BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00000846
         (670 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solan...   124   2e-26
gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum de...   124   3e-26
gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum de...   123   4e-26
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   123   6e-26
ref|XP_002974914.1| hypothetical protein SELMODRAFT_150191 [Sela...   123   6e-26
ref|XP_006477872.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   122   1e-25
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...   121   2e-25
gb|AAT38699.2| RNA dependent RNA polymerase family protein [Sola...   121   2e-25
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   120   3e-25
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola...   120   4e-25
gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tu...   120   5e-25
gb|EMT27792.1| Putative RNA-dependent RNA polymerase 1 [Aegilops...   119   8e-25
gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum de...   119   8e-25
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   119   1e-24
gb|EMT03978.1| Putative RNA-dependent RNA polymerase 1 [Aegilops...   118   1e-24
gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare su...   118   1e-24
ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [A...   118   2e-24
gb|EOY01387.1| Rna-dependent RNA polymerase, putative [Theobroma...   118   2e-24
ref|XP_002988931.1| hypothetical protein SELMODRAFT_235652 [Sela...   117   2e-24
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   117   2e-24

>gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
          Length = 1137

 Score =  124 bits (312), Expect = 2e-26
 Identities = 76/188 (40%), Positives = 109/188 (57%), Gaps = 4/188 (2%)
 Frame = -1

Query: 670  TYISDRILGKLYRSVKGVATLDNNIRL---DNKKDIYDTELIVCGFDGYVDEALKYKRMY 500
            TYIS+R++GKL+R VK  A   ++I +   D+ +  YDT+L V GF+ Y+DEA  YK  Y
Sbjct: 944  TYISERVIGKLFRKVKDKAPQASSIAIFTRDDARRSYDTDLEVDGFEDYIDEAFDYKTEY 1003

Query: 499  DSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGWF 320
            D+ +  LM +Y   +EAEI+SG I               +  E    +V +L KEAR WF
Sbjct: 1004 DNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRR-----KDAEAISIAVRALRKEARTWF 1058

Query: 319  ERSKITTKNRCPKASAWYHVSYHPDYRREKSETNTSMESLISFPWVLHDILLEIKK-KGL 143
            +R +    +  PKASAWYHV+YHP Y    ++     +  ISFPW ++D L++IKK K  
Sbjct: 1059 KR-RNDIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRDHFISFPWCVYDQLIQIKKEKAR 1116

Query: 142  SRKDSNMS 119
            +R   N+S
Sbjct: 1117 NRPVLNLS 1124


>gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1180

 Score =  124 bits (310), Expect = 3e-26
 Identities = 76/188 (40%), Positives = 108/188 (57%), Gaps = 4/188 (2%)
 Frame = -1

Query: 670  TYISDRILGKLYRSVKGVATLDNNIRL---DNKKDIYDTELIVCGFDGYVDEALKYKRMY 500
            TYIS+R++GKL+R VK  A   ++I +   D  +  YD +L V GF+ Y+DEA  YK  Y
Sbjct: 987  TYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEY 1046

Query: 499  DSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGWF 320
            D+ +  LM +Y   +EAEI+SG I               +  E    +V +L KEAR WF
Sbjct: 1047 DNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRR-----KDAEAISVAVRALRKEARTWF 1101

Query: 319  ERSKITTKNRCPKASAWYHVSYHPDYRREKSETNTSMESLISFPWVLHDILLEIKK-KGL 143
            +R +    +  PKASAWYHV+YHP Y    ++     +  ISFPW ++D L++IKK K L
Sbjct: 1102 KR-RNDIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRDHFISFPWCVYDQLIQIKKEKAL 1159

Query: 142  SRKDSNMS 119
            +R   N+S
Sbjct: 1160 NRPVLNLS 1167


>gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1139

 Score =  123 bits (309), Expect = 4e-26
 Identities = 76/188 (40%), Positives = 108/188 (57%), Gaps = 4/188 (2%)
 Frame = -1

Query: 670  TYISDRILGKLYRSVKGVATLDNNIRL---DNKKDIYDTELIVCGFDGYVDEALKYKRMY 500
            TYIS+R++GKL+R VK  A   ++I +   D  +  YD +L V GF+ Y+DEA  YK  Y
Sbjct: 946  TYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDVDLEVDGFEDYIDEAFDYKTEY 1005

Query: 499  DSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGWF 320
            D+ +  LM +Y   +EAEI+SG I               +  E    +V +L KEAR WF
Sbjct: 1006 DNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRR-----KDAEAISIAVRALRKEARTWF 1060

Query: 319  ERSKITTKNRCPKASAWYHVSYHPDYRREKSETNTSMESLISFPWVLHDILLEIKK-KGL 143
            +R +    +  PKASAWYHV+YHP Y    ++     +  ISFPW ++D L++IKK K L
Sbjct: 1061 KR-RNDIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRDHFISFPWCVYDQLIQIKKEKAL 1118

Query: 142  SRKDSNMS 119
            +R   N+S
Sbjct: 1119 NRPVLNLS 1126


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  123 bits (308), Expect = 6e-26
 Identities = 76/188 (40%), Positives = 107/188 (56%), Gaps = 4/188 (2%)
 Frame = -1

Query: 670  TYISDRILGKLYRSVKGVATLDNNIRL---DNKKDIYDTELIVCGFDGYVDEALKYKRMY 500
            TYIS+R++GKLYR VK  A   ++  +   D  +  YD +L V GF+ Y+DEA  YK  Y
Sbjct: 922  TYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEY 981

Query: 499  DSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGWF 320
            D+ +  LM +Y   +EAEI+SG I               +  E    +V +L KEAR WF
Sbjct: 982  DNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRR-----KDAEAISIAVRALRKEARTWF 1036

Query: 319  ERSKITTKNRCPKASAWYHVSYHPDYRREKSETNTSMESLISFPWVLHDILLEIKK-KGL 143
            +R +    +  PKASAWYHV+YHP Y    ++     +  ISFPW ++D L++IKK K L
Sbjct: 1037 KR-RNDIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRDHFISFPWCVYDQLIQIKKEKAL 1094

Query: 142  SRKDSNMS 119
            +R   N+S
Sbjct: 1095 NRPVLNLS 1102


>ref|XP_002974914.1| hypothetical protein SELMODRAFT_150191 [Selaginella moellendorffii]
            gi|300157073|gb|EFJ23699.1| hypothetical protein
            SELMODRAFT_150191 [Selaginella moellendorffii]
          Length = 834

 Score =  123 bits (308), Expect = 6e-26
 Identities = 69/182 (37%), Positives = 107/182 (58%), Gaps = 4/182 (2%)
 Frame = -1

Query: 670  TYISDRILGKLYRSVKGVATLDNNIRLDNKKDI---YDTELIVCGFDGYVDEALKYKRMY 500
            TYIS R++GKLYRS++      N   L +++     YD  L+V G+  +++EA  +K  Y
Sbjct: 664  TYISTRVIGKLYRSIRESHRDTNTSPLVSERSFDQQYDRALVVQGYQSHLEEAKFFKECY 723

Query: 499  DSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGWF 320
            DS +  ++ HY+  SEAEI+SG++++L           G+     + +  +L+KEARGWF
Sbjct: 724  DSKLTSILNHYKV-SEAEIMSGSVRSLARYSRRRQ---GDAMARVVLAAKALVKEARGWF 779

Query: 319  ERS-KITTKNRCPKASAWYHVSYHPDYRREKSETNTSMESLISFPWVLHDILLEIKKKGL 143
            +   +IT    C KA AWYHV+YHP+ R++          L+SFPWV+ D L+ IKK+  
Sbjct: 780  DDGGEITENEACAKAFAWYHVTYHPEARKK--------SDLLSFPWVVSDKLVAIKKRNS 831

Query: 142  SR 137
            +R
Sbjct: 832  AR 833


>ref|XP_006477872.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1082

 Score =  122 bits (306), Expect = 1e-25
 Identities = 69/179 (38%), Positives = 99/179 (55%), Gaps = 6/179 (3%)
 Frame = -1

Query: 670  TYISDRILGKLYRSVKGVATLDNNIRLDNKK---DIYDTELIVCGFDGYVDEALKYKRMY 500
            +Y S  ++GKLYR+VK +A     I+   K+     YDT++ V GF+ Y+  A KYK +Y
Sbjct: 904  SYESQSVIGKLYRAVKDIAPSTATIKSFTKEVAMQSYDTDMEVDGFEDYITNAFKYKTVY 963

Query: 499  DSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGWF 320
            D+ +  LM +Y   +EAEI+SG I  +               E  + +V SL KEAR WF
Sbjct: 964  DNRLGNLMDYYGIKTEAEILSGCIMEMAKSFDKKRDL-----EAIIFAVKSLKKEARAWF 1018

Query: 319  ER---SKITTKNRCPKASAWYHVSYHPDYRREKSETNTSMESLISFPWVLHDILLEIKK 152
             +   S  + ++   KASAWYHV+YHP Y     E   +    +SFPW +HD L+EIK+
Sbjct: 1019 NKKNESDSSHEDVYAKASAWYHVAYHPSYWGRYKEEGMNRNHFLSFPWCIHDKLIEIKR 1077


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score =  121 bits (304), Expect = 2e-25
 Identities = 75/188 (39%), Positives = 107/188 (56%), Gaps = 4/188 (2%)
 Frame = -1

Query: 670  TYISDRILGKLYRSVKGVATLDNNIRL---DNKKDIYDTELIVCGFDGYVDEALKYKRMY 500
            TYIS+R++GKL+R VK  A   ++I +   D  +  YD +L V GF+ Y+DEA  YK  Y
Sbjct: 922  TYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEY 981

Query: 499  DSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGWF 320
            D+ +  LM +Y   +EAEI+SG I               +  E    +V +L KEAR WF
Sbjct: 982  DNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRR-----KDAEAISVAVRALRKEARTWF 1036

Query: 319  ERSKITTKNRCPKASAWYHVSYHPDYRREKSETNTSMESLISFPWVLHDILLEIKK-KGL 143
            +R +    +  PKASAWYHV+YHP Y    ++     +  ISFPW ++D L++IKK K  
Sbjct: 1037 KR-RNDIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRDHFISFPWCVYDQLIQIKKEKAR 1094

Query: 142  SRKDSNMS 119
            +R   N+S
Sbjct: 1095 NRPVLNLS 1102


>gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  121 bits (304), Expect = 2e-25
 Identities = 75/188 (39%), Positives = 107/188 (56%), Gaps = 4/188 (2%)
 Frame = -1

Query: 670  TYISDRILGKLYRSVKGVATLDNNIRL---DNKKDIYDTELIVCGFDGYVDEALKYKRMY 500
            TYIS+R++GKL+R VK  A   ++I +   D  +  YD +L V GF+ Y+DEA  YK  Y
Sbjct: 770  TYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEY 829

Query: 499  DSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGWF 320
            D+ +  LM +Y   +EAEI+SG I               +  E    +V +L KEAR WF
Sbjct: 830  DNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRR-----KDAEAISVAVRALRKEARTWF 884

Query: 319  ERSKITTKNRCPKASAWYHVSYHPDYRREKSETNTSMESLISFPWVLHDILLEIKK-KGL 143
            +R +    +  PKASAWYHV+YHP Y    ++     +  ISFPW ++D L++IKK K  
Sbjct: 885  KR-RNDIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRDHFISFPWCVYDQLIQIKKEKAR 942

Query: 142  SRKDSNMS 119
            +R   N+S
Sbjct: 943  NRPVLNLS 950


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
            tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
            tuberosum]
          Length = 1115

 Score =  120 bits (302), Expect = 3e-25
 Identities = 75/188 (39%), Positives = 106/188 (56%), Gaps = 4/188 (2%)
 Frame = -1

Query: 670  TYISDRILGKLYRSVKGVATLDNNIRL---DNKKDIYDTELIVCGFDGYVDEALKYKRMY 500
            TYIS+R++GKLYR VK  A   ++  +   D  +  YD +L V GF+ Y+DEA  YK  Y
Sbjct: 922  TYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEY 981

Query: 499  DSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGWF 320
            D+ +  LM +Y   +EAEI+SG I               +  E    +V +L KEAR WF
Sbjct: 982  DNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRR-----KDAEAISIAVRALRKEARTWF 1036

Query: 319  ERSKITTKNRCPKASAWYHVSYHPDYRREKSETNTSMESLISFPWVLHDILLEIKK-KGL 143
            +R +    +  PKASAWYHV+YHP Y    ++     +  ISFPW ++D L++IKK K  
Sbjct: 1037 KR-RNDIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRDHFISFPWCVYDQLIQIKKEKAR 1094

Query: 142  SRKDSNMS 119
            +R   N+S
Sbjct: 1095 NRPVLNLS 1102


>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  120 bits (301), Expect = 4e-25
 Identities = 75/188 (39%), Positives = 105/188 (55%), Gaps = 4/188 (2%)
 Frame = -1

Query: 670  TYISDRILGKLYRSVKGVATLDNNIRL---DNKKDIYDTELIVCGFDGYVDEALKYKRMY 500
            TYIS+R++GKL+R VK  A   ++  +   D  +  YD +L V GF+ Y+DEA  YK  Y
Sbjct: 770  TYISERVIGKLFRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEY 829

Query: 499  DSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGWF 320
            DS +  LM +Y   +EAEI+SG I               +  E    +V +L KEAR WF
Sbjct: 830  DSKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRR-----KDAEAISIAVRALRKEARTWF 884

Query: 319  ERSKITTKNRCPKASAWYHVSYHPDYRREKSETNTSMESLISFPWVLHDILLEIKK-KGL 143
            +R      +  PKASAWYHV+YHP Y    ++     +  ISFPW ++D L++IKK K  
Sbjct: 885  KRHN-DIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRDHFISFPWCVYDQLIQIKKEKAR 942

Query: 142  SRKDSNMS 119
            +R   N+S
Sbjct: 943  NRPVLNLS 950


>gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tuberosum]
          Length = 1050

 Score =  120 bits (300), Expect = 5e-25
 Identities = 74/188 (39%), Positives = 107/188 (56%), Gaps = 4/188 (2%)
 Frame = -1

Query: 670  TYISDRILGKLYRSVKGVATLDNNIRL---DNKKDIYDTELIVCGFDGYVDEALKYKRMY 500
            TYIS+R++GKL+R VK  A   ++  +   D  +  YD +L V GF+ Y+DEA  YK  Y
Sbjct: 857  TYISERVIGKLFRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEY 916

Query: 499  DSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGWF 320
            D+ +  LM++Y   +EAEI+SG I               +  E    +V +L KEAR WF
Sbjct: 917  DNKLGNLMEYYGIKTEAEILSGGIMKTSKTFDRR-----KDAEAISIAVRALRKEARTWF 971

Query: 319  ERSKITTKNRCPKASAWYHVSYHPDYRREKSETNTSMESLISFPWVLHDILLEIKK-KGL 143
            +R +    +  PKASAWYHV+YHP Y    ++     +  ISFPW ++D L++IKK K  
Sbjct: 972  KR-RNDIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRDHFISFPWCVYDQLIQIKKEKAR 1029

Query: 142  SRKDSNMS 119
            +R   N+S
Sbjct: 1030 NRPVLNLS 1037


>gb|EMT27792.1| Putative RNA-dependent RNA polymerase 1 [Aegilops tauschii]
          Length = 1144

 Score =  119 bits (298), Expect = 8e-25
 Identities = 71/179 (39%), Positives = 97/179 (54%), Gaps = 5/179 (2%)
 Frame = -1

Query: 670  TYISDRILGKLYRSVKGVATLDNNIRLDNKKDIYDTELIVCGFDGYVDEALKYKRMYDSS 491
            TY+S+ I+GKLYR +K       +   D  +  YDT+LIV G+  Y+ EA+ +K  YD  
Sbjct: 950  TYVSEGIIGKLYREIKKQNPHIGHFTKDVARRSYDTDLIVDGYQDYITEAVWFKEQYDFK 1009

Query: 490  MYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGWF--- 320
            +  LM+HY  NSEAEIISG I  +               +    +V SL KEAR WF   
Sbjct: 1010 LGNLMEHYGINSEAEIISGCILKMANNFTKKND-----ADAIRLAVKSLRKEARSWFSEM 1064

Query: 319  --ERSKITTKNRCPKASAWYHVSYHPDYRREKSETNTSMESLISFPWVLHDILLEIKKK 149
              + S    +    KASAWYHV+YHP+Y    +E        ISFPW ++D L++IK+K
Sbjct: 1065 GSDESGDGHEASDAKASAWYHVTYHPEYWGCYNEGYDHRPHFISFPWCVYDKLIQIKRK 1123


>gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1021

 Score =  119 bits (298), Expect = 8e-25
 Identities = 74/188 (39%), Positives = 106/188 (56%), Gaps = 4/188 (2%)
 Frame = -1

Query: 670  TYISDRILGKLYRSVKGVATLDNNIRL---DNKKDIYDTELIVCGFDGYVDEALKYKRMY 500
            TYIS+R++GKL+R VK  A   ++  +   D  +  YD +L V GF+ Y+DEA  YK  Y
Sbjct: 828  TYISERVIGKLFRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEY 887

Query: 499  DSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGWF 320
            D+ +  LM +Y   +EAEI+SG I               +  E    +V +L KEAR WF
Sbjct: 888  DNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRR-----KDAEAISIAVRALRKEARTWF 942

Query: 319  ERSKITTKNRCPKASAWYHVSYHPDYRREKSETNTSMESLISFPWVLHDILLEIKK-KGL 143
            +R +    +  PKASAWYHV+YHP Y    ++     +  ISFPW ++D L++IKK K  
Sbjct: 943  KR-RNDIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRDHFISFPWCVYDQLIQIKKEKAR 1000

Query: 142  SRKDSNMS 119
            +R   N+S
Sbjct: 1001 NRPVLNLS 1008


>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
          Length = 1122

 Score =  119 bits (297), Expect = 1e-24
 Identities = 68/174 (39%), Positives = 99/174 (56%), Gaps = 3/174 (1%)
 Frame = -1

Query: 667  YISDRILGKLYRS-VKGVATLDNNIRLDNK--KDIYDTELIVCGFDGYVDEALKYKRMYD 497
            YIS+ +LGKLYR+ V+    + +NI L  K  ++ YD +L V GF+ +++ A  +K MY 
Sbjct: 949  YISNGVLGKLYRALVESTTQVRSNIVLSEKFAEEAYDHQLEVNGFEAFLETASSHKEMYA 1008

Query: 496  SSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGWFE 317
              M  LM  Y+A +E E+++GN+Q             G++++  L SV  L +EA+ WFE
Sbjct: 1009 QKMSSLMSFYDAETEDEMLTGNLQNRASYLQRDNRRYGDMKDRILISVKDLQREAKEWFE 1068

Query: 316  RSKITTKNRCPKASAWYHVSYHPDYRREKSETNTSMESLISFPWVLHDILLEIK 155
             S          ASAWYHV+YHP Y  E S       + +SFPW++ DILL IK
Sbjct: 1069 -SDCQPHEYQLMASAWYHVTYHPKYSHESS-------TFLSFPWIVGDILLHIK 1114


>gb|EMT03978.1| Putative RNA-dependent RNA polymerase 1 [Aegilops tauschii]
          Length = 1056

 Score =  118 bits (296), Expect = 1e-24
 Identities = 73/184 (39%), Positives = 101/184 (54%), Gaps = 5/184 (2%)
 Frame = -1

Query: 670  TYISDRILGKLYRSVKGVATLDNNIRLDNKKDIYDTELIVCGFDGYVDEALKYKRMYDSS 491
            TY+S+ ++GKLYR +K  +    +   D  +  YD++LIV G+  Y+DEA+  K  YD  
Sbjct: 859  TYVSEGVIGKLYREIKKQSPRIEHFTKDVARRSYDSDLIVDGYQDYIDEAVWMKGEYDFK 918

Query: 490  MYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGWFERS 311
            +  LM+HY   SEAEIISG I  +          +  IR+    +V SL KEAR WF   
Sbjct: 919  LGNLMEHYGIKSEAEIISGCILKMAKNFTKSSDADA-IRQ----AVKSLRKEARSWFSEM 973

Query: 310  KITTKNRCP-----KASAWYHVSYHPDYRREKSETNTSMESLISFPWVLHDILLEIKKKG 146
             +      P     KASAWYHV+YHP+Y    +E       LISFPW ++D LL IK++ 
Sbjct: 974  NVGESGDVPEALYAKASAWYHVTYHPEYWGCYNE-GYGRPHLISFPWCVYDKLLLIKQRK 1032

Query: 145  LSRK 134
              R+
Sbjct: 1033 KFRR 1036


>gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]
          Length = 1115

 Score =  118 bits (296), Expect = 1e-24
 Identities = 75/185 (40%), Positives = 99/185 (53%), Gaps = 6/185 (3%)
 Frame = -1

Query: 670  TYISDRILGKLYRSVKGVATLDNNIRLDNKKDIYDTELIVCGFDGYVDEALKYKRMYDSS 491
            TY+S+ ++GKLYR +K       +   D     YDT+LIV G+  Y+ EA+ +K  YD  
Sbjct: 921  TYVSEGVIGKLYREIKKQNPHIRHFTKDVATLSYDTDLIVDGYQDYITEAVWFKEEYDFK 980

Query: 490  MYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGWF--- 320
            +  LM+HY  NSEAEIISG I  +               +    +V SL KEAR WF   
Sbjct: 981  LGNLMEHYGINSEAEIISGCILKMAKNFTKKSD-----ADAIRLAVKSLRKEARSWFSEM 1035

Query: 319  --ERSKITTKNRCPKASAWYHVSYHPDYRREKSETNTSMESLISFPWVLHDILLEIK-KK 149
              + S    K    KASAWYHV+YHP Y    +E       LISFPW ++D L+ IK KK
Sbjct: 1036 GSDESGDGHKALVAKASAWYHVTYHPQYWGCYNEGYDHRPHLISFPWCVYDKLILIKQKK 1095

Query: 148  GLSRK 134
             ++RK
Sbjct: 1096 NIARK 1100


>ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [Amborella trichopoda]
            gi|548839203|gb|ERM99496.1| hypothetical protein
            AMTR_s00088p00026960 [Amborella trichopoda]
          Length = 1107

 Score =  118 bits (295), Expect = 2e-24
 Identities = 68/176 (38%), Positives = 97/176 (55%), Gaps = 4/176 (2%)
 Frame = -1

Query: 670  TYISDRILGKLYRSVKGVATLDNNIRLDNKKDI----YDTELIVCGFDGYVDEALKYKRM 503
            TY S  ILGKLYR  K  A+   +  L + K++    YDT L+  GF+ +++ A+K+K  
Sbjct: 935  TYASPGILGKLYRLAKE-ASNSQSFELVSSKNVALPFYDTNLLAKGFEEFIELAVKHKEA 993

Query: 502  YDSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGW 323
            Y   +  LM +Y A SE+EI+SGNI              GE+++  L +V +L +EA+GW
Sbjct: 994  YGQKLQELMDYYGAESESEILSGNISKKSGYLQRDNRKYGEVKDRILIAVKNLQREAQGW 1053

Query: 322  FERSKITTKNRCPKASAWYHVSYHPDYRREKSETNTSMESLISFPWVLHDILLEIK 155
            F +S          ASAWYHV+Y PD+         S  +  SFPW+L D+LL IK
Sbjct: 1054 F-KSSCEPNQSSKLASAWYHVTYRPDH--------FSKVNFFSFPWILADVLLNIK 1100


>gb|EOY01387.1| Rna-dependent RNA polymerase, putative [Theobroma cacao]
          Length = 1125

 Score =  118 bits (295), Expect = 2e-24
 Identities = 71/190 (37%), Positives = 103/190 (54%), Gaps = 12/190 (6%)
 Frame = -1

Query: 670  TYISDRILGKLYRSVKGVATLDNNIRLDNKK---DIYDTELIVCGFDGYVDEALKYKRMY 500
            TY S+ ++GKLYR V+ + T ++  +   KK     YD+++ V GF+ YV++A  YK  Y
Sbjct: 920  TYESEGVIGKLYREVRALGTGESGAKQFTKKAAEQSYDSDMEVDGFEAYVNDAFHYKSEY 979

Query: 499  DSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGWF 320
            D+ +  LM++Y   +EAE+ISG I  +               E  + +V SL  E +GWF
Sbjct: 980  DNKLSNLMRYYGIKTEAEMISGCIMKMSKSFDRRRDL-----ETVVLAVKSLKNEVKGWF 1034

Query: 319  ERS-----KITTKNRCPKASAWYHVSYHPDYRREKSETNTSMESLISFPWVLHDILLEIK 155
             +      K   +N   KASAWYHV+YHP +    +E     E  ISFPW ++D LL+IK
Sbjct: 1035 NKKESHELKPNERNLFAKASAWYHVTYHPSFWGRYNE-GMDREQFISFPWCVYDKLLQIK 1093

Query: 154  ----KKGLSR 137
                KK L R
Sbjct: 1094 ENSSKKSLER 1103


>ref|XP_002988931.1| hypothetical protein SELMODRAFT_235652 [Selaginella moellendorffii]
            gi|300143268|gb|EFJ09960.1| hypothetical protein
            SELMODRAFT_235652 [Selaginella moellendorffii]
          Length = 755

 Score =  117 bits (294), Expect = 2e-24
 Identities = 69/182 (37%), Positives = 106/182 (58%), Gaps = 4/182 (2%)
 Frame = -1

Query: 670  TYISDRILGKLYRSVKGVATLDNNIRLDNKKDI---YDTELIVCGFDGYVDEALKYKRMY 500
            TYIS R++GKLYRS++      N   L +++     YD  L+V G+  +++EA  +K  Y
Sbjct: 588  TYISTRVIGKLYRSIRESHRDTNTSPLVSERSFDQQYDRALVVQGYQSHLEEAKFFKECY 647

Query: 499  DSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGWF 320
            +S +  ++ HY+  SEAEI+SG+I++L           G+     + +  +L+KEARGWF
Sbjct: 648  NSKLTSILNHYKV-SEAEIMSGSIRSLARYSRRRQ---GDAMARVVLAAKALVKEARGWF 703

Query: 319  ERS-KITTKNRCPKASAWYHVSYHPDYRREKSETNTSMESLISFPWVLHDILLEIKKKGL 143
            +   +IT    C KA AWYHV+YHP+ R+E          L+SFPWV   +L+ IKK+  
Sbjct: 704  DDGGEITENEACAKAFAWYHVTYHPEARKE--------SDLLSFPWV---VLVAIKKRNS 752

Query: 142  SR 137
            +R
Sbjct: 753  AR 754


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score =  117 bits (294), Expect = 2e-24
 Identities = 73/188 (38%), Positives = 105/188 (55%), Gaps = 4/188 (2%)
 Frame = -1

Query: 670  TYISDRILGKLYRSVKGVATLDNNIRL---DNKKDIYDTELIVCGFDGYVDEALKYKRMY 500
            +YIS+R++GKL+R VK  A   ++I     D  +  YD ++ V GF+ Y+DEA  YK  Y
Sbjct: 921  SYISERVIGKLFRKVKDKAPQASSIATFTRDVARRSYDADMEVDGFEDYIDEAFDYKTEY 980

Query: 499  DSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGWF 320
            D+ +  LM +Y   +EAEI+SG I               +  E    +V +L KEAR WF
Sbjct: 981  DNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRR-----KDAEAISVAVRALRKEARAWF 1035

Query: 319  ERSKITTKNRCPKASAWYHVSYHPDYRREKSETNTSMESLISFPWVLHDILLEIKK-KGL 143
            +R +    +  PKASAWYHV+YHP Y    ++        ISFPW ++D L++IKK K  
Sbjct: 1036 KR-RNDIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRAHFISFPWCVYDQLIQIKKDKAR 1093

Query: 142  SRKDSNMS 119
            +R   N+S
Sbjct: 1094 NRPVLNLS 1101