BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00002497
         (2427 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...   708   0.0  
ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A...   700   0.0  
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su...   698   0.0  
ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II su...   698   0.0  
gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Moru...   698   0.0  
ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II su...   696   0.0  
gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus pe...   695   0.0  
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su...   694   0.0  
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su...   694   0.0  
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su...   694   0.0  
ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II su...   694   0.0  
gb|ESW29856.1| hypothetical protein PHAVU_002G104500g [Phaseolus...   694   0.0  
ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citr...   694   0.0  
gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japo...   694   0.0  
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...   693   0.0  
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   693   0.0  
ref|XP_003612256.1| DNA-directed RNA polymerase [Medicago trunca...   692   0.0  
ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II su...   692   0.0  
ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II su...   689   0.0  
ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II su...   689   0.0  

>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score =  708 bits (1828), Expect = 0.0
 Identities = 346/402 (86%), Positives = 379/402 (94%), Gaps = 1/402 (0%)
 Frame = +1

Query: 1    SLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYY 180
            SLSVYLKP+V KTKERAKNVQCALEYTTLRSVT+ATEVWYDPDPMSTIIEEDVDFVKSYY
Sbjct: 1134 SLSVYLKPDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYY 1193

Query: 181  EMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKL 360
            EMPDE+++P++ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNAEKL
Sbjct: 1194 EMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKL 1253

Query: 361  ILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFD 540
            ILRIRIMND+APKGE++D + EDD FLK+IESNMLT+M+LRGIPDINKVFIKS K+NKFD
Sbjct: 1254 ILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFD 1313

Query: 541  ENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELR 720
            E+EGF P  EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIEVIEVLGIEAVR++LLDELR
Sbjct: 1314 ESEGFKPEVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELR 1373

Query: 721  VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 900
            VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA
Sbjct: 1374 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1433

Query: 901  MFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSM 1080
            ++AE+D+LRGVTENIMLGQLAPIGTG C+LYL+D+MLQ AIELQLPSYMEG+DF M+PS 
Sbjct: 1434 VYAETDFLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSR 1493

Query: 1081 SPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1203
            SP+  +P HD MMSP+YL SPN+  SPI DAQFSPYVGGMAF
Sbjct: 1494 SPITGTPYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535


>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
            gi|548833823|gb|ERM96260.1| hypothetical protein
            AMTR_s00001p00152770 [Amborella trichopoda]
          Length = 1844

 Score =  700 bits (1807), Expect = 0.0
 Identities = 347/402 (86%), Positives = 380/402 (94%), Gaps = 1/402 (0%)
 Frame = +1

Query: 1    SLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYY 180
            SLSVYLK EV KTKE+AKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFV+SYY
Sbjct: 1137 SLSVYLKHEVNKTKEKAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVRSYY 1196

Query: 181  EMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKL 360
            EMPDE+++P++ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNAEKL
Sbjct: 1197 EMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKL 1256

Query: 361  ILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFD 540
            ILRIRIMND+APKGE++D + EDD FLK+IESNMLT+M+LRGIPDINKVFIKS KINKFD
Sbjct: 1257 ILRIRIMNDEAPKGELQDESSEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINKFD 1316

Query: 541  ENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELR 720
            ENEGF P  EWMLDTEGVN+LAVMC+E+VDA+RTTSNHLIEVI+VLGIEAVR+ALLDELR
Sbjct: 1317 ENEGFKPEIEWMLDTEGVNLLAVMCNEEVDATRTTSNHLIEVIQVLGIEAVRRALLDELR 1376

Query: 721  VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 900
            VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA
Sbjct: 1377 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1436

Query: 901  MFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSM 1080
            ++AE+D+LRGVTENIMLGQLAPIGTG C+LYL+D+MLQQAIELQLPSYMEG+DF M+PS 
Sbjct: 1437 VYAEADHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGMDFGMTPSR 1496

Query: 1081 SPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1203
            SP+  +P H+ MMSP YL SPNM SSPI DAQFSPYVGGMAF
Sbjct: 1497 SPMTGTPYHEGMMSP-YLLSPNMRSSPITDAQFSPYVGGMAF 1537


>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
            brachyantha]
          Length = 1855

