BLASTX nr result
ID: Ephedra26_contig00000847
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00000847
(3461 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 914 0.0
gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro... 911 0.0
gb|ESW25208.1| hypothetical protein PHAVU_003G016600g [Phaseolus... 904 0.0
gb|ESW25207.1| hypothetical protein PHAVU_003G016600g [Phaseolus... 904 0.0
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa... 900 0.0
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu... 898 0.0
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 898 0.0
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 896 0.0
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 895 0.0
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 894 0.0
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 893 0.0
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 893 0.0
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper... 890 0.0
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 889 0.0
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 889 0.0
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 884 0.0
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 882 0.0
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu... 880 0.0
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 880 0.0
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] 876 0.0
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 914 bits (2362), Expect = 0.0
Identities = 489/1030 (47%), Positives = 663/1030 (64%), Gaps = 14/1030 (1%)
Frame = -2
Query: 3166 AELKNMLKCTLHMCCPIAEYTFCVLHSTTEVLVDLETNSRKICMYLQDNSVEYKLELSYT 2987
A L +M + TLH C +++ FCVL V V + RK +L S EYKLELSY
Sbjct: 92 AFLHSMDRITLHFGCQMSDERFCVLWKAINVSVKFGSGLRKFYFFLSHGSEEYKLELSYE 151
Query: 2986 DIRYVIGDQLKDSENKIALLRLRHAPRVYYRIYDYFNRKLKQRRENVYEWVRTTDYTGSG 2807
+I + + K L++L AP++Y + + K+ ++ +WVR D+T S
Sbjct: 152 NIWQIQLQHPRGQITKFLLIQLLGAPQIYEKDVPVLSYYFKEAPDD--QWVREIDFTPSC 209
Query: 2806 SIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILNPPEGCD 2627
I +S E+ +E F +Y++++ LE ++ N + IL PP+G
Sbjct: 210 FIGQSFALCLELPYGSQLPNFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSS 269
Query: 2626 VPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLEFNAENIVHKPF 2447
+PF ++FK+N L+Q G +S PTLD FF + +R ++ ++ A KL ++ + ++P
Sbjct: 270 LPFQILFKINTLVQNGCLSGPTLDTSFFRLVDPERFPISFIEHALEKL-YHLKECCYEPV 328
Query: 2446 DWLGEKLKAAENSNENGDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHFAE 2267
WL E+ + G L GL Y+ +V +TP ++YFC PE+ VSNRVLR++ E
Sbjct: 329 RWLSEQYRTYVKKPVAGSPAIS-LDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPE 387
Query: 2266 HIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKKFEFL 2087
I+NFLRVSF+DEN + S+ +S + T +Y+RIL +LQ GIVIG+KKF+FL
Sbjct: 388 DIDNFLRVSFLDENLEKIHSTVISPRMSKEGRR--TGVYRRILSILQNGIVIGDKKFDFL 445
Query: 2086 AYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTETYDIQ 1907
A+SSSQLR++S WMFAS ++A IR WMG+F I+NVAK A+R+GQS SSS ET +
Sbjct: 446 AFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVA 505
Query: 1906 KNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKGV 1727
K++ E I DIE+ + Y+FSDGIG+IS A +VA KCG PSAFQIRY GYKGV
Sbjct: 506 KDEIENIPDIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGV 565
Query: 1726 VAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDSVFE 1547
VA+DPT +S KLSLR SM KY S N +LDVL+W+KY+P +LNRQ+I LLSTLGVKD VFE
Sbjct: 566 VAVDPT-SSRKLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFE 624
Query: 1546 TLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEFR 1367
Q A+ +D+ L+D A E L+ M GEN N+L +MLMCGY P +EP+L MML+ FR
Sbjct: 625 KKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFR 684
Query: 1366 ASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYDD-------K 1208
A+KLLEL+ + RIFV NGR++MGCLDETRTL+YGEVF+QI+ ++ D
Sbjct: 685 AAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGS 744
Query: 1207 YQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECSGSD 1028
+ +EGK+VVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G RPHPNECSGSD
Sbjct: 745 HHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSD 804
Query: 1027 LDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGIIAN 848
LDGDIYFV WD LIPPQ PMDY P K LDH+V ++E++E+F N++VND+LGIIAN
Sbjct: 805 LDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIAN 864
Query: 847 GHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPQELFPKEYPDFMEKDDKKT 668
H +FAD+E D A C LA+L SIAVDFPKTG+PAE+P+ L KEYPDFMEK DK T
Sbjct: 865 AHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPT 924
Query: 667 YRSDRILGKLYRSVKGVATLDYNIR---LDNKKDIYDTELIVCGFEGYVDEALKYKRMYD 497
Y S ++GKL+R VK +A + NIR D + YD ++ V GFE YV +A YK YD
Sbjct: 925 YESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYD 984
Query: 496 SGMYRLMKHYEANSEAEIISGNIQTLXXXXXXSKRKNGEIREESMKSVNSLMKEARGWFE 317
+ LM +Y +E+EI+SG+I + +RK+ E ++K SL KEAR WF
Sbjct: 985 YKLGNLMDYYGIKTESEILSGSIMRM--SKSFDRRKDAEAIGLAVK---SLRKEARTWFN 1039
Query: 316 RSKIATKNK----YPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDILLEIKKK 149
+ T ++ Y KASAWYHV+YHPDY +E + +SFPW ++D L+ K+K
Sbjct: 1040 KMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNE-GMDRDHFLSFPWCVYDKLIHTKRK 1098
Query: 148 RLSRKDSNMS 119
++S + ++S
Sbjct: 1099 KMSGRSLHLS 1108
>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao]
Length = 1109
Score = 911 bits (2355), Expect = 0.0
Identities = 495/1027 (48%), Positives = 667/1027 (64%), Gaps = 13/1027 (1%)
Frame = -2
Query: 3160 LKNMLKCTLHMCCPIAEYTFCVLHSTTEVLVDLETNSRKICMYLQDNSVEYKLELSYTDI 2981
L M TLH C ++ F VL +V V+ RK+ L + VEY+L+L Y +I
Sbjct: 93 LHTMEGVTLHFGCQVSNEKFYVLWEEVDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENI 152
Query: 2980 RYVIGDQLKDSENKIALLRLRHAPRVYYRIYDYFNRKLKQRRENVY------EWVRTTDY 2819
+ + ++ +K L++L APR+Y + + N + +WVRTTD+
Sbjct: 153 WQIELHRPRNQTSKYLLIQLFGAPRIYEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDF 212
Query: 2818 TGSGSIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILNPP 2639
T S I +SS E+ + +E F +Y++SE LE ++ N + I+ P
Sbjct: 213 TQSSCIGQSSVLCLELPYYLQLPNFRENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPS 272
Query: 2638 EGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLEFNAENIV 2459
G D+P+ ++FK+N L+Q G I P LD F+ ++ R + A KL + E
Sbjct: 273 LGIDLPYEILFKINLLVQNGCIPGPALDANFYRLVNPCRIDKVYIDHALEKLYYLKE-CC 331
Query: 2458 HKPFDWLGEKLKAAENSNENGDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLR 2279
+P WL E+ K S +N + L GL + +V +TPSR+YFC PEI VSNRVLR
Sbjct: 332 FEPSKWLLEQYKGYIASKKNPGSPVISLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLR 391
Query: 2278 HFAEHIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKK 2099
HF + I+NFLR++FVDE + S+DL T NR T+IY RIL L+ GIVIG+K+
Sbjct: 392 HFHDDIDNFLRITFVDEELEKIHSTDLL--TRNR----ITEIYGRILSTLKNGIVIGDKQ 445
Query: 2098 FEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTET 1919
FEFLA+SSSQLRE+S WMFAS ++A IR WMG F I+NVAK A+R+GQS SSSTET
Sbjct: 446 FEFLAFSSSQLRENSAWMFASREGLTAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTET 505
Query: 1918 YDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAG 1739
+ K++ E I+D+E++R+G Y+FSDGIG+IS FA++VA KC +G+ PSAFQIR G
Sbjct: 506 LSVAKDEIEIIDDVEIKRDGINYVFSDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGG 565
Query: 1738 YKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKD 1559
+KGVVA+DPT +S KLSLR SM KY S N LDVL+W+KY+PC+LNRQ+I LLSTLGV D
Sbjct: 566 FKGVVAVDPT-SSKKLSLRGSMSKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPD 624
Query: 1558 SVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMML 1379
FE Q + + +++ L D KA E L+ M GEN NIL +ML+CGY P +EP+L MML
Sbjct: 625 HAFEEKQREVVDQLNAILTDPLKAQEALELMSPGENTNILKEMLLCGYEPDAEPFLSMML 684
Query: 1378 EEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYDDKYQG 1199
+ FRASKLLEL+ ++RIFV+NGR++MGCLDETRTL YG+VF+Q++ +++
Sbjct: 685 QTFRASKLLELRTKSRIFVANGRSMMGCLDETRTLDYGQVFVQVSGSRSEQR-------- 736
Query: 1198 YLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECSGSDLDG 1019
V+GKVVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G RPHPNECSGSDLDG
Sbjct: 737 -FIVQGKVVVAKNPCLHPGDVRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDG 795
Query: 1018 DIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGIIANGHL 839
DIYFV WD LIP + PMDY P K L+HEVT++E++E+F N++VND+LGIIAN H
Sbjct: 796 DIYFVCWDPELIPSKQIPPMDYSPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHT 855
Query: 838 IFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPQELFPKEYPDFMEKDDKKTYRS 659
+FAD+EP A SS+C LA+L SIAVDFPKTG+PAE+PQEL KEYPDFMEK DK TY+S
Sbjct: 856 VFADREPRKAMSSECKWLAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQS 915
Query: 658 DRILGKLYRSVKGVATLDYNIR---LDNKKDIYDTELIVCGFEGYVDEALKYKRMYDSGM 488
++GKL+R VK +A + IR + + YD ++ V G+E YVD+A +K YD +
Sbjct: 916 YNVIGKLFREVKDLAPNECFIRSLTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKL 975
Query: 487 YRLMKHYEANSEAEIISGNIQTLXXXXXXSKRKNGEIREESMKSVNSLMKEARGWFERSK 308
LM++Y +EAEI+SG I + +K+++ E +V SL KEAR WF
Sbjct: 976 GNLMEYYGIKTEAEILSGGIMKM--SRSFTKQRDA---EAIGVAVRSLRKEARSWFNEKG 1030
Query: 307 IATKNK----YPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDILLEIKKKRLS 140
++ Y KASAWYHV+YHP Y +E + +SFPW ++D L+ IKKK S
Sbjct: 1031 NGLDSEADDLYAKASAWYHVTYHPSYWGLYNE-GMNRNHFLSFPWCVYDKLILIKKKVTS 1089
Query: 139 RKDSNMS 119
R++S +S
Sbjct: 1090 RRNSRLS 1096
>gb|ESW25208.1| hypothetical protein PHAVU_003G016600g [Phaseolus vulgaris]
gi|561026569|gb|ESW25209.1| hypothetical protein
PHAVU_003G016600g [Phaseolus vulgaris]
Length = 1122
Score = 904 bits (2335), Expect = 0.0
Identities = 488/1035 (47%), Positives = 682/1035 (65%), Gaps = 22/1035 (2%)
Frame = -2
Query: 3169 GAELKNMLKCTLHMCCPIAEYTFCVLHSTTEVLVDLETNSRKICMYLQDNSVEYKLELSY 2990
G L ++ ++ CPI++ F VL +V + + RK+ + N V+Y+LELSY
Sbjct: 94 GMNLPSLEGVKVYFGCPISKEVFSVLEEMKDVSLTFGSGKRKVQLMFSHNLVQYRLELSY 153
Query: 2989 TDIRYVIGDQLKDSENKIA---LLRLRHAPRVYYR---------IYDYFNRKLKQRRENV 2846
+I V +L N+ A L++L APR++ F+ L ++V
