BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00002391
         (1343 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, pu...   199   3e-48
ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D sub...   199   3e-48
gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus pe...   194   5e-47
ref|NP_176490.2| DNA-directed RNA polymerase IV subunit 1 [Arabi...   191   8e-46
ref|XP_006391790.1| hypothetical protein EUTSA_v10023214mg [Eutr...   188   4e-45
ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D sub...   186   3e-44
ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D sub...   186   3e-44
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me...   185   3e-44
ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subsp. lyrata] gi...   185   3e-44
gb|ESW30448.1| hypothetical protein PHAVU_002G153700g [Phaseolus...   180   1e-42
gb|ESW30447.1| hypothetical protein PHAVU_002G153700g [Phaseolus...   180   1e-42
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   180   1e-42
ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV su...   179   2e-42
ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV su...   179   2e-42
ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV su...   179   2e-42
ref|XP_006300646.1| hypothetical protein CARUB_v10019657mg [Caps...   179   2e-42
ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV su...   179   3e-42
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su...   178   4e-42
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su...   178   4e-42
gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus no...   177   9e-42

>gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
            cacao]
          Length = 1484

 Score =  199 bits (505), Expect = 3e-48
 Identities = 137/435 (31%), Positives = 212/435 (48%), Gaps = 4/435 (0%)
 Frame = -3

Query: 1329 TSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGVRSV-VISGDEYSIAADKNSKNGE 1153
            T +++    S    L +  ++VIP LL   +KG   ++ V ++  D   ++    S  GE
Sbjct: 1080 TVTIVEYSKSSHMELDVIRDMVIPYLLEAVIKGFPEIKKVDILWKDRLKVSKPHKSSCGE 1139

Query: 1152 LVLLVEISSDISAQNSWKLLLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKLCLQR 973
            L L V +S D      W +L+  C  + D+IDW RS+P N   +  + GI+A  K  L  
Sbjct: 1140 LYLRVFVSGDFGITKLWGVLMNDCLQIMDMIDWTRSHPDNINQLCLAYGIDAGWKFFLNN 1199

Query: 972  LECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACLTNPK 793
            L+  +    K +   HL +V +CL  TG F  L +  L++      V +PFMQAC +NP 
Sbjct: 1200 LKSAISDTGKTILNEHLLVVANCLSATGEFVGLNSKGLRQQREHAYVSSPFMQACFSNPS 1259

Query: 792  KILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEILLNKEEMPSCSEPIVVDEILEI 613
               V+AAK G  D+L G++D+L WG  P +GT G F+I+ + ++    +EP+ V ++L  
Sbjct: 1260 ASFVKAAKTGASDDLQGTIDALAWGRIPHIGTGGQFDIIYSVKDQ-RLAEPVDVYKLLG- 1317

Query: 612  TAKMGCKDKPLQSNRNQKTAYDRSMRDSRRVMEKKAKYNSYVQNDKVSIPPKESNRSSNH 433
                        S  +QK   D      + +  K  KY S + +                
Sbjct: 1318 -----------SSISSQK--QDVEFEVPKALNFKSEKYGSLLID---------------- 1348

Query: 432  ILGDGWQMQSKNKDTKSLKSILHVSSKVENSEGKQEVLLRTLREILHSRYMVGQSLSETD 253
             LGD    + K  +TK  +SI      +++ +     L R LR ILH +Y +   LSE D
Sbjct: 1349 ALGDSASEELKKIETKR-RSIWRELLTLDDIQR----LSRALRNILH-KYPIDHRLSEAD 1402

Query: 252  KSLVENVLRHHPHYEEKVGNGLQGIKIGKNPDFPDTRCFMVERKDGSCVDFSYWKCL--- 82
             + +   L  HP  +EK+G+G Q IK+G +P+  + RCF + R DG+ VDFSY KC+   
Sbjct: 1403 WNTLMMALYFHPRRDEKIGSGAQEIKVGYHPEHANARCFSLVRTDGTIVDFSYHKCVLGA 1462

Query: 81   SRLNAPGRTNAMKEK 37
              + AP R  + K K
Sbjct: 1463 LEIIAPHRAKSYKSK 1477


>ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1438

 Score =  199 bits (505), Expect = 3e-48
 Identities = 132/417 (31%), Positives = 210/417 (50%), Gaps = 4/417 (0%)
 Frame = -3

Query: 1269 VVIPKLLRIHVKGVQGVRSVVISGDEYSIAADKNSKNGELVLLVEISSDISAQNS-WKLL 1093
            +VIP LL+  VKG   ++ V I      +  D+   +GEL L V +S       + W +L
Sbjct: 1067 LVIPFLLKTVVKGFLEIKKVDI------LWIDRPGSSGELCLRVSMSGKTRKGTTLWNML 1120

Query: 1092 LKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTLV 913
            +  C  V D+IDW+RS+P N + +  + GI+  +K  L +LE   K V K +  +HL LV
Sbjct: 1121 MDDCIPVMDMIDWSRSHPDNVHDICTAYGIDVGQKHFLNKLESATKDVGKTILPQHLLLV 1180

Query: 912  TDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSLD 733
             DCL  TG F  L    + + +    V APFMQAC + P   LV+AAK G+ DNL GSLD
Sbjct: 1181 ADCLSATGEFVSLNAKGIGQQLEHASVIAPFMQACFSTPGPCLVKAAKVGVVDNLQGSLD 1240

Query: 732  SLIWGNAPPLGTSGGFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKTA 553
            +L WGN P LG+ G F+I+ +K   P  S+PI V ++L          + + + +N    
Sbjct: 1241 ALTWGNTPSLGSGGQFDIIFSKG--PVSSKPIKVYDLL--------SSQIITNPQNGFEM 1290

Query: 552  YDRSMRDSRRVMEKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSLKS 373
             D  +  S + +      N Y+         ++    +  +L +   +Q  ++ +++LK+
Sbjct: 1291 SDAPIHLSDKFVAPNMYKNGYL---------RKWESITKSVLRENLTIQDIDRLSQALKN 1341

Query: 372  ILHVSSKVENSEGKQEVLLRTLREILHSRYMVGQSLSETDKSLVENVLRHHPHYEEKVGN 193
            IL                          +Y V + +++ DK ++  VLR HPH + K+G 
Sbjct: 1342 IL-------------------------QKYDVNERINDMDKQVLMMVLRFHPHGDRKIGL 1376

Query: 192  GLQGIKIGKNPDFPDTRCFMVERKDGSCVDFSYWKCLS---RLNAPGRTNAMKEKHM 31
            G++ +K+G +PD  + RCFM+ R DG+  D SY KC+     + AP R    + ++M
Sbjct: 1377 GIKEVKVGHHPDHENVRCFMLVRTDGTIEDVSYHKCICGAYDIIAPHRAKGYRVRYM 1433


>gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
          Length = 1356

 Score =  194 bits (494), Expect = 5e-47
 Identities = 134/437 (30%), Positives = 218/437 (49%), Gaps = 4/437 (0%)
 Frame = -3

Query: 1329 TSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGVRSVVISGDEYSIAADK-NSKNGE 1153
            T ++     +  E L +  ++VIP LL   VKG   V+ V I  +++   + K +  +GE
Sbjct: 962  TVTMPENSKNSSEQLDIARDLVIPFLLGTVVKGFLEVKKVDILWNDHPRESKKIHGSSGE 1021

Query: 1152 LVLLVEISSDISAQNSWKLLLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKLCLQR 973
            L L V +S     +  W +L+ +C  + D+IDW+RS+P N +    + GI+A  K  L  
Sbjct: 1022 LYLRVSMSGKTGRRRLWSMLMDNCLQIMDLIDWSRSHPDNVHDYCIAYGIDAGWKYFLNN 1081

Query: 972  LECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACLTNPK 793
            LE     + K +  +HL LV DCL  TG F  L    + +      V +PF+QAC ++P 
Sbjct: 1082 LETAANDIGKDILPQHLILVADCLSATGEFVGLNAKGIAQQKGHTSVSSPFVQACFSSPG 1141

Query: 792  KILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEILLNKEEMPSCSEPIVVDEILEI 613
               ++AAK G+ D L GS+++L WGN PP GT   F+IL +KE + + S+P+   ++L  
Sbjct: 1142 ACFIKAAKGGVVDELHGSVEALAWGNTPPSGTGRQFDILYSKEGL-NLSKPLNPYDLL-- 1198

Query: 612  TAKMGCKDKPLQSNRNQKTAYDRSMRDSRRVMEKKAKYNSYVQNDKVSIPPKESNRSSNH 433
                       Q + +++ A++ S          KA  N+  + D  SI  ++S      
Sbjct: 1199 ---------GSQISSSRENAFETS----------KAWNNTLDKCDVTSIGLEKSESVFKS 1239

Query: 432  ILGDGWQMQSKNKDTKSLKSILHVSSKVENSEGKQEVLLRTLREILHSRYMVGQSLSETD 253
            ++     +    K T++LK IL                          +Y + +SL+E D
Sbjct: 1240 VIRKYLTINDIQKWTQTLKRILR-------------------------KYDINESLTEGD 1274

Query: 252  KSLVENVLRHHPHYEEKVGNGLQGIKIGKNPDFPDTRCFMVERKDGSCVDFSYWKCL--- 82
            KS+++  L  HPH  +K+G+G+Q IK+G++P   + RCFM+ R D +  DFSY KC+   
Sbjct: 1275 KSILKMALHFHPHKVDKMGSGVQDIKVGQHPKHENARCFMLVRIDRTEEDFSYHKCVLGA 1334

Query: 81   SRLNAPGRTNAMKEKHM 31
              + AP R  + + K M
Sbjct: 1335 LEIVAPERAKSYRSKWM 1351


>ref|NP_176490.2| DNA-directed RNA polymerase IV subunit 1 [Arabidopsis thaliana]
            gi|334183598|ref|NP_001185298.1| DNA-directed RNA
            polymerase IV subunit 1 [Arabidopsis thaliana]
            gi|75335311|sp|Q9LQ02.1|NRPD1_ARATH RecName:
            Full=DNA-directed RNA polymerase IV subunit 1; AltName:
            Full=DNA-directed RNA polymerase D subunit 1;
            Short=AtNRPD1a; Short=Nuclear RNA polymerase D 1a;
            AltName: Full=Protein RNA-DIRECTED DNA METHYLATION
            DEFECTIVE 3; AltName: Full=Protein SILENCING DEFECTIVE 4;
            AltName: Full=Protein SILENCING MOVEMENT DEFICIENT 2;
            AltName: Full=RNA polymerase IV subunit 1a; Short=POL IV
            1a gi|8493592|gb|AAF75815.1|AC011000_18 Contains
            similarity to DNA-directed RNA Polymerase alpha-subunit
            from Methanococcus jannaschii gi|3915860 and contains
            Ribosomal protein L36 PF|00444 and RNA-Polymerase
            alpha-subunit PF|00623 domains. EST gb|AA597311 comes
            from this gene [Arabidopsis thaliana]
            gi|12323252|gb|AAG51604.1|AC010795_8 RNA polymerase IIA
            largest subunit, putative; 12353-6556 [Arabidopsis
            thaliana] gi|59939208|gb|AAX12372.1| DNA-directed RNA
            polymerase beta subunit [Arabidopsis thaliana]
            gi|68300852|gb|AAY89363.1| RNA polymerase IV largest
            subunit [Arabidopsis thaliana]
            gi|332195920|gb|AEE34041.1| nuclear RNA polymerase D1A
            [Arabidopsis thaliana] gi|332195921|gb|AEE34042.1|
            nuclear RNA polymerase D1A [Arabidopsis thaliana]
          Length = 1453

 Score =  191 bits (484), Expect = 8e-46
 Identities = 141/442 (31%), Positives = 217/442 (49%), Gaps = 6/442 (1%)
 Frame = -3

Query: 1338 VAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGVRSVVISGDEYSIAADKNSKN 1159
            V  T +V+      V  L     V+IP LL   VKG QG++ V I   +   A  +N  +
Sbjct: 1043 VCITVTVVEASKHSVLELDAIRLVLIPFLLDSPVKGDQGIKKVNILWTDRPKAPKRNGNH 1102

Query: 1158 --GELVLLVEISSDISAQNSWKLLLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKL 985
              GEL L V +  D   +N W  LL+ C  + D+IDW RS+P N        GI+A + +
Sbjct: 1103 LAGELYLKVTMYGDRGKRNCWTALLETCLPIMDMIDWGRSHPDNIRQCCSVYGIDAGRSI 1162

Query: 984  CLQRLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACL 805
             +  LE  V    K + R HL LV D L +TG F  L      K        APF QAC 
Sbjct: 1163 FVANLESAVSDTGKEILREHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACF 1222

Query: 804  TNPKKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEILLNKEEMPSCSEPIVVDE 625
            ++P +  ++AAK+G++D+L GS+D+L WG  P  GT   FEI+++  ++   + P+ V +
Sbjct: 1223 SSPSQCFLKAAKEGVRDDLQGSIDALAWGKVPGFGTGDQFEIIIS-PKVHGFTTPVDVYD 1281

Query: 624  ILEITAKMGCKDKPLQSNRNQKTAYDRSMRDSRRVMEKKAKYNSYVQNDKVSIPPKESNR 445
            +L  T  M                                + NS  ++DK ++ P     
Sbjct: 1282 LLSSTKTM-------------------------------RRTNSAPKSDKATVQP----- 1305

Query: 444  SSNHILGDGWQMQSKNKDTKSL-KSILHVSSKVENSEGKQEVLLRTLREILHSRYMVGQS 268
                +L   +    K  D K +  S+L      +N     E+L ++L+ ILHS Y + + 
Sbjct: 1306 --FGLLHSAFLKDIKVLDGKGIPMSLLRTIFTWKNI----ELLSQSLKRILHS-YEINEL 1358

Query: 267  LSETDKSLVENVLRHHPHYEEKVGNGLQGIKIGKNPDFPDTRCFMVERKDGSCVDFSYWK 88
            L+E D+ LV+ VL+ HP+  EK+G G++GI++ K+    D+ CF V R DG+  DFSY K
Sbjct: 1359 LNERDEGLVKMVLQLHPNSVEKIGPGVKGIRVAKS-KHGDSCCFEVVRIDGTFEDFSYHK 1417

Query: 87   CL---SRLNAPGRTNAMKEKHM 31
            C+   +++ AP + N  K K++
Sbjct: 1418 CVLGATKIIAPKKMNFYKSKYL 1439


>ref|XP_006391790.1| hypothetical protein EUTSA_v10023214mg [Eutrema salsugineum]
            gi|557088296|gb|ESQ29076.1| hypothetical protein
            EUTSA_v10023214mg [Eutrema salsugineum]
          Length = 1465

 Score =  188 bits (478), Expect = 4e-45
 Identities = 143/433 (33%), Positives = 213/433 (49%), Gaps = 10/433 (2%)
 Frame = -3

Query: 1299 EVEVLKLFSEVVIPKLLRIHVKGVQGVRSVVISGDEYSIAADKN--SKNGELVLLVEISS 1126
            E++ ++L   V+IP LL   VKG + ++ V I   +   A  +N  S  GEL L V +  
Sbjct: 1067 ELDAIRL---VLIPFLLDSPVKGYREIKRVDILWADRPKAPKRNVNSLPGELFLKVTMYG 1123

Query: 1125 DISAQNSWKLLLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVE 946
            D   +N W  LL+ C  V D+IDW RS+P N        GI+A + + L  LE  V    
Sbjct: 1124 DGGKKNFWSALLETCLPVMDVIDWTRSHPDNIRQCCSVYGIDAGRSIFLANLESAVSDTG 1183

Query: 945  KPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKK 766
            K + R HL LV DCL +TG F  L +    K        APF QAC ++P +  ++AAK+
Sbjct: 1184 KTILREHLLLVADCLSVTGEFVALNSKGWGKQRQVESTPAPFTQACFSSPSQCFLKAAKE 1243

Query: 765  GMQDNLLGSLDSLIWGNAPPLGTSGGFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDK 586
            G++D L GS+D+L WG  P  GT   FEI+++ +     S P+ V + L  TA +     
Sbjct: 1244 GVRDELQGSIDALAWGKVPCFGTGDQFEIIISPKN-HGFSTPVDVFDFLSSTATL----- 1297

Query: 585  PLQSNRNQKTAYDRSMRDSRRVMEKKAKYNSYVQNDKVSIPP-----KESNRSSNHILGD 421
                    KT   R+              NS  ++DKV++ P        +++ N + G 
Sbjct: 1298 -------PKTGKVRAT-------------NSMPKSDKVTVQPFPLLDNAISKAINTLDGK 1337

Query: 420  GWQMQSKNKDTKSLKSILHVSSKVENSEGKQEVLLRTLREILHSRYMVGQSLSETDKSLV 241
            G  M         L++IL        +    E L R+L+ IL++ Y +   L+E D+  +
Sbjct: 1338 GLAM-------SQLRNIL--------TWDGIEKLSRSLKRILYN-YEIDAPLNEKDERHL 1381

Query: 240  ENVLRHHPHYEEKVGNGLQGIKIGKNPDFPDTRCFMVERKDGSCVDFSYWKCL---SRLN 70
               L  HP+ +EK+G G QGIK+  N    + RCF V R DG+  DFSY KC+   + + 
Sbjct: 1382 MMALLFHPNRDEKIGPGFQGIKVA-NSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEII 1440

Query: 69   APGRTNAMKEKHM 31
            AP + N  K K++
Sbjct: 1441 APTKVNFYKSKYL 1453


>ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
            [Cicer arietinum]
          Length = 1474

 Score =  186 bits (471), Expect = 3e-44
 Identities = 122/403 (30%), Positives = 196/403 (48%), Gaps = 1/403 (0%)
 Frame = -3

Query: 1287 LKLFSEVVIPKLLRIHVKGVQGVRSVVISGDEYSIAADK-NSKNGELVLLVEISSDISAQ 1111
            L +   ++IP LLR  +KG+  ++ V I   + S  +   N  +GEL L V +SSD    
Sbjct: 1081 LDVVRNMMIPFLLRTAIKGIFEIKKVDILWKDLSKGSKSYNGSSGELYLRVTMSSDSDRG 1140

Query: 1110 NSWKLLLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHR 931
              W  L+ HC  +  +IDW RS+P N +    + GI+A  +  L  L          +  
Sbjct: 1141 TFWGALINHCHRIMPMIDWARSHPDNIHHFCSAFGIDAGWQHFLHNLSSATSDTGTSILP 1200

Query: 930  RHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDN 751
            +HL LV + L  +G F  L +  + +      V +PF+QAC +NP    ++AAK G+ DN
Sbjct: 1201 KHLRLVANSLSASGEFVGLNSKGMARQRNHASVSSPFVQACFSNPGSTFLKAAKSGVVDN 1260

Query: 750  LLGSLDSLIWGNAPPLGTSGGFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSN 571
            L G+LD L WGN   +GTSG F+++ + E++   ++ + V ++LE +      D+ + ++
Sbjct: 1261 LQGTLDGLAWGNCLSMGTSGQFDVMYS-EKVQELAKSVDVYDLLETSFDQ--LDQEINTS 1317

Query: 570  RNQKTAYDRSMRDSRRVMEKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKD 391
            ++   + D              K NS  ++ K    PKE                   K 
Sbjct: 1318 QSNNYSSD--------------KCNSQFRHKKGRYAPKEP------------------KQ 1345

Query: 390  TKSLKSILHVSSKVENSEGKQEVLLRTLREILHSRYMVGQSLSETDKSLVENVLRHHPHY 211
             KS+      ++ ++         L +    + ++Y + Q LSE DK  +  VL  HP  
Sbjct: 1346 WKSVIRNFMTANDIQK--------LTSASRFILNKYPIDQILSERDKLTIMKVLHFHPRR 1397

Query: 210  EEKVGNGLQGIKIGKNPDFPDTRCFMVERKDGSCVDFSYWKCL 82
             EK+G+G Q IK+G +P F D+RCF + R DG+  DFSY KC+
Sbjct: 1398 NEKLGSGPQHIKVGWHPKFTDSRCFFIIRTDGTVEDFSYRKCI 1440


>ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
            [Cicer arietinum] gi|502160026|ref|XP_004511608.1|
            PREDICTED: DNA-directed RNA polymerase D subunit 1-like
            isoform X2 [Cicer arietinum]
            gi|502160029|ref|XP_004511609.1| PREDICTED: DNA-directed
            RNA polymerase D subunit 1-like isoform X3 [Cicer
            arietinum] gi|502160032|ref|XP_004511610.1| PREDICTED:
            DNA-directed RNA polymerase D subunit 1-like isoform X4
            [Cicer arietinum]
          Length = 1475

 Score =  186 bits (471), Expect = 3e-44
 Identities = 122/403 (30%), Positives = 196/403 (48%), Gaps = 1/403 (0%)
 Frame = -3

Query: 1287 LKLFSEVVIPKLLRIHVKGVQGVRSVVISGDEYSIAADK-NSKNGELVLLVEISSDISAQ 1111
            L +   ++IP LLR  +KG+  ++ V I   + S  +   N  +GEL L V +SSD    
Sbjct: 1082 LDVVRNMMIPFLLRTAIKGIFEIKKVDILWKDLSKGSKSYNGSSGELYLRVTMSSDSDRG 1141

Query: 1110 NSWKLLLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHR 931
              W  L+ HC  +  +IDW RS+P N +    + GI+A  +  L  L          +  
Sbjct: 1142 TFWGALINHCHRIMPMIDWARSHPDNIHHFCSAFGIDAGWQHFLHNLSSATSDTGTSILP 1201

Query: 930  RHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDN 751
            +HL LV + L  +G F  L +  + +      V +PF+QAC +NP    ++AAK G+ DN
Sbjct: 1202 KHLRLVANSLSASGEFVGLNSKGMARQRNHASVSSPFVQACFSNPGSTFLKAAKSGVVDN 1261

Query: 750  LLGSLDSLIWGNAPPLGTSGGFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSN 571
            L G+LD L WGN   +GTSG F+++ + E++   ++ + V ++LE +      D+ + ++
Sbjct: 1262 LQGTLDGLAWGNCLSMGTSGQFDVMYS-EKVQELAKSVDVYDLLETSFDQ--LDQEINTS 1318

Query: 570  RNQKTAYDRSMRDSRRVMEKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKD 391
            ++   + D              K NS  ++ K    PKE                   K 
Sbjct: 1319 QSNNYSSD--------------KCNSQFRHKKGRYAPKEP------------------KQ 1346

Query: 390  TKSLKSILHVSSKVENSEGKQEVLLRTLREILHSRYMVGQSLSETDKSLVENVLRHHPHY 211
             KS+      ++ ++         L +    + ++Y + Q LSE DK  +  VL  HP  
Sbjct: 1347 WKSVIRNFMTANDIQK--------LTSASRFILNKYPIDQILSERDKLTIMKVLHFHPRR 1398

Query: 210  EEKVGNGLQGIKIGKNPDFPDTRCFMVERKDGSCVDFSYWKCL 82
             EK+G+G Q IK+G +P F D+RCF + R DG+  DFSY KC+
Sbjct: 1399 NEKLGSGPQHIKVGWHPKFTDSRCFFIIRTDGTVEDFSYRKCI 1441


>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1687

 Score =  185 bits (470), Expect = 3e-44
 Identities = 126/417 (30%), Positives = 201/417 (48%), Gaps = 1/417 (0%)
 Frame = -3

Query: 1329 TSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGVRSV-VISGDEYSIAADKNSKNGE 1153
            T +V+    + V+ L    + +IP LL+  +KG   ++ V ++  D   +    N   GE
Sbjct: 1241 TVAVVEDSKNSVQ-LDSVRKSLIPFLLQTAIKGFLEIKKVDILWKDLPKVTKSYNGSAGE 1299

Query: 1152 LVLLVEISSDISAQNSWKLLLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKLCLQR 973
            L L V +SS       W  L+ HC  +  +IDW RS+P N +    + GI+A  +     
Sbjct: 1300 LYLRVTMSSGNDNGTFWGRLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYFHN 1359

Query: 972  LECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACLTNPK 793
            L        K +  +HL LV + L  +G F  L    + +      V +PF+QAC +NP 
Sbjct: 1360 LSSATSDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPG 1419

Query: 792  KILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEILLNKEEMPSCSEPIVVDEILEI 613
               ++AAK G+ DNL G+LD+L WGN  P+GT G F+I+ + E++   ++ + V  +LE 
Sbjct: 1420 SSFLKAAKSGIVDNLQGNLDALAWGNCLPMGTGGQFDIIYS-EKVEEINKSVDVYGLLET 1478

Query: 612  TAKMGCKDKPLQSNRNQKTAYDRSMRDSRRVMEKKAKYNSYVQNDKVSIPPKESNRSSNH 433
            +      D+ +   +++K +  +   D R      +K   Y         PKE       
Sbjct: 1479 SFNQ--MDQEINIPQSRKYSSGKCSSDFR------SKNGGYT--------PKEP------ 1516

Query: 432  ILGDGWQMQSKNKDTKSLKSILHVSSKVENSEGKQEVLLRTLREILHSRYMVGQSLSETD 253
                        K  KS+      ++ ++       V+L        ++Y + ++LSETD
Sbjct: 1517 ------------KQWKSVLRNFMTANDIQRLTFDARVIL--------NKYQIDETLSETD 1556

Query: 252  KSLVENVLRHHPHYEEKVGNGLQGIKIGKNPDFPDTRCFMVERKDGSCVDFSYWKCL 82
            K  +  VL  HP  +EK G+G Q IK+G +P+F D+RCF + RKDGS  DFSY KC+
Sbjct: 1557 KLTIMKVLHFHPRRDEKFGSGPQNIKVGWHPEFTDSRCFFIIRKDGSVEDFSYRKCI 1613


>ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subsp. lyrata] gi|297332282|gb|EFH62700.1|
            NRPD1a [Arabidopsis lyrata subsp. lyrata]
          Length = 1456

 Score =  185 bits (470), Expect = 3e-44
 Identities = 140/439 (31%), Positives = 212/439 (48%), Gaps = 6/439 (1%)
 Frame = -3

Query: 1329 TSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGVRSVVISGDEYSIAADKNSKN--G 1156
            T +V+      V  L     V+IP LL   VKG Q ++ V I   +   A  +N  +  G
Sbjct: 1047 TVTVIEASKHSVLELDAIRLVLIPFLLDSPVKGSQEIKKVDILWTDRPKAPKRNGDHLAG 1106

Query: 1155 ELVLLVEISSDISAQNSWKLLLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKLCLQ 976
            EL L V +  D   +N W  LL+ C  + D+IDW+RS+P N        GI+A + + + 
Sbjct: 1107 ELYLRVTMYGDRGKRNCWTALLETCLPIMDMIDWSRSHPDNIRQCCSVYGIDAGRSIFVA 1166

Query: 975  RLECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACLTNP 796
             LE  V    K + + HL LV D L +TG F  L      K        APF QAC ++P
Sbjct: 1167 NLESAVSDTGKTILKEHLLLVADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSP 1226

Query: 795  KKILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEILLNKEEMPSCSEPIVVDEILE 616
             +  ++AAK+G++D+L GS+D+L WG  P  GT   FEI+++  ++   + P+ V ++L 
Sbjct: 1227 SQCFLKAAKEGVRDDLQGSIDALAWGKVPGFGTGDQFEIIIS-PKVHGFTTPVNVYDLLS 1285

Query: 615  ITAKMGCKDKPLQSNRNQKTAYDRSMRDSRRVMEKKAKYNSYVQNDKVSIPPKESNRSSN 436
             T                                   K NS  ++DKV++ P +      
Sbjct: 1286 ST---------------------------------PPKTNSAPKSDKVTVQPFD------ 1306

Query: 435  HILGDGWQMQSKNKDTKSLK-SILHVSSKVENSEGKQEVLLRTLREILHSRYMVGQSLSE 259
             +LG  +    K  D K +  S L      EN     E L ++L+ IL S Y +   L+ 
Sbjct: 1307 -LLGTAFLKGIKVLDGKGISMSRLRTIFTWENI----EKLSQSLKRILTS-YEINDPLNG 1360

Query: 258  TDKSLVENVLRHHPHYEEKVGNGLQGIKIGKNPDFPDTRCFMVERKDGSCVDFSYWKCL- 82
             D+ LV  VL  HP+  +K+G GL+GI++ K+    D+RCF V R DG+  DFSY KC+ 
Sbjct: 1361 RDEELVMMVLHLHPNSADKIGPGLKGIRVAKS-KHGDSRCFEVVRIDGTFEDFSYHKCVL 1419

Query: 81   --SRLNAPGRTNAMKEKHM 31
              +++ AP + N  K K++
Sbjct: 1420 GATKIIAPKKVNLYKSKYL 1438


>gb|ESW30448.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
          Length = 1464

 Score =  180 bits (456), Expect = 1e-42
 Identities = 126/412 (30%), Positives = 196/412 (47%), Gaps = 2/412 (0%)
 Frame = -3

Query: 1305 NSEVEV-LKLFSEVVIPKLLRIHVKGVQGVRSVVISGDEYSIAADK-NSKNGELVLLVEI 1132
            NSE  + L    +++IP  L   +KG   ++ V I  +  S   +  N  +GEL L V +
Sbjct: 1065 NSENPIQLNSVRDLMIPFFLGTTIKGFMDIKKVDILWNNQSKGTNSYNGSSGELYLRVTV 1124

Query: 1131 SSDISAQNSWKLLLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKM 952
            +S  +    W +L+ HC  +  IIDW RS+P N   +S + GI+ A +   + L   +  
Sbjct: 1125 ASSGNTGRFWGVLVNHCHKIMQIIDWPRSHPDNINYLSSAYGIDVAWQYYYKSLASAISD 1184

Query: 951  VEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAA 772
              K +  +HL L+ + +  +G F  L    + +      V +PF+QAC +NP +  ++AA
Sbjct: 1185 TGKSILPKHLRLLANSMSASGEFVGLNAKGMAQQRQHASVSSPFVQACFSNPGRSFIKAA 1244

Query: 771  KKGMQDNLLGSLDSLIWGNAPPLGTSGGFEILLNKEEMPSCSEPIVVDEILEITAKMGCK 592
            K  + DNL GSLD+L WGN P +GTSG F+I+ + E+     + + V ++LE +      
Sbjct: 1245 KSELTDNLQGSLDALAWGNCPSMGTSGLFDIIYS-EKGHEVDKAVDVYKLLEASF----- 1298

Query: 591  DKPLQSNRNQKTAYDRSMRDSRRVMEKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQ 412
            DKP     N K  +      S +   +    N Y                          
Sbjct: 1299 DKP-----NNKIGFHAHNNSSGKCGSEFRHKNGYA------------------------- 1328

Query: 411  MQSKNKDTKSLKSILHVSSKVENSEGKQEVLLRTLREILHSRYMVGQSLSETDKSLVENV 232
                 K+ K  K+IL     V + +      L T    + ++Y + + LSE D+S +  V
Sbjct: 1329 ----FKEGKQWKNILRNFVTVNDIQ-----KLTTASRCILNKYEIDELLSEFDRSTILRV 1379

Query: 231  LRHHPHYEEKVGNGLQGIKIGKNPDFPDTRCFMVERKDGSCVDFSYWKCLSR 76
            L  HP   EK+G G Q IK+G +P F D+RCF + R DG+  DFSY KC+ R
Sbjct: 1380 LNFHPRRSEKLGIGPQDIKVGWHPKFKDSRCFHIVRTDGTVEDFSYRKCILR 1431


>gb|ESW30447.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
          Length = 1463

 Score =  180 bits (456), Expect = 1e-42
 Identities = 126/412 (30%), Positives = 196/412 (47%), Gaps = 2/412 (0%)
 Frame = -3

Query: 1305 NSEVEV-LKLFSEVVIPKLLRIHVKGVQGVRSVVISGDEYSIAADK-NSKNGELVLLVEI 1132
            NSE  + L    +++IP  L   +KG   ++ V I  +  S   +  N  +GEL L V +
Sbjct: 1064 NSENPIQLNSVRDLMIPFFLGTTIKGFMDIKKVDILWNNQSKGTNSYNGSSGELYLRVTV 1123

Query: 1131 SSDISAQNSWKLLLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKM 952
            +S  +    W +L+ HC  +  IIDW RS+P N   +S + GI+ A +   + L   +  
Sbjct: 1124 ASSGNTGRFWGVLVNHCHKIMQIIDWPRSHPDNINYLSSAYGIDVAWQYYYKSLASAISD 1183

Query: 951  VEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAA 772
              K +  +HL L+ + +  +G F  L    + +      V +PF+QAC +NP +  ++AA
Sbjct: 1184 TGKSILPKHLRLLANSMSASGEFVGLNAKGMAQQRQHASVSSPFVQACFSNPGRSFIKAA 1243

Query: 771  KKGMQDNLLGSLDSLIWGNAPPLGTSGGFEILLNKEEMPSCSEPIVVDEILEITAKMGCK 592
            K  + DNL GSLD+L WGN P +GTSG F+I+ + E+     + + V ++LE +      
Sbjct: 1244 KSELTDNLQGSLDALAWGNCPSMGTSGLFDIIYS-EKGHEVDKAVDVYKLLEASF----- 1297

Query: 591  DKPLQSNRNQKTAYDRSMRDSRRVMEKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQ 412
            DKP     N K  +      S +   +    N Y                          
Sbjct: 1298 DKP-----NNKIGFHAHNNSSGKCGSEFRHKNGYA------------------------- 1327

Query: 411  MQSKNKDTKSLKSILHVSSKVENSEGKQEVLLRTLREILHSRYMVGQSLSETDKSLVENV 232
                 K+ K  K+IL     V + +      L T    + ++Y + + LSE D+S +  V
Sbjct: 1328 ----FKEGKQWKNILRNFVTVNDIQ-----KLTTASRCILNKYEIDELLSEFDRSTILRV 1378

Query: 231  LRHHPHYEEKVGNGLQGIKIGKNPDFPDTRCFMVERKDGSCVDFSYWKCLSR 76
            L  HP   EK+G G Q IK+G +P F D+RCF + R DG+  DFSY KC+ R
Sbjct: 1379 LNFHPRRSEKLGIGPQDIKVGWHPKFKDSRCFHIVRTDGTVEDFSYRKCILR 1430


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
            sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
            QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Cucumis sativus]
          Length = 1469

 Score =  180 bits (456), Expect = 1e-42
 Identities = 132/426 (30%), Positives = 206/426 (48%), Gaps = 7/426 (1%)
 Frame = -3

Query: 1287 LKLFSEVVIPKLLRIHVKGVQGVRSVVISGDEYSIAADKNSKNGELVLLVEISSDISAQN 1108
            L    +++I  LL   ++G   +  V I+ ++          +GEL L V +S + +++ 
Sbjct: 1082 LDFIQDLLIHFLLGTVIRGFTEIDRVDITWNDRPKVPKPRCSHGELYLRVTMSGEGNSR- 1140

Query: 1107 SWKLLLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRR 928
             W  L+ +C  + D+IDW RS+P N + +  + GI++  K  L  LE     V K +   
Sbjct: 1141 FWATLMNNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDVGKTIRLE 1200

Query: 927  HLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNL 748
            HL LV++ L  TG F  L    L       LV+ PFMQAC ++P   +++AAK G++DNL
Sbjct: 1201 HLLLVSNSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSSPGACMIKAAKAGIKDNL 1260

Query: 747  LGSLDSLIWGNAPPLGTSGGFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNR 568
             GSLD+L WG  P LGT G F+IL + +     ++P+ V  +L                 
Sbjct: 1261 SGSLDALAWGRMPSLGTGGQFDILYSGKG-HELNKPVDVYNLL----------------G 1303

Query: 567  NQKTAYDRSMRDSRRVMEKKAKYNSYVQN-DKVSIPPKESNRSSNHILGDGWQMQSKNKD 391
             Q T                 K N+ +++ DK +I  K S +           +++    
Sbjct: 1304 GQSTC---------------EKQNTKIESLDKNTISEKYSAQ---------LMLKNGGST 1339

Query: 390  TKSLKSILHVSSKVEN---SEGKQEVLLRTLREILHSRYMVGQSLSETDKSLVENVLRHH 220
             K LK +  VS  +     +    + L   LR ILH +Y + + L+E DKS +   L  H
Sbjct: 1340 IKGLKRLDSVSKSILRKFLTLNDIQKLSFALRTILH-KYSLNERLNEVDKSTLMMALYFH 1398

Query: 219  PHYEEKVGNGLQGIKIGKNPDFPDTRCFMVERKDGSCVDFSYWKCL---SRLNAPGRTNA 49
            PH +EK+G G Q IK+G +  + +TRCF++ R DG+  DFSY KC+     + AP R   
Sbjct: 1399 PHRDEKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTTEDFSYHKCVLGALEIIAPHRVKG 1458

Query: 48   MKEKHM 31
             + K M
Sbjct: 1459 YQSKWM 1464


>ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X4
            [Glycine max]
          Length = 1381

 Score =  179 bits (455), Expect = 2e-42
 Identities = 127/398 (31%), Positives = 193/398 (48%), Gaps = 1/398 (0%)
 Frame = -3

Query: 1272 EVVIPKLLRIHVKGVQGVRSV-VISGDEYSIAADKNSKNGELVLLVEISSDISAQNSWKL 1096
            ++VIP LL   ++G   V+ V ++  ++  +   +N  +GEL L V +SS+ S    W +
Sbjct: 1004 DLVIPFLLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRGRFWGV 1063

Query: 1095 LLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTL 916
            LLK C  +  IIDW RS+  N    S + GI+A  +     L C      K +  +HL L
Sbjct: 1064 LLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILPKHLCL 1123

Query: 915  VTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSL 736
            V + L  +G F  L    +        V +PF+QAC  NP    ++AAK G  DNL GSL
Sbjct: 1124 VANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGATDNLQGSL 1183

Query: 735  DSLIWGNAPPLGTSGGFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKT 556
            D L WGN   +GTSG F+++ + E+    ++ + V E+LE +      DKP         
Sbjct: 1184 DGLAWGNCLSMGTSGMFDVIYS-EKGHQVAKSVDVYELLEASF-----DKP--------- 1228

Query: 555  AYDRSMRDSRRVMEKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSLK 376
                    + ++     KY+S    DK     +  N         G+ +    K+ K  K
Sbjct: 1229 --------NNKIGTHLHKYSS----DKCGSEFRHKN---------GYAL----KEGKQWK 1263

Query: 375  SILHVSSKVENSEGKQEVLLRTLREILHSRYMVGQSLSETDKSLVENVLRHHPHYEEKVG 196
            +IL     V + +      L      + ++Y + + LSE+D+S +  VL  HPH  EK G
Sbjct: 1264 TILRNFVTVNDIQ-----KLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPHKSEKFG 1318

Query: 195  NGLQGIKIGKNPDFPDTRCFMVERKDGSCVDFSYWKCL 82
             G Q IK+G +P + D+RCF + R DG+  DFSY KC+
Sbjct: 1319 IGPQDIKVGWHPKYKDSRCFHIIRTDGTVEDFSYRKCI 1356


>ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Glycine max]
          Length = 1457

 Score =  179 bits (455), Expect = 2e-42
 Identities = 127/398 (31%), Positives = 193/398 (48%), Gaps = 1/398 (0%)
 Frame = -3

Query: 1272 EVVIPKLLRIHVKGVQGVRSV-VISGDEYSIAADKNSKNGELVLLVEISSDISAQNSWKL 1096
            ++VIP LL   ++G   V+ V ++  ++  +   +N  +GEL L V +SS+ S    W +
Sbjct: 1080 DLVIPFLLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRGRFWGV 1139

Query: 1095 LLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTL 916
            LLK C  +  IIDW RS+  N    S + GI+A  +     L C      K +  +HL L
Sbjct: 1140 LLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILPKHLCL 1199

Query: 915  VTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSL 736
            V + L  +G F  L    +        V +PF+QAC  NP    ++AAK G  DNL GSL
Sbjct: 1200 VANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGATDNLQGSL 1259

Query: 735  DSLIWGNAPPLGTSGGFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKT 556
            D L WGN   +GTSG F+++ + E+    ++ + V E+LE +      DKP         
Sbjct: 1260 DGLAWGNCLSMGTSGMFDVIYS-EKGHQVAKSVDVYELLEASF-----DKP--------- 1304

Query: 555  AYDRSMRDSRRVMEKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSLK 376
                    + ++     KY+S    DK     +  N         G+ +    K+ K  K
Sbjct: 1305 --------NNKIGTHLHKYSS----DKCGSEFRHKN---------GYAL----KEGKQWK 1339

Query: 375  SILHVSSKVENSEGKQEVLLRTLREILHSRYMVGQSLSETDKSLVENVLRHHPHYEEKVG 196
            +IL     V + +      L      + ++Y + + LSE+D+S +  VL  HPH  EK G
Sbjct: 1340 TILRNFVTVNDIQ-----KLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPHKSEKFG 1394

Query: 195  NGLQGIKIGKNPDFPDTRCFMVERKDGSCVDFSYWKCL 82
             G Q IK+G +P + D+RCF + R DG+  DFSY KC+
Sbjct: 1395 IGPQDIKVGWHPKYKDSRCFHIIRTDGTVEDFSYRKCI 1432


>ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Glycine max]
          Length = 1458

 Score =  179 bits (455), Expect = 2e-42
 Identities = 127/398 (31%), Positives = 193/398 (48%), Gaps = 1/398 (0%)
 Frame = -3

Query: 1272 EVVIPKLLRIHVKGVQGVRSV-VISGDEYSIAADKNSKNGELVLLVEISSDISAQNSWKL 1096
            ++VIP LL   ++G   V+ V ++  ++  +   +N  +GEL L V +SS+ S    W +
Sbjct: 1081 DLVIPFLLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRGRFWGV 1140

Query: 1095 LLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTL 916
            LLK C  +  IIDW RS+  N    S + GI+A  +     L C      K +  +HL L
Sbjct: 1141 LLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILPKHLCL 1200

Query: 915  VTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSL 736
            V + L  +G F  L    +        V +PF+QAC  NP    ++AAK G  DNL GSL
Sbjct: 1201 VANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGATDNLQGSL 1260

Query: 735  DSLIWGNAPPLGTSGGFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKT 556
            D L WGN   +GTSG F+++ + E+    ++ + V E+LE +      DKP         
Sbjct: 1261 DGLAWGNCLSMGTSGMFDVIYS-EKGHQVAKSVDVYELLEASF-----DKP--------- 1305

Query: 555  AYDRSMRDSRRVMEKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSLK 376
                    + ++     KY+S    DK     +  N         G+ +    K+ K  K
Sbjct: 1306 --------NNKIGTHLHKYSS----DKCGSEFRHKN---------GYAL----KEGKQWK 1340

Query: 375  SILHVSSKVENSEGKQEVLLRTLREILHSRYMVGQSLSETDKSLVENVLRHHPHYEEKVG 196
            +IL     V + +      L      + ++Y + + LSE+D+S +  VL  HPH  EK G
Sbjct: 1341 TILRNFVTVNDIQ-----KLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPHKSEKFG 1395

Query: 195  NGLQGIKIGKNPDFPDTRCFMVERKDGSCVDFSYWKCL 82
             G Q IK+G +P + D+RCF + R DG+  DFSY KC+
Sbjct: 1396 IGPQDIKVGWHPKYKDSRCFHIIRTDGTVEDFSYRKCI 1433


>ref|XP_006300646.1| hypothetical protein CARUB_v10019657mg [Capsella rubella]
            gi|482569356|gb|EOA33544.1| hypothetical protein
            CARUB_v10019657mg [Capsella rubella]
          Length = 1459

 Score =  179 bits (454), Expect = 2e-42
 Identities = 134/418 (32%), Positives = 206/418 (49%), Gaps = 5/418 (1%)
 Frame = -3

Query: 1269 VVIPKLLRIHVKGVQGVRSVVISGDEYSIAADK--NSKNGELVLLVEISSDISAQNSWKL 1096
            ++IP LL   VKG Q ++ V I   +   A     N   GEL L V ++ D   +N W  
Sbjct: 1072 ILIPFLLDSPVKGYQEIKKVDILWTDRPKAPKMYGNHLAGELYLRVTMNGDRGKRNCWSS 1131

Query: 1095 LLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTL 916
            L++ C  + D+IDW+RS+P N        GI+A + + +  LE  V    K + R HL L
Sbjct: 1132 LVETCLPIMDMIDWSRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKTILREHLLL 1191

Query: 915  VTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSL 736
              D L +TG F  L      K        APF QAC ++P +  ++AAK+G+ D L GS+
Sbjct: 1192 AADSLSITGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVVDQLQGSI 1251

Query: 735  DSLIWGNAPPLGTSGGFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKT 556
            D+L WG  P  GT   F+I+++  ++   + P+ V E+L              S+   KT
Sbjct: 1252 DTLAWGKVPGFGTGDQFDIIIS-PKVHGFTTPVDVYELL--------------SSIPPKT 1296

Query: 555  AYDRSMRDSRRVMEKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSLK 376
               R+              +S  ++DK  + P +       +L   +    K  + K + 
Sbjct: 1297 VTKRAT-------------SSAPKSDKFKVQPFD-------MLDTAFPKAFKALNGKGI- 1335

Query: 375  SILHVSSKVENSEGKQEVLLRTLREILHSRYMVGQSLSETDKSLVENVLRHHPHYEEKVG 196
            S+  + +     +   E L R+L+ IL++ Y V   LSE+D++ V  VL  HP+  EK+G
Sbjct: 1336 SLFQLRTMFTWED--VENLSRSLKHILNN-YEVNAPLSESDENFVSMVLCFHPNRAEKIG 1392

Query: 195  NGLQGIKIGKNPDFPDTRCFMVERKDGSCVDFSYWKCL---SRLNAPGRTNAMKEKHM 31
             G QGI++G N    D+RCF V R D +  DFSY KC+   +++ APGR N  K K++
Sbjct: 1393 PGFQGIRVG-NSKHGDSRCFEVVRIDDTTEDFSYHKCVLGATKIIAPGRMNFYKSKYL 1449


>ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
            [Glycine max]
          Length = 1455

 Score =  179 bits (453), Expect = 3e-42
 Identities = 126/398 (31%), Positives = 193/398 (48%), Gaps = 1/398 (0%)
 Frame = -3

Query: 1272 EVVIPKLLRIHVKGVQGVRSV-VISGDEYSIAADKNSKNGELVLLVEISSDISAQNSWKL 1096
            ++VIP LL   ++G   V+ V ++  ++  +   +N  +GEL L V +SS+ S    W +
Sbjct: 1081 DLVIPFLLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRGRFWGV 1140

Query: 1095 LLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKLCLQRLECFVKMVEKPVHRRHLTL 916
            LLK C  +  IIDW RS+  N    S + GI+A  +     L C      K +  +HL L
Sbjct: 1141 LLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILPKHLCL 1200

Query: 915  VTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACLTNPKKILVEAAKKGMQDNLLGSL 736
            V + L  +G F  L    +        V +PF+QAC  NP    ++AAK G  DNL GSL
Sbjct: 1201 VANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGATDNLQGSL 1260

Query: 735  DSLIWGNAPPLGTSGGFEILLNKEEMPSCSEPIVVDEILEITAKMGCKDKPLQSNRNQKT 556
            D L WGN   +GTSG F+++ +++     ++ + V E+LE +      DKP         
Sbjct: 1261 DGLAWGNCLSMGTSGMFDVIYSEK----VAKSVDVYELLEASF-----DKP--------- 1302

Query: 555  AYDRSMRDSRRVMEKKAKYNSYVQNDKVSIPPKESNRSSNHILGDGWQMQSKNKDTKSLK 376
                    + ++     KY+S    DK     +  N         G+ +    K+ K  K
Sbjct: 1303 --------NNKIGTHLHKYSS----DKCGSEFRHKN---------GYAL----KEGKQWK 1337

Query: 375  SILHVSSKVENSEGKQEVLLRTLREILHSRYMVGQSLSETDKSLVENVLRHHPHYEEKVG 196
            +IL     V + +      L      + ++Y + + LSE+D+S +  VL  HPH  EK G
Sbjct: 1338 TILRNFVTVNDIQ-----KLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPHKSEKFG 1392

Query: 195  NGLQGIKIGKNPDFPDTRCFMVERKDGSCVDFSYWKCL 82
             G Q IK+G +P + D+RCF + R DG+  DFSY KC+
Sbjct: 1393 IGPQDIKVGWHPKYKDSRCFHIIRTDGTVEDFSYRKCI 1430


>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Solanum tuberosum]
          Length = 1233

 Score =  178 bits (452), Expect = 4e-42
 Identities = 133/418 (31%), Positives = 194/418 (46%), Gaps = 2/418 (0%)
 Frame = -3

Query: 1329 TSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGVRSVVISGDEY-SIAADKNSKNGE 1153
            T SV+        +L    +VVIP LL   +KG    + V I   E  S +       GE
Sbjct: 833  TVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGSTGE 892

Query: 1152 LVLLVEISSDISAQNSWKLLLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKLCLQR 973
            L L V +S        W  L+  C  + D+IDW RSYP + + ++ + GI+ A +  L +
Sbjct: 893  LYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCK 952

Query: 972  LECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACLTNPK 793
            L   V    K +   HL L  D L  TG F  L    L        V +PFMQAC +NP 
Sbjct: 953  LHSAVSETGKKILPEHLVLAADSLTATGEFVPLSAKGLTLQRKAAGVISPFMQACFSNPG 1012

Query: 792  KILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEILLNKEEMPSCSEPIVVDEILEI 613
               V AAK G+ DNL GSL+SL WG  P +GT   F+I+ + +     +EPI V  +   
Sbjct: 1013 DSFVRAAKMGLSDNLQGSLESLAWGKTPSIGTGSSFDIIYSGKGYEP-AEPIDVYTL--- 1068

Query: 612  TAKMGCKDKPLQSNRNQKTAYDRSMRDSRRVMEKKAKYNSYVQNDKVSIPPKESNRSSNH 433
                      LQ++    T   +   D    M+ K+      + D ++            
Sbjct: 1069 ----------LQNHVTSGTPKVKVTLDEDGGMDGKSLARRLDRLDDLN------------ 1106

Query: 432  ILGDGWQMQSKNKDTKSLKSILHVSSKVENSEGKQEVLLRTLREILHSRYMVGQSLSETD 253
                        K  KS  SI  + S +  ++ K+  L ++L+++L S+Y + + L+E D
Sbjct: 1107 -----------KKSCKSEWSITKLRSFISFNDIKK--LSQSLKQML-SKYAIDRELNEAD 1152

Query: 252  KSLVENVLRHHPHYEEKVGNGL-QGIKIGKNPDFPDTRCFMVERKDGSCVDFSYWKCL 82
            K +    L+ HP   EK+G G  Q IKIG + ++ D+RCFM+ R DGS  DFSY KC+
Sbjct: 1153 KCIAMMALQFHPRRNEKIGKGAPQEIKIGYHKEYEDSRCFMLVRSDGSVEDFSYRKCM 1210


>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Solanum tuberosum]
          Length = 1446

 Score =  178 bits (452), Expect = 4e-42
 Identities = 133/418 (31%), Positives = 194/418 (46%), Gaps = 2/418 (0%)
 Frame = -3

Query: 1329 TSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGVRSVVISGDEY-SIAADKNSKNGE 1153
            T SV+        +L    +VVIP LL   +KG    + V I   E  S +       GE
Sbjct: 1046 TVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGSTGE 1105

Query: 1152 LVLLVEISSDISAQNSWKLLLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKLCLQR 973
            L L V +S        W  L+  C  + D+IDW RSYP + + ++ + GI+ A +  L +
Sbjct: 1106 LYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCK 1165

Query: 972  LECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACLTNPK 793
            L   V    K +   HL L  D L  TG F  L    L        V +PFMQAC +NP 
Sbjct: 1166 LHSAVSETGKKILPEHLVLAADSLTATGEFVPLSAKGLTLQRKAAGVISPFMQACFSNPG 1225

Query: 792  KILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEILLNKEEMPSCSEPIVVDEILEI 613
               V AAK G+ DNL GSL+SL WG  P +GT   F+I+ + +     +EPI V  +   
Sbjct: 1226 DSFVRAAKMGLSDNLQGSLESLAWGKTPSIGTGSSFDIIYSGKGYEP-AEPIDVYTL--- 1281

Query: 612  TAKMGCKDKPLQSNRNQKTAYDRSMRDSRRVMEKKAKYNSYVQNDKVSIPPKESNRSSNH 433
                      LQ++    T   +   D    M+ K+      + D ++            
Sbjct: 1282 ----------LQNHVTSGTPKVKVTLDEDGGMDGKSLARRLDRLDDLN------------ 1319

Query: 432  ILGDGWQMQSKNKDTKSLKSILHVSSKVENSEGKQEVLLRTLREILHSRYMVGQSLSETD 253
                        K  KS  SI  + S +  ++ K+  L ++L+++L S+Y + + L+E D
Sbjct: 1320 -----------KKSCKSEWSITKLRSFISFNDIKK--LSQSLKQML-SKYAIDRELNEAD 1365

Query: 252  KSLVENVLRHHPHYEEKVGNGL-QGIKIGKNPDFPDTRCFMVERKDGSCVDFSYWKCL 82
            K +    L+ HP   EK+G G  Q IKIG + ++ D+RCFM+ R DGS  DFSY KC+
Sbjct: 1366 KCIAMMALQFHPRRNEKIGKGAPQEIKIGYHKEYEDSRCFMLVRSDGSVEDFSYRKCM 1423


>gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus notabilis]
          Length = 1410

 Score =  177 bits (449), Expect = 9e-42
 Identities = 130/426 (30%), Positives = 195/426 (45%), Gaps = 10/426 (2%)
 Frame = -3

Query: 1329 TSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKGVQGVRSV-VISGDEYSIAADKNSKNGE 1153
            T S+    NS ++++ +  +++IP LL   VKG + +  V ++  D  + +      +GE
Sbjct: 999  TVSIECSKNSVIQLITV-QDLLIPFLLETIVKGFREIEKVDILWSDRSNTSKATRDSSGE 1057

Query: 1152 LVLLVEISSDISAQNSWKLLLKHCEAVTDIIDWNRSYPVNPYGVSHSLGIEAAKKLCLQR 973
            L L V +S D   ++ W  L+  C  + D+IDW+RS+P N        GI++  K  L  
Sbjct: 1058 LYLKVSMSGDSGVKSYWSTLMNDCLRIMDLIDWSRSHPENVNEFCSVYGIDSGWKFFLNN 1117

Query: 972  LECFVKMVEKPVHRRHLTLVTDCLCLTGAFNCLKNAALKKTVTKGLVEAPFMQACLTNPK 793
            LE  V  V K +   HL LV + L +TG F  L    L +      V  PF QAC +NP 
Sbjct: 1118 LESAVSDVGKTILPEHLLLVANTLSVTGNFVGLTPKGLARQREHASVATPFSQACFSNPA 1177

Query: 792  KILVEAAKKGMQDNLLGSLDSLIWGNAPPLGTSGGFEILLNKEEMPSCSEPIVVDEILEI 613
               ++AAK  + D L G+LD+L WGN PPLGT G FE++ + +      +PI V ++L  
Sbjct: 1178 ACFIKAAKAEVTDGLHGTLDALAWGNIPPLGTGGQFELVFSGKG-HEVDKPINVYDMLAT 1236

Query: 612  TAK---MGCKDKPLQSNRNQKTAYDRSMRDSRRVMEKKAKYNSYVQNDK-VSIPPKESNR 445
                   G  + P   N                   +  K+ + +  DK VS   K+   
Sbjct: 1237 GISPDVQGVNETPDAKN------------------HRSVKFGALLLYDKSVSQGLKKLGI 1278

Query: 444  SSNHI-----LGDGWQMQSKNKDTKSLKSILHVSSKVENSEGKQEVLLRTLREILHSRYM 280
            S + I     L D W                              +L   L +IL ++Y 
Sbjct: 1279 SKDRIKKLFKLDDIW------------------------------ILSNALAKIL-NKYP 1307

Query: 279  VGQSLSETDKSLVENVLRHHPHYEEKVGNGLQGIKIGKNPDFPDTRCFMVERKDGSCVDF 100
            + QSL   DKS +   L  HP  +EK+G G Q IK+  +P    +RCF++ R DG+  DF
Sbjct: 1308 INQSLDHKDKSTLMIALYFHPRIDEKIGTGFQDIKVAYHPKHQSSRCFVLVRADGTVEDF 1367

Query: 99   SYWKCL 82
            SY KC+
Sbjct: 1368 SYRKCV 1373