BLASTX nr result
ID: Ephedra26_contig00000685
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00000685
(2619 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsi... 146 1e-42
emb|CAN71037.1| hypothetical protein VITISV_011061 [Vitis vinifera] 141 2e-42
gb|EOY11267.1| Uncharacterized protein TCM_026511 [Theobroma cacao] 148 1e-39
gb|EOY32548.1| Uncharacterized protein TCM_040529 [Theobroma cacao] 143 9e-39
emb|CAB75932.1| putative protein [Arabidopsis thaliana] 126 5e-37
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi... 162 9e-37
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group... 125 7e-36
ref|XP_003376808.1| retrovirus-related Pol polyprotein from tran... 152 1e-35
gb|ABR16307.1| unknown [Picea sitchensis] 142 2e-35
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum] 117 4e-35
gb|AAT38797.2| Polyprotein, putative [Solanum demissum] 143 7e-35
emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera] 139 9e-35
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera] 139 1e-34
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 114 2e-34
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 114 2e-34
ref|XP_003376336.1| retrovirus-related Pol polyprotein from tran... 148 4e-34
gb|ABA99612.1| retrotransposon protein, putative, unclassified [... 125 6e-34
emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera] 138 6e-34
emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group] 125 1e-33
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 109 1e-33
>gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1347
Score = 146 bits (368), Expect(3) = 1e-42
Identities = 82/242 (33%), Positives = 126/242 (52%), Gaps = 1/242 (0%)
Frame = +2
Query: 1211 KKYFKSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXX 1390
K + K TR LE++H+D+CGP+ ++ G +Y + F +DY+ M W+ L
Sbjct: 501 KSFPKESQTKTREKLEIVHTDVCGPMQHQSIDGSRYYVLFLDDYTHMCWVYFLKQKSETF 560
Query: 1391 XXXXXXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITE 1570
V E +S S+ LR ++ +V +PY+PQQNG E
Sbjct: 561 ATFKKFKALV--EKQSNCSIKTLR--------PMEVFCEDEGINRQVTLPYSPQQNGAAE 610
Query: 1571 RNNRTSVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGL-NWITPY*VWYNLKPSI 1747
R NR+ V+M R W EAV T Y+ N +P + + + +TP W KP++
Sbjct: 611 RKNRSLVEMARSMLVEQDLPLKLWAEAVYTSAYLQNRLPSKAIEDDVTPMEKWCGHKPNV 670
Query: 1748 LHLHVFACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFV 1927
HL +F +C+ HIP ++R K + KAK G++IGY+ ++KGY++ E +KV VSRD F
Sbjct: 671 SHLRIFGSICYVHIPDQKRRKLDAKAKCGILIGYSNQTKGYRVFLLEDEKVEVSRDVVFQ 730
Query: 1928 ED 1933
ED
Sbjct: 731 ED 732
Score = 42.7 bits (99), Expect(3) = 1e-42
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 3/148 (2%)
Frame = +3
Query: 501 RNNHDTKYCFFNAKGPNYKPHMKSKRREPQQSSENNEVNLAKIKQDHMYVFFTNKE---Y 671
+N C+ K +Y +SK +E + E + +DHM + +E
Sbjct: 266 KNKRSNIKCYKCGKIGHYANECRSKNKERAHVTLEEE----DVNEDHMLFSASEEESTTL 321