 Score =  698 bits (1802), Expect = 0.0
 Identities = 337/402 (83%), Positives = 376/402 (93%), Gaps = 1/402 (0%)
 Frame = +1

Query: 1    SLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYY 180
            SLSVYLKPEV K KE AKNVQCALEYTTLRSVT ATE+WYDPDP+ TIIEEDV+FV+SYY
Sbjct: 1134 SLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYY 1193

Query: 181  EMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKL 360
            EMPDED+ PD+ISPWLLRIELNREMMVDKKLSMADIAEKINHEF DD++CIFNDDNA+KL
Sbjct: 1194 EMPDEDVDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKL 1253

Query: 361  ILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFD 540
            ILR+RI ND+APKGE++D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K+NKF+
Sbjct: 1254 ILRVRITNDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNKFE 1313

Query: 541  ENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELR 720
            +N+GF P  EWMLDTEGVN+LAVMCHEDVDA+RTTSNHLIEVIEVLGIEAVR+ALLDELR
Sbjct: 1314 DNDGFKPDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELR 1373

Query: 721  VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 900
            VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAA
Sbjct: 1374 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAA 1433

Query: 901  MFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSM 1080
            ++AESDYLRGVTENIMLGQLAPIGTG C+LYL+D+MLQQAIELQLPSY+EG+DF M+P+ 
Sbjct: 1434 VYAESDYLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPAR 1493

Query: 1081 SPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1203
            SP+  +P H+ MMSPSYL SPN+ +SPI DAQFSPYVGGMAF
Sbjct: 1494 SPISGTPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 1535


>ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
            [Glycine max] gi|571435633|ref|XP_006573537.1| PREDICTED:
            DNA-directed RNA polymerase II subunit 1-like isoform X2
            [Glycine max]
          Length = 1827

 Score =  698 bits (1802), Expect = 0.0
 Identities = 338/402 (84%), Positives = 379/402 (94%), Gaps = 1/402 (0%)
 Frame = +1

Query: 1    SLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYY 180
            SLSVYL+P+VGKTKERAK+VQCALEYTTLRSVT+ATEVWYDPDPMSTIIEEDVDFVKSYY
Sbjct: 1134 SLSVYLRPDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYY 1193

Query: 181  EMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKL 360
            EMPDE+++ ++ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNAEKL
Sbjct: 1194 EMPDEEVALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKL 1253

Query: 361  ILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFD 540
            ILRIRIMND+APKGE++D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK+ K+ KFD
Sbjct: 1254 ILRIRIMNDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFD 1313

Query: 541  ENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELR 720
            EN+GF P++EWMLDTEGVN+LAVMCHEDVD +RTTSNHLIEVIEVLGIEAVR+ALLDELR
Sbjct: 1314 ENQGFKPNEEWMLDTEGVNLLAVMCHEDVDVTRTTSNHLIEVIEVLGIEAVRRALLDELR 1373

Query: 721  VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 900
            VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA
Sbjct: 1374 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1433

Query: 901  MFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSM 1080
            ++AE+DYLRGVTENIMLGQLAPIGTG C+LYL+D+ML+ AIELQLPSYM+G+DF M+P+ 
Sbjct: 1434 VYAETDYLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPAR 1493

Query: 1081 SPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1203
            SP+  +P H+ +MSPSYL SPN+  SP  DAQFSPYVGGMAF
Sbjct: 1494 SPISGTPYHEGLMSPSYLLSPNLRLSPTTDAQFSPYVGGMAF 1535


>gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Morus notabilis]
          Length = 1866

 Score =  698 bits (1801), Expect = 0.0
 Identities = 341/402 (84%), Positives = 374/402 (93%), Gaps = 1/402 (0%)
 Frame = +1

Query: 1    SLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYY 180
            SLSV+LKPE  KTKERAK VQCALEYTTLRSVT+ATEVWYDPDPMSTII+EDVDFV+SYY
Sbjct: 1149 SLSVFLKPEASKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDVDFVRSYY 1208

Query: 181  EMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKL 360
            EMPDE+I+PD+ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNAEKL
Sbjct: 1209 EMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINVEFDDDLTCIFNDDNAEKL 1268

Query: 361  ILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFD 540
            ILRIRIMND+APKG++ D   EDD FLK+IESNMLT+MSLRGIPDINKVFIK  K+NKFD
Sbjct: 1269 ILRIRIMNDEAPKGDLTDEAAEDDVFLKKIESNMLTEMSLRGIPDINKVFIKHGKVNKFD 1328

Query: 541  ENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELR 720
            EN+GF P  EWMLDTEGVN+LAV+CHEDVDA RTTSNHLIEVIEVLGIEAVR++LLDELR
Sbjct: 1329 ENDGFKPENEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELR 1388

Query: 721  VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 900
            VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA
Sbjct: 1389 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1448

Query: 901  MFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSM 1080
            ++AE+DYLRGVTENIMLGQLAPIGTG C+LYL+D+ML+ AIELQLPSYM+G+DF M+PS 
Sbjct: 1449 VYAETDYLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSR 1508

Query: 1081 SPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1203
            SPV  +P H+ MMSP YL SPN+  SPI+DAQFSPYVGGMAF
Sbjct: 1509 SPVSGTPYHEGMMSPGYLLSPNLRLSPISDAQFSPYVGGMAF 1550


>ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Glycine
            max]
          Length = 1827

 Score =  696 bits (1795), Expect = 0.0
 Identities = 337/402 (83%), Positives = 379/402 (94%), Gaps = 1/402 (0%)
 Frame = +1

Query: 1    SLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYY 180
            SLSVYL+ +VGKTKERAK+VQCALEYTTLRSVT+ATEVWYDPDPMSTIIEED DFVKSYY
Sbjct: 1134 SLSVYLRSDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYY 1193

Query: 181  EMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKL 360
            EMPDE+++ ++ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNAEKL
Sbjct: 1194 EMPDEEVALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKL 1253

Query: 361  ILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFD 540
            ILRIRIMND+APKGE++D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK+ K+ KFD
Sbjct: 1254 ILRIRIMNDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFD 1313

Query: 541  ENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELR 720
            EN+GF P++EWMLDTEGVN+LAVMCHEDVDA+RTTSNHLIEVIEVLGIEAVR+ALLDELR
Sbjct: 1314 ENQGFKPNEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELR 1373

Query: 721  VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 900
            VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA
Sbjct: 1374 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1433

Query: 901  MFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSM 1080
            ++AE+DYLRGVTENIMLGQLAPIGTG C+LYL+D+ML+ AIELQLPSYM+G+DF M+P+ 
Sbjct: 1434 VYAETDYLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPAR 1493

Query: 1081 SPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1203
            SP+  +P H+ +MSPSYL SPN+  SP +DAQFSPYVGGMAF
Sbjct: 1494 SPISGTPYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535


>gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
          Length = 1844

 Score =  695 bits (1794), Expect = 0.0
 Identities = 339/402 (84%), Positives = 374/402 (93%), Gaps = 1/402 (0%)
 Frame = +1

Query: 1    SLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYY 180
            SLSVYLKPE  KTKERAKNVQCALEYTTLRSVT+ATEVWYDPDPMSTIIEEDVDFV SYY
Sbjct: 1134 SLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYY 1193

Query: 181  EMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKL 360
            EMPDE+++PD+ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNAEKL
Sbjct: 1194 EMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKL 1253

Query: 361  ILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFD 540
            ILRIRIMN +APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K+NKFD
Sbjct: 1254 ILRIRIMNAEAPKGELVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFD 1313

Query: 541  ENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELR 720
             NEGF   QEWMLDTEGVN+LAV+CH+DVDA RTTSNHLIE++E+LGIEAVR++LLDELR
Sbjct: 1314 PNEGFKAEQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDELR 1373

Query: 721  VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 900
            VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA
Sbjct: 1374 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1433

Query: 901  MFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSM 1080
            +FAE+DYLRGVTENIMLGQLAPIGTG C+LYL+D+ML+ AIELQLPSYM+G+DF M+PS 
Sbjct: 1434 VFAETDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSR 1493

Query: 1081 SPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1203
            SPV  +P H+ MMSP+YL SPN+  SPI+DAQFSPYVGGMAF
Sbjct: 1494 SPVSGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
            [Citrus sinensis]
          Length = 1963

 Score =  694 bits (1791), Expect = 0.0
 Identities = 340/402 (84%), Positives = 370/402 (92%), Gaps = 1/402 (0%)
 Frame = +1

Query: 1    SLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYY 180
            SLSV+LKP V  TKERAKNVQCALEYTTLRSVTEATEVWYDPDPM TIIEEDV+FVKSYY
Sbjct: 1134 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1193

Query: 181  EMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKL 360
            EMPDEDI+P++ISPWLLRIELNREMMVDKKLSMA +AEKIN EF DD+TCIFNDDNA+KL
Sbjct: 1194 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1253

Query: 361  ILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFD 540
            ILRIRIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K  K+D
Sbjct: 1254 ILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYD 1313

Query: 541  ENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELR 720
            +NEGF    EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIE+IEVLGIEAVR+ALLDELR
Sbjct: 1314 DNEGFKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELR 1373

Query: 721  VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 900
            VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA
Sbjct: 1374 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1433

Query: 901  MFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSM 1080
            +FAESDYLRGVTENIMLGQLAPIGTG CSLYL+D+ML+ AIELQLPSYMEG++F M+P+ 
Sbjct: 1434 VFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPAR 1493

Query: 1081 SPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1203
            SPV  +P HD MMSP YLFSPN+  SP+ DAQFSPYVGGMAF
Sbjct: 1494 SPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
            [Citrus sinensis]
          Length = 1853

 Score =  694 bits (1791), Expect = 0.0
 Identities = 340/402 (84%), Positives = 370/402 (92%), Gaps = 1/402 (0%)
 Frame = +1

Query: 1    SLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYY 180
            SLSV+LKP V  TKERAKNVQCALEYTTLRSVTEATEVWYDPDPM TIIEEDV+FVKSYY
Sbjct: 1134 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1193

Query: 181  EMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKL 360
            EMPDEDI+P++ISPWLLRIELNREMMVDKKLSMA +AEKIN EF DD+TCIFNDDNA+KL
Sbjct: 1194 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1253

Query: 361  ILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFD 540
            ILRIRIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K  K+D
Sbjct: 1254 ILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYD 1313

Query: 541  ENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELR 720
            +NEGF    EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIE+IEVLGIEAVR+ALLDELR
Sbjct: 1314 DNEGFKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELR 1373

Query: 721  VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 900
            VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA
Sbjct: 1374 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1433

Query: 901  MFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSM 1080
            +FAESDYLRGVTENIMLGQLAPIGTG CSLYL+D+ML+ AIELQLPSYMEG++F M+P+ 
Sbjct: 1434 VFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPAR 1493

Query: 1081 SPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1203
            SPV  +P HD MMSP YLFSPN+  SP+ DAQFSPYVGGMAF
Sbjct: 1494 SPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
            [Citrus sinensis]
          Length = 1790

 Score =  694 bits (1791), Expect = 0.0
 Identities = 340/402 (84%), Positives = 370/402 (92%), Gaps = 1/402 (0%)
 Frame = +1

Query: 1    SLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYY 180
            SLSV+LKP V  TKERAKNVQCALEYTTLRSVTEATEVWYDPDPM TIIEEDV+FVKSYY
Sbjct: 1134 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1193

Query: 181  EMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKL 360
            EMPDEDI+P++ISPWLLRIELNREMMVDKKLSMA +AEKIN EF DD+TCIFNDDNA+KL
Sbjct: 1194 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1253

Query: 361  ILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFD 540
            ILRIRIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K  K+D
Sbjct: 1254 ILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYD 1313

Query: 541  ENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELR 720
            +NEGF    EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIE+IEVLGIEAVR+ALLDELR
Sbjct: 1314 DNEGFKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELR 1373

Query: 721  VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 900
            VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA
Sbjct: 1374 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1433

Query: 901  MFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSM 1080
            +FAESDYLRGVTENIMLGQLAPIGTG CSLYL+D+ML+ AIELQLPSYMEG++F M+P+ 
Sbjct: 1434 VFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPAR 1493

Query: 1081 SPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1203
            SPV  +P HD MMSP YLFSPN+  SP+ DAQFSPYVGGMAF
Sbjct: 1494 SPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
            [Citrus sinensis] gi|568825318|ref|XP_006467028.1|
            PREDICTED: DNA-directed RNA polymerase II subunit 1-like
            isoform X2 [Citrus sinensis]
          Length = 1860

 Score =  694 bits (1791), Expect = 0.0
 Identities = 340/402 (84%), Positives = 370/402 (92%), Gaps = 1/402 (0%)
 Frame = +1

Query: 1    SLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYY 180
            SLSV+LKP V  TKERAKNVQCALEYTTLRSVTEATEVWYDPDPM TIIEEDV+FVKSYY
Sbjct: 1134 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1193

Query: 181  EMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKL 360
            EMPDEDI+P++ISPWLLRIELNREMMVDKKLSMA +AEKIN EF DD+TCIFNDDNA+KL
Sbjct: 1194 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1253

Query: 361  ILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFD 540
            ILRIRIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K  K+D
Sbjct: 1254 ILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYD 1313

Query: 541  ENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELR 720
            +NEGF    EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIE+IEVLGIEAVR+ALLDELR
Sbjct: 1314 DNEGFKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELR 1373

Query: 721  VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 900
            VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA
Sbjct: 1374 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1433

Query: 901  MFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSM 1080
            +FAESDYLRGVTENIMLGQLAPIGTG CSLYL+D+ML+ AIELQLPSYMEG++F M+P+ 
Sbjct: 1434 VFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPAR 1493

Query: 1081 SPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1203
            SPV  +P HD MMSP YLFSPN+  SP+ DAQFSPYVGGMAF
Sbjct: 1494 SPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>gb|ESW29856.1| hypothetical protein PHAVU_002G104500g [Phaseolus vulgaris]
          Length = 1834

 Score =  694 bits (1791), Expect = 0.0
 Identities = 336/402 (83%), Positives = 380/402 (94%), Gaps = 1/402 (0%)
 Frame = +1

Query: 1    SLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYY 180
            SLSVYL P+VGKTKERAK+VQCALEYTTLRSVT+ATEVWYDP+PMSTII+EDVDFVKSYY
Sbjct: 1134 SLSVYLNPDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPEPMSTIIDEDVDFVKSYY 1193

Query: 181  EMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKL 360
            EMPDE+++ ++ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNAEKL
Sbjct: 1194 EMPDEEVALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKL 1253

Query: 361  ILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFD 540
            ILRIRIMND+APKGE++D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK+ K+ KFD
Sbjct: 1254 ILRIRIMNDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFD 1313

Query: 541  ENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELR 720
            E+EGF P++EWMLDTEGVN+LAVMCHEDVDA+RTTSNHLIEVIEVLGIEAVR+ALLDELR
Sbjct: 1314 ESEGFKPNEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELR 1373

Query: 721  VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 900
            VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA
Sbjct: 1374 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1433

Query: 901  MFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSM 1080
            ++AE+D+LRGVTENIMLGQLAPIGTG C+LYL+D+ML+ AIELQLPSYM+G+DF M+P+ 
Sbjct: 1434 VYAETDHLRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPAR 1493

Query: 1081 SPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1203
            SP+  +P H+ +MSPSYL SPN+  SP +DAQFSPYVGGMAF
Sbjct: 1494 SPISGTPYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535


>ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citrus clementina]
            gi|557527347|gb|ESR38597.1| hypothetical protein
            CICLE_v10024686mg [Citrus clementina]
          Length = 1860

 Score =  694 bits (1791), Expect = 0.0
 Identities = 340/402 (84%), Positives = 370/402 (92%), Gaps = 1/402 (0%)
 Frame = +1

Query: 1    SLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYY 180
            SLSV+LKP V  TKERAKNVQCALEYTTLRSVTEATEVWYDPDPM TIIEEDV+FVKSYY
Sbjct: 1134 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1193

Query: 181  EMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKL 360
            EMPDEDI+P++ISPWLLRIELNREMMVDKKLSMA +AEKIN EF DD+TCIFNDDNA+KL
Sbjct: 1194 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1253

Query: 361  ILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFD 540
            ILRIRIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K  K+D
Sbjct: 1254 ILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYD 1313

Query: 541  ENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELR 720
            +NEGF    EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIE+IEVLGIEAVR+ALLDELR
Sbjct: 1314 DNEGFKSEDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELR 1373

Query: 721  VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 900
            VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA
Sbjct: 1374 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1433

Query: 901  MFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSM 1080
            +FAESDYLRGVTENIMLGQLAPIGTG CSLYL+D+ML+ AIELQLPSYMEG++F M+P+ 
Sbjct: 1434 VFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPAR 1493

Query: 1081 SPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1203
            SPV  +P HD MMSP YLFSPN+  SP+ DAQFSPYVGGMAF
Sbjct: 1494 SPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535


>gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japonica Group]
          Length = 1526

 Score =  694 bits (1791), Expect = 0.0
 Identities = 337/402 (83%), Positives = 374/402 (93%), Gaps = 1/402 (0%)
 Frame = +1

Query: 1    SLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYY 180
            SLSVYLKPEV K KE AKNVQCALEYTTLRSVT ATE+WYDPDP+ TIIEEDV+FV+SYY
Sbjct: 805  SLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYY 864

Query: 181  EMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKL 360
            EMPDEDI PD+ISPWLLRIELNREMMVDKKLSMADIAEKINHEF DD++CIFNDDNA+KL
Sbjct: 865  EMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKL 924

Query: 361  ILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFD 540
            ILR+RI ND+APKGE++D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K+NKF+
Sbjct: 925  ILRVRITNDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNKFE 984

Query: 541  ENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELR 720
            +N GF    EWMLDTEGVN+LAVMCHEDVDA+RTTSNHLIEVIEVLGIEAVR+ALLDELR
Sbjct: 985  DNVGFKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELR 1044

Query: 721  VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 900
            VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAA
Sbjct: 1045 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAA 1104

Query: 901  MFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSM 1080
            ++AESDYLRGVTENIMLGQLAPIGTG C+LYL+D+MLQQAIELQLPSY+EG+DF M+P+ 
Sbjct: 1105 VYAESDYLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPAR 1164

Query: 1081 SPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1203
            SP+  +P H+ MMSPSYL SPN+ +SPI DAQFSPYVGGMAF
Sbjct: 1165 SPISGTPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 1206


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score =  693 bits (1789), Expect = 0.0
 Identities = 339/402 (84%), Positives = 375/402 (93%), Gaps = 1/402 (0%)
 Frame = +1

Query: 1    SLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYY 180
            SLSVYLKPE  KTKERAK VQCALEYTTLRSVT+ATEVWYDPDPMSTIIEED+DFVKSYY
Sbjct: 1134 SLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYY 1193

Query: 181  EMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKL 360
            EMPDE+I+P++ISPWLLRIELNREMMVDKKLSMA+IAEKIN EF DD+TCIFNDDNAEKL
Sbjct: 1194 EMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKL 1253

Query: 361  ILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFD 540
            ILRIRIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K+NKFD
Sbjct: 1254 ILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFD 1313

Query: 541  ENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELR 720
            ENEGF P  EWMLDTEGVN+LAVM HEDVDA RTTSNHLIEVIEVLGIEAVR++LLDELR
Sbjct: 1314 ENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELR 1373

Query: 721  VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 900
            VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA
Sbjct: 1374 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1433

Query: 901  MFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSM 1080
            ++AE+D+LRGVTENIMLGQLAPIGTG C+LYL+D+ML+ AIELQLPSY++G+DF M+PS 
Sbjct: 1434 VYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSR 1493

Query: 1081 SPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1203
            SP+  +P H+ MMSP+YL SPN+  SPI+DAQFSPYVGGMAF
Sbjct: 1494 SPISGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score =  693 bits (1789), Expect = 0.0
 Identities = 339/402 (84%), Positives = 375/402 (93%), Gaps = 1/402 (0%)
 Frame = +1

Query: 1    SLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYY 180
            SLSVYLKPE  KTKERAK VQCALEYTTLRSVT+ATEVWYDPDPMSTIIEED+DFVKSYY
Sbjct: 1134 SLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYY 1193

Query: 181  EMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKL 360
            EMPDE+I+P++ISPWLLRIELNREMMVDKKLSMA+IAEKIN EF DD+TCIFNDDNAEKL
Sbjct: 1194 EMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKL 1253

Query: 361  ILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFD 540
            ILRIRIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK  K+NKFD
Sbjct: 1254 ILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFD 1313

Query: 541  ENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELR 720
            ENEGF P  EWMLDTEGVN+LAVM HEDVDA RTTSNHLIEVIEVLGIEAVR++LLDELR
Sbjct: 1314 ENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELR 1373

Query: 721  VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 900
            VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA
Sbjct: 1374 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1433

Query: 901  MFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSM 1080
            ++AE+D+LRGVTENIMLGQLAPIGTG C+LYL+D+ML+ AIELQLPSY++G+DF M+PS 
Sbjct: 1434 VYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSR 1493

Query: 1081 SPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1203
            SP+  +P H+ MMSP+YL SPN+  SPI+DAQFSPYVGGMAF
Sbjct: 1494 SPISGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_003612256.1| DNA-directed RNA polymerase [Medicago truncatula]
            gi|355513591|gb|AES95214.1| DNA-directed RNA polymerase
            [Medicago truncatula]
          Length = 1864

 Score =  692 bits (1787), Expect = 0.0
 Identities = 338/402 (84%), Positives = 374/402 (93%), Gaps = 1/402 (0%)
 Frame = +1

Query: 1    SLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYY 180
            SLSVYLKPEV KTKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDVDFVKSYY
Sbjct: 1152 SLSVYLKPEVCKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDVDFVKSYY 1211

Query: 181  EMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKL 360
            EMPDE+++ D+ISPWLLRIELNREMMVDKKLSMADIAEKINHEF  D+TCIFNDDNAEKL
Sbjct: 1212 EMPDEEVALDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDGDLTCIFNDDNAEKL 1271

Query: 361  ILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFD 540
            ILRIRIMND+APKG+++D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK+ KI KFD
Sbjct: 1272 ILRIRIMNDEAPKGDIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKIQKFD 1331

Query: 541  ENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELR 720
            ENEGF P +EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIEVIEVLGIEAVR++LLDELR
Sbjct: 1332 ENEGFKPHEEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELR 1391

Query: 721  VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 900
            VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRN+TGPMMRCSFEETVDILLDAA
Sbjct: 1392 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNETGPMMRCSFEETVDILLDAA 1451

Query: 901  MFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSM 1080
            ++AE+D+LRGVTENIMLGQLAPIGTG C+L L+D+ML+ AIELQLPSYMEG+DF M+P  
Sbjct: 1452 VYAETDHLRGVTENIMLGQLAPIGTGECALLLNDEMLKNAIELQLPSYMEGLDFGMTPGR 1511

Query: 1081 SPV-LSPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1203
            SP+  +P H+ +MSP+YL SPN+  SP  DAQFSPYVGGMAF
Sbjct: 1512 SPISATPYHEGLMSPNYLLSPNLRLSPSNDAQFSPYVGGMAF 1553


>ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cicer
            arietinum]
          Length = 1834

 Score =  692 bits (1785), Expect = 0.0
 Identities = 340/402 (84%), Positives = 374/402 (93%), Gaps = 1/402 (0%)
 Frame = +1

Query: 1    SLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYY 180
            SLSVYLKPEV KTKERAK+VQCALEYTTLRSVT+ATEVWYDPDPMSTIIEEDVDFVKSYY
Sbjct: 1134 SLSVYLKPEVCKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYY 1193

Query: 181  EMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKL 360
            EMPDE+++ ++ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNAEKL
Sbjct: 1194 EMPDEEVALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKL 1253

Query: 361  ILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFD 540
            ILRIRIMND+APKGE++D + EDD FLK+IESNMLT+M+LRGI DINKVFIK+ KI KFD
Sbjct: 1254 ILRIRIMNDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIADINKVFIKNTKIQKFD 1313

Query: 541  ENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELR 720
            ENEGF P +EWMLDTEGVN+LAVMCHEDVDA RTTSNHLIEVIEVLGIEAVR++LLDELR
Sbjct: 1314 ENEGFKPYEEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELR 1373

Query: 721  VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 900
            VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA
Sbjct: 1374 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1433

Query: 901  MFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYMEGVDFAMSPSM 1080
            ++AE+DYLRGVTENIMLGQLAPIGTG C+L L+D+ML+ AIELQLPSYMEG+DF M+P  
Sbjct: 1434 VYAETDYLRGVTENIMLGQLAPIGTGECALLLNDEMLKNAIELQLPSYMEGLDFGMTPGR 1493

Query: 1081 SPV-LSPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1203
            SP+  +P H+ +MSPSYL SPN+  SP  DAQFSPYVGGMAF
Sbjct: 1494 SPISATPYHEGLMSPSYLLSPNLRLSPTNDAQFSPYVGGMAF 1535


>ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Solanum
            tuberosum]
          Length = 1839

 Score =  689 bits (1779), Expect = 0.0
 Identities = 343/403 (85%), Positives = 374/403 (92%), Gaps = 2/403 (0%)
 Frame = +1

Query: 1    SLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYY 180
            SLSVYLKPEVGKTKERAK VQCALEYTTLRSVT+ATEVWYDPDPMST+IEEDV+FVKSYY
Sbjct: 1134 SLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYY 1193

Query: 181  EMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKL 360
            EMPDE+I PD+ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNAEKL
Sbjct: 1194 EMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINVEFDDDLTCIFNDDNAEKL 1253

Query: 361  ILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFD 540
            ILRIRIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK+ K+ KFD
Sbjct: 1254 ILRIRIMNDEAPKGEL-DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFD 1312

Query: 541  ENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELR 720
            +NEGF    EWMLDTEGVN+LAVM HEDVDASRTTSNHLIEVIEVLGIEAVR++LLDELR
Sbjct: 1313 DNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELR 1372

Query: 721  VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 900
            VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA
Sbjct: 1373 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1432

Query: 901  MFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYME-GVDFAMSPS 1077
            +FAESD+LRGVTENIMLGQLAPIGTG CSLYL+++ML+QAIE+ LPSYME G++F M+P 
Sbjct: 1433 VFAESDHLRGVTENIMLGQLAPIGTGSCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPG 1492

Query: 1078 MSPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1203
             SP+  +P HD MMSP+YL SPNM  SPI DAQFSPYVGGMAF
Sbjct: 1493 RSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535


>ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Solanum
            lycopersicum]
          Length = 1846

 Score =  689 bits (1778), Expect = 0.0
 Identities = 343/403 (85%), Positives = 374/403 (92%), Gaps = 2/403 (0%)
 Frame = +1

Query: 1    SLSVYLKPEVGKTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVKSYY 180
            SLSVYLKPEVGKTKERAK VQCALEYTTLRSVT+ATEVWYDPDPMST+IEEDV+FVKSYY
Sbjct: 1134 SLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYY 1193

Query: 181  EMPDEDISPDRISPWLLRIELNREMMVDKKLSMADIAEKINHEFKDDITCIFNDDNAEKL 360
            EMPDE+I PD+ISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIFNDDNAEKL
Sbjct: 1194 EMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKL 1253

Query: 361  ILRIRIMNDDAPKGEMEDATVEDDAFLKQIESNMLTDMSLRGIPDINKVFIKSVKINKFD 540
            ILRIRIMND+APKGE+ D + EDD FLK+IESNMLT+M+LRGIPDINKVFIK+ K+ KFD
Sbjct: 1254 ILRIRIMNDEAPKGEL-DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFD 1312

Query: 541  ENEGFTPSQEWMLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELR 720
            +NEGF    EWMLDTEGVN+LAVM HEDVDASRTTSNHLIEVIEVLGIEAVR++LLDELR
Sbjct: 1313 DNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELR 1372

Query: 721  VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 900
            VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA
Sbjct: 1373 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1432

Query: 901  MFAESDYLRGVTENIMLGQLAPIGTGVCSLYLDDKMLQQAIELQLPSYME-GVDFAMSPS 1077
            +FAESD+LRGVTENIMLGQLAPIGTG CSLYL+++ML+QAIE+ LPSYME G++F M+P 
Sbjct: 1433 VFAESDHLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPG 1492

Query: 1078 MSPVL-SPNHDPMMSPSYLFSPNMHSSPIADAQFSPYVGGMAF 1203
             SP+  +P HD MMSP+YL SPNM  SPI DAQFSPYVGGMAF
Sbjct: 1493 RSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535