BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00001723
         (1354 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_001755196.1| predicted protein [Physcomitrella patens] gi...   273   9e-71
ref|XP_002511863.1| CRP, putative [Ricinus communis] gi|22354904...   266   1e-68
ref|XP_002993355.1| hypothetical protein SELMODRAFT_431456 [Sela...   263   2e-67
ref|XP_002972741.1| hypothetical protein SELMODRAFT_441953 [Sela...   262   3e-67
ref|XP_001776860.1| predicted protein [Physcomitrella patens] gi...   261   5e-67
ref|XP_002274479.2| PREDICTED: uncharacterized protein LOC100263...   259   2e-66
gb|EOX95959.1| Mediator of RNA polymerase II transcription subun...   258   3e-66
gb|EOX95958.1| Mediator of RNA polymerase II transcription subun...   258   3e-66
ref|XP_004306783.1| PREDICTED: mediator of RNA polymerase II tra...   258   5e-66
gb|EXC06808.1| Putative mediator of RNA polymerase II transcript...   256   2e-65
ref|XP_006827602.1| hypothetical protein AMTR_s00009p00238900 [A...   255   3e-65
emb|CBI40380.3| unnamed protein product [Vitis vinifera]              253   1e-64
ref|XP_006445035.1| hypothetical protein CICLE_v10018441mg [Citr...   253   1e-64
ref|XP_006445033.1| hypothetical protein CICLE_v10018441mg [Citr...   253   1e-64
gb|EOX95957.1| Mediator of RNA polymerase II transcription subun...   253   2e-64
ref|XP_004229878.1| PREDICTED: mediator of RNA polymerase II tra...   250   1e-63
gb|EMJ21769.1| hypothetical protein PRUPE_ppa000036mg [Prunus pe...   245   4e-62
ref|XP_001754008.1| predicted protein [Physcomitrella patens] gi...   243   1e-61
ref|XP_004155825.1| PREDICTED: mediator of RNA polymerase II tra...   242   2e-61
ref|XP_004133865.1| PREDICTED: mediator of RNA polymerase II tra...   242   2e-61

>ref|XP_001755196.1| predicted protein [Physcomitrella patens] gi|162693789|gb|EDQ80140.1|
            predicted protein [Physcomitrella patens]
          Length = 2111

 Score =  273 bits (699), Expect = 9e-71
 Identities = 166/410 (40%), Positives = 244/410 (59%), Gaps = 30/410 (7%)
 Frame = -2

Query: 1245 NKSLINCNKESIRKRLRAINNARVQKCKAGQVYGVPLSGPLLVKPGLFPEQRASREDFER 1066
            N   + C  +SIRKRLR ++ A ++K KAGQVYGVPLSG LL K G+FPE R   EDF +
Sbjct: 46   NPISVVCLFQSIRKRLRELSIALIRKRKAGQVYGVPLSGNLLAKSGVFPEHRTCGEDFRK 105

Query: 1065 NWIEGLSQPHKSLHSLAELVPHGYRKKALFAALIKHNVPLLRAT*FI*ICMSTAFLKKLV 886
             WIE LSQ  K L +LAE VPHGY+++ +F ALIKH+VPLLRAT FI I     +L + V
Sbjct: 106  KWIEDLSQ-RKRLRALAEHVPHGYQRRTIFEALIKHDVPLLRATWFIKI----IYLNQ-V 159

Query: 885  KPM------------QNNIIEINSQH-----RNI*EDLC-------------SINALKVL 796
            KPM            Q+  +E+ +++     +++ +DLC             S+    V 
Sbjct: 160  KPMSIGMSAGGPDKSQSKRVELWTKNVLEYTQSLLDDLCQTGGASGSHSQILSVRGDSVE 219

Query: 795  KQPRGRSRHYMLNGIIMQLLYWHFAEGLVHRATVIDWFLLQLQEESSLDALEMLLPVLLE 616
             +P   ++   + G    L  WH+ EGL++R  V+DW L QLQE+ S++ALE+LLP+LLE
Sbjct: 220  NEPDLLAKWRYIVG----LAQWHYTEGLLNRTQVVDWALKQLQEKESVEALELLLPILLE 275

Query: 615  FVDTIILSQSHVRTFVDAIIQWLRLLFPS*NVPALKDNAREAYNVIFFSEILRSFIIVVP 436
             VD I +SQ+H R  V+  +QWLR L+P  +VP++ DN+R         ++L+  ++V+P
Sbjct: 276  LVDGISMSQTHSRMLVELCLQWLRKLYPLGHVPSIGDNSRNNRVADTLVKLLQYLVLVIP 335

Query: 435  DTLVSLDCFPLPACVCMLPPDNCLYPLIFYGDSKGLSADLNISKQESADSLVERKISD*D 256
            DT V+LDCFPLP CV +             G S+  + + + +     +S   +  S  +
Sbjct: 336  DTFVALDCFPLPQCVSL-------------GGSESSAIESSSNDLGRVNSGKRKTYS--E 380

Query: 255  ISIANTIFFIQKRASNLAKSVCPAILRNNQDKVVQSLDRALALGDVKTAY 106
            + +  ++  IQKR ++LA +V P +LRNN+ K+VQ+LD+AL  GD+  AY
Sbjct: 381  VGVVESVDLIQKRTASLASAVSPTLLRNNEGKIVQALDKALEKGDIAGAY 430


>ref|XP_002511863.1| CRP, putative [Ricinus communis] gi|223549043|gb|EEF50532.1| CRP,
            putative [Ricinus communis]
          Length = 2264

 Score =  266 bits (681), Expect = 1e-68
 Identities = 173/447 (38%), Positives = 246/447 (55%), Gaps = 47/447 (10%)
 Frame = -2

Query: 1302 DDLQ*NKEISLSLVLEQFWNKSLINCNKESIRKRLRAINNARVQKCKAGQVYGVPLSGPL 1123
            + L+  +EISLS V + F +K ++   +E+IRK LRAIN +R QK KAGQVYGVPLSG L
Sbjct: 95   EGLEEAREISLSQV-QAFSSKPVVLKCREAIRKCLRAINESRAQKRKAGQVYGVPLSGSL 153

Query: 1122 LVKPGLFPEQRASREDFERNWIEGLSQPHKSLHSLAELVPHGYRKKALFAALIKHNVPLL 943
            L KPG+FPEQ+   EDF++ WIEGLSQPHK L SLA+ VPHGYRKK+LF  LI++NVPLL
Sbjct: 154  LAKPGVFPEQKPCGEDFKKKWIEGLSQPHKRLRSLADHVPHGYRKKSLFEVLIRNNVPLL 213

Query: 942  RAT*FI*ICMSTAFLKKLVKPMQNNII-----------------EINSQHRNI*EDLCSI 814
            RAT FI       +L + V+P   +I                  ++    + + ++  S 
Sbjct: 214  RATWFI----KVTYLNQ-VRPSSASISSGTPDKTQLSRTELWTKDVIEYLQILLDEFFSR 268

Query: 813  NALKVLKQPRGRSRHYMLNG-------------------------IIMQLLYWHFAEGLV 709
            N        R RS   +  G                          +++LL+WH +EGL+
Sbjct: 269  NNSHSALHTRDRSPQMLYAGSVQYRSDPATFSIDGEEPSLHFKWWYVVRLLHWHHSEGLL 328

Query: 708  HRATVIDWFLLQLQEESSLDALEMLLPVLLEFVDTIILSQSHVRTFVDAIIQWLRLLFPS 529
              + +IDW L QLQE+  L+ L++LLP++   +D+++LSQ++VRT     + ++R   PS
Sbjct: 329  LPSIIIDWVLSQLQEKDLLEILQLLLPIIYGVLDSVVLSQTYVRTLAGIAVHYIR--EPS 386

Query: 528  *NVPALKDNAREAYNVIFFSEILRSFIIVVPDTLVSLDCFPLPACVCMLPPDNCLYPLIF 349
                 L DN+R AY      E+LR  I+ VPDT V++DCFPLP  V     ++ ++    
Sbjct: 387  PGGSDLVDNSRRAYTTSALIEMLRYLILAVPDTFVAVDCFPLPPSVMSYAVNDGVF---- 442

Query: 348  YGDSKGLSADLNISKQESADSLVERKISD*D-----ISIANTIFFIQKRASNLAKSVCPA 184
                   S +   +K  SA  +   +    D      S    +  IQKR  NLAK+ CP 
Sbjct: 443  ---VSRASEEARKTKDNSAGVVGVFRSKGLDAQYQSFSFNQVVLSIQKREDNLAKAACPG 499

Query: 183  ILRNNQDKVVQSLDRALALGDVKTAYH 103
             L ++  K VQ+LD+AL LGD+K AY+
Sbjct: 500  YLVHSAAKAVQALDKALILGDIKEAYN 526


>ref|XP_002993355.1| hypothetical protein SELMODRAFT_431456 [Selaginella moellendorffii]
            gi|300138786|gb|EFJ05540.1| hypothetical protein
            SELMODRAFT_431456 [Selaginella moellendorffii]
          Length = 2096

 Score =  263 bits (671), Expect = 2e-67
 Identities = 166/396 (41%), Positives = 231/396 (58%), Gaps = 15/396 (3%)
 Frame = -2

Query: 1248 WNKSLINCNKESIRKRLRAINNARVQKCKAGQVYGVPLSGPLLVKPGLFPEQRASREDFE 1069
            W K  I+  KES+RKRLRA+ NA V+K KAGQVY VPL G LL K G FPE+    ED+ 
Sbjct: 118  WAKENISRYKESLRKRLRAVTNALVRKRKAGQVYDVPLVGALLAKAGQFPERHTYGEDYR 177

Query: 1068 RNWIEGLSQPHKSLHSLAELVPHGYRKKALFAALIKHNVPLLRAT*FI*I--------CM 913
            + WIE LSQ  K L  LAE VPHG+ ++ LF AL+K NVP LRAT FI I          
Sbjct: 178  KKWIEDLSQ-RKRLSLLAEHVPHGFHRRTLFEALVKQNVPFLRATWFIKISYLNQVRPAS 236

Query: 912  STAFLKKLVKPMQNNIIEINSQHRNI*EDLCSINALKVLKQPRG--RSRHYMLNG----- 754
            S    K   K ++    ++    +++ +++CS  +   L Q     +S    L+G     
Sbjct: 237  SAGADKSHGKRLEQWTRDVLDYAQSVLDEICSNASRAALAQAYDSVQSVETDLDGHAKWH 296

Query: 753  IIMQLLYWHFAEGLVHRATVIDWFLLQLQEESSLDALEMLLPVLLEFVDTIILSQSHVRT 574
             I++L+ W +AEGL+ ++ V++W L Q+QE+ SLD LE+LLPVLLEF+D++ LSQ HVR 
Sbjct: 297  YIVRLVQWQYAEGLLQQSHVVEWALKQIQEKESLDGLELLLPVLLEFMDSLSLSQVHVRM 356

Query: 573  FVDAIIQWLRLLFPS*NVPALKDNAREAYNVIFFSEILRSFIIVVPDTLVSLDCFPLPAC 394
             VD    WLR L  S  +P+ ++  ++   V+ F EILR  ++ VPDT V+ DCFPL  C
Sbjct: 357  LVDICQHWLRQLGVSNVLPSPEEQPQQYRIVVTFVEILRYLLVAVPDTFVAFDCFPLLPC 416

Query: 393  VCMLPPDNCLYPLIFYGDSKGLSADLNISKQESADSLVERKISD*DISIANTIFFIQKRA 214
            V  L        ++  GD K   AD         +    R     ++ I   +  IQKRA
Sbjct: 417  VTTLEG----MEIVKDGDPK---ADTTKGNGRPGNLCPYR-----EVYIMEVVDSIQKRA 464

Query: 213  SNLAKSVCPAILRNNQDKVVQSLDRALALGDVKTAY 106
            S+L K+V P +LRNN  KV+Q+LD++LA GD+ +A+
Sbjct: 465  SSLTKAVNPGVLRNNDGKVIQALDKSLAAGDLLSAF 500


>ref|XP_002972741.1| hypothetical protein SELMODRAFT_441953 [Selaginella moellendorffii]
            gi|300159342|gb|EFJ25962.1| hypothetical protein
            SELMODRAFT_441953 [Selaginella moellendorffii]
          Length = 2096

 Score =  262 bits (669), Expect = 3e-67
 Identities = 165/396 (41%), Positives = 231/396 (58%), Gaps = 15/396 (3%)
 Frame = -2

Query: 1248 WNKSLINCNKESIRKRLRAINNARVQKCKAGQVYGVPLSGPLLVKPGLFPEQRASREDFE 1069
            W K  I+  KES+RKRLRA+ NA V+K KAGQVY VPL G LL K G FPE+    ED+ 
Sbjct: 118  WAKENISRYKESLRKRLRAVTNALVRKRKAGQVYDVPLVGALLAKAGQFPERHTYGEDYR 177

Query: 1068 RNWIEGLSQPHKSLHSLAELVPHGYRKKALFAALIKHNVPLLRAT*FI*I--------CM 913
            + WIE LSQ  K L  LAE VPHG+ ++ LF AL+K NVP LRAT FI I          
Sbjct: 178  KKWIEDLSQ-RKRLSLLAEHVPHGFHRRTLFEALVKQNVPFLRATWFIKISYLNQVRPAS 236

Query: 912  STAFLKKLVKPMQNNIIEINSQHRNI*EDLCSINALKVLKQPRG--RSRHYMLNG----- 754
            S    K   K ++    ++    +++ +++CS  +   L Q     +S    L+G     
Sbjct: 237  SAGADKSHGKRLEQWTRDVLDYAQSVLDEICSNASRAALAQAYDSVQSVETDLDGHAKWH 296

Query: 753  IIMQLLYWHFAEGLVHRATVIDWFLLQLQEESSLDALEMLLPVLLEFVDTIILSQSHVRT 574
             I++L+ W +AEGL+ ++ V++W L Q+QE+ SLD LE+LLPVLLEF+D++ LSQ HVR 
Sbjct: 297  YIVRLVQWQYAEGLLQQSHVVEWALKQIQEKESLDGLELLLPVLLEFMDSLSLSQVHVRM 356

Query: 573  FVDAIIQWLRLLFPS*NVPALKDNAREAYNVIFFSEILRSFIIVVPDTLVSLDCFPLPAC 394
             VD    WLR L  S  +P+ ++  ++   V+ F EI+R  ++ VPDT V+ DCFPL  C
Sbjct: 357  LVDICQHWLRQLGVSNVLPSPEEQPQQYRIVVTFVEIMRYLLVAVPDTFVAFDCFPLLPC 416

Query: 393  VCMLPPDNCLYPLIFYGDSKGLSADLNISKQESADSLVERKISD*DISIANTIFFIQKRA 214
            V  L        ++  GD K   AD         +    R     ++ I   +  IQKRA
Sbjct: 417  VTTLEG----MEIVKDGDPK---ADTTKGNGRPGNLCPYR-----EVYIMEVVDSIQKRA 464

Query: 213  SNLAKSVCPAILRNNQDKVVQSLDRALALGDVKTAY 106
            S+L K+V P +LRNN  KV+Q+LD++LA GD+ +A+
Sbjct: 465  SSLTKAVNPGVLRNNDGKVIQALDKSLAAGDLLSAF 500


>ref|XP_001776860.1| predicted protein [Physcomitrella patens] gi|162671716|gb|EDQ58263.1|
            predicted protein [Physcomitrella patens]
          Length = 2120

 Score =  261 bits (667), Expect = 5e-67
 Identities = 151/410 (36%), Positives = 241/410 (58%), Gaps = 26/410 (6%)
 Frame = -2

Query: 1257 EQFWNKSLINCNKESIRKRLRAINNARVQKCKAGQVYGVPLSGPLLVKPGLFPEQRASRE 1078
            E  W +  +N  KESIRKRLR +N A ++K KAGQVYGVPL+G LL K G+FPE R   E
Sbjct: 51   EALWARPNVNRYKESIRKRLRELNIATIRKRKAGQVYGVPLTGQLLAKAGVFPEHRTCGE 110

Query: 1077 DFERNWIEGLSQPHKSLHSLAELVPHGYRKKALFAALIKHNVPLLRAT*FI*ICMSTAFL 898
            DF + W+E     +  L +LAE VPHGY+++ +F ALIKH VPLLRAT FI I     +L
Sbjct: 111  DFRKKWVEASVCVNGLLRALAEHVPHGYQRRTIFEALIKHEVPLLRATWFIKI----IYL 166

Query: 897  KKLVKPM------------QNNIIEINSQH-----RNI*EDLCSINALKVLKQPRGRSRH 769
             + VKPM            Q+  +++ +++     + + +DLC        +     +R 
Sbjct: 167  NQ-VKPMSIGMSAGGPDKSQSKRVDLWTKNVLEYIQTLLDDLCQAGGASGSRSQVLPTRS 225

Query: 768  YMLN---------GIIMQLLYWHFAEGLVHRATVIDWFLLQLQEESSLDALEMLLPVLLE 616
             ++            +++L  WH+ EGL++R  V+DW L QLQ++ SL+ALE+LLP++LE
Sbjct: 226  ALVEKEPDVLTKWRYVVRLAQWHYTEGLLNRTQVVDWTLKQLQDKESLEALELLLPIVLE 285

Query: 615  FVDTIILSQSHVRTFVDAIIQWLRLLFPS*NVPALKDNAREAYNVIFFSEILRSFIIVVP 436
             +D I  SQ H R  ++  +QWLR L+ S +VP+  D+++         ++L+  ++VVP
Sbjct: 286  LIDGISSSQIHSRMLIELCLQWLRKLYSSGHVPSTGDSSQNNQVADTLVKLLQYLLLVVP 345

Query: 435  DTLVSLDCFPLPACVCMLPPDNCLYPLIFYGDSKGLSADLNISKQESADSLVERKISD*D 256
            DT V+LDCFPLP  V +   ++          S  L    ++ + +S  +   ++ ++ +
Sbjct: 346  DTFVALDCFPLPQPVSLGGSNSS----AIESSSNDLGRVNSLDEDQSIFNAKGKRKTNFE 401

Query: 255  ISIANTIFFIQKRASNLAKSVCPAILRNNQDKVVQSLDRALALGDVKTAY 106
            + +  ++  I++R ++LA++V P +LRNN+ ++VQ+LD+AL  GD+  AY
Sbjct: 402  VGVDESVDLIERRTASLARAVSPTLLRNNEGRIVQALDKALEKGDIAGAY 451


>ref|XP_002274479.2| PREDICTED: uncharacterized protein LOC100263628 [Vitis vinifera]
          Length = 2272

 Score =  259 bits (661), Expect = 2e-66
 Identities = 166/437 (37%), Positives = 245/437 (56%), Gaps = 44/437 (10%)
 Frame = -2

Query: 1284 KEISLSLVLEQFWNKSLINCNKESIRKRLRAINNARVQKCKAGQVYGVPLSGPLLVKPGL 1105
            +EI+L+ + + F   +++ C KE+IRKRLRAIN +R QK KAGQVYGVPLSG LL KP +
Sbjct: 101  REIALTQI-QAFSKPTVLKC-KEAIRKRLRAINESRAQKRKAGQVYGVPLSGSLLTKPCV 158

Query: 1104 FPEQRASREDFERNWIEGLSQPHKSLHSLAELVPHGYRKKALFAALIKHNVPLLRAT*FI 925
            FPEQR   EDF + WIEGLSQ HK L SLA+ VPHG+RKK LF  LI++NVPLLRAT FI
Sbjct: 159  FPEQRPCGEDFRKKWIEGLSQHHKRLRSLADHVPHGFRKKNLFEVLIRNNVPLLRATWFI 218

Query: 924  *ICMSTAFLKKLVKPMQNNII-----------------EINSQHRNI*EDLCSINALKVL 796
                   +L + V+P   +I                  ++    + + E+  S N     
Sbjct: 219  ----KVTYLNQ-VRPASASISSGSPDKIQLSRTELWTKDVIDYLQGLLEEFFSRNNSHST 273

Query: 795  KQPRGRSRHYMLNG------------------------IIMQLLYWHFAEGLVHRATVID 688
            +  R +S+  +  G                         ++++L WH AEGL+  + +ID
Sbjct: 274  QHSRDKSQQILYAGSIQHKSDPVSGLDSEEPSLHFKWWYVVRILQWHHAEGLILPSLIID 333

Query: 687  WFLLQLQEESSLDALEMLLPVLLEFVDTIILSQSHVRTFVDAIIQWLRLLFPS*NVPALK 508
            W L QLQ++  L+ L++LLP++   ++T++LSQ++VRT V   +++++   PS     L 
Sbjct: 334  WALRQLQDKELLEILQLLLPIIYGVIETVVLSQTYVRTLVGVAVRFIK--EPSPGGSDLV 391

Query: 507  DNAREAYNVIFFSEILRSFIIVVPDTLVSLDCFPLPACVCMLPPDNCLYPLIFYGDSKGL 328
            DN+R AY      E+LR  I+ VPDT V+LDCFPLP CV     ++  +      D+  +
Sbjct: 392  DNSRRAYTSSALVEMLRFLILAVPDTFVALDCFPLPPCVVSHVANDGSFLTKVSEDTIKI 451

Query: 327  SADLNISKQESADSLVERKISD---*DISIANTIFFIQKRASNLAKSVCPAILRNNQDKV 157
                  ++     +++  K+ D     +S  + +  IQKRA NLAK+  P    +++ K 
Sbjct: 452  K-----NRPAEVPTVLRDKVLDGQYPSLSFDHIVSSIQKRADNLAKAASPGYPCHSEAKA 506

Query: 156  VQSLDRALALGDVKTAY 106
            VQ+LD+AL  GDV+ AY
Sbjct: 507  VQALDKALVDGDVRGAY 523


>gb|EOX95959.1| Mediator of RNA polymerase II transcription subunit 12 isoform 3
            [Theobroma cacao]
          Length = 2257

 Score =  258 bits (660), Expect = 3e-66
 Identities = 179/439 (40%), Positives = 234/439 (53%), Gaps = 40/439 (9%)
 Frame = -2

Query: 1302 DDLQ*NKEISLSLVLEQFWNKSLINCNKESIRKRLRAINNARVQKCKAGQVYGVPLSGPL 1123
            D L+ +KEISL+ V  Q + K ++   +++IRK LRAIN +R QK KAGQVYGVPLSG L
Sbjct: 95   DGLEDSKEISLTQV--QAFTKPVVLKCRDAIRKCLRAINESRAQKRKAGQVYGVPLSGAL 152

Query: 1122 LVKPGLFPEQRASREDFERNWIEGLSQPHKSLHSLAELVPHGYRKKALFAALIKHNVPLL 943
            L KPG+FPEQR   EDF + WIEGLSQ HK L SLA+ VPHGYRKK L   LI++NVPLL
Sbjct: 153  LSKPGVFPEQRPCNEDFRKKWIEGLSQQHKRLRSLADQVPHGYRKKTLIEVLIRNNVPLL 212

Query: 942  RAT*FI*I----------------------CMSTAFLKKLVKPMQNNIIEI----NSQHR 841
            RAT FI +                        +  + K ++  +Q  + E     NS   
Sbjct: 213  RATWFIKVTYLNQVHPGSAISSGAPDKAQLSRTELWTKDVIDYLQTLLDEFFPKSNSHST 272

Query: 840  NI*EDLCSINALKVLKQPRGRSRHYMLNG----------IIMQLLYWHFAEGLVHRATVI 691
                D           Q R  S   +L+G           +++LL WH AEGLV  + +I
Sbjct: 273  QHSRDRLPQMLYAGSLQHRIDSASTILDGGEPSLHFKWWYVVRLLQWHHAEGLVLPSLII 332

Query: 690  DWFLLQLQEESSLDALEMLLPVLLEFVDTIILSQSHVRTFVDAIIQWLRLLFPS*NVPAL 511
            DW L QLQE+   + L++LLP++   ++TIIL Q++VR  V   I+++R   PS     L
Sbjct: 333  DWLLNQLQEKELFEILQLLLPIIFGVLETIILCQTYVRNLVGIAIRFIR--EPSPGGSDL 390

Query: 510  KDNAREAYNVIFFSEILRSFIIVVPDTLVSLDCFPLPACVCMLPPDNCLYPLIFYGDSKG 331
             DN+R AY +    E+LR  I  VPDT V+LDCFPLP CV         + L   G    
Sbjct: 391  VDNSRRAYTISALVEMLRYLIQAVPDTFVALDCFPLPTCVVS-------HALNDGGFLSK 443

Query: 330  LSADLNISKQESADSLVER----KISD*DISIANTIFFIQKRASNLAKSVCPAILRNNQD 163
             S D    K  SAD+ V R          +S  + +  IQKRA NLAK         +  
Sbjct: 444  SSDDAGKIKHNSADAYVLRGKGFDSQYQSLSFDHVVSTIQKRADNLAKGTSAGYPSQSVA 503

Query: 162  KVVQSLDRALALGDVKTAY 106
            K VQ+LD+AL  GD+  AY
Sbjct: 504  KAVQTLDKALLQGDLMEAY 522


>gb|EOX95958.1| Mediator of RNA polymerase II transcription subunit 12 isoform 2
            [Theobroma cacao]
          Length = 2237

 Score =  258 bits (660), Expect = 3e-66
 Identities = 179/439 (40%), Positives = 234/439 (53%), Gaps = 40/439 (9%)
 Frame = -2

Query: 1302 DDLQ*NKEISLSLVLEQFWNKSLINCNKESIRKRLRAINNARVQKCKAGQVYGVPLSGPL 1123
            D L+ +KEISL+ V  Q + K ++   +++IRK LRAIN +R QK KAGQVYGVPLSG L
Sbjct: 95   DGLEDSKEISLTQV--QAFTKPVVLKCRDAIRKCLRAINESRAQKRKAGQVYGVPLSGAL 152

Query: 1122 LVKPGLFPEQRASREDFERNWIEGLSQPHKSLHSLAELVPHGYRKKALFAALIKHNVPLL 943
            L KPG+FPEQR   EDF + WIEGLSQ HK L SLA+ VPHGYRKK L   LI++NVPLL
Sbjct: 153  LSKPGVFPEQRPCNEDFRKKWIEGLSQQHKRLRSLADQVPHGYRKKTLIEVLIRNNVPLL 212

Query: 942  RAT*FI*I----------------------CMSTAFLKKLVKPMQNNIIEI----NSQHR 841
            RAT FI +                        +  + K ++  +Q  + E     NS   
Sbjct: 213  RATWFIKVTYLNQVHPGSAISSGAPDKAQLSRTELWTKDVIDYLQTLLDEFFPKSNSHST 272

Query: 840  NI*EDLCSINALKVLKQPRGRSRHYMLNG----------IIMQLLYWHFAEGLVHRATVI 691
                D           Q R  S   +L+G           +++LL WH AEGLV  + +I
Sbjct: 273  QHSRDRLPQMLYAGSLQHRIDSASTILDGGEPSLHFKWWYVVRLLQWHHAEGLVLPSLII 332

Query: 690  DWFLLQLQEESSLDALEMLLPVLLEFVDTIILSQSHVRTFVDAIIQWLRLLFPS*NVPAL 511
            DW L QLQE+   + L++LLP++   ++TIIL Q++VR  V   I+++R   PS     L
Sbjct: 333  DWLLNQLQEKELFEILQLLLPIIFGVLETIILCQTYVRNLVGIAIRFIR--EPSPGGSDL 390

Query: 510  KDNAREAYNVIFFSEILRSFIIVVPDTLVSLDCFPLPACVCMLPPDNCLYPLIFYGDSKG 331
             DN+R AY +    E+LR  I  VPDT V+LDCFPLP CV         + L   G    
Sbjct: 391  VDNSRRAYTISALVEMLRYLIQAVPDTFVALDCFPLPTCVVS-------HALNDGGFLSK 443

Query: 330  LSADLNISKQESADSLVER----KISD*DISIANTIFFIQKRASNLAKSVCPAILRNNQD 163
             S D    K  SAD+ V R          +S  + +  IQKRA NLAK         +  
Sbjct: 444  SSDDAGKIKHNSADAYVLRGKGFDSQYQSLSFDHVVSTIQKRADNLAKGTSAGYPSQSVA 503

Query: 162  KVVQSLDRALALGDVKTAY 106
            K VQ+LD+AL  GD+  AY
Sbjct: 504  KAVQTLDKALLQGDLMEAY 522


>ref|XP_004306783.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            12-like [Fragaria vesca subsp. vesca]
          Length = 2261

 Score =  258 bits (658), Expect = 5e-66
 Identities = 171/445 (38%), Positives = 247/445 (55%), Gaps = 46/445 (10%)
 Frame = -2

Query: 1302 DDLQ*NKEISLSLVLEQFWNKSLINCNKESIRKRLRAINNARVQKCKAGQVYGVPLSGPL 1123
            D ++ ++EISLS V  Q ++K L+   +E+I+KRLRAIN +R QK KAGQVYGVPL+  L
Sbjct: 95   DGIEESREISLSQV--QGFSKPLVFRCREAIKKRLRAINESRAQKRKAGQVYGVPLADSL 152

Query: 1122 LVKPGLFPEQRASREDFERNWIEGLSQPHKSLHSLAELVPHGYRKKALFAALIKHNVPLL 943
            L KPG+FPEQR   ED  + WIEGLSQ HK L SLA+ VPHGYRK++LF  L ++NVPLL
Sbjct: 153  LTKPGVFPEQRPCGEDLRKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLTRNNVPLL 212

Query: 942  RAT*FI*ICMSTAFLKKLVKPMQNNIIEINSQHRNI*EDLCSINALKVLK---------- 793
            RAT F+       +L + ++P  ++I  I  + +    +L + + ++ L+          
Sbjct: 213  RATWFV----KVTYLNQ-IRPGSSSISGIPDKTQLSRTELWTKDVIEYLQYLLDEFFSRN 267

Query: 792  ------QPRGRSRHYMLNGIIMQ-------------------------LLYWHFAEGLVH 706
                    R RS+  +  G + Q                         LL WH AEGL+ 
Sbjct: 268  NSLLSSHNRDRSQQMLYAGSVSQRSDPASSLLDGEEPSLHFKWWYVVRLLQWHHAEGLLL 327

Query: 705  RATVIDWFLLQLQEESSLDALEMLLPVLLEFVDTIILSQSHVRTFVDAIIQWLRLLFPS* 526
               +I+W L QLQE+  L+ +++LLP++   ++T++LSQ++VR  V   ++++R   PS 
Sbjct: 328  PTLIIEWVLRQLQEKELLEIVQLLLPIIYGVLETVVLSQTYVRNLVGTAVRFIR--EPSQ 385

Query: 525  NVPALKDNAREAYNVIFFSEILRSFIIVVPDTLVSLDCFPLPACVCMLPPDNCLYPLIFY 346
                L DN+R AY V    E+LR  ++ VPD+ V+LDCFPLP CV     +         
Sbjct: 386  GGSDLVDNSRRAYTVSALVEMLRYLVLSVPDSFVALDCFPLPPCVVSYVANE-------- 437

Query: 345  GDSKGLSADLNISKQESAD--SLVERKISD---*DISIANTIFFIQKRASNLAKSVCPAI 181
            G    LS D+   K  SA+  S+   K  D     ++  + +  IQKRA NL KS  P+ 
Sbjct: 438  GSLPKLSDDVRKIKIGSAEVASVFRSKAFDAQFQSLAFDHVVSSIQKRADNLEKSTSPSY 497

Query: 180  LRNNQDKVVQSLDRALALGDVKTAY 106
              ++  K VQ+LDR+L  GDV  AY
Sbjct: 498  PNHSIAKAVQALDRSLVQGDVLGAY 522


>gb|EXC06808.1| Putative mediator of RNA polymerase II transcription subunit 12
            [Morus notabilis]
          Length = 2274

 Score =  256 bits (654), Expect = 2e-65
 Identities = 166/437 (37%), Positives = 242/437 (55%), Gaps = 48/437 (10%)
 Frame = -2

Query: 1272 LSLVLEQFWNKSLINCNKESIRKRLRAINNARVQKCKAGQVYGVPLSGPLLVKPGLFPEQ 1093
            +SL     ++K ++   KE+IRK LRAIN +R QK KAGQVYGVPL+  LL KPG+FPEQ
Sbjct: 103  ISLTQAPTFSKPVVFKCKEAIRKCLRAINESRAQKRKAGQVYGVPLADSLLTKPGVFPEQ 162

Query: 1092 RASREDFERNWIEGLSQPHKSLHSLAELVPHGYRKKALFAALIKHNVPLLRAT*FI*ICM 913
            R   EDF + WIEGLSQ HK L SL + VPHGYRK++LF  +I++NVPLLRAT FI    
Sbjct: 163  RPCGEDFRKKWIEGLSQQHKRLRSLVDHVPHGYRKRSLFEVIIRNNVPLLRATWFI---- 218

Query: 912  STAFLKKLVKPMQNNIIEINSQH-----------------RNI*EDLCSINALKVLKQPR 784
               +L + V+P   NI    S                   +++ ++  + N        R
Sbjct: 219  KVTYLNQ-VRPGSVNISSGTSDKAQLSRTELWTKDVIDYLQHLLDEFFAKNHSHSTSHSR 277

Query: 783  GRSRHYMLNGII-------------------------MQLLYWHFAEGLVHRATVIDWFL 679
             RS  ++  G +                         M+LL WH+A+GL+  + +IDW L
Sbjct: 278  DRSTQFLYAGSVHQRSDPVSAGLDIEDSSLHFKWWYMMRLLQWHYADGLILPSLIIDWVL 337

Query: 678  LQLQEESSLDALEMLLPVLLEFVDTIILSQSHVRTFVDAIIQWLRLLFPS*NVPALKDNA 499
             QLQ++ SL+ +++LLP++   ++T++LSQ++VR+ V   ++++R   PS     L DN+
Sbjct: 338  RQLQDKESLEIVQLLLPIIYGVLETVVLSQTYVRSLVGIAVRFIR--EPSPGGSDLVDNS 395

Query: 498  REAYNVIFFSEILRSFIIVVPDTLVSLDCFPLPACVCM-LPPDNCLYPLIFYGDSKGLSA 322
            R+AY      E+LR  I+ VPDT V+LDCFPLP+CV   +  D  L        SK    
Sbjct: 396  RKAYTTSALVEMLRYLIVAVPDTFVALDCFPLPSCVVSHVVADGSL--------SKSSFE 447

Query: 321  DLNISKQESADSLVERKISD*D-----ISIANTIFFIQKRASNLAKSVCPAILRNNQDKV 157
            D+   K  S++  V  +    D     +++   +  IQKRA +LAK+  P    ++  KV
Sbjct: 448  DVRKIKIGSSEISVPFRSKGLDAQYQSLALDYVVSSIQKRADSLAKAARPGYPGHSVAKV 507

Query: 156  VQSLDRALALGDVKTAY 106
            V++LDR+  LGDV+ AY
Sbjct: 508  VEALDRSRVLGDVRGAY 524


>ref|XP_006827602.1| hypothetical protein AMTR_s00009p00238900 [Amborella trichopoda]
            gi|548832222|gb|ERM95018.1| hypothetical protein
            AMTR_s00009p00238900 [Amborella trichopoda]
          Length = 2276

 Score =  255 bits (652), Expect = 3e-65
 Identities = 172/450 (38%), Positives = 254/450 (56%), Gaps = 50/450 (11%)
 Frame = -2

Query: 1302 DDLQ*NKEISLSLVLEQFWNKSLINCNKESIRKRLRAINNARVQKCKAGQVYGVPLSGPL 1123
            D ++  +EI+L+ +     +K +I   KE+IRKRLRAIN +R QK KAGQVYGVPLSGPL
Sbjct: 94   DGIEEAREITLTQI--GTLSKPVIVRCKEAIRKRLRAINESRAQKRKAGQVYGVPLSGPL 151

Query: 1122 LVKPGLFPEQRASREDFERNWIEGLSQPHKSLHSLAELVPHGYRKKALFAALIKHNVPLL 943
            L+K G+FPEQR S EDF + WIEGLSQ HK L SLA+ VPHGYRK++LF  LI+HNVPLL
Sbjct: 152  LIKSGVFPEQRPSGEDFRKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRHNVPLL 211

Query: 942  RAT*FI*ICMSTAFLKKLVKPM--------QNNIIEINSQH-----RNI*EDLCSINALK 802
            RAT FI       +L + V+P+        Q+N  E+ ++      +++ ++        
Sbjct: 212  RATWFI----KVNYLNQ-VRPVPSGGPDKTQSNRTELWTKDVIDYLQHLLDEFLHNEGSH 266

Query: 801  VLKQPRGRSRHYMLNG--------------------------IIMQLLYWHFAEGLVHRA 700
             +   R  S    L G                           ++Q++ WH+AEGL+  +
Sbjct: 267  SVPHSRDHSPQTQLLGTGQHHGGDSIQVISDGEEPALQFKWWYMVQIIQWHYAEGLLLPS 326

Query: 699  TVIDWFLLQLQEESSLDALEMLLPVLLEFVDTIILSQSHVRTFVDAIIQWLRLLFPS*NV 520
             +I+W L QLQE  SL+ L++LLP++   +++I L QS+VR  VD  ++ L  L    + 
Sbjct: 327  QIIEWVLSQLQENESLEVLKLLLPIVYNLIESIALCQSYVRMLVDISLRSLEELATWVSN 386

Query: 519  PALKDNAREAYNVIFFSEILRSFIIVVPDTLVSLDCFPLPACVCMLPPDNCLYPLIFYGD 340
            P   DN+  +Y     +E+L+  I+ VPDT V+LD FPLP+CV              + D
Sbjct: 387  PV--DNSLRSYVASSLAELLQYLILNVPDTFVALDSFPLPSCV--------------FPD 430

Query: 339  SKGLSADLNIS------KQESADSLVE-----RKISD*DISIANTIFFIQKRASNLAKSV 193
            SK  SA + IS      +  SA++  +     R +S   ++  + +  IQ RA++L K+V
Sbjct: 431  SKNASALVTISPDVRKGQSGSAENFNKGTKKGRFVSGRQVAFRHVVSAIQIRAAHLTKAV 490

Query: 192  CPAILRNNQDKVVQSLDRALALGDVKTAYH 103
             P +  + + K+VQSLD+ L LGDV+ A++
Sbjct: 491  SPGLQGHLEAKLVQSLDKTLILGDVRGAHN 520


>emb|CBI40380.3| unnamed protein product [Vitis vinifera]
          Length = 2037

 Score =  253 bits (647), Expect = 1e-64
 Identities = 164/434 (37%), Positives = 232/434 (53%), Gaps = 41/434 (9%)
 Frame = -2

Query: 1284 KEISLSLVLEQFWNKSLINCNKESIRKRLRAINNARVQKCKAGQVYGVPLSGPLLVKPGL 1105
            +EI+L+ + + F   +++ C KE+IRKRLRAIN +R QK KAGQVYGVPLSG LL KP +
Sbjct: 101  REIALTQI-QAFSKPTVLKC-KEAIRKRLRAINESRAQKRKAGQVYGVPLSGSLLTKPCV 158

Query: 1104 FPEQRASREDFERNWIEGLSQPHKSLHSLAELVPHGYRKKALFAALIKHNVPLLRAT*FI 925
            FPEQR   EDF + WIEGLSQ HK L SLA+ VPHG+RKK LF  LI++NVPLLRAT FI
Sbjct: 159  FPEQRPCGEDFRKKWIEGLSQHHKRLRSLADHVPHGFRKKNLFEVLIRNNVPLLRATWFI 218

Query: 924  *ICMSTAFLKKLVKPMQNNII-----------------EINSQHRNI*EDLCSINALKVL 796
                   +L + V+P   +I                  ++    + + E+  S N     
Sbjct: 219  ----KVTYLNQ-VRPASASISSGSPDKIQLSRTELWTKDVIDYLQGLLEEFFSRNNSHST 273

Query: 795  KQPRGRSRHYMLNG------------------------IIMQLLYWHFAEGLVHRATVID 688
            +  R +S+  +  G                         ++++L WH AEGL+  + +ID
Sbjct: 274  QHSRDKSQQILYAGSIQHKSDPVSGLDSEEPSLHFKWWYVVRILQWHHAEGLILPSLIID 333

Query: 687  WFLLQLQEESSLDALEMLLPVLLEFVDTIILSQSHVRTFVDAIIQWLRLLFPS*NVPALK 508
            W L QLQ++  L+ L++LLP++   ++T++LSQ++VRT V   +++++   PS     L 
Sbjct: 334  WALRQLQDKELLEILQLLLPIIYGVIETVVLSQTYVRTLVGVAVRFIK--EPSPGGSDLV 391

Query: 507  DNAREAYNVIFFSEILRSFIIVVPDTLVSLDCFPLPACVCMLPPDNCLYPLIFYGDSKGL 328
            DN+R AY      E+LR  I+ VPDT V+LDCFPLP CV    P                
Sbjct: 392  DNSRRAYTSSALVEMLRFLILAVPDTFVALDCFPLPPCVVSHYP---------------- 435

Query: 327  SADLNISKQESADSLVERKISD*DISIANTIFFIQKRASNLAKSVCPAILRNNQDKVVQS 148
                                    +S  + +  IQKRA NLAK+  P    +++ K VQ+
Sbjct: 436  -----------------------SLSFDHIVSSIQKRADNLAKAASPGYPCHSEAKAVQA 472

Query: 147  LDRALALGDVKTAY 106
            LD+AL  GDV+ AY
Sbjct: 473  LDKALVDGDVRGAY 486


>ref|XP_006445035.1| hypothetical protein CICLE_v10018441mg [Citrus clementina]
            gi|567905096|ref|XP_006445036.1| hypothetical protein
            CICLE_v10018441mg [Citrus clementina]
            gi|567905098|ref|XP_006445037.1| hypothetical protein
            CICLE_v10018441mg [Citrus clementina]
            gi|568876055|ref|XP_006491101.1| PREDICTED: mediator of
            RNA polymerase II transcription subunit 12-like isoform
            X1 [Citrus sinensis] gi|568876057|ref|XP_006491102.1|
            PREDICTED: mediator of RNA polymerase II transcription
            subunit 12-like isoform X2 [Citrus sinensis]
            gi|557547297|gb|ESR58275.1| hypothetical protein
            CICLE_v10018441mg [Citrus clementina]
            gi|557547298|gb|ESR58276.1| hypothetical protein
            CICLE_v10018441mg [Citrus clementina]
            gi|557547299|gb|ESR58277.1| hypothetical protein
            CICLE_v10018441mg [Citrus clementina]
          Length = 2277

 Score =  253 bits (646), Expect = 1e-64
 Identities = 165/435 (37%), Positives = 239/435 (54%), Gaps = 46/435 (10%)
 Frame = -2

Query: 1272 LSLVLEQFWNKSLINCNKESIRKRLRAINNARVQKCKAGQVYGVPLSGPLLVKPGLFPEQ 1093
            +SL   Q +NK ++   +E+IRK LRAIN +R QK KAGQVYGVPLS  LL KPG+FPEQ
Sbjct: 103  ISLTQAQTFNKPVVLKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQ 162

Query: 1092 RASREDFERNWIEGLSQPHKSLHSLAELVPHGYRKKALFAALIKHNVPLLRAT*FI*ICM 913
            R   E+F + WIEGLSQ HK L SLA+ VPHGYRK++LF  LI++NVPLLRAT FI +  
Sbjct: 163  RPCGEEFRKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTY 222

Query: 912  -------STAFLKKLVKPMQNNIIEINSQH-----RNI*EDLCSINALKVLKQPRGRSRH 769
                   S   L      +Q +  EI ++      +++ ++  S N     +  R RS  
Sbjct: 223  LNQVRHGSANSLSGAQDKIQLSRTEIWTKDVIDYLQHLLDEFFSRNNSHSTQYSRDRSPQ 282

Query: 768  YMLNG------------------------IIMQLLYWHFAEGLVHRATVIDWFLLQLQEE 661
             +  G                         +++L+ WH AEGL+  + +I+W L QL+++
Sbjct: 283  TLYTGSPQQRSDPAAVINSEEPSLHFKWWYMVRLVQWHLAEGLLLPSYIIEWVLNQLKDK 342

Query: 660  SSLDALEMLLPVLLEFVDTIILSQSHVRTFVDAIIQWLRLLFPS*NVPALKDNAREAYNV 481
              L+ L+++LP++   ++T++ SQ++VR+ V     ++R   PS     L DN+R AY +
Sbjct: 343  ELLEILQLVLPIIYGVLETVVSSQTYVRSLVGIATHFIR--EPSPGGSDLVDNSRRAYTI 400

Query: 480  IFFSEILRSFIIVVPDTLVSLDCFPLPACVCMLPPDNCLYPLIFYGDSKG-----LSADL 316
               +E+LR  I+ VPDT V+LDCFPLP+CV            + Y  + G      S D+
Sbjct: 401  SALAEMLRYLILAVPDTFVALDCFPLPSCV------------VSYAANDGNFVSKASEDV 448

Query: 315  NISKQESADSLVERKISD*D-----ISIANTIFFIQKRASNLAKSVCPAILRNNQDKVVQ 151
               K  S D++   +    D     +S  N I  IQ+RA NLAK   P    ++  K VQ
Sbjct: 449  GKMKNYSTDAICVFRGKAVDAQYQSLSFDNVISAIQRRADNLAKDASPGYPGHSVAKAVQ 508

Query: 150  SLDRALALGDVKTAY 106
            +LD+AL  GD++ AY
Sbjct: 509  ALDKALLQGDIREAY 523


>ref|XP_006445033.1| hypothetical protein CICLE_v10018441mg [Citrus clementina]
            gi|567905092|ref|XP_006445034.1| hypothetical protein
            CICLE_v10018441mg [Citrus clementina]
            gi|567905100|ref|XP_006445038.1| hypothetical protein
            CICLE_v10018441mg [Citrus clementina]
            gi|568876059|ref|XP_006491103.1| PREDICTED: mediator of
            RNA polymerase II transcription subunit 12-like isoform
            X3 [Citrus sinensis] gi|557547295|gb|ESR58273.1|
            hypothetical protein CICLE_v10018441mg [Citrus
            clementina] gi|557547296|gb|ESR58274.1| hypothetical
            protein CICLE_v10018441mg [Citrus clementina]
            gi|557547300|gb|ESR58278.1| hypothetical protein
            CICLE_v10018441mg [Citrus clementina]
          Length = 2239

 Score =  253 bits (646), Expect = 1e-64
 Identities = 165/435 (37%), Positives = 239/435 (54%), Gaps = 46/435 (10%)
 Frame = -2

Query: 1272 LSLVLEQFWNKSLINCNKESIRKRLRAINNARVQKCKAGQVYGVPLSGPLLVKPGLFPEQ 1093
            +SL   Q +NK ++   +E+IRK LRAIN +R QK KAGQVYGVPLS  LL KPG+FPEQ
Sbjct: 65   ISLTQAQTFNKPVVLKCREAIRKCLRAINESRAQKRKAGQVYGVPLSDSLLTKPGVFPEQ 124

Query: 1092 RASREDFERNWIEGLSQPHKSLHSLAELVPHGYRKKALFAALIKHNVPLLRAT*FI*ICM 913
            R   E+F + WIEGLSQ HK L SLA+ VPHGYRK++LF  LI++NVPLLRAT FI +  
Sbjct: 125  RPCGEEFRKKWIEGLSQQHKRLRSLADHVPHGYRKRSLFEVLIRNNVPLLRATWFIKVTY 184

Query: 912  -------STAFLKKLVKPMQNNIIEINSQH-----RNI*EDLCSINALKVLKQPRGRSRH 769
                   S   L      +Q +  EI ++      +++ ++  S N     +  R RS  
Sbjct: 185  LNQVRHGSANSLSGAQDKIQLSRTEIWTKDVIDYLQHLLDEFFSRNNSHSTQYSRDRSPQ 244

Query: 768  YMLNG------------------------IIMQLLYWHFAEGLVHRATVIDWFLLQLQEE 661
             +  G                         +++L+ WH AEGL+  + +I+W L QL+++
Sbjct: 245  TLYTGSPQQRSDPAAVINSEEPSLHFKWWYMVRLVQWHLAEGLLLPSYIIEWVLNQLKDK 304

Query: 660  SSLDALEMLLPVLLEFVDTIILSQSHVRTFVDAIIQWLRLLFPS*NVPALKDNAREAYNV 481
              L+ L+++LP++   ++T++ SQ++VR+ V     ++R   PS     L DN+R AY +
Sbjct: 305  ELLEILQLVLPIIYGVLETVVSSQTYVRSLVGIATHFIR--EPSPGGSDLVDNSRRAYTI 362

Query: 480  IFFSEILRSFIIVVPDTLVSLDCFPLPACVCMLPPDNCLYPLIFYGDSKG-----LSADL 316
               +E+LR  I+ VPDT V+LDCFPLP+CV            + Y  + G      S D+
Sbjct: 363  SALAEMLRYLILAVPDTFVALDCFPLPSCV------------VSYAANDGNFVSKASEDV 410

Query: 315  NISKQESADSLVERKISD*D-----ISIANTIFFIQKRASNLAKSVCPAILRNNQDKVVQ 151
               K  S D++   +    D     +S  N I  IQ+RA NLAK   P    ++  K VQ
Sbjct: 411  GKMKNYSTDAICVFRGKAVDAQYQSLSFDNVISAIQRRADNLAKDASPGYPGHSVAKAVQ 470

Query: 150  SLDRALALGDVKTAY 106
            +LD+AL  GD++ AY
Sbjct: 471  ALDKALLQGDIREAY 485


>gb|EOX95957.1| Mediator of RNA polymerase II transcription subunit 12 isoform 1
            [Theobroma cacao]
          Length = 2261

 Score =  253 bits (645), Expect = 2e-64
 Identities = 179/443 (40%), Positives = 234/443 (52%), Gaps = 44/443 (9%)
 Frame = -2

Query: 1302 DDLQ*NKEISLSLVLEQFWNKSLINCNKESIRKRLRAINNARVQKCKAGQVYGVPLSGPL 1123
            D L+ +KEISL+ V  Q + K ++   +++IRK LRAIN +R QK KAGQVYGVPLSG L
Sbjct: 95   DGLEDSKEISLTQV--QAFTKPVVLKCRDAIRKCLRAINESRAQKRKAGQVYGVPLSGAL 152

Query: 1122 LVKPGLFPEQRASREDFERNWIEGLSQPHKSLHSLAELVPHGYRKKALFAALIKHNVPLL 943
            L KPG+FPEQR   EDF + WIEGLSQ HK L SLA+ VPHGYRKK L   LI++NVPLL
Sbjct: 153  LSKPGVFPEQRPCNEDFRKKWIEGLSQQHKRLRSLADQVPHGYRKKTLIEVLIRNNVPLL 212

Query: 942  RAT*FI*I----------------------CMSTAFLKKLVKPMQNNIIEI----NSQHR 841
            RAT FI +                        +  + K ++  +Q  + E     NS   
Sbjct: 213  RATWFIKVTYLNQVHPGSAISSGAPDKAQLSRTELWTKDVIDYLQTLLDEFFPKSNSHST 272

Query: 840  NI*EDLCSINALKVLKQPRGRSRHYMLNG----------IIMQLLYWHFAEGLVHRATVI 691
                D           Q R  S   +L+G           +++LL WH AEGLV  + +I
Sbjct: 273  QHSRDRLPQMLYAGSLQHRIDSASTILDGGEPSLHFKWWYVVRLLQWHHAEGLVLPSLII 332

Query: 690  DWFLLQLQ----EESSLDALEMLLPVLLEFVDTIILSQSHVRTFVDAIIQWLRLLFPS*N 523
            DW L QLQ    E+   + L++LLP++   ++TIIL Q++VR  V   I+++R   PS  
Sbjct: 333  DWLLNQLQVLNLEKELFEILQLLLPIIFGVLETIILCQTYVRNLVGIAIRFIR--EPSPG 390

Query: 522  VPALKDNAREAYNVIFFSEILRSFIIVVPDTLVSLDCFPLPACVCMLPPDNCLYPLIFYG 343
               L DN+R AY +    E+LR  I  VPDT V+LDCFPLP CV         + L   G
Sbjct: 391  GSDLVDNSRRAYTISALVEMLRYLIQAVPDTFVALDCFPLPTCVVS-------HALNDGG 443

Query: 342  DSKGLSADLNISKQESADSLVER----KISD*DISIANTIFFIQKRASNLAKSVCPAILR 175
                 S D    K  SAD+ V R          +S  + +  IQKRA NLAK        
Sbjct: 444  FLSKSSDDAGKIKHNSADAYVLRGKGFDSQYQSLSFDHVVSTIQKRADNLAKGTSAGYPS 503

Query: 174  NNQDKVVQSLDRALALGDVKTAY 106
             +  K VQ+LD+AL  GD+  AY
Sbjct: 504  QSVAKAVQTLDKALLQGDLMEAY 526


>ref|XP_004229878.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            12-like [Solanum lycopersicum]
          Length = 2262

 Score =  250 bits (638), Expect = 1e-63
 Identities = 169/438 (38%), Positives = 241/438 (55%), Gaps = 45/438 (10%)
 Frame = -2

Query: 1284 KEISLSLVLEQFWNKSLINCNKESIRKRLRAINNARVQKCKAGQVYGVPLSGPLLVKPGL 1105
            KEISL+  L  F    +  C KE+IRK  RAIN +R QK KAGQVYGVPL G  L KPG+
Sbjct: 98   KEISLTQ-LPAFTKPVIFKC-KEAIRKCHRAINESRAQKRKAGQVYGVPLEGLQLTKPGI 155

Query: 1104 FPEQRASREDFERNWIEGLSQPHKSLHSLAELVPHGYRKKALFAALIKHNVPLLRAT*FI 925
            FP+QR+S E+F + WIEGLSQ HK L SLA+ VPHGYR+K+LF  L+++NVPLLRAT F+
Sbjct: 156  FPDQRSSGEEFRKKWIEGLSQQHKRLKSLADHVPHGYRRKSLFEVLVRNNVPLLRATWFV 215

Query: 924  *ICMSTAFLKKLVKPMQNNII-----------------EINSQHRNI*EDLCSINALKVL 796
                   +L + V+P  ++I                  ++    + + ++  S N++   
Sbjct: 216  ----KVTYLNQ-VRPGSSSISSGVPDKTHISRSEQWTKDVIDYLQYLLDEFISRNSVHSA 270

Query: 795  KQPRGRSRHYMLNG-------------------------IIMQLLYWHFAEGLVHRATVI 691
             Q R RS+  +  G                          ++++L WH  EGL+  + VI
Sbjct: 271  LQIRDRSQQMVYAGSIPLKSDPTLGSVDCEEPSLHFKWWYVVRILQWHHREGLLIPSLVI 330

Query: 690  DWFLLQLQEESSLDALEMLLPVLLEFVDTIILSQSHVRTFVDAIIQWLRLLFPS*NVPAL 511
            DW L QLQE+  L  L++LLPV+  F+DT++LSQS VRT V   +++++   PS     L
Sbjct: 331  DWVLNQLQEKELLGVLQLLLPVVYGFIDTVVLSQSCVRTLVGIALRFIQ--EPSPGGSDL 388

Query: 510  KDNAREAYNVIFFSEILRSFIIVVPDTLVSLDCFPLPACVCM-LPPDNCLYPLIFYGDSK 334
             DN+R AY +    E+LR  ++ VPDT V+LDCFP+P CV   +  D  LY  +     K
Sbjct: 389  VDNSRRAYTMAALVEMLRYLMLAVPDTFVALDCFPMPPCVMTNVVTDGSLYSKVTEDTRK 448

Query: 333  GLSADLNISKQESADSLVER--KISD*DISIANTIFFIQKRASNLAKSVCPAILRNNQDK 160
              +        E A  L ++  +I     SI+  +  IQKRA +LA +  P     +  K
Sbjct: 449  VKNGPF-----EVAYFLRDKGPEIRSDSYSISRAVSSIQKRAQHLATAARPGHPGQSVVK 503

Query: 159  VVQSLDRALALGDVKTAY 106
             + +LD+ALA GD++ AY
Sbjct: 504  ALHALDKALAHGDLREAY 521


>gb|EMJ21769.1| hypothetical protein PRUPE_ppa000036mg [Prunus persica]
          Length = 2210

 Score =  245 bits (625), Expect = 4e-62
 Identities = 167/442 (37%), Positives = 240/442 (54%), Gaps = 43/442 (9%)
 Frame = -2

Query: 1302 DDLQ*NKEISLSLVLEQFWNKSLINCNKESIRKRLRAINNARVQKCKAGQVYGVPLSGPL 1123
            + ++ ++EISLS    Q +NK L+   KE+I+KR RAIN +R QK KAGQVYG PL+  L
Sbjct: 95   EGIEESREISLSQA--QVFNKPLVFRCKEAIKKRFRAINESRAQKRKAGQVYGAPLADTL 152

Query: 1122 LVKPGLFPEQRASREDFERNWIEGLSQPHKSLHSLAELVPHGYRKKALFAALIKHNVPLL 943
            L KPG+FPEQR   ED  + WIEGLSQ HK L SLA+ VPHGYRK+ LF  L ++NVPLL
Sbjct: 153  LSKPGVFPEQRHCGEDLRKKWIEGLSQQHKRLRSLADHVPHGYRKRPLFEVLTRNNVPLL 212

Query: 942  RAT*FI------------*ICMSTAFLKKLVKPMQNNIIEINSQHRNI*EDLCSINALKV 799
            RAT FI             I  S A  K  +   +    ++    + + ++L S N    
Sbjct: 213  RATWFIKVTYLNQVRPGSAIISSGAPDKAQLSRTELWTKDVIDYLQYLLDELFSRNNSHS 272

Query: 798  LKQPRGRSRHYMLNG-------------------------IIMQLLYWHFAEGLVHRATV 694
                R RS   +  G                          +++LL WH AEGL+    +
Sbjct: 273  TSHNRDRSPQTLYAGSVPQRSDPASAVPDGEEPSLHFKWWYVVRLLQWHHAEGLLLPTLI 332

Query: 693  IDWFLLQLQEESSLDALEMLLPVLLEFVDTIILSQSHVRTFVDAIIQWLRLLFPS*NVPA 514
            I+W L QLQE+  L+ +++LLP++   ++T++LSQ++VR  V   ++++R   PS     
Sbjct: 333  IEWVLSQLQEKELLEIMQLLLPIVYGVLETVVLSQTYVRNLVGVAVRFIR--EPSQGGSD 390

Query: 513  LKDNAREAYNVIFFSEILRSFIIVVPDTLVSLDCFPLPACVCM------LPPDNCLYPLI 352
            +  N+R AY V    E+LR  I+ VPDT V+LDCFPLP+CV        LP  +     I
Sbjct: 391  VVGNSRRAYTVSTVVEMLRYLILAVPDTFVALDCFPLPSCVVSYIVNDGLPKMSEDVRKI 450

Query: 351  FYGDSKGLSADLNISKQESADSLVERKISD*DISIANTIFFIQKRASNLAKSVCPAILRN 172
              G ++  SA     + +  D+  +       ++  + +  IQKRA NLAK+  P+   +
Sbjct: 451  GNGPAEVASA----FRSKGFDAQYQ------SLAFDHVVSSIQKRADNLAKAASPSYPFH 500

Query: 171  NQDKVVQSLDRALALGDVKTAY 106
            +  K VQ+LDR+L  GDV+ AY
Sbjct: 501  SIAKAVQALDRSLVQGDVRGAY 522


>ref|XP_001754008.1| predicted protein [Physcomitrella patens] gi|162694984|gb|EDQ81330.1|
            predicted protein [Physcomitrella patens]
          Length = 390

 Score =  243 bits (620), Expect = 1e-61
 Identities = 147/375 (39%), Positives = 218/375 (58%), Gaps = 29/375 (7%)
 Frame = -2

Query: 1173 QKCKAGQVYGVPLSGPLLVKPGLFPEQRASREDFERNWIEGLSQPHKSLHSLAELVPHGY 994
            +K KAGQVYGVPLSG LL K G+FP+ R   +DF + WIE LSQ  K L +LAE VPHGY
Sbjct: 5    RKRKAGQVYGVPLSGNLLAKSGVFPDHRTCGDDFRKKWIEDLSQ-RKRLRALAEHVPHGY 63

Query: 993  RKKALFAALIKHNVPLLRAT*FI*ICMSTAFLKKLVKPMQ-------------------- 874
            +++ +F ALIKH+VPLLRAT FI I     FL + VKPM                     
Sbjct: 64   QRRTIFEALIKHDVPLLRATWFIKII----FLNQ-VKPMSIGMSAGGPDKSQSKRVGLWT 118

Query: 873  NNIIEINSQHRNI*EDLCSINALK----VLKQPRGRSRHYMLNGI-----IMQLLYWHFA 721
             N++E     +++ +DLC           +   RG S     + +     I+ L  WH+ 
Sbjct: 119  KNVLEYT---QSLLDDLCQTGGASGSHSQILSVRGDSVENEPDLLAKWRYIVSLEQWHYI 175

Query: 720  EGLVHRATVIDWFLLQLQEESSLDALEMLLPVLLEFVDTIILSQSHVRTFVDAIIQWLRL 541
            EGL++R  V+DW L QLQE+ S++ALE+LLP+LLE +D I +SQ+H R  V+  +QWLR 
Sbjct: 176  EGLLNRTQVVDWALKQLQEKESVEALELLLPILLELIDGISMSQTHSRMLVELCLQWLRK 235

Query: 540  LFPS*NVPALKDNAREAYNVIFFSEILRSFIIVVPDTLVSLDCFPLPACVCMLPPDNCLY 361
            L+P  +VP++ DN+R         ++L+  ++V+PDT V+LDCFPLP CV +   ++   
Sbjct: 236  LYPLGHVPSIGDNSRNNQVADTLVKLLQYLVLVIPDTFVALDCFPLPQCVSLGGSESS-- 293

Query: 360  PLIFYGDSKGLSADLNISKQESADSLVERKISD*DISIANTIFFIQKRASNLAKSVCPAI 181
                   S  L    ++ +  S      ++ +  ++ +  ++  I+KR ++LA +V P +
Sbjct: 294  --AIESSSNDLGRVNSVVEDRSIMYAKGKRKTYSEVGVVESVDLIEKRNASLASAVSPTL 351

Query: 180  LRNNQDKVVQSLDRA 136
            LRNN+ K+VQ+LD+A
Sbjct: 352  LRNNEGKIVQALDKA 366


>ref|XP_004155825.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            12-like [Cucumis sativus]
          Length = 2254

 Score =  242 bits (618), Expect = 2e-61
 Identities = 171/456 (37%), Positives = 241/456 (52%), Gaps = 45/456 (9%)
 Frame = -2

Query: 1338 NITG*LTQSKF---TDDLQ*NKEISLSLVLEQFWNKSLINCNKESIRKRLRAINNARVQK 1168
            N+T    QS +    + L+ ++EI L+ V  Q ++K L+   K++ RKRLRAIN++R QK
Sbjct: 80   NLTREYVQSGYRETVEGLEESREILLTQV--QAFSKHLVIKCKDATRKRLRAINDSRAQK 137

Query: 1167 CKAGQVYGVPLSGPLLVKPGLFPEQRASREDFERNWIEGLSQPHKSLHSLAELVPHGYRK 988
             KAGQVYGVPLS  LL KPG+FPEQR   EDF + WIEGLSQ HK L SLA+ VPHGYRK
Sbjct: 138  RKAGQVYGVPLSVSLLTKPGIFPEQRPCGEDFRKKWIEGLSQQHKRLRSLADNVPHGYRK 197

Query: 987  KALFAALIKHNVPLLRAT*FI*I----------------------CMSTAFLKKLVKPMQ 874
            +ALF  LI++NVPLLRAT FI I                         T F  K V    
Sbjct: 198  RALFEVLIRNNVPLLRATWFIKINYLNQVRPNSASISCGAFDKAQLSRTEFWTKDVVDYL 257

Query: 873  NNIIE---------INSQHRNI*EDLCSINALKVLKQP------RGRSRHYMLNGIIMQL 739
              ++E         +   +++    + S+        P         S H+    ++  L
Sbjct: 258  ECLVEEFFSKSNSHLTPPNKDRSPQMFSVGFTHTKGDPPAVFDGEEPSLHFKWWYVVRLL 317

Query: 738  LYWHFAEGLVHRATVIDWFLLQLQEESSLDALEMLLPVLLEFVDTIILSQSHVRTFVDAI 559
            L WH AEGL+  + ++DW L QL+E   L+ LE+LLP++   +DTI+LSQ++VRT V   
Sbjct: 318  L-WHQAEGLLLPSLIVDWVLGQLEENDVLEILELLLPIIYGVLDTIVLSQTYVRTLVRIS 376

Query: 558  IQWLRLLFPS*NVPALKDNAREAYNVIFFSEILRSFIIVVPDTLVSLDCFPLPACVCMLP 379
            I+++R  FP  +   L DN+R  Y      E+LR  ++ VPDT V+LDCFP P CV    
Sbjct: 377  IRFIRDSFPGGS--DLVDNSRRVYTTSALVEMLRYLVLAVPDTFVALDCFPFPRCVVSHT 434

Query: 378  PDNCLYPLIFYGDSKGLSADLNISKQESADSLVERKISD*DI-----SIANTIFFIQKRA 214
             ++  +          +  D+   +  SA+     +    D      +  N +  I+K A
Sbjct: 435  VNDGNF-------GSKVPEDVTKLRYTSAEVASPFRSKSIDFQYQSSAFDNVVSSIRKCA 487

Query: 213  SNLAKSVCPAILRNNQDKVVQSLDRALALGDVKTAY 106
             NLAK+V P     +  K V +LD++L  GD+  AY
Sbjct: 488  DNLAKAVNPKFPVCSVAKAVHALDKSLLHGDIGVAY 523


>ref|XP_004133865.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            12-like [Cucumis sativus]
          Length = 2254

 Score =  242 bits (618), Expect = 2e-61
 Identities = 171/456 (37%), Positives = 241/456 (52%), Gaps = 45/456 (9%)
 Frame = -2

Query: 1338 NITG*LTQSKF---TDDLQ*NKEISLSLVLEQFWNKSLINCNKESIRKRLRAINNARVQK 1168
            N+T    QS +    + L+ ++EI L+ V  Q ++K L+   K++ RKRLRAIN++R QK
Sbjct: 80   NLTREYVQSGYRETVEGLEESREILLTQV--QAFSKHLVIKCKDATRKRLRAINDSRAQK 137

Query: 1167 CKAGQVYGVPLSGPLLVKPGLFPEQRASREDFERNWIEGLSQPHKSLHSLAELVPHGYRK 988
             KAGQVYGVPLS  LL KPG+FPEQR   EDF + WIEGLSQ HK L SLA+ VPHGYRK
Sbjct: 138  RKAGQVYGVPLSVSLLTKPGIFPEQRPCGEDFRKKWIEGLSQQHKRLRSLADNVPHGYRK 197

Query: 987  KALFAALIKHNVPLLRAT*FI*I----------------------CMSTAFLKKLVKPMQ 874
            +ALF  LI++NVPLLRAT FI I                         T F  K V    
Sbjct: 198  RALFEVLIRNNVPLLRATWFIKINYLNQVRPNSASISCGAFDKAQLSRTEFWTKDVVDYL 257

Query: 873  NNIIE---------INSQHRNI*EDLCSINALKVLKQP------RGRSRHYMLNGIIMQL 739
              ++E         +   +++    + S+        P         S H+    ++  L
Sbjct: 258  ECLVEEFFSKSNSHLTPPNKDRSPQMFSVGFTHTKGDPPAVFDGEEPSLHFKWWYVVRLL 317

Query: 738  LYWHFAEGLVHRATVIDWFLLQLQEESSLDALEMLLPVLLEFVDTIILSQSHVRTFVDAI 559
            L WH AEGL+  + ++DW L QL+E   L+ LE+LLP++   +DTI+LSQ++VRT V   
Sbjct: 318  L-WHQAEGLLLPSLIVDWVLGQLEENDVLEILELLLPIIYGVLDTIVLSQTYVRTLVRIS 376

Query: 558  IQWLRLLFPS*NVPALKDNAREAYNVIFFSEILRSFIIVVPDTLVSLDCFPLPACVCMLP 379
            I+++R  FP  +   L DN+R  Y      E+LR  ++ VPDT V+LDCFP P CV    
Sbjct: 377  IRFIRDSFPGGS--DLVDNSRRVYTTSALVEMLRYLVLAVPDTFVALDCFPFPRCVVSHT 434

Query: 378  PDNCLYPLIFYGDSKGLSADLNISKQESADSLVERKISD*DI-----SIANTIFFIQKRA 214
             ++  +          +  D+   +  SA+     +    D      +  N +  I+K A
Sbjct: 435  VNDGNF-------GSKVPEDVTKLRYTSAEVASPFRSKSIDFQYQSSAFDNVVSSIRKCA 487

Query: 213  SNLAKSVCPAILRNNQDKVVQSLDRALALGDVKTAY 106
             NLAK+V P     +  K V +LD++L  GD+  AY
Sbjct: 488  DNLAKAVNPKFPVCSVAKAVHALDKSLLHGDIGVAY 523