Query: 672 NKDGWFLDYSYNSHMTRDRNIFTNYKTSNSDNFVKMVGDERLPVRGYGDNTLNFGNNIIT 851
+D W +D +HMT++ F+N S +++ + + G GD T+ +
Sbjct: 322 REDVWLVDSGCTNHMTKEERYFSNINKSIKVP-IRVRNGDIVMTAGKGDITVMTRHGKRI 380
Query: 852 LIDALYIKGL*KNLTSLYKLLTQRYNMR 935
+ + + GL KNL S+ ++++ Y +R
Sbjct: 381 IKNVFLVPGLEKNLLSVPQIISSGYWVR 408
Score = 34.7 bits (78), Expect(3) = 1e-42
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 1045 QNSFFTNIKISNLWHSRLGHNNNEYLSMI--KAAISHGPKNLSPTKVCSSCIIAKLHKKI 1218
+ + N++ WH RLGH +N+ L + K ++ P+ + C +C + K +K
Sbjct: 443 EEAMTANVQTEETWHKRLGHVSNKRLQQMQDKELVNGLPRFKVTKETCKACNLGKQSRKS 502
Query: 1219 LQK*DQ 1236
K Q
Sbjct: 503 FPKESQ 508
>emb|CAN71037.1| hypothetical protein VITISV_011061 [Vitis vinifera]
Length = 1220
Score = 141 bits (355), Expect(3) = 2e-42
Identities = 74/228 (32%), Positives = 115/228 (50%)
Frame = +2
Query: 1253 LEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXXXXXXXVQTET 1432
LE+IHS +CGP++ ++ Y F +D S+M W+ L V+T++
Sbjct: 495 LELIHSYICGPMSIASLSNNVYFALFIDDLSRMTWVYFLKTKSQVLSMFKSFKKMVETQS 554
Query: 1433 RSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNRTSVKMIRXXX 1612
+L+ I + PY PQQN ++ER N+T ++M R
Sbjct: 555 GQNVKVLI-----------IDNGGEYISKEFNLTAPYLPQQNEVSERKNKTVMEMARCML 603
Query: 1613 XXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHVFACLCFYHIP 1792
W EAV T Y+LN +P + + TP W+ +KPS+ HL VF LC+ H+P
Sbjct: 604 FEKRLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIEAWFGVKPSVKHLKVFGSLCYLHVP 663
Query: 1793 KEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVEDN 1936
+RGK + +A++GV +GY ESKGY+I K+++SRD F E++
Sbjct: 664 SVKRGKLDERAEKGVFVGYAAESKGYRIYSLSRMKIVISRDVHFDENS 711
Score = 55.5 bits (132), Expect(3) = 2e-42
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 13/160 (8%)
Frame = +3
Query: 486 FHICDRNNHDTKYCF------FNAKGPNYKPHM----KSKRREPQQSSENNEVNLAKIKQ 635
FH C R NH K C+ FN N H ++K+++ QQ E N + + K
Sbjct: 228 FH-CRRTNHAEKDCWNKGKPLFNCNFCNKLCHSEKYCRAKKKQSQQQPEKNASVIEENKN 286
Query: 636 DHMYVFFTNK---EYNKDGWFLDYSYNSHMTRDRNIFTNYKTSNSDNFVKMVGDERLPVR 806
D ++F ++ + + W +D SHMT+ +IFT+ S VK+ E + +
Sbjct: 287 DDEHLFMASQTLSSHELNTWLIDSGCTSHMTKYLSIFTSIDRSVQPK-VKLGNGEVVQAK 345
Query: 807 GYGDNTLNFGNNIITLIDALYIKGL*KNLTSLYKLLTQRY 926
G G ++ + + LYI L +NL S+ ++L Y
Sbjct: 346 GKGTIAISTKRGTKIVTNVLYIPDLDQNLLSVAQMLRNGY 385
Score = 26.2 bits (56), Expect(3) = 2e-42
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +1
Query: 982 IKKLRLKGLNRMGYLL*NLCLQNSFFTNIKISNLWHSRLGHNNNEYLS-MIKAAISHGPK 1158
I K+++ G + YL +L + F I S +WH GH N + L M +A +
Sbjct: 404 IAKIKMNG--NIFYLKLDLVEGHVFSAKIDESVVWHKSYGHFNLKSLRFMQEAGMVEDML 461
Query: 1159 NLS-PTKVCSSCIIAKLHKK 1215
+S + C SC + K ++
Sbjct: 462 EISVNAQTCESCELGKQQRQ 481
>gb|EOY11267.1| Uncharacterized protein TCM_026511 [Theobroma cacao]
Length = 1318
Score = 148 bits (373), Expect(3) = 1e-39
Identities = 80/237 (33%), Positives = 124/237 (52%)
Frame = +2
Query: 1223 KSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXX 1402
+S+ +T R L++IH+D+CGPI ++ G KY + F +D+S+ WI L
Sbjct: 509 QSQTRTANR-LQLIHTDICGPIGTLSLNGNKYFILFIDDFSRFCWIFFLKQKSEAIQYFM 567
Query: 1403 XXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNR 1582
V+ +T K L N + + +PY+PQQNG++ER NR
Sbjct: 568 KFKVLVEKQTDQKIKALRSDNGSEYTSNEFKALLTQEGIKQFLTVPYSPQQNGVSERKNR 627
Query: 1583 TSVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHV 1762
T ++MIR +W EA + N IP LN +TP+ VW+ KPSI ++ V
Sbjct: 628 TIMEMIRCLLFEQQMPKYFWAEAANFAVTLQNLIPTTALNSMTPFEVWHGYKPSISNVKV 687
Query: 1763 FACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVED 1933
F C+ + +P+++R K + K + + +GY+ SKGY++ ETKKV +SRD F ED
Sbjct: 688 FGCIAYAQVPQQKRTKLDSKTQISINLGYSSVSKGYRLFNVETKKVFISRDVVFNED 744
Score = 35.4 bits (80), Expect(3) = 1e-39
Identities = 29/154 (18%), Positives = 71/154 (46%), Gaps = 8/154 (5%)
Frame = +3
Query: 495 CDRNNHDTKYCFF----NAKGPNYKPHMKS--KRREPQQSSENNEVNLAKIKQDHMYVFF 656
C + NH +YC++ + N K H++ K +E + + V + ++ +++
Sbjct: 259 CKKKNHIERYCWYRPHVKCRACNQKGHVEKVCKNKENRVEEKAAIVEQKEDAEETLFMVI 318
Query: 657 TNKEYNKDG-WFLDYSYNSHMT-RDRNIFTNYKTSNSDNFVKMVGDERLPVRGYGDNTLN 830
+ + KD W +D + ++H+T + +N K S V++ L + G G +
Sbjct: 319 ESNDSKKDSIWLIDSACSTHITGKIKNFLDLNKAYKST--VEIGDGNLLKIAGRGTVGIT 376
Query: 831 FGNNIITLIDALYIKGL*KNLTSLYKLLTQRYNM 932
+ T+ + + + +NL S+ +L+ ++ ++
Sbjct: 377 TKKGMKTIANVCFAPEVTQNLLSVGQLVKEKNSL 410
Score = 30.0 bits (66), Expect(3) = 1e-39
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Frame = +1
Query: 961 PAAISLAIKKLRLK----GLNRMGYLL*NLCLQNSFFTNIKISNLWHSRLGHNNNEYLSM 1128
P+ +A K+R K LN G++ C+ N + LWH RLGH N +++
Sbjct: 422 PSGREIATVKMRNKCFPLDLNEAGHMAYK-CVSNE-------ARLWHRRLGHINYQFIKN 473
Query: 1129 IKA--AISHGPKNLSPTKVCSSCIIAK 1203
+ + ++ P K C C+ K
Sbjct: 474 MGSLNLVNDMPIITEVEKTCEVCLQGK 500
>gb|EOY32548.1| Uncharacterized protein TCM_040529 [Theobroma cacao]
Length = 1266
Score = 143 bits (361), Expect(3) = 9e-39
Identities = 78/237 (32%), Positives = 123/237 (51%)
Frame = +2
Query: 1223 KSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXX 1402
+S+ + T R L++IH+D+CGPI ++ G KY + F +D+S+ WI L
Sbjct: 509 QSQTRATNR-LQLIHTDICGPIGTLSLNGNKYFILFIDDFSRFCWIFFLKQKSEAIQYFM 567
Query: 1403 XXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNR 1582
V+ +T K L N + + + Y+PQQNG++ER NR
Sbjct: 568 KFKVLVEKQTDQKIKALRSDNGSEYTSNEFKALLTQEGIKQFLTVTYSPQQNGVSERKNR 627
Query: 1583 TSVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHV 1762
T ++MIR +W EA + N IP LN +TP+ VW+ KPSI ++ V
Sbjct: 628 TIMEMIRCLLFEQQMPKYFWAEAANFAVTLQNLIPTTALNSMTPFEVWHGYKPSISNVKV 687
Query: 1763 FACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVED 1933
F C+ + +P+++R K + K + + +GY+ SKGY++ +TKKV +SRD F ED
Sbjct: 688 FGCIAYAQVPQQKRTKLDSKTQISINLGYSSVSKGYRLFNVKTKKVFISRDVVFNED 744
Score = 36.6 bits (83), Expect(3) = 9e-39
Identities = 30/154 (19%), Positives = 71/154 (46%), Gaps = 8/154 (5%)
Frame = +3
Query: 495 CDRNNHDTKYCFF----NAKGPNYKPHMKS--KRREPQQSSENNEVNLAKIKQDHMYVFF 656
C + NH +YC++ + N K H++ K +E + + V + ++ +++
Sbjct: 259 CKKKNHIERYCWYRPHVKCRACNQKGHVEKVCKNKENRVEEKVAIVEQKEDAEETLFMVI 318
Query: 657 TNKEYNKDG-WFLDYSYNSHMT-RDRNIFTNYKTSNSDNFVKMVGDERLPVRGYGDNTLN 830
+ + KD W +D + ++H+T + +N K S V++ L + G G +
Sbjct: 319 ESNDSKKDSIWLIDSACSTHITGKIKNFLDLNKAYKST--VEIGDGNLLKIEGRGTIGIT 376
Query: 831 FGNNIITLIDALYIKGL*KNLTSLYKLLTQRYNM 932
I T+ + + + +NL S+ +L+ ++ ++
Sbjct: 377 TKKGIKTIANVCFAPEVTQNLLSVGQLVKEKNSL 410
Score = 30.4 bits (67), Expect(3) = 9e-39
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Frame = +1
Query: 961 PAAISLAIKKLRLK----GLNRMGYLL*NLCLQNSFFTNIKISNLWHSRLGHNNNEYLSM 1128
P+ +A K+R K LN G++ C+ N + LWH RLGH N +++
Sbjct: 422 PSGREIATVKMRNKCFPLDLNEAGHMAYK-CVSNE-------ARLWHRRLGHINYQFIKN 473
Query: 1129 IKA--AISHGPKNLSPTKVCSSCIIAK 1203
+ + ++ P K C C+ K
Sbjct: 474 MGSLNLVNDMPVITEVEKTCEVCLQGK 500
>emb|CAB75932.1| putative protein [Arabidopsis thaliana]
Length = 1339
Score = 126 bits (316), Expect(3) = 5e-37
Identities = 67/227 (29%), Positives = 110/227 (48%)
Frame = +2
Query: 1253 LEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXXXXXXXVQTET 1432
L+++HSD+CGPI P + GK+YIL+F +D+++ W+ L V+ E
Sbjct: 495 LQLVHSDICGPITPISHSGKRYILSFIDDFTRKTWVYFLHEKSEAFATFKIFKASVEKEI 554
Query: 1433 RSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNRTSVKMIRXXX 1612
+ + L N ++ + PQQNG+ ER NRT + +R
Sbjct: 555 GAFLTCLRTDRGGEFTSNEFGEFCRSHGISRQLTAAFTPQQNGVAERKNRTIMNAVRSML 614
Query: 1613 XXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHVFACLCFYHIP 1792
+W EA +I N P + +TP W KP + + VF C+ + HIP
Sbjct: 615 SERQVPKMFWSEATKWSVHIQNRSPTAAVEGMTPEEAWSGRKPVVEYFRVFGCIGYVHIP 674
Query: 1793 KEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVED 1933
++R K + K+K+ V +G +EESK +++ KK+++S+D F ED
Sbjct: 675 DQKRSKLDDKSKKCVFLGVSEESKAWRLYDPVMKKIVISKDVVFDED 721
Score = 41.2 bits (95), Expect(3) = 5e-37
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Frame = +1
Query: 979 AIKKLRLKGLNRMGYLL*N------LCLQNSFFTNIKISNLWHSRLGHNNNEYLSMI--K 1134
AI + + G NRM +LL + LCLQ + K ++LWH R GH N E L ++ K
Sbjct: 397 AIMETNMSG-NRMFFLLASKPQKNSLCLQTEEVMD-KENHLWHCRFGHLNQEGLKLLAHK 454
Query: 1135 AAISHGPKNLSPTKVCSSCIIAKLHKKILQK 1227
+ P + ++C+ C+ K H++ + K
Sbjct: 455 KMVIGLPILKATKEICAICLTGKQHRESMSK 485
Score = 37.4 bits (85), Expect(3) = 5e-37
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +3
Query: 585 PQQSSENNEVNLAKIKQDHMYVFFTNKEYNKDG-WFLDYSYNSHMTRDRNIFTNYKTSNS 761
P+ N L + ++ + + + N+D WFLD ++HMT + F+ +
Sbjct: 266 PEWEKNANYAELEEEEELLLMAYVEQNQANRDEVWFLDSGCSNHMTGSKEWFSELE-EGF 324
Query: 762 DNFVKMVGDERLPVRGYGDNTLNFGNNIITLIDALYIKGL*KNLTSLYKL 911
+ VK+ D R+ V G G + + + Y+ L NL SL +L
Sbjct: 325 NRTVKLGNDTRMSVVGKGSVKVKVNGVTQVIPEVYYVPELRNNLLSLGQL 374
Score = 60.5 bits (145), Expect(2) = 3e-10
Identities = 29/55 (52%), Positives = 37/55 (67%)
Frame = +2
Query: 2453 LTKPPEDKKIIGCRWVYNIKYLPNGEIDKYKAQLTAQGFHQKEGIDYKESFAPIA 2617
LT P+ IG +WVY K +GE+DKYKA+L A+G+ Q GIDY E FAP+A
Sbjct: 858 LTTLPKGFTPIGVKWVYKTKLNEDGEVDKYKARLVAKGYAQCYGIDYTEVFAPVA 912
Score = 33.9 bits (76), Expect(2) = 3e-10
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 2376 DALVDPKWKEAMDKEIQILVDHGTWD*PNHPK 2471
DA+ D W+EAM+ EI+ +V + TW+ PK
Sbjct: 832 DAVKDKIWREAMEHEIESIVKNNTWELTTLPK 863
>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1499
Score = 162 bits (409), Expect = 9e-37
Identities = 83/241 (34%), Positives = 125/241 (51%), Gaps = 1/241 (0%)
Frame = +2
Query: 1211 KKYFKSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXX 1390
+ + K T + LE+IHSD+CGP+ ++ G +Y LTF +D+S+M W+ L
Sbjct: 502 RSFPKKSQSNTNKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVYFLKNKSEVI 561
Query: 1391 XXXXXXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITE 1570
V+ ++ S+ L E+ PY+PQQNG+ E
Sbjct: 562 TKFKIFKPYVENQSESRIKRLRTDGGGEFLSREFIKLCQESGIHHEITTPYSPQQNGVAE 621
Query: 1571 RNNRTSVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLN-WITPY*VWYNLKPSI 1747
R NRT V+M R +W EA+ T Y+ N +P + L +TP +W KPS+
Sbjct: 622 RRNRTLVEMARSMIEEKKLSNKFWAEAIATSTYLQNRLPSKSLEKGVTPMEIWSGKKPSV 681
Query: 1748 LHLHVFACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFV 1927
HL VF C+C+ HIP E+R K + KAK+G+ +GY+ ESKGY++ +K+ VS+D F
Sbjct: 682 DHLKVFGCVCYIHIPDEKRRKLDTKAKQGIFVGYSNESKGYRVFLLNEEKIEVSKDVTFD 741
Query: 1928 E 1930
E
Sbjct: 742 E 742
Score = 56.6 bits (135), Expect(2) = 8e-09
Identities = 23/51 (45%), Positives = 37/51 (72%)
Frame = +2
Query: 2465 PEDKKIIGCRWVYNIKYLPNGEIDKYKAQLTAQGFHQKEGIDYKESFAPIA 2617
P+DK +I +W++ +K +GE K KA+L A+GF Q+ G+DY E+FAP++
Sbjct: 876 PKDKNVISVKWIFRLKTDASGEAIKRKARLVARGFTQEYGVDYLETFAPVS 926
Score = 32.7 bits (73), Expect(2) = 8e-09
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +3
Query: 2304 NKESEEFLCNVVELPNPDGSKNIHDALVDPKWKEAMDKEIQILVDHGTWD*PNHPKIRRS 2483
N+ E L + + L + + + +A+ D KW EAM +E++++ + TW+ PK +
Sbjct: 822 NEVEGEALIHEMCLMMAEEPQALEEAMKDEKWIEAMREELRMIEKNKTWEVVARPKDKNV 881
Query: 2484 LDV 2492
+ V
Sbjct: 882 ISV 884
>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108711922|gb|ABF99717.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1335
Score = 125 bits (315), Expect(3) = 7e-36
Identities = 69/226 (30%), Positives = 109/226 (48%)
Frame = +2
Query: 1253 LEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXXXXXXXVQTET 1432
LE++H+D+ G + + G Y +TF +DY++M W+ L V+ ++
Sbjct: 517 LELVHADIVGKVPTISEGGNWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAMVENQS 576
Query: 1433 RSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNRTSVKMIