGANINEKDKYGETALHMAAKDNCKKTAELLISH 532

Query: 558 GADKNVGDCDGVASWDMALRLGCSHLFGALKSHHA 662
           GA+ N  + DG  +  +A+R         L SH A
Sbjct: 533 GANINEKNEDGDTALQIAVRRNSKETAKLLISHGA 567



 Score = 62.8 bits (151), Expect = 3e-07
 Identities = 44/126 (34%), Positives = 60/126 (47%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           LH AV  N       LI+ G  I   D  G TALH A     ++  ++L+ +     I+ 
Sbjct: 448 LHYAVMANNKKTAELLISHGANINEKDKYGETALHMAAKDNCKKTAELLISHGAN--INE 505

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
           KDK+G T LH A      + A L+I  GA+    +  G T L  AV+  S E   LLI +
Sbjct: 506 KDKYGETALHMAAKDNCKKTAELLISHGANINEKNEDGDTALQIAVRRNSKETAKLLISH 565

Query: 558 GADKNV 575
           GA  +V
Sbjct: 566 GAKNDV 571


>gb|AAO25692.1| ankyrin repeat protein E4_8, partial [synthetic construct]
          Length = 199

 Score = 89.4 bits (220), Expect = 3e-15
 Identities = 52/142 (36%), Positives = 79/142 (55%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           L  A R  + D++R L+A G  + + D  G T LH A  +GH E ++VLL N     ++A
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNARDRDGNTPLHLAADMGHLEIVEVLLKNGAD--VNA 75

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
            D  G T LH A   G+++   +++K GA   ++D  G TPLH A  +   E+V++L++N
Sbjct: 76  DDVTGFTPLHLAAVWGHLEIVEVLLKNGADVNAIDTIGYTPLHLAANNGHLEIVEVLLKN 135

Query: 558 GADKNVGDCDGVASWDMALRLG 623
           GAD N  D +GV    +A   G
Sbjct: 136 GADVNAHDTNGVTPLHLAAHEG 157



 Score = 85.1 bits (209), Expect = 6e-14
 Identities = 52/150 (34%), Positives = 80/150 (53%)
 Frame = +3

Query: 174 DMDNCAPGLHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLN 353
           D D   P LH A  +  L+ +  L+  G  + + D  G T LH A V GH E ++VLL N
Sbjct: 44  DRDGNTP-LHLAADMGHLEIVEVLLKNGADVNADDVTGFTPLHLAAVWGHLEIVEVLLKN 102

Query: 354 TTRRMIDAKDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPE 533
                ++A D  G T LH A + G+++   +++K GA   + D  G TPLH A      E
Sbjct: 103 GAD--VNAIDTIGYTPLHLAANNGHLEIVEVLLKNGADVNAHDTNGVTPLHLAAHEGHLE 160

Query: 534 VVDLLIENGADKNVGDCDGVASWDMALRLG 623
           +V++L++ GAD N  D  G  ++D+++  G
Sbjct: 161 IVEVLLKYGADVNAQDKFGKTAFDISIDNG 190


>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
           Plasticity Of The Interface gi|333361285|pdb|3NOC|E
           Chain E, Designed Ankyrin Repeat Protein (Darpin)
           Binders To Acrb: Plasticity Of The Interface
          Length = 169

 Score = 89.4 bits (220), Expect = 3e-15
 Identities = 52/142 (36%), Positives = 80/142 (56%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           L  A R  + D++R L+A G  + + D  G T LH A   GH E ++VLL N     ++A
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD--VNA 75

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLLIEN 557
           KD  G T LH A   G+++   +++K GA   + D  G TPLH A +    E+V++L++N
Sbjct: 76  KDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135

Query: 558 GADKNVGDCDGVASWDMALRLG 623
           GAD N  D  G  ++D+++  G
Sbjct: 136 GADVNAQDKFGKTAFDISIDNG 157



 Score = 66.2 bits (160), Expect = 3e-08
 Identities = 36/117 (30%), Positives = 62/117 (52%)
 Frame = +3

Query: 198 LHRAVRLNELDKMRKLIAGGYAIQSCDALGRTALHWATVLGHEEALKVLLLNTTRRMIDA 377
           LH A     L+ +  L+  G  + + D+LG T LH A   GH E ++VLL N     ++A
Sbjct: 51  LHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD--VNA 108

Query: 378 KDKHGRTCLHYACSAGNVQFASLMIKRGASAKSVDCRGRTPLHYAVQSMSPEVVDLL 548
            D HG T LH A   G+++   +++K GA   + D  G+T    ++ + + ++ ++L
Sbjct: 109 SDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165