Sbjct: 154 ENIWKV---ELIRPRNRTACYLLVQLLGAPRIFENGVQTYSEDVFVSIFDNPLYNFFKDV 210
Query: 2845 YE--WVRTTDYTGSGSIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTP 2672
E W RT D+T I +SS E S+ N K F +Y +SE+ L+ F+
Sbjct: 211 PEDQWTRTIDFTKDSCIGQSSAICLEFSREQNLPNFKNIFAYYEQSERQYTLQIGIPFSQ 270
Query: 2671 NTKNLAILNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAF 2492
N NL + P+G ++P+ ++FK+N+L+Q + P L+ F+ + +R + ++ A
Sbjct: 271 NW-NLVPIVAPQGVEIPYDILFKVNSLVQHACLPGPALNADFYRLVDPRRMPLDFIENAL 329
Query: 2491 TKLEFNAENIVHKPFDWLGEKLKAAENSNENGDTDDKPLAKGLFYINKVDVTPSRIYFCR 2312
KL ++ E ++P WL + S + + L GL Y+ +V +TP ++YFC
Sbjct: 330 EKLYYSKE-FCYEPAKWLTNQYNKYLKSKHHPRSPTISLDAGLVYVRRVQITPCKVYFCG 388
Query: 2311 PEIQVSNRVLRHFAEHIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDV 2132
PE+ VSNRVLRHF EH++NF+RVSFVDE + S+DLS +R+ KK T++Y+RILD+
Sbjct: 389 PEVNVSNRVLRHFHEHLDNFIRVSFVDEELDKMFSTDLS----SRAQKK-TEVYKRILDI 443
Query: 2131 LQEGIVIGNKKFEFLAYSSSQLRESSLWMFASTGI-VSADSIRKWMGNFWAIKNVAKCAS 1955
L+ GI+IG+KKFEFLA+SSSQLRE+SLWMFA TG SA IR+WMGNF I+NVAK A+
Sbjct: 444 LKNGILIGDKKFEFLAFSSSQLRENSLWMFAPTGTGCSAAFIREWMGNFSRIRNVAKYAA 503
Query: 1954 RMGQSLSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDG 1775
R+GQS SSTET +++++ E I+D++ G +Y+FSDGIG+IS+ FA++VAKKCG+D
Sbjct: 504 RLGQSFGSSTETLSVRRDEIEIIHDVKRTCGGIEYVFSDGIGKISLEFAKRVAKKCGYDC 563
Query: 1774 KIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQ 1595
PSAFQIRY GYKGVVA+DP + +KLSLRNSMRKY S N LDVL +K++PC+LNRQ
Sbjct: 564 T-PSAFQIRYGGYKGVVAVDPE-SPYKLSLRNSMRKYDSDNTKLDVLGRSKFQPCFLNRQ 621
Query: 1594 IIILLSTLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGY 1415
+I LLSTLG+KD VFE Q +A+ +++ L D KA EVL M +GE N+L +ML+CGY
Sbjct: 622 LITLLSTLGIKDGVFEKKQREAVDQLNTILTDSLKAQEVLDLMSTGEITNVLKEMLICGY 681
Query: 1414 CPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHP- 1238
P EP+L MML+ FRASKLLEL+ ++RIF+ GRA+MGCLDET TL+YG+VF+Q ++
Sbjct: 682 KPNEEPFLSMMLQVFRASKLLELRLKSRIFIPKGRAMMGCLDETSTLEYGQVFVQFSNNR 741
Query: 1237 ----SEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQ 1070
S+ C D + Y+ V GKVVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ
Sbjct: 742 LRDLSDDDSCSYDLPKTYMVV-GKVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQ 800
Query: 1069 QGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHF 890
+G RPHPNECSGSDLDGDIYFV WD L+P + QPMDY +LDH+VT++E++E+F
Sbjct: 801 KGTRPHPNECSGSDLDGDIYFVCWDPELVPSGEVQPMDYTPSSTIELDHDVTIEEVEEYF 860
Query: 889 VNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPQELFP 710
N++VND+LGIIAN H +FAD +P A S++CL+LA+L S AVDFPKTG+PA +P+EL+
Sbjct: 861 CNYIVNDSLGIIANAHTVFADNQPGKAMSAQCLQLAKLFSTAVDFPKTGVPAVIPRELYA 920
Query: 709 KEYPDFMEKDDKKTYRSDRILGKLYRSVKGVATLD--YNIRLDNKKDIYDTELIVCGFEG 536
KEYPDFMEK DK TY+S ++GKL+R VK ++ D + + + YDTE+ V GF
Sbjct: 921 KEYPDFMEKSDKVTYKSPNVIGKLFREVKEISADDSISSFTQEVARRSYDTEMEVDGFMD 980
Query: 535 YVDEALKYKRMYDSGMYRLMKHYEANSEAEIISGNIQTLXXXXXXSKRKNGEIREESMKS 356
YVD+A+ YK YD + LM +Y +E EI+SGNI + +KR++ E +
Sbjct: 981 YVDDAIYYKTNYDYKLGNLMDYYGIKTEGEILSGNITKM--SKSFNKRRDAEAVN---VA 1035
Query: 355 VNSLMKEARGWFERSKIATKNKYPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLH 176
V SL KEAR WF + + Y KASAWYHV+YHP + ++ + + +SFPW ++
Sbjct: 1036 VRSLRKEARSWFNEGS-SDDDAYAKASAWYHVTYHPSFWGSYNDEGMNRDHYLSFPWCVY 1094
Query: 175 DILLEIKKKRLSRKD 131
LL+IKK+++S ++
Sbjct: 1095 PQLLQIKKEKMSMRN 1109
>gb|ESW25207.1| hypothetical protein PHAVU_003G016600g [Phaseolus vulgaris]
Length = 1145
Score = 904 bits (2335), Expect = 0.0
Identities = 488/1035 (47%), Positives = 682/1035 (65%), Gaps = 22/1035 (2%)
Frame = -2
Query: 3169 GAELKNMLKCTLHMCCPIAEYTFCVLHSTTEVLVDLETNSRKICMYLQDNSVEYKLELSY 2990
G L ++ ++ CPI++ F VL +V + + RK+ + N V+Y+LELSY
Sbjct: 117 GMNLPSLEGVKVYFGCPISKEVFSVLEEMKDVSLTFGSGKRKVQLMFSHNLVQYRLELSY 176
Query: 2989 TDIRYVIGDQLKDSENKIA---LLRLRHAPRVYYR---------IYDYFNRKLKQRRENV 2846
+I V +L N+ A L++L APR++ F+ L ++V
Sbjct: 177 ENIWKV---ELIRPRNRTACYLLVQLLGAPRIFENGVQTYSEDVFVSIFDNPLYNFFKDV 233
Query: 2845 YE--WVRTTDYTGSGSIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTP 2672
E W RT D+T I +SS E S+ N K F +Y +SE+ L+ F+
Sbjct: 234 PEDQWTRTIDFTKDSCIGQSSAICLEFSREQNLPNFKNIFAYYEQSERQYTLQIGIPFSQ 293
Query: 2671 NTKNLAILNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAF 2492
N NL + P+G ++P+ ++FK+N+L+Q + P L+ F+ + +R + ++ A
Sbjct: 294 NW-NLVPIVAPQGVEIPYDILFKVNSLVQHACLPGPALNADFYRLVDPRRMPLDFIENAL 352
Query: 2491 TKLEFNAENIVHKPFDWLGEKLKAAENSNENGDTDDKPLAKGLFYINKVDVTPSRIYFCR 2312
KL ++ E ++P WL + S + + L GL Y+ +V +TP ++YFC
Sbjct: 353 EKLYYSKE-FCYEPAKWLTNQYNKYLKSKHHPRSPTISLDAGLVYVRRVQITPCKVYFCG 411
Query: 2311 PEIQVSNRVLRHFAEHIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDV 2132
PE+ VSNRVLRHF EH++NF+RVSFVDE + S+DLS +R+ KK T++Y+RILD+
Sbjct: 412 PEVNVSNRVLRHFHEHLDNFIRVSFVDEELDKMFSTDLS----SRAQKK-TEVYKRILDI 466
Query: 2131 LQEGIVIGNKKFEFLAYSSSQLRESSLWMFASTGI-VSADSIRKWMGNFWAIKNVAKCAS 1955
L+ GI+IG+KKFEFLA+SSSQLRE+SLWMFA TG SA IR+WMGNF I+NVAK A+
Sbjct: 467 LKNGILIGDKKFEFLAFSSSQLRENSLWMFAPTGTGCSAAFIREWMGNFSRIRNVAKYAA 526
Query: 1954 RMGQSLSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDG 1775
R+GQS SSTET +++++ E I+D++ G +Y+FSDGIG+IS+ FA++VAKKCG+D
Sbjct: 527 RLGQSFGSSTETLSVRRDEIEIIHDVKRTCGGIEYVFSDGIGKISLEFAKRVAKKCGYDC 586
Query: 1774 KIPSAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQ 1595
PSAFQIRY GYKGVVA+DP + +KLSLRNSMRKY S N LDVL +K++PC+LNRQ
Sbjct: 587 T-PSAFQIRYGGYKGVVAVDPE-SPYKLSLRNSMRKYDSDNTKLDVLGRSKFQPCFLNRQ 644
Query: 1594 IIILLSTLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGY 1415
+I LLSTLG+KD VFE Q +A+ +++ L D KA EVL M +GE N+L +ML+CGY
Sbjct: 645 LITLLSTLGIKDGVFEKKQREAVDQLNTILTDSLKAQEVLDLMSTGEITNVLKEMLICGY 704
Query: 1414 CPRSEPYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHP- 1238
P EP+L MML+ FRASKLLEL+ ++RIF+ GRA+MGCLDET TL+YG+VF+Q ++
Sbjct: 705 KPNEEPFLSMMLQVFRASKLLELRLKSRIFIPKGRAMMGCLDETSTLEYGQVFVQFSNNR 764
Query: 1237 ----SEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQ 1070
S+ C D + Y+ V GKVVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ
Sbjct: 765 LRDLSDDDSCSYDLPKTYMVV-GKVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQ 823
Query: 1069 QGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHF 890
+G RPHPNECSGSDLDGDIYFV WD L+P + QPMDY +LDH+VT++E++E+F
Sbjct: 824 KGTRPHPNECSGSDLDGDIYFVCWDPELVPSGEVQPMDYTPSSTIELDHDVTIEEVEEYF 883
Query: 889 VNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPQELFP 710
N++VND+LGIIAN H +FAD +P A S++CL+LA+L S AVDFPKTG+PA +P+EL+
Sbjct: 884 CNYIVNDSLGIIANAHTVFADNQPGKAMSAQCLQLAKLFSTAVDFPKTGVPAVIPRELYA 943
Query: 709 KEYPDFMEKDDKKTYRSDRILGKLYRSVKGVATLD--YNIRLDNKKDIYDTELIVCGFEG 536
KEYPDFMEK DK TY+S ++GKL+R VK ++ D + + + YDTE+ V GF
Sbjct: 944 KEYPDFMEKSDKVTYKSPNVIGKLFREVKEISADDSISSFTQEVARRSYDTEMEVDGFMD 1003
Query: 535 YVDEALKYKRMYDSGMYRLMKHYEANSEAEIISGNIQTLXXXXXXSKRKNGEIREESMKS 356
YVD+A+ YK YD + LM +Y +E EI+SGNI + +KR++ E +
Sbjct: 1004 YVDDAIYYKTNYDYKLGNLMDYYGIKTEGEILSGNITKM--SKSFNKRRDAEAVN---VA 1058
Query: 355 VNSLMKEARGWFERSKIATKNKYPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLH 176
V SL KEAR WF + + Y KASAWYHV+YHP + ++ + + +SFPW ++
Sbjct: 1059 VRSLRKEARSWFNEGS-SDDDAYAKASAWYHVTYHPSFWGSYNDEGMNRDHYLSFPWCVY 1117
Query: 175 DILLEIKKKRLSRKD 131
LL+IKK+++S ++
Sbjct: 1118 PQLLQIKKEKMSMRN 1132
>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
[Nicotiana glutinosa]
Length = 1117
Score = 900 bits (2325), Expect = 0.0
Identities = 495/1025 (48%), Positives = 670/1025 (65%), Gaps = 16/1025 (1%)
Frame = -2
Query: 3160 LKNMLKCTLHMCCPIAEYTFCVLHSTTEVLVDLETNSRKICMYLQDNSVEYKLELSYTDI 2981
+++M TL+ C I++ F VL S V + +KI +L S +YKL+LSY +I
Sbjct: 92 VQHMDGVTLNFGCQISDKKFAVLGSKV-VSIKFGIGLKKIYFFLSYGSTDYKLQLSYENI 150
Query: 2980 RYVIGDQLKDSENKIALLRLRHAPRVYYRIYDYFNRKLKQRRENVYEWVRTTDYTGSGSI 2801
V+ + + + LL+L APR+Y R+ D K+ ++ +WVRTTD+T S I
Sbjct: 151 WQVVLHRPYGQKAQFLLLQLSGAPRIYKRLEDSCYSFFKETPDD--QWVRTTDFTPSW-I 207
Query: 2800 AKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLA---ILNPPEGC 2630
SS E V E+F +Y++S + L+ F+ + K LA I++ PEG
Sbjct: 208 GLSSSLCLEFHNGVRLPNFSESFFYYKESANQVILQTGFTFSFSQKKLALVPIVHLPEGI 267
Query: 2629 DVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLEFNAENIVHKP 2450
++P+ ++FK+++L+Q G L+ FF + +R ++A ++ A KL + E + P
Sbjct: 268 ELPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKE-CCYDP 326
Query: 2449 FDWLGEKLKAAENSNENGDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHFA 2270
WL E+ + + L GL Y+ +V VTP ++YFC PE+ VSNRVLR+++
Sbjct: 327 VRWLTEQYDEYLKRRQLPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYS 386
Query: 2269 EHIENFLRVSFVDENRACLRSSDL--SWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKKF 2096
E I+NFLRVSFVDE + S+DL +TGN TDIY RIL L+ G VIG+KKF
Sbjct: 387 EDIDNFLRVSFVDEEWEKIHSTDLLPRASTGNGVR---TDIYLRILSTLRNGFVIGDKKF 443
Query: 2095 EFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTETY 1916
EFLA+SSSQLR++S+WMFAS ++A+ IR WMG F I+NVAK A+R+GQS SS ET
Sbjct: 444 EFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETL 503
Query: 1915 DIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAGY 1736
+ +++ E I D+ +G YIFSDGIG+IS FA +VA KCG PS FQIRY GY
Sbjct: 504 SVGRHEVEVIPDVVCSLHGTNYIFSDGIGKISADFARRVAVKCGLQ-YTPSCFQIRYGGY 562
Query: 1735 KGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDS 1556
KGVVA+DP +S KLSLRNSM KY S N LDVL W+KY+PCYLNRQ++ LLSTLGVKD
Sbjct: 563 KGVVAVDP-YSSMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDD 621
Query: 1555 VFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLE 1376
VFE Q +A+ +D+ L D KA E L+ M GEN NIL +ML CGY P +EP+L MML+
Sbjct: 622 VFEQKQNEAVDQLDAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQ 681
Query: 1375 EFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYDDKYQGY 1196
FRASKLL+L+ R+RIF+ NGR +MGCLDE+RTL+YG+VF+Q T +++ Y++ +
Sbjct: 682 TFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTG-RRQFYEESHPFN 740
Query: 1195 --------LTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNEC 1040
+EG VVVAKNPCLHPGDIR+L AV P L HMVDC+VFPQ+G RPHPNEC
Sbjct: 741 DSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNEC 800
Query: 1039 SGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLG 860
SGSDLDGDIYFV WD L+PP+ +QPMDY P QLDH+VT++E++E+F N++VND+LG
Sbjct: 801 SGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLG 860
Query: 859 IIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPQELFPKEYPDFMEKD 680
IIAN H++FAD+EPDMA S C +LA+L SIAVDFPKTG+PAE+P +L PKEYPDFMEK
Sbjct: 861 IIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKP 920
Query: 679 DKKTYRSDRILGKLYRSVKG---VATLDYNIRLDNKKDIYDTELIVCGFEGYVDEALKYK 509
DK TY S++++GKL++ VK A+ N +D + YD ++IV GFE Y+DEA YK
Sbjct: 921 DKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDVARKSYDGDMIVNGFEDYIDEAFYYK 980
Query: 508 RMYDSGMYRLMKHYEANSEAEIISGNIQTLXXXXXXSKRKNGEIREESMKSVNSLMKEAR 329
YD+ + LM +Y +EAEI+SG I + +RK+ + +V SL KEAR
Sbjct: 981 SEYDNKLGNLMDYYGIKTEAEILSGGI--MKASKTFDRRKDA---DAIGVAVRSLRKEAR 1035
Query: 328 GWFERSKIATKNKYPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDILLEIKKK 149
WF+R + + KASAWYHV+YH Y +E + ISFPW ++D L++IKK
Sbjct: 1036 TWFKR-RSDIDDMLAKASAWYHVTYHHTYWGFYNE-GLKRDHFISFPWCIYDQLIQIKKA 1093
Query: 148 RLSRK 134
+ +K
Sbjct: 1094 KARKK 1098
>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 898 bits (2321), Expect = 0.0
Identities = 499/1026 (48%), Positives = 673/1026 (65%), Gaps = 19/1026 (1%)
Frame = -2
Query: 3166 AELKNMLKCTLHMCCPIAEYTFCVLHSTTEVLVDLETNSRKICMYLQDNSVEYKLELSYT 2987
A + +M TL+ C I+E F VL ST EV + +K +L S +YKL+LSY
Sbjct: 90 AYVDHMDGITLNFGCQISEDKFAVLGST-EVSIKFGIGLKKFFFFLSSGSADYKLQLSYE 148
Query: 2986 DIRYVIGDQLKDSENKIALLRLRHAPRVYYRIYDYFNRKLKQRRENVYEWVRTTDYTGSG 2807
+I V+ + + L++L APR+Y R+ + K+ ++ +WVRTTD+T S
Sbjct: 149 NIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENSCYSFFKETPDD--QWVRTTDFTPSW 206
Query: 2806 SIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILN--PPEG 2633
I SS + + V+ +E+F HY + E +I L+ F + K+ + N PPEG
Sbjct: 207 -IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEG 265
Query: 2632 CDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLEFNAENIVHK 2453
+P+ ++FK+++L+Q G I P L+ FF + QR +VA +++A KL + E +
Sbjct: 266 IAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKE-CCYD 324
Query: 2452 PFDWLGEKLKAAENSNENGDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHF 2273
P WL E+ + + L GL Y+ +V VTP ++YFC PE+ VSNRVLR++
Sbjct: 325 PVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNY 384
Query: 2272 AEHIENFLRVSFVDENRACLRSSDL--SWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKK 2099
+E I+NFLRVSFVDE L S++L +TGN T+IY+RIL L++G VIG+KK
Sbjct: 385 SEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR---TNIYERILSTLRKGFVIGDKK 441
Query: 2098 FEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTET 1919
FEFLA+SSSQLR++S+WMFAS ++ + IR WMG+F IKNVAK A+R+GQS SS ET
Sbjct: 442 FEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRET 501
Query: 1918 YDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAG 1739
+ +++ E I D+++ +G Y+FSDGIG+IS FA +VA KCG PSAFQIRY G
Sbjct: 502 LSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQ-YTPSAFQIRYGG 558
Query: 1738 YKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKD 1559
YKGVVA+DP +S KLSLR SM KY S NN LDVL W+KY+PCYLNRQ++ LLSTLGVKD
Sbjct: 559 YKGVVAVDP-YSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKD 617
Query: 1558 SVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMML 1379
V E Q++A+ +D+ L D KA E L+ M GEN NIL ML CGY P +EP+L MML
Sbjct: 618 DVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMML 677
Query: 1378 EEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQIT-----------HPSE 1232
+ FRASKLL+L+ R+RIF+ NGRA+MGCLDE+RTL+YG+VF+Q T HP
Sbjct: 678 QTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFN 737
Query: 1231 KKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPH 1052
+ + + ++G VVVAKNPCLHPGDIR+L AV P L HMVDC+VFPQ+G RPH
Sbjct: 738 NSRSTNCNF----ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPH 793
Query: 1051 PNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVN 872
PNECSGSDLDGDIYFV WD +IPP+ Q M+Y P QLDH VT++E++E+F N++VN
Sbjct: 794 PNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHNVTIEEVEEYFTNYIVN 853
Query: 871 DTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPQELFPKEYPDF 692
D+LGIIAN H++FAD+EPDMA S C +LAEL SIAVDFPKTG+PAE+P +L PKEYPDF
Sbjct: 854 DSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDF 913
Query: 691 MEK-DDKKTYRSDRILGKLYRSVKGVATLDYNIRL---DNKKDIYDTELIVCGFEGYVDE 524
M+K DK TY S+R++GKL+R VK A +I + D + YD +L V GFE Y+DE
Sbjct: 914 MDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDADLEVDGFEDYIDE 973
Query: 523 ALKYKRMYDSGMYRLMKHYEANSEAEIISGNIQTLXXXXXXSKRKNGEIREESMKSVNSL 344
A YK YD+ + LM +Y +EAEI+SG I + +RK+ E +V +L
Sbjct: 974 AFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI--MKASKTFDRRKDA---EAISVAVRAL 1028
Query: 343 MKEARGWFERSKIATKNKYPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDILL 164
KEAR WF+R + + PKASAWYHV+YHP Y ++ + ISFPW ++D L+
Sbjct: 1029 RKEARTWFKR-RNDIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRDHFISFPWCVYDQLI 1086
Query: 163 EIKKKR 146
+IKK++
Sbjct: 1087 QIKKEK 1092
>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
Length = 1115
Score = 898 bits (2320), Expect = 0.0
Identities = 504/1036 (48%), Positives = 676/1036 (65%), Gaps = 20/1036 (1%)
Frame = -2
Query: 3166 AELKNMLKCTLHMCCPIAEYTFCVLHSTTEVLVDLETNSRKICMYLQDNSVEYKLELSYT 2987
A + +M TL+ C I++ F VL ST EV + +K +L S +YKL+LSY
Sbjct: 90 AYVDHMDGITLNFGCQISDDKFAVLGST-EVSIKFGIGLKKFFFFLSSGSADYKLQLSYE 148
Query: 2986 DIRYVIGDQLKDSENKIALLRLRHAPRVYYRIYDYFNRKLKQRRENVYEWVRTTDYTGSG 2807
+I V+ + + L++L APR+Y R+ + K+ ++ +WVRTTD+ S
Sbjct: 149 NIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENSCYSFFKETPDD--QWVRTTDFAPSW 206
Query: 2806 SIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILN--PPEG 2633
I SS + + V+ +E+F HY + E +I L+ F + K+ + N PPEG
Sbjct: 207 -IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEG 265
Query: 2632 CDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLEFNAENIVHK 2453
+P+ ++FK+++L+Q G I P L+ FF + QR +VA +++A KL + E +
Sbjct: 266 IAIPYKILFKISSLVQHGCIPGPALNVNFFRLVDPQRRNVACIEQALEKLYYLKE-CCYD 324
Query: 2452 PFDWLGEKLKAAENSNENGDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHF 2273
P WL E+ + + L GL Y+ +V VTP ++YFC PE+ VSNRVLR++
Sbjct: 325 PVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNY 384
Query: 2272 AEHIENFLRVSFVDENRACLRSSDL--SWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKK 2099
+E I+NFLRVSFVDE L S+DL +TGN T+IY RIL LQ+G VIG+KK
Sbjct: 385 SEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR---TNIYVRILSTLQKGFVIGDKK 441
Query: 2098 FEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTET 1919
FEFLA+SSSQLR++S+WMFAS ++A IR WMG+F IKNVAK A+R+GQS SS ET
Sbjct: 442 FEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSKET 501
Query: 1918 YDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAG 1739
+ +++ E I D+++ +G Y+FSDGIG+IS FA +VA KCG PSAFQIRY G
Sbjct: 502 LSVLRHEIEIIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQ-YTPSAFQIRYGG 558
Query: 1738 YKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKD 1559
YKGVVA+DP +S KLSLR SM KY S NN LDVL W+KY+PC+LNRQ++ LLSTLGVKD
Sbjct: 559 YKGVVAVDP-YSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCFLNRQLVTLLSTLGVKD 617
Query: 1558 SVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMML 1379
V E Q++A+ +D+ L D KA E L+ M GEN NIL ML CGY P +EP+L MML
Sbjct: 618 DVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMML 677
Query: 1378 EEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQIT-----------HPSE 1232
+ FRASKLL+L+ R+RIF+ NGRA+MGCLDE+RTL+YG+VF+Q T HP
Sbjct: 678 QTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGSGHREFSEDLHPFN 737
Query: 1231 KKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPH 1052
+ + + ++G VVVAKNPCLHPGDIR+L AV P L HMVDC+VFPQ+G RPH
Sbjct: 738 NSRSTNCNF----ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPH 793
Query: 1051 PNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVN 872
PNECSGSDLDGDIYFV WD +IPP+ Q M+Y P QLDH+VT++E++E+F N++VN
Sbjct: 794 PNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHDVTIEEVEEYFTNYIVN 853
Query: 871 DTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPQELFPKEYPDF 692
D+LGIIAN H++FAD+EPDMA S C +LAEL SIAVDFPKTG+PAE+P +L PKEYPDF
Sbjct: 854 DSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDF 913
Query: 691 MEK-DDKKTYRSDRILGKLYRSVKGVATLDYNIRL---DNKKDIYDTELIVCGFEGYVDE 524
M+K DK TY S+R++GKLYR VK A + + D + YD +L V GFE Y+DE
Sbjct: 914 MDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDE 973
Query: 523 ALKYKRMYDSGMYRLMKHYEANSEAEIISGNIQTLXXXXXXSKRKNGEIREESMKSVNSL 344
A YK YD+ + LM +Y +EAEI+SG I + +RK+ E +V +L
Sbjct: 974 AFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI--MKTSKTFDRRKDA---EAISIAVRAL 1028
Query: 343 MKEARGWFERSKIATKNKYPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDILL 164
KEAR WF+R + + PKASAWYHV+YHP Y ++ + ISFPW ++D L+
Sbjct: 1029 RKEARTWFKR-RNDIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRDHFISFPWCVYDQLI 1086
Query: 163 EIKK-KRLSRKDSNMS 119
+IKK K L+R N+S
Sbjct: 1087 QIKKEKALNRPVLNLS 1102
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 896 bits (2315), Expect = 0.0
Identities = 493/1031 (47%), Positives = 660/1031 (64%), Gaps = 17/1031 (1%)
Frame = -2
Query: 3160 LKNMLKCTLHMCCPIAEYTFCVLHSTTEVLVDLETNSRKICMYLQDNSVEYKLELSYTDI 2981
L +M + TLH ++ FCVL V V RK +L S EYKLELS +I
Sbjct: 93 LHSMDRITLHFGYQMSNERFCVLWKAINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENI 152
Query: 2980 RYVIGDQLKDSENKIALLRLRHAPRVYYR---IYDYFNRKLKQRRENVYEWVRTTDYTGS 2810
+ + + K L++L AP++Y + YF K+ ++ +WVR D+T S
Sbjct: 153 WQIQLREPRGQNTKFLLIQLLDAPQIYEKDVSALSYF----KETPDD--QWVREIDFTPS 206
Query: 2809 GSIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILNPPEGC 2630
SI +SS E+ E F Y+++++ LE F+ N + I+ PP+G
Sbjct: 207 CSIGQSSALCLELPHGSQLPNFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGS 266
Query: 2629 DVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLEFNAENIVHKP 2450
++PF ++FK+N L+Q G +S PTLD FF ++ QR +++ ++ A KL + E ++P
Sbjct: 267 NLPFKILFKINTLVQNGCLSGPTLDTNFFRWVDPQRINISFIEHALEKLYY-LEECCYEP 325
Query: 2449 FDWLGEKLKAAENSNENGDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHFA 2270
WL E+ + + G L GL Y+ +V +TP ++YFC PE+ VSNRVLR++
Sbjct: 326 VRWLHEQYRTYISKQVAGSPAIS-LDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYP 384
Query: 2269 EHIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKKFEF 2090
E I+NFLRVSF+DEN + S+ +S N + T +Y+RIL +LQ GIVIG+KKF+F
Sbjct: 385 EDIDNFLRVSFLDENSEKIHSTVISPRMSNEGRR--TGVYRRILSILQNGIVIGDKKFDF 442
Query: 2089 LAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTETYDI 1910
LA SSSQLR++S WMFAS ++A IR MG+F I+NVAK A+R+GQS SSS ET +
Sbjct: 443 LAVSSSQLRDNSAWMFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKV 502
Query: 1909 QKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKG 1730
K++ E I DIE R+G Y+FSDGIG+IS A +VA KCG PSAFQIRY GYKG
Sbjct: 503 AKHEIEIIPDIETHRDGTTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKG 562
Query: 1729 VVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDSVF 1550
VVA+DPT +S KLSLR SM KY S N +LDVLSW+KYRPC+LNRQ+I LLSTLGVKD VF
Sbjct: 563 VVAVDPT-SSRKLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVF 621
Query: 1549 ETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEF 1370
E Q +A+ +D+ L+D +A E L+ M GEN NIL +MLMCGY P +EP+L MML+ F
Sbjct: 622 EKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTF 681
Query: 1369 RASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYDD------- 1211
RA+KLLEL+ + RIFV NGR++MGCLDETRTL+YGEVF+QI+ ++ D
Sbjct: 682 RAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSG 741
Query: 1210 KYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECSGS 1031
+ +EGKVVVAKNPCLHPGD+RIL AV P L HMVDC+VFPQ+G RPHP+ECSGS
Sbjct: 742 SHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGS 801
Query: 1030 DLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGIIA 851
DLDGDIYFV WDH LIPP+ PMDY P K LDH+V ++E++E+F N++ ND LGIIA
Sbjct: 802 DLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIA 861
Query: 850 NGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPQELFPKEYPDFMEKDDKK 671
N H +FAD+E D A C LA+L SIA++FPKTG+PAE+P L KEYPDFMEK +K
Sbjct: 862 NAHTVFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKP 921
Query: 670 TYRSDRILGKLYRSVKGVATLDYNIR---LDNKKDIYDTELIVCGFEGYVDEALKYKRMY 500
TY S ++GKL+R VK VA +Y++R D YD ++ V GFE YV +A YK Y
Sbjct: 922 TYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQY 981
Query: 499 DSGMYRLMKHYEANSEAEIISGNIQTLXXXXXXSKRKNGEIREESMKSVNSLMKEARGWF 320
D + LM +E+EI+SG+I + KRK+ E +V SL KEAR WF
Sbjct: 982 DFKLGSLMDCCGIRTESEILSGSIMKM--SKSFDKRKDA---EAIALAVRSLRKEARTWF 1036
Query: 319 ERSKIAT----KNKYPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDILLEIKK 152
+ T + Y ASAWYHV+YHP Y +E + +SFPW ++D L++IK+
Sbjct: 1037 NKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYNE-GMYHDHFLSFPWCVYDKLIQIKR 1095
Query: 151 KRLSRKDSNMS 119
++S + ++S
Sbjct: 1096 DKMSIRSLHLS 1106
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 895 bits (2313), Expect = 0.0
Identities = 484/1024 (47%), Positives = 660/1024 (64%), Gaps = 25/1024 (2%)
Frame = -2
Query: 3136 LHMCCPIAEYTFCVLHSTTEVLVDLETNSRKICMYLQDNSVEYKLELSYTDIRYVIGDQL 2957
LH C I+ F VL V V+ RKI L EY+LEL Y +I +
Sbjct: 104 LHFGCKISNEKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCP 163
Query: 2956 KDSENKIALLRLRHAPRVYYR------------IYDYFNRKLKQRRENVYEWVRTTDYTG 2813
+ K L++L APR++ + ++++F +WVRTTD+T
Sbjct: 164 RWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDD------QWVRTTDFTP 217
Query: 2812 SGSIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILNPPEG 2633
S I +S+ E+ + KE F +Y++SE LE ++ + + I+ PP+G
Sbjct: 218 SNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDG 277
Query: 2632 CDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRN--SVAKLKKAFTKLEFNAENIV 2459
+P+ ++FK+N L+Q G ++ P LD+ F+ + R S++ ++ A KL ++ +
Sbjct: 278 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKL-YHLKECC 336
Query: 2458 HKPFDWLGEKLKAAENSNENGDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLR 2279
++P WL ++ + S + L GL Y+++V VTPSR+YFC PEI VSNRVLR
Sbjct: 337 YEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLR 396
Query: 2278 HFAEHIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKK 2099
HF I+NFLR+SF+DE+ + S+DLS + + T IY RIL L+ GI+IG++K
Sbjct: 397 HFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 456
Query: 2098 FEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTET 1919
FEFLA+SSSQLRESS WMFAS ++A IR+WMGNF I+NVAK A+R+GQS SSS ET
Sbjct: 457 FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 516
Query: 1918 YDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAG 1739
+ ++ E I D+++E KY+FSDGIG++S FA +VA KCG PSAFQIRY G
Sbjct: 517 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 576
Query: 1738 YKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKD 1559
YKGVVA DPT +S KLSLR+SMRKY S LDVL+W+KY+PC+LNRQ+I LLSTLG+ D
Sbjct: 577 YKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWD 635
Query: 1558 SVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMML 1379
+FE Q +A+ +D+ L D KA E L+ M GEN NIL ++L+CGY P +EP+L MML
Sbjct: 636 EIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMML 695
Query: 1378 EEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPS------EKKKCY 1217
+ FRASKLLEL+ + RIF+ NGR++MGCLDETRTL YG+VF+QI+ E
Sbjct: 696 QTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFS 755
Query: 1216 DDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECS 1037
+ + V+G VVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G RPHPNECS
Sbjct: 756 SSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECS 815
Query: 1036 GSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGI 857
GSDLDGDIYFV WD LIPPQ PMDY QLDH+V +++++E+F N++VND+LGI
Sbjct: 816 GSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGI 875
Query: 856 IANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPQELFPKEYPDFMEKDD 677
IAN H +FAD+EP A+S CL+LAE SIAVDFPKTG+PAE+P L+ KEYPDFMEK D
Sbjct: 876 IANAHTVFADREPHKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPD 935
Query: 676 KKTYRSDRILGKLYRSVKGVATLDYNIRLDNK---KDIYDTELIVCGFEGYVDEALKYKR 506
K TY S ++GKL+R+VK +A IRL K + YD ++ V GFE ++D+A+ +K
Sbjct: 936 KPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKG 995
Query: 505 MYDSGMYRLMKHYEANSEAEIISGNIQTLXXXXXXSKRKNGEIREESMKSVNSLMKEARG 326
YD + LM +Y +EAEI++G+I + +KR++ E +V +L KEAR
Sbjct: 996 NYDYKLGNLMDYYGIKTEAEILTGSIMKM--SKSFTKRRDA---EAIGMAVRALRKEARA 1050
Query: 325 WF-ERSKIATK-NKYPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDILLEIKK 152
WF E+S T+ + Y KASAWYHV+YHPDY + + + +SFPW ++D L+EIKK
Sbjct: 1051 WFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNH-GMNRDHFLSFPWCVYDRLVEIKK 1109
Query: 151 KRLS 140
+ S
Sbjct: 1110 DKTS 1113
>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
tuberosum]
Length = 1115
Score = 894 bits (2311), Expect = 0.0
Identities = 496/1017 (48%), Positives = 668/1017 (65%), Gaps = 19/1017 (1%)
Frame = -2
Query: 3139 TLHMCCPIAEYTFCVLHSTTEVLVDLETNSRKICMYLQDNSVEYKLELSYTDIRYVIGDQ 2960
TL+ C I++ F VL ST EV + +K +L S +YKL+LSY +I V+ +
Sbjct: 99 TLNFGCQISDDKFAVLGST-EVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHR 157
Query: 2959 LKDSENKIALLRLRHAPRVYYRIYDYFNRKLKQRRENVYEWVRTTDYTGSGSIAKSSFFG 2780
+ L++L APR+Y R+ + K+ ++ +WVRTTD+ S I SS
Sbjct: 158 PYGQNAQFLLIQLFGAPRIYKRLENSCYSFFKETPDD--QWVRTTDFAPSW-IGLSSSLC 214
Query: 2779 WEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILN--PPEGCDVPFSVIF 2606
+ + V+ +E+F HY + E +I L+ F + K+ + N PPEG +P+ ++F
Sbjct: 215 LQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILF 274
Query: 2605 KLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLEFNAENIVHKPFDWLGEKL 2426
K+++L+Q G I P L+ FF + QR +VA +++A KL + E + P WL E+
Sbjct: 275 KISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKE-CCYDPVRWLTEQY 333
Query: 2425 KAAENSNENGDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHFAEHIENFLR 2246
+ + L GL Y+ +V VTP ++YFC PE+ VSNRVLR+++E I+NFLR
Sbjct: 334 DGYLKGRQPPKSPSINLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLR 393
Query: 2245 VSFVDENRACLRSSDL--SWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKKFEFLAYSSS 2072
VSFVDE L S+DL +TGN T+IY+RIL L++G VIG+KKFEFLA+SSS
Sbjct: 394 VSFVDEEWEKLYSTDLLPKASTGNGIR---TNIYERILSTLRKGFVIGDKKFEFLAFSSS 450
Query: 2071 QLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTETYDIQKNDFE 1892
QLR++S+WMFAS ++A IR WMG+F IKNVAK A+R+GQS SSTET + +++ E
Sbjct: 451 QLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSTETLSVLRHEIE 510
Query: 1891 FINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKGVVAIDP 1712
I D+++ +G Y+FSDGIG+IS FA +VA KCG PSAFQIRY GYKGVVA+DP
Sbjct: 511 VIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQ-HTPSAFQIRYGGYKGVVAVDP 567
Query: 1711 TMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDSVFETLQEQ 1532
+S KLSLR SM KY S NN LDVL W+KY+PCYLNRQ++ LLSTLGVKD V E Q++
Sbjct: 568 -YSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKE 626
Query: 1531 AITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEFRASKLL 1352
A+ +D+ L D KA E L+ M GEN NIL ML CGY P +EP+L MML+ FRASKLL
Sbjct: 627 AVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLL 686
Query: 1351 ELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQIT-----------HPSEKKKCYDDKY 1205
+L+ ++RIF+ NGR +MGCLDE+RTL+YG+VF+Q T HP + + +
Sbjct: 687 DLRTKSRIFIPNGRLMMGCLDESRTLEYGQVFVQFTGSGHREFSEDLHPFNNSRSTNCNF 746
Query: 1204 QGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECSGSDL 1025
++G VVVAKNPCLHPGDIR+L AV P L HMVDC+VFPQ+G RPHPNECSGSDL
Sbjct: 747 ----ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDL 802
Query: 1024 DGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGIIANG 845
DGDIYFV WD +IPP+ Q M+Y P QLDH+VT++E++E+F N++VND+LGIIAN
Sbjct: 803 DGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANA 862
Query: 844 HLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPQELFPKEYPDFMEK-DDKKT 668
H++FAD+EPDMA S C +LAEL SIAVDFPKTG+PAE+P +L PKEYPDFM+K DK T
Sbjct: 863 HVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPPQLRPKEYPDFMDKPPDKTT 922
Query: 667 YRSDRILGKLYRSVKGVATLDYNIRL---DNKKDIYDTELIVCGFEGYVDEALKYKRMYD 497
Y S+R++GKLYR VK A + + D + YD +L V GFE Y+DEA YK YD
Sbjct: 923 YISERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYD 982
Query: 496 SGMYRLMKHYEANSEAEIISGNIQTLXXXXXXSKRKNGEIREESMKSVNSLMKEARGWFE 317
+ + LM +Y +EAEI+SG I + +RK+ E +V +L KEAR WF+
Sbjct: 983 NKLGNLMDYYGIKTEAEILSGGI--MKTSKTFDRRKDA---EAISIAVRALRKEARTWFK 1037
Query: 316 RSKIATKNKYPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDILLEIKKKR 146
R + + PKASAWYHV+YHP Y ++ + ISFPW ++D L++IKK++
Sbjct: 1038 R-RNDIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRDHFISFPWCVYDQLIQIKKEK 1092
>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1133
Score = 893 bits (2308), Expect = 0.0
Identities = 498/1048 (47%), Positives = 674/1048 (64%), Gaps = 32/1048 (3%)
Frame = -2
Query: 3166 AELKNMLKCTLHMCCPIAEYTFCVLHSTTEVLVDLETNSRKICMYLQDNSVEYKLELSYT 2987
A L ++ TLH C I++ F L V VD R++ YL VEY+L+L Y
Sbjct: 92 ATLYSLQNVTLHFGCQISKEKFSFLWRVGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYE 151
Query: 2986 DIRYVIGDQLKDSENKIALLRLRHAPRVYYR------------IYDYFNRKLKQRRENVY 2843
++ + + + K L++L APRVY + +++YF K ++
Sbjct: 152 NVWQIELHRPRGQTAKYLLIQLLGAPRVYEKEVRISFDILENPLFNYF----KDTPDD-- 205
Query: 2842 EWVRTTDYTGSGSIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTK 2663
+WVR TD+T S I SS E+ V+ L+E FV+Y++SE+ LE F+ N
Sbjct: 206 QWVRATDFTESCCIGHSSALYLELPYGVDLPDLRENFVYYKESEERFILESGSSFSRNLD 265
Query: 2662 NLAILNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQR-NSVAKLKKAFTK 2486
+ I+ PP G ++PF +FK+N LLQ G +S PTLD F+ + QR +V + A K
Sbjct: 266 LVPIVGPPSGINLPFETVFKINMLLQNGCLSGPTLDVDFYRLVDPQRIRNVDCINYALEK 325
Query: 2485 LEFNAENIVHKPFDWLGEKLKAAENSNENGDTDDKPLAKGLFYINKVDVTPSRIYFCRPE 2306
L FN + ++P WL E+ + + L GL Y+ +V VTPS++YFC PE
Sbjct: 326 L-FNLKECPYEPAAWLNEQYRKYLTAPRPPKPPAIALDSGLVYVRRVQVTPSKVYFCGPE 384
Query: 2305 IQVSNRVLRHFAEHIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQ 2126
I VSNRVLR + ++I+ FLRVSFVDE L S+DLS T N + + T IY+RIL VL+
Sbjct: 385 INVSNRVLREYIDYIDYFLRVSFVDEELEKLFSTDLSPRTSNANEDRRTGIYRRILSVLR 444
Query: 2125 EGIVIGNKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMG 1946
GI IG++KFEFLA+SSSQLR++SLWMFA+ SAD+IR+W+G+F +I+NVAK A+R+G
Sbjct: 445 NGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDGHSADTIRQWIGDFRSIRNVAKYAARLG 504
Query: 1945 QSLSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIP 1766
QS SSTET + +++ E I+DIE+ER KY+FSDGIG+IS FA++VAKKCG +P
Sbjct: 505 QSFGSSTETLTVDESETEVISDIEIERGAVKYVFSDGIGKISSTFAKRVAKKCGLKDCVP 564
Query: 1765 SAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIII 1586
SAFQIRY GYKGVVA+DPT +S KLSLR SM KY S + LDVL+++K + CYLNRQ+I
Sbjct: 565 SAFQIRYCGYKGVVAVDPT-SSTKLSLRKSMWKYESELHKLDVLAYSKLQHCYLNRQLIT 623
Query: 1585 LLSTLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPR 1406
LLSTLGV D VFE Q +A+ +++ L D +A E L M +GE NIL ++L CGY P
Sbjct: 624 LLSTLGVGDRVFEKKQREAVQQLNAILNDPLRAREALDLMSAGETTNILKELLSCGYQPN 683
Query: 1405 SEPYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQ---ITHPS 1235
+EP+L MML+ FRASKL EL+ + RI + +GRA+MGCLDE RTL+YGEVF+Q ITH
Sbjct: 684 AEPFLSMMLQAFRASKLQELRTKTRISIPDGRAMMGCLDEMRTLEYGEVFVQFSGITH-- 741
Query: 1234 EKKKCYDDKY--------QGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIV 1079
+ ++D + Q Y+ V G+VVVAKNPCLHPGD+R+L AV P L HMVDC+V
Sbjct: 742 --RPFFEDSFMLGGTGSGQNYIVV-GRVVVAKNPCLHPGDVRVLRAVNVPALHHMVDCVV 798
Query: 1078 FPQQGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQ 899
FPQ+G RPHPNECSGSDLDGDIYFV WD LIP + ++PMDY P +LDH+V ++E+Q
Sbjct: 799 FPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQKQFEPMDYSPAPTTRLDHDVRIEEVQ 858
Query: 898 EHFVNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPQE 719
E+F N++VND+LGIIAN H FAD+EP A S C+ LA L SIAVDFPKTG+PA +PQE
Sbjct: 859 EYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPSCIELARLFSIAVDFPKTGVPAVIPQE 918
Query: 718 LFPKEYPDFMEKDDKKTYRSDRILGKLYRSVKGVATLDYNIRLDNKK---DIYDTELIVC 548
L+ KEYPDFMEK +K TY S ++GKL+R VK +A ++ K+ YD ++
Sbjct: 919 LYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDIAPNVGSLHFFTKEVASRSYDPDMEYD 978
Query: 547 GFEGYVDEALKYKRMYDSGMYRLMKHYEANSEAEIISGNIQTLXXXXXXSKRKNGEIREE 368
GFE Y+D+A YK YD + L+ +Y SEAEII G+I + +KR++ E
Sbjct: 979 GFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAEIIGGSIMRM--SKSFTKRRDA---ES 1033
Query: 367 SMKSVNSLMKEARGWFERS----KIATKNKYPKASAWYHVSYHPDYRHEKSETNTSMESL 200
+V +L KEAR WF A + Y KASAWY+V+YH Y +E + +
Sbjct: 1034 INMAVRALRKEARTWFNEKGSSLDSAADDVYAKASAWYYVTYHHSYWGCYNE-GMNRDHY 1092
Query: 199 ISFPWVLHDILLEIKKKRLS-RKDSNMS 119
+SFPW ++D L++IK+ + S R+ MS
Sbjct: 1093 LSFPWCVYDKLVQIKRSKASVRRSLQMS 1120
>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
vesca]
Length = 1119
Score = 893 bits (2307), Expect = 0.0
Identities = 486/1030 (47%), Positives = 659/1030 (63%), Gaps = 22/1030 (2%)
Frame = -2
Query: 3160 LKNMLKCTLHMCCPIAEYTFCVLHSTTEVLVDLETNSRKICMYLQDNSVEYKLELSYTDI 2981
L ++ LH+ C +A+ F VL T EV VD R + L Y+L+LSY +I
Sbjct: 92 LHSLRDLVLHVGCQVAKDKFSVLWGTAEVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENI 151
Query: 2980 RYVIGDQLKDSENKIALLRLRHAPRVY-----------YRIYDYFNRKLKQRRENVYEWV 2834
+ + K +++L PR+Y Y +YF + +WV
Sbjct: 152 WQIELHHQRGRSAKYLVIQLYGNPRIYQQEVCSSGGNGYEDMNYFR--------DPDDWV 203
Query: 2833 RTTDYTGSGSIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLA 2654
RTTD+T I +SS ++ +E F +Y+K++ LE F+ N +
Sbjct: 204 RTTDFTPGSCIGQSSSLCLVLTSDGELPDFEENFAYYKKTDGQFILENGSTFSRNRDLVP 263
Query: 2653 ILNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLEFN 2474
I+ P G D+P+ ++FK+N L+Q G +S PTLDN F+ + +R S ++ A KL N
Sbjct: 264 IVGSPAGIDLPYDILFKINLLVQQGCLSGPTLDNNFYRLVDPRRISRPCIEFALDKLS-N 322
Query: 2473 AENIVHKPFDWLGEKLKAAENSNENGDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVS 2294
+ ++P WL E+ + S + L GL Y+ +V +TPS++YF PE+ VS
Sbjct: 323 LKESCYEPAVWLNEEYRKYMMSKKPPKPALISLDSGLVYVRRVQITPSKVYFSGPEVNVS 382
Query: 2293 NRVLRHFAEHIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIV 2114
NR+LR ++ I+NFLRVSFVDE L S+DLS T R T+ IY R+L VL++GIV
Sbjct: 383 NRILRQYSSDIDNFLRVSFVDEEMEKLYSTDLSPRTSTRKTR----IYNRVLSVLRDGIV 438
Query: 2113 IGNKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLS 1934
+G KKFEFLA+SSSQLRE+SLWMFA T SAD+IR MG+F I+NVAK A+R+GQS
Sbjct: 439 VGKKKFEFLAFSSSQLRENSLWMFAPTDEDSADTIRAGMGDFRQIRNVAKYAARLGQSFG 498
Query: 1933 SSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQ 1754
SSTET + +N+ E I D+ + G KY+FSDGIG+IS FAE+VAKKCG+ PSAFQ
Sbjct: 499 SSTETLSVGRNEMEVIPDVTVNSCGIKYVFSDGIGKISADFAERVAKKCGYKAFTPSAFQ 558
Query: 1753 IRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLST 1574
IRY GYKGVVA+DPT +S KLSLR SM KY S N LDVL+ +KY+PC+LNRQ+I LLST
Sbjct: 559 IRYGGYKGVVAVDPT-SSMKLSLRKSMSKYESENTKLDVLACSKYQPCFLNRQLITLLST 617
Query: 1573 LGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPY 1394
L V+D VF Q A+ +++ L D KA E L M +GE+ N+L ++LMCGY P EP+
Sbjct: 618 LEVQDHVFLKKQRAAVQQLNAILTDPLKAEEALDLMSAGESTNVLKELLMCGYKPNVEPF 677
Query: 1393 LRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKK--- 1223
L MML+ FRASKLLEL+ + RIF+ +GRA+MGCLDETRTL+YG+VF+Q + ++
Sbjct: 678 LSMMLQTFRASKLLELRTKTRIFIPDGRAMMGCLDETRTLEYGQVFVQFSGKRRRQLFDD 737
Query: 1222 -CYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPN 1046
C +EGKVVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G RPHPN
Sbjct: 738 ICIHSSLDSCFIIEGKVVVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGHRPHPN 797
Query: 1045 ECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDT 866
ECSGSDLDGDIYFV WD LIPP+ QPMDY PP ++D +VT++E++E+FVN++VND+
Sbjct: 798 ECSGSDLDGDIYFVCWDPELIPPKQIQPMDYTPAPPIEMDQDVTIEEVEEYFVNYIVNDS 857
Query: 865 LGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPQELFPKEYPDFME 686
LGIIAN H +FAD + D A S CL+LA+L SIAVDFPKTG+PAE+P EL+ KEYPDFME
Sbjct: 858 LGIIANAHTVFADSKLDKAMSHPCLQLAKLFSIAVDFPKTGVPAEIPPELYAKEYPDFME 917
Query: 685 KDDKKTYRSDRILGKLYRSVKGVATLDYNIRLDNKK---DIYDTELIVCGFEGYVDEALK 515
K DK+TY S ++G+L+R VK +A D +I ++ YD ++ V GFE Y+++A
Sbjct: 918 KPDKRTYISHNVIGQLFREVKDIAPHDSSIASFTRQVATKCYDPDMEVDGFEDYLEDAFY 977
Query: 514 YKRMYDSGMYRLMKHYEANSEAEIISGNIQTLXXXXXXSKRKNGEIREESMKSVNSLMKE 335
+K YD + ++ +Y +EAEI+SG+I TL +KR++ + ++K SL KE
Sbjct: 978 HKGNYDYKLGNMLDYYGIKTEAEILSGSIMTL--SKSFTKRRDADAINVAVK---SLRKE 1032
Query: 334 ARGWFERSKI----ATKNKYPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDIL 167
AR WF + Y KASAWYHV+YHP+Y +E + ISFPW + D L
Sbjct: 1033 ARAWFNEKDTGIDSGDDDVYAKASAWYHVTYHPNYFGLYNE-GMNRAHFISFPWCVFDKL 1091
Query: 166 LEIKKKRLSR 137
IKK+++++
Sbjct: 1092 GHIKKEKVNQ 1101
>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
[Solanum lycopersicum]
Length = 1114
Score = 890 bits (2299), Expect = 0.0
Identities = 494/1024 (48%), Positives = 665/1024 (64%), Gaps = 17/1024 (1%)
Frame = -2
Query: 3139 TLHMCCPIAEYTFCVLHSTTEVLVDLETNSRKICMYLQDNSVEYKLELSYTDIRYVIGDQ 2960
TL+ C I++ F VL ST EV + +K +L S +YKL+LSY +I V+ +
Sbjct: 99 TLNFGCQISDDKFAVLGST-EVSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHR 157
Query: 2959 LKDSENKIALLRLRHAPRVYYRIYDYFNRKLKQRRENVYEWVRTTDYTGSGSIAKSSFFG 2780
+ L++L APR+Y R+ + K+ ++ +WVRTTD+ S I SS
Sbjct: 158 PYGQNAQFLLIQLFGAPRIYKRLENSCYSFFKETPDD--QWVRTTDFPPSW-IGLSSSLC 214
Query: 2779 WEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILN--PPEGCDVPFSVIF 2606
+ + V +E+F HY + E +I L+ F + K+ + N PPEG +P+ ++F
Sbjct: 215 LQFRRGVRLPNFEESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILF 274
Query: 2605 KLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLEFNAENIVHKPFDWLGEKL 2426
K+++L+Q G I P L+ FF + +R +VA ++ A KL + E + P WL E+
Sbjct: 275 KISSLVQHGCIPGPALNVYFFRLVDPRRRNVACIEHALEKLYYIKE-CCYDPVRWLTEQY 333
Query: 2425 KAAENSNENGDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHFAEHIENFLR 2246
+ + L GL Y+ +V VTP ++YFC PE+ VSNRVLR+++E I+NFLR
Sbjct: 334 DGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLR 393
Query: 2245 VSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKKFEFLAYSSSQL 2066
VSFVDE L S+DL S + T+IY+RIL L++G VIG+KKFEFLA+SSSQL
Sbjct: 394 VSFVDEEWEKLYSTDLLPKASTGSGVR-TNIYERILSTLRKGFVIGDKKFEFLAFSSSQL 452
Query: 2065 RESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTETYDIQKNDFEFI 1886
R++S+WMFAS ++A+ IR WMG+F IKNVAK A+R+GQS SS ET + +++ E I
Sbjct: 453 RDNSVWMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVI 512
Query: 1885 NDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTM 1706
D+++ +G Y+FSDGIG+IS FA +VA KCG PSAFQIRY GYKGVV +DP
Sbjct: 513 PDVKV--HGTSYVFSDGIGKISGDFAHRVASKCGLQ-YTPSAFQIRYGGYKGVVGVDPD- 568
Query: 1705 TSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDSVFETLQEQAI 1526
+S KLSLR SM KY S N LDVL W+KY+PCYLNRQ+I LLSTLGVKD V E Q++A+
Sbjct: 569 SSMKLSLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAV 628
Query: 1525 TSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEFRASKLLEL 1346
+D+ L D KA E L+ M GEN NIL ML CGY P +EP+L MML+ FRASKLL+L
Sbjct: 629 DQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDL 688
Query: 1345 KKRARIFVSNGRALMGCLDETRTLKYGEVFIQIT-----------HPSEKKKCYDDKYQG 1199
+ R+RIF+ NGR +MGCLDE+RTL+YG+VF+Q T HP + + +
Sbjct: 689 RTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNF-- 746
Query: 1198 YLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECSGSDLDG 1019
++G VVVAKNPCLHPGDIR+L AV L HMVDC+VFPQ+G RPHPNECSGSDLDG
Sbjct: 747 --ILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDG 804
Query: 1018 DIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGIIANGHL 839
DIYFV WD +IPP+ QPM+Y P QLDH+VT++E++E+F N++VND+LGIIAN H+
Sbjct: 805 DIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHV 864
Query: 838 IFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPQELFPKEYPDFMEKDDKKTYRS 659
+FAD+EPDMA S C +LAEL SIAVDFPKTG+PAE+P +L PKEYPDFM+K DK +Y S
Sbjct: 865 VFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTSYIS 924
Query: 658 DRILGKLYRSVKGVATLDYNIRL---DNKKDIYDTELIVCGFEGYVDEALKYKRMYDSGM 488
+R++GKL+R VK A +I D + YD ++ V GFE Y+DEA YK YD+ +
Sbjct: 925 ERVIGKLFRKVKDKAPQASSIATFTRDVARRSYDADMEVDGFEDYIDEAFDYKTEYDNKL 984
Query: 487 YRLMKHYEANSEAEIISGNIQTLXXXXXXSKRKNGEIREESMKSVNSLMKEARGWFERSK 308
LM +Y +EAEI+SG I + +RK+ E +V +L KEAR WF+R +
Sbjct: 985 GNLMDYYGIKTEAEILSGGI--MKASKTFDRRKDA---EAISVAVRALRKEARAWFKR-R 1038
Query: 307 IATKNKYPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDILLEIKK-KRLSRKD 131
+ PKASAWYHV+YHP Y ++ ISFPW ++D L++IKK K +R
Sbjct: 1039 NDIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRAHFISFPWCVYDQLIQIKKDKARNRPV 1097
Query: 130 SNMS 119
N+S
Sbjct: 1098 LNLS 1101
>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
max] gi|571439308|ref|XP_006574822.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
max] gi|571439310|ref|XP_006574823.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
max]
Length = 1125
Score = 889 bits (2298), Expect = 0.0
Identities = 487/1033 (47%), Positives = 672/1033 (65%), Gaps = 20/1033 (1%)
Frame = -2
Query: 3124 CPIAEYTFCVLHSTTEVLVDLETNSRKICMYLQDNSVEYKLELSYTDIRYVIGDQLKDSE 2945
C I++ F VL +V+V+ + RK+ N+V+YKLELSY +I + + ++
Sbjct: 109 CQISKGRFSVLWKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNET 168
Query: 2944 NKIALLRLRHAPRVYYRIYDYFNRKLKQRRENVY------EWVRTTDYTGSGSIAKSSFF 2783
+ L++L APRV+ N + +W+R D+T I +SS
Sbjct: 169 TRYLLIQLLGAPRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAI 228
Query: 2782 GWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILNPPEGCDVPFSVIFK 2603
E+ +E F +Y +SE+ L+ F+ N + I+ PP G + + ++FK
Sbjct: 229 CLELPNGRQLPNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFK 288
Query: 2602 LNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLEFNAENIVHKPFDWLGEKLK 2423
+N+L+Q ++ P LD F+ + +R ++ A K+ ++ E ++P WL ++ K
Sbjct: 289 VNSLVQHACLAGPALDGDFYRLVDPRRMPREFIEYALEKIYYSKE-FCYEPTKWLTDQYK 347
Query: 2422 AAENSNENGDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHFAEHIENFLRV 2243
S + + L GL Y+ +V +TP ++YFC PE+ VSNRVLRHF EHI+NFLRV
Sbjct: 348 TYLESKNHPRSPAISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRV 407
Query: 2242 SFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKKFEFLAYSSSQLR 2063
SFVDE L S+DLS +RS K T+IY RIL +L+ GIV+G+KKFEFLA+SSSQLR
Sbjct: 408 SFVDEELDKLFSTDLS----SRSQNKKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLR 463
Query: 2062 ESSLWMFASTGI-VSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTETYDIQKNDFEFI 1886
E+SLWMFA T +A IRKWMGNF I+NVAK A+R+GQS SSTET + +++ E I
Sbjct: 464 ENSLWMFAPTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEII 523
Query: 1885 NDIE-LERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKGVVAIDPT 1709
D++ L +G +Y+FSDGIG+IS+ FA++VAKKCG+D PSAFQIRY GYKGVVA+DP
Sbjct: 524 PDVKKLTYDGNEYVFSDGIGKISLEFAQKVAKKCGYDCT-PSAFQIRYGGYKGVVAVDPK 582
Query: 1708 MTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDSVFETLQEQA 1529
+ +KLSLR SMRKY S N LDVL+ +K++PCYLNRQ+I LLSTLG+KD VFE Q +
Sbjct: 583 -SCYKLSLRKSMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRET 641
Query: 1528 ITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEFRASKLLE 1349
+ +++ L D KA EVL M +GE N+L +ML+CGY P EP+L MML+ FRASKLLE
Sbjct: 642 VNQLNTILTDSLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLE 701
Query: 1348 LKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYD----DKYQGYLTVEG 1181
L+ ++RIF+ GRA+MGCLDETRTL+YG+VF+Q ++ + D D + Y+ V+G
Sbjct: 702 LRLKSRIFIPKGRAMMGCLDETRTLEYGQVFVQFSNNRLQNLSDDFFSYDLPKNYM-VKG 760
Query: 1180 KVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFVS 1001
KVVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+GPRPHPNECSGSDLDGDIYFV
Sbjct: 761 KVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVC 820
Query: 1000 WDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQE 821
WDH LIP + PMDY + +LDH+V ++E++E+F N++VND+LGIIAN H +FAD+E
Sbjct: 821 WDHELIPSRPIDPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKE 880
Query: 820 PDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPQELFPKEYPDFMEKDDKKTYRSDRILGK 641
A S +C++LA L S AVDFPKTG+PA +P EL KEYPDFMEK DK TY+S ++GK
Sbjct: 881 HLKAMSDQCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGK 940
Query: 640 LYRSVKGVATLDYNIRLDNK---KDIYDTELIVCGFEGYVDEALKYKRMYDSGMYRLMKH 470
L+R VK ++T +I K +D YD E+ V GF YVD+A +K YD + LM +
Sbjct: 941 LFREVKEISTSAGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDY 1000
Query: 469 YEANSEAEIISGNIQTLXXXXXXSKRKNGEIREESMKSVNSLMKEARGWFERSK-----I 305
Y +EAEI+ GNI + +KR++ E +V SL KEAR WF +
Sbjct: 1001 YGIKTEAEILGGNIMKM--SKSFNKRRDAEAIN---MAVRSLRKEARAWFNENSSGDVDS 1055
Query: 304 ATKNKYPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDILLEIKKKRLSRKDSN 125
+ + Y KASAWYHV+YHP Y +E + + +SF W ++ +L++IKK++LS + S+
Sbjct: 1056 GSSDVYAKASAWYHVTYHPSYWGCYNE-GMNRDHYLSFSWCVYPLLVQIKKEKLSIRRSS 1114
Query: 124 MS**Y*FLSSQLS 86
+ Y F +LS
Sbjct: 1115 LE--YSFSGLRLS 1125
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 889 bits (2296), Expect = 0.0
Identities = 482/1024 (47%), Positives = 659/1024 (64%), Gaps = 13/1024 (1%)
Frame = -2
Query: 3160 LKNMLKCTLHMCCPIAEYTFCVLHSTTEVLVDLETNSRKICMYLQDNSVEYKLELSYTDI 2981
L M + T++ C ++E F VL V ++ T RK+ L S +YKLEL Y +I
Sbjct: 93 LHTMERVTVNFGCQVSEEKFYVLWKADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENI 152
Query: 2980 RYVIGDQLKDSENKIALLRLRHAPRVYYRIYDYFNRKLKQRRENVY------EWVRTTDY 2819
+ +K L++L APR+Y + N + +WVRTTD+
Sbjct: 153 WQIELRCPHSQTSKHLLIQLFGAPRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDF 212
Query: 2818 TGSGSIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILNPP 2639
T S I +SS E+ + +E F +Y+++E + LE ++ N + I+ P
Sbjct: 213 TRSNCIGQSSVLWLELPHNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPS 272
Query: 2638 EGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLEFNAENIV 2459
D+PF ++FK+N L+Q G I P LD+ F+ + R + A KL + E
Sbjct: 273 RVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRE-CC 331
Query: 2458 HKPFDWLGEKLKAAENSNENGDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLR 2279
++P WL E+ K S + + L +GL Y+ +V +TPSR+YFC PEI VSNRVLR
Sbjct: 332 YEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLR 391
Query: 2278 HFAEHIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKK 2099
F I+NFLR+SFVDE + S+++ ++ + T IY+RIL L+ GIVIGNK+
Sbjct: 392 QFHNDIDNFLRISFVDEELEKIHSTNV------QARGRRTGIYKRILSTLRNGIVIGNKR 445
Query: 2098 FEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTET 1919
FEFLA+SSSQLRE+S WMFAS ++A IR WMGNF I+NVAK A+R+GQS SSSTET
Sbjct: 446 FEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTET 505
Query: 1918 YDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAG 1739
+ K++ I DIE+ ++G KY+FSDGIG+IS FA++VA KC G PSAFQIR G
Sbjct: 506 LSVSKDEINLIPDIEIMKDGIKYVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGG 565
Query: 1738 YKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKD 1559
+KGVVAIDPT +S KLSLR SM KY S N LDVL+W+KY+PC+LNRQ+I LLSTLGV D
Sbjct: 566 FKGVVAIDPT-SSWKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPD 624
Query: 1558 SVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMML 1379
FE Q + + +++ L D +A E L+ M GEN NIL +ML+CGY P +EP+L MML
Sbjct: 625 RAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMML 684
Query: 1378 EEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYDDKYQG 1199
E FRASKLLEL+ +ARIFV GR++MGCLDETRTL YG+VF+Q + +++
Sbjct: 685 ETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFSGSRSERR-------- 736
Query: 1198 YLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECSGSDLDG 1019
V+GKV+VAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G RPHPNECSGSDLDG
Sbjct: 737 -FIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDG 795
Query: 1018 DIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGIIANGHL 839
D+YFV WD LIP + PMDY +LDHEVT++EI+E+F N++VND+LGII+N H
Sbjct: 796 DVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHT 855
Query: 838 IFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPQELFPKEYPDFMEKDDKKTYRS 659
FAD+EPD A S CL LA+L SIAVDFPKTG+PAE+PQEL KEYPDFMEK DK +Y+S
Sbjct: 856 AFADREPDKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQS 915
Query: 658 DRILGKLYRSVKGVATLDYNIRL---DNKKDIYDTELIVCGFEGYVDEALKYKRMYDSGM 488
++GKL+R VK +A + +I+ + + YD ++ V GFE Y+D+A +K YD +
Sbjct: 916 HNVIGKLFREVKNLAPNECSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKL 975
Query: 487 YRLMKHYEANSEAEIISGNIQTLXXXXXXSKRKNGEIREESMKSVNSLMKEARGWFER-- 314
LM +Y +EAEI+ G I + +K+++ E +V SL KEAR WF
Sbjct: 976 GNLMDYYGVKTEAEILGGGIMKM--SRSFTKKRDA---EAISMAVRSLRKEARSWFNEKG 1030
Query: 313 SKIATK--NKYPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDILLEIKKKRLS 140
S++ + + Y KASAWY+V+YHP Y + +E + + +SFPW ++D L++IKK++ +
Sbjct: 1031 SELDEEIDDAYAKASAWYYVTYHPSYWGQYNE-GMNRDHFLSFPWCVYDKLIQIKKEKAA 1089
Query: 139 RKDS 128
+++
Sbjct: 1090 VREA 1093
>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
arietinum]
Length = 1126
Score = 884 bits (2284), Expect = 0.0
Identities = 483/1023 (47%), Positives = 670/1023 (65%), Gaps = 18/1023 (1%)
Frame = -2
Query: 3160 LKNMLKCTLHMCCPIAEYTFCVLHSTTEVLVDLETNSRKICMYLQDNSVEYKLELSYTDI 2981
L+++ TL+ C I++ F +L +V VDL RK + ++ ++K +LSY +I
Sbjct: 99 LESLDDVTLYFGCQISKERFSILWRKRDVSVDLSAGMRKWRFCMCHDNKKFKFDLSYENI 158
Query: 2980 RYVIGDQLKDSENKIALLRLRHAPRVYY---------RIY-DYFNRKLKQRRENVYEWVR 2831
+ Q K L++L APR++ +Y D K+ ++ +W+R
Sbjct: 159 WKIEQYQPWGKTAKYLLIQLIGAPRIFELYVPTSTSTNVYEDPLKNYFKESPDD--QWIR 216
Query: 2830 TTDYTGSGSIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAI 2651
D+T I +SS E+ + ++E FVHY+++E LE F+ N + I
Sbjct: 217 AVDFTPFNCIGQSSAICLELPCDRDFPNIREYFVHYQENEGQYTLESGSPFSHNLDVVPI 276
Query: 2650 LNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLEFNA 2471
+ PP+G +PF ++FK+N+L+Q G +S LDN F+ + R +V ++ A K+ ++
Sbjct: 277 VAPPQGIYIPFDILFKVNSLVQHGCLSGSELDNAFYCLVDPLRINVDFIEHALEKMYYS- 335
Query: 2470 ENIVHKPFDWLGEKLKAAENSNENGDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSN 2291
++ ++P WL ++ + NSN + L GL Y+ +V +TP ++YFC PEI VSN
Sbjct: 336 KDFCYEPARWLKDQYRMYLNSNYPLQSPSISLDNGLVYVRRVQITPCKVYFCGPEINVSN 395
Query: 2290 RVLRHFAEHIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVI 2111
RV+RHF EHI+NFLRVSFVDE L S+DLS S T++Y RIL +L+ GIVI
Sbjct: 396 RVVRHFHEHIDNFLRVSFVDEELDKLYSTDLS---SRISVGVRTEVYNRILSILRNGIVI 452
Query: 2110 GNKKFEFLAYSSSQLRESSLWMFASTGI-VSADSIRKWMGNFWAIKNVAKCASRMGQSLS 1934
G+KKFEFLA+SSSQLRE+SLWMFA T ++A IR WMG+F I+NVAK A+R+GQS
Sbjct: 453 GDKKFEFLAFSSSQLRENSLWMFAPTATGLTAQFIRAWMGDFSQIRNVAKYAARLGQSFG 512
Query: 1933 SSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQ 1754
SSTET + +N+ E I D +++ + +Y+FSDGIG+IS+ FA +VAKKCG+D PSAFQ
Sbjct: 513 SSTETLSVNRNEIEIIPDAQVKHDTIEYVFSDGIGKISLEFARRVAKKCGYDST-PSAFQ 571
Query: 1753 IRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLST 1574
IRY GYKGVVA+DPT +S KLSLR SM KY S N LDVL+ +KY+PCYLNRQ+I LLST
Sbjct: 572 IRYGGYKGVVAVDPT-SSVKLSLRKSMYKYDSDNTKLDVLACSKYQPCYLNRQLITLLST 630
Query: 1573 LGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPY 1394
L V+DSVFE Q++A+ +++ L + KA EVL M +GE NIL +ML CGY P EP+
Sbjct: 631 LKVEDSVFEKKQKEAVNQLNTILTNSLKAQEVLDLMSTGEITNILKEMLFCGYKPNVEPF 690
Query: 1393 LRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYD 1214
L MML+ FRASKLLEL+++ RIF+ GRA+MG LDETRTL+YGEVF+Q ++ Y
Sbjct: 691 LSMMLQTFRASKLLELRQKTRIFIPKGRAMMGVLDETRTLEYGEVFVQYSNNRISSLSYG 750
Query: 1213 DKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECSG 1034
L V GKVVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G RPHPNECSG
Sbjct: 751 SANS--LVVTGKVVVAKNPCLHPGDVRVLKAVDVPALHHMVDCVVFPQKGHRPHPNECSG 808
Query: 1033 SDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGII 854
SDLDGDIYFV WD LIPP+ +PM+Y S P L H+V ++E++E+F N+++ND+LGII
Sbjct: 809 SDLDGDIYFVCWDPELIPPETTEPMEYASVQPIVLYHDVEIEEVEEYFTNYILNDSLGII 868
Query: 853 ANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPQELFPKEYPDFMEKDDK 674
AN H++FAD+EP AK+ C+ LA+L SIAVDFPKTGIPA +P LF KEYPDFMEK DK
Sbjct: 869 ANAHIVFADKEPAKAKAEPCIELAKLFSIAVDFPKTGIPAVIPPHLFAKEYPDFMEKPDK 928
Query: 673 KTYRSDRILGKLYRSVKGVATLDYNI---RLDNKKDIYDTELIVCGFEGYVDEALKYKRM 503
TY+S+ ++GKL+R ++G+ + D +I L+ K YD ++ GF YVD+A +K
Sbjct: 929 TTYKSNNVIGKLFREIQGIPSRDGSITSFTLEVAKKSYDPDMEFDGFMDYVDDAFYHKTN 988
Query: 502 YDSGMYRLMKHYEANSEAEIISGNIQTLXXXXXXSKRKNGEIREESMKSVNSLMKEARGW 323
YD + LM +Y +E+EI+SGNI + +KR++G+ +V SL KEAR W
Sbjct: 989 YDYKLGNLMDYYGIKNESEILSGNIMRM--SKSFNKRRDGDAIN---MAVRSLRKEARSW 1043
Query: 322 FERSKI----ATKNKYPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDILLEIK 155
F + + Y KASAWY+V+YH Y +E + +SFPW ++ +L++IK
Sbjct: 1044 FNDDATGVDSGSVDAYAKASAWYYVTYHHSYWGSYNE-GMKRDHFLSFPWCVYHLLVQIK 1102
Query: 154 KKR 146
K++
Sbjct: 1103 KEK 1105
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 882 bits (2278), Expect = 0.0
Identities = 481/1024 (46%), Positives = 657/1024 (64%), Gaps = 13/1024 (1%)
Frame = -2
Query: 3160 LKNMLKCTLHMCCPIAEYTFCVLHSTTEVLVDLETNSRKICMYLQDNSVEYKLELSYTDI 2981
L M + T++ C ++E F VL V ++ T RK+ L S +YKLEL Y +I
Sbjct: 93 LHTMERVTVNFDCHVSEEKFYVLWKADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENI 152
Query: 2980 RYVIGDQLKDSENKIALLRLRHAPRVYYRIYDYFNRKLKQRRENVY------EWVRTTDY 2819
+ +K L++L APR+Y + N + +WVRTTD+
Sbjct: 153 WQIELRCPHSQTSKHLLIQLFGAPRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDF 212
Query: 2818 TGSGSIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILNPP 2639
T S I +SS E+ + +E F +Y+++E + LE ++ N + I+ P
Sbjct: 213 TRSNCIGQSSVLCLELPHNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPS 272
Query: 2638 EGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLEFNAENIV 2459
D+PF ++FK+N L+Q G I P LD+ F+ + R + A KL + E
Sbjct: 273 RVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRE-CC 331
Query: 2458 HKPFDWLGEKLKAAENSNENGDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLR 2279
++P WL E+ K S + + L +GL Y+ +V +TPSR+YFC PEI VSNRVLR
Sbjct: 332 YEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLR 391
Query: 2278 HFAEHIENFLRVSFVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKK 2099
F I+NFLR+SFVDE + S+++ ++ + T IY+RIL L+ GIVIGNK+
Sbjct: 392 QFHNDIDNFLRISFVDEELEKIHSTNV------QARGRRTGIYKRILSTLRNGIVIGNKR 445
Query: 2098 FEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTET 1919
FEFLA+SSSQLRE+S WMFAS ++A IR WMGNF I+NVAK A+R+GQS SSSTET
Sbjct: 446 FEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTET 505
Query: 1918 YDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAG 1739
+ K++ I DIE+ ++G KY+F DGIG+IS FA++VA KC G PSAFQIR G
Sbjct: 506 LSVSKDEINLIPDIEIMKDGIKYVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGG 565
Query: 1738 YKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKD 1559
+KGVVAIDPT +S KLSLR SM KY S N LDVL+W+KY+PC+LNRQ+I LLSTLGV D
Sbjct: 566 FKGVVAIDPT-SSWKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPD 624
Query: 1558 SVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMML 1379
FE Q + + +++ L D +A E L+ M GEN NIL +ML+CGY P +EP+L MML
Sbjct: 625 YAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMML 684
Query: 1378 EEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYDDKYQG 1199
E FRASKLLEL+ +ARIFV GR++MGCLDETRTL YG+VF+Q + +++
Sbjct: 685 ETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFSGSRSERR-------- 736
Query: 1198 YLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECSGSDLDG 1019
V+GKV+VAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G RPHPNECSGSDLDG
Sbjct: 737 -FIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDG 795
Query: 1018 DIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGIIANGHL 839
D+YFV WD LIP + PMDY +LDHEVT++EI+E+F N++VND+LGII+N H
Sbjct: 796 DVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHT 855
Query: 838 IFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPQELFPKEYPDFMEKDDKKTYRS 659
FAD+EP A S CL LA+L SIAVDFPKTG+PAE+PQEL KE+PDFMEK DK +Y+S
Sbjct: 856 AFADREPGKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQS 915
Query: 658 DRILGKLYRSVKGVATLDYNIRL---DNKKDIYDTELIVCGFEGYVDEALKYKRMYDSGM 488
++GKL+R VK +A + +I+L + K YD ++ V GF Y+D+A YK YD +
Sbjct: 916 YNVIGKLFREVKNLAPNECSIKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKL 975
Query: 487 YRLMKHYEANSEAEIISGNIQTLXXXXXXSKRKNGEIREESMKSVNSLMKEARGWFER-- 314
LM +Y +EAEI+SG I + +K+++ E +V SL KEAR WF
Sbjct: 976 GNLMDYYGVKTEAEILSGGIMKM--SRSFTKKRDA---ESISMAVRSLRKEARSWFNEKG 1030
Query: 313 SKIATK--NKYPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDILLEIKKKRLS 140
S++ + + Y KASAWY+V+YH Y + +E + + +SFPW ++D L++IKK++ +
Sbjct: 1031 SELDEEIDDAYAKASAWYYVTYHHSYWGQYNE-GMNRDHFLSFPWCVYDKLIQIKKEKAA 1089
Query: 139 RKDS 128
+++
Sbjct: 1090 LREA 1093
>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1065
Score = 880 bits (2274), Expect = 0.0
Identities = 487/994 (48%), Positives = 656/994 (65%), Gaps = 19/994 (1%)
Frame = -2
Query: 3166 AELKNMLKCTLHMCCPIAEYTFCVLHSTTEVLVDLETNSRKICMYLQDNSVEYKLELSYT 2987
A + +M TL+ C I++ F VL ST EV + +KI +L S +YKL+LSY
Sbjct: 89 AYVDHMDGITLNFGCQISDDKFAVLGST-EVSIKFGIGLKKIYFFLSRGSADYKLQLSYE 147
Query: 2986 DIRYVIGDQLKDSENKIALLRLRHAPRVYYRIYDYFNRKLKQRRENVYEWVRTTDYTGSG 2807
+I V+ + + L++L APR+Y R+ + K+ ++ +WVRTTD+ S
Sbjct: 148 NIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENSCYSFFKETPDD--QWVRTTDFAPSW 205
Query: 2806 SIAKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILN--PPEG 2633
I SS + + V+ +E+F HY + E +I L+ F + K+ + N PPEG
Sbjct: 206 -IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQPPEG 264
Query: 2632 CDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLEFNAENIVHK 2453
+P+ ++FK+++L+Q G I P+L+ FF + QR +VA +++A KL + E +
Sbjct: 265 IAIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDPQRRNVACIEQALEKLYYLKE-CCYD 323
Query: 2452 PFDWLGEKLKAAENSNENGDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHF 2273
P WL E+ + + L GL Y+ +V VTP ++YFC PE+ VSNRVLR++
Sbjct: 324 PVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNY 383
Query: 2272 AEHIENFLRVSFVDENRACLRSSDL--SWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKK 2099
+E I+NFLRVSFVDE L S++L +TGN T+IY+RIL +Q+G VIG+KK
Sbjct: 384 SEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR---TNIYERILSTMQKGFVIGDKK 440
Query: 2098 FEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTET 1919
FEFLA+SSSQLR++S+WMFAS ++A+ IR WMG+F IKNVAK A+R+GQS SS ET
Sbjct: 441 FEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKET 500
Query: 1918 YDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAG 1739
+ +++ E I D+++ +G Y+FSDGIG+IS FA +VA KCG PSAFQIRY G
Sbjct: 501 LSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQ-YTPSAFQIRYGG 557
Query: 1738 YKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKD 1559
YKGVVA+DP +S KLSLR SM KY S NN LDVL W+KY+PCYLNRQ+I LLSTLGVKD
Sbjct: 558 YKGVVAVDP-YSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLITLLSTLGVKD 616
Query: 1558 SVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMML 1379
+ E Q++A+ +D+ L D KA E L+ M GEN NIL ML CGY P +EP+L MML
Sbjct: 617 DILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMML 676
Query: 1378 EEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQIT-----------HPSE 1232
+ FRASKLL+L+ ++RIF+ NGRA+MGCLDE+RTL+YG+VF+Q T HP
Sbjct: 677 QTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFN 736
Query: 1231 KKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPH 1052
+ + + ++G VVVAKNPCLHPGDIR+L AV P L HMVDC+VFPQ+G RPH
Sbjct: 737 NSRSTNCNF----ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPH 792
Query: 1051 PNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVN 872
PNECSGSDLDGDIYFV WD +IPP+ QPM+Y P QLDH+VT++E++E+F N++VN
Sbjct: 793 PNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVN 852
Query: 871 DTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPQELFPKEYPDF 692
D+LGII+N H++FAD+EPDMA S C +LAEL SIAVDFPKTG+PAE+P + PKEYPDF
Sbjct: 853 DSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPSQWRPKEYPDF 912
Query: 691 MEK-DDKKTYRSDRILGKLYRSVKGVATLDYNIRL---DNKKDIYDTELIVCGFEGYVDE 524
M+K DK TY S+R++GKLYR VK A + + D + YD +L V GFE Y+DE
Sbjct: 913 MDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDE 972
Query: 523 ALKYKRMYDSGMYRLMKHYEANSEAEIISGNIQTLXXXXXXSKRKNGEIREESMKSVNSL 344
A YK YD+ + LM +Y +EAEI+SG I + +RK+ E +V +L
Sbjct: 973 AFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI--MKTSKTFDRRKDA---EAISIAVRAL 1027
Query: 343 MKEARGWFERSKIATKNKYPKASAWYHVSYHPDY 242
KEAR WF+R + + PKASAWYHV+YHP Y
Sbjct: 1028 RKEARTWFKR-RNDIDDMLPKASAWYHVTYHPTY 1060
>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
gi|548853371|gb|ERN11375.1| hypothetical protein
AMTR_s00176p00039530 [Amborella trichopoda]
Length = 1210
Score = 880 bits (2273), Expect = 0.0
Identities = 475/1027 (46%), Positives = 663/1027 (64%), Gaps = 27/1027 (2%)
Frame = -2
Query: 3118 IAEYTFCVLHSTTEVLVDLETNSRKICMYLQDNSVEYKLELSYTDIRYVIGDQLKDSENK 2939
I+E +F +L S T V V+ +KI YL V+YKL+L Y +I + + +
Sbjct: 184 ISEESFAILWSNTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEGTR 243
Query: 2938 IALLRLRHAPRVYYRIYDYFNRKLKQRRENVY------EWVRTTDYTGSGSIAKSSFFGW 2777
+L+++ APR++ + + + N Y +WVR+ D+T S SI +SS
Sbjct: 244 YLVLQMQGAPRIFQKPLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCL 303
Query: 2776 EISKLVNTTFLKETFVHYRKSEQDIALEFCKQFTPNTKNLAILNPPEGCDVPFSVIFKLN 2597
+ ++E F +Y++ L+ F+ + + I++PP+ +P+ ++F++N
Sbjct: 304 ALPNGTRIPNIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKLPYKILFRVN 363
Query: 2596 ALLQCGRISWPTLDNKFFDFLHSQRNS-VAKLKKAFTKLEFNAENIVHKPFDWLGEKLKA 2420
+L+Q G + PTLD +F++ L+ + V + + ++L N +P WL E+ K
Sbjct: 364 SLVQNGFLVGPTLDTEFYNLLNGLPSPFVERSLEDISRLT----NCCLEPAKWLQEQYKK 419
Query: 2419 AENSNENGDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHFAEHIENFLRVS 2240
N L GL Y+++V VTPS++YF PE+ VSNRVLR F+ +I+NFLR+S
Sbjct: 420 YRNLPRRPSPAAISLEPGLVYVHRVQVTPSKVYFYGPEVNVSNRVLRQFSNYIDNFLRIS 479
Query: 2239 FVDENRACLRSSDLSWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKKFEFLAYSSSQLRE 2060
F+DE+ +RS+DLS + + +K T +Y R+L L+ GIVIG+KKFEFLA+SSSQLR+
Sbjct: 480 FIDEDFGSIRSTDLSKRMASGAEEKHTTVYGRVLSTLKNGIVIGDKKFEFLAFSSSQLRD 539
Query: 2059 SSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTETYDIQKNDFEFIND 1880
+S WMF+ ++A +IR+WMG+F I+NVAKCA+RMGQS SSTET +++ + E I+D
Sbjct: 540 NSAWMFSPIDGITAANIRQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVKPEEVERISD 599
Query: 1879 IELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAGYKGVVAIDPTMTS 1700
I +NGK Y+FSDGIG+IS+ FA++VA KCG K PSAFQIRY GYKGVVA+DPT +
Sbjct: 600 I---KNGK-YVFSDGIGKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVAVDPT-SR 654
Query: 1699 HKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDSVFETLQEQAITS 1520
+KLSLR SMRKY+S N LDVL+++K++PC+LNRQ+I LLSTLGV+D+VFET Q+ A++
Sbjct: 655 YKLSLRGSMRKYSSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQ 714
Query: 1519 IDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEEFRASKLLELKK 1340
+D L D A E L+ M GEN N+L +ML CGY P SEP+L MML+ FR KL ELK
Sbjct: 715 LDKILVDPESAFEALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKLSELKT 774
Query: 1339 RARIFVSNGRALMGCLDETRTLKYGEVFIQIT-------HPSEKKKCYDD-KYQGYLTVE 1184
+ RIF+ NGR++MGCLDET L+YG+VF+Q + H K + Q V
Sbjct: 775 KTRIFIPNGRSMMGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVV 834
Query: 1183 GKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECSGSDLDGDIYFV 1004
GKV+VAKNPCLHPGD+RIL A+ P L HMV+C+VFPQ+G RPHPNECSGSDLDGDIYFV
Sbjct: 835 GKVIVAKNPCLHPGDVRILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLDGDIYFV 894
Query: 1003 SWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQ 824
SWD +LIP PM+Y P LDHEVT++EI+E+F N+M+ND+LGIIAN H +FAD+
Sbjct: 895 SWDPMLIPCHQGTPMEYEPAPNNDLDHEVTIEEIEEYFTNYMINDSLGIIANAHTVFADK 954
Query: 823 EPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPQELFPKEYPDFMEKDDKKTYRSDRILG 644
EP A S+ C+ LA L S+AVDFPKTG+PA++PQ L+ KEYPDFM+K DK TY+S R++G
Sbjct: 955 EPMKADSTPCVDLANLFSVAVDFPKTGVPADIPQHLYVKEYPDFMDKTDKPTYQSRRVIG 1014
Query: 643 KLYRSVKGVATLDYNIRLDNKK---DIYDTELIVCGFEGYVDEALKYKRMYDSGMYRLMK 473
KL+R VK + I K YD ++ V GFE Y+D+A YK YD + LM
Sbjct: 1015 KLFREVKDLPPHTSAITSFTKSVALKSYDLDMEVDGFELYLDDAHWYKSEYDFKLAGLMD 1074
Query: 472 HYEANSEAEIISGNIQTLXXXXXXSKRKNGEIREESMKSVNSLMKEARGWFERSKIAT-- 299
HY +EAEI+SGNI +L +KR++ E +M+ SL KE RGWF+ +
Sbjct: 1075 HYGIKTEAEIVSGNILSL--AKSFTKRRDAEAIALAMR---SLRKEVRGWFKEKRSVVDE 1129
Query: 298 ------KNKYPKASAWYHVSYHPDYRHEK-SETNTSMESLISFPWVLHDILLEIKKKRLS 140
+ Y KASAWYH++YHP+Y E + ISFPW ++D L+ IK+ R+
Sbjct: 1130 GDYSLDDDVYAKASAWYHITYHPEYWGSYFEEDGRNRAHFISFPWCIYDKLIHIKRHRIG 1189
Query: 139 RKDSNMS 119
R ++ S
Sbjct: 1190 RGRNSRS 1196
>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 876 bits (2263), Expect = 0.0
Identities = 483/1023 (47%), Positives = 659/1023 (64%), Gaps = 14/1023 (1%)
Frame = -2
Query: 3160 LKNMLKCTLHMCCPIAEYTFCVLHSTTEVLVDLETNSRKICMYLQDNSVEYKLELSYTDI 2981
+++M TL+ C I++ F VL S +V + +KI +L S +YKL+LSY +I
Sbjct: 92 VEHMDGVTLNFGCQISDKKFAVLGSK-DVSIKFGIGLKKIYFFLSHASADYKLQLSYENI 150
Query: 2980 RYVIGDQLKDSENKIALLRLRHAPRVYYRIYDYFNRKLKQRRENVYEWVRTTDYTGSGSI 2801
V+ + + LL+L APR+Y R+ D K+ ++ +WVRTTD+T S I
Sbjct: 151 WQVVLHRPYGQNAQFLLLQLFGAPRIYKRLEDSCYSFFKETPDD--QWVRTTDFTPSW-I 207
Query: 2800 AKSSFFGWEISKLVNTTFLKETFVHYRKSEQDIALE--FCKQFTPNTKNLAILNPPEGCD 2627
SS E V E+F +Y++S L+ F F+ + I++ PEG +
Sbjct: 208 GLSSSLCLEFRNGVQLPNFSESFFYYKESMNQFILQTGFTFSFSQKLALVPIVHLPEGIE 267
Query: 2626 VPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLEFNAENIVHKPF 2447
+P+ ++FK+++L+Q G L+ FF + +R ++A ++ A KL + E + P
Sbjct: 268 LPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKE-CCYDPV 326
Query: 2446 DWLGEKLKAAENSNENGDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSNRVLRHFAE 2267
WL E+ + + L GL Y+ +V VTP ++YFC PE+ VSNRVLR+++E
Sbjct: 327 RWLTEQYDEYLKGRQLPKSPPITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSE 386
Query: 2266 HIENFLRVSFVDENRACLRSSDL--SWNTGNRSTKKCTDIYQRILDVLQEGIVIGNKKFE 2093
I NFLRVSFVDE + S+DL +TGN + TDIY+RIL L+ G +IG+K+FE
Sbjct: 387 DINNFLRVSFVDEEWEKIHSTDLLPRASTGNGTR---TDIYERILSTLRNGFIIGDKRFE 443
Query: 2092 FLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLSSSTETYD 1913
FLA+SSSQLR++S+WMFAS ++A+ IR WMG+F I+NVAK A+R+GQS SS ET
Sbjct: 444 FLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLS 503
Query: 1912 IQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQIRYAGYK 1733
+ +++ E I D+ +G YIFSDGIG+IS FA +V KCG PS+FQIRY GYK
Sbjct: 504 VGRHEVEVIPDVACSLHGTNYIFSDGIGKISADFAHRVTIKCGLQ-YTPSSFQIRYGGYK 562
Query: 1732 GVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTLGVKDSV 1553
GVVA+DP +S KLSLR SM KY S N LDVL W+KY+PCYLNRQ++ LLSTLGV D V
Sbjct: 563 GVVAVDP-YSSMKLSLRKSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDV 621
Query: 1552 FETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYLRMMLEE 1373
E Q +A+ +D+ L D KA E L+ M GEN NIL +ML CGY P +EP+L MML+
Sbjct: 622 LEQKQNEAVDQLDAILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQT 681
Query: 1372 FRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPS-----EKKKCYDDK 1208
FRASKLL+L+ R RIF+ NGR +MGCLDE+RTL+YG+VF+Q + E+ ++D
Sbjct: 682 FRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESHPFNDS 741
Query: 1207 YQGY--LTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECSG 1034
++G VVVAKNPCLHPGDIR+L AV P L HMVDC+VFPQ+G RPHPNECSG
Sbjct: 742 GSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSG 801
Query: 1033 SDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGII 854
SDLDGDIYFV WD LIPP+ Q MDY P QLDH+VT++E++E+F N+++ND+LGII
Sbjct: 802 SDLDGDIYFVCWDPDLIPPRQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGII 861
Query: 853 ANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPQELFPKEYPDFMEKDDK 674
AN H++FAD+EPDMA S C +LA+L SIAVDFPKTG+PAE+P +L PKEYPDFMEK DK
Sbjct: 862 ANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDK 921
Query: 673 KTYRSDRILGKLYRSVKGVATLDYNIRL---DNKKDIYDTELIVCGFEGYVDEALKYKRM 503
TY S++++GKL++ VK +I D + YD+++IV GFE Y+DEA YK
Sbjct: 922 PTYPSEKVIGKLFQKVKNKTPQASSIATFTRDVARKSYDSDMIVDGFEDYIDEAFYYKSE 981
Query: 502 YDSGMYRLMKHYEANSEAEIISGNIQTLXXXXXXSKRKNGEIREESMKSVNSLMKEARGW 323
YD+ + LM +Y +EAEI+SG I + +RK+ E +V L KEAR W
Sbjct: 982 YDNKLGNLMDYYGIKTEAEILSGGI--MKASKTFDRRKDA---EAIGVAVRCLRKEARAW 1036
Query: 322 FERSKIATKNKYPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDILLEIKKKRL 143
F+R + + KASAWYHV+YH Y +E + ISFPW ++D L++IKK +
Sbjct: 1037 FKR-RSDIDDMLAKASAWYHVTYHHTYWGLYNE-GLKRDHFISFPWCVYDQLIQIKKAKA 1094
Query: 142 SRK 134
++
Sbjct: 1095 RKR 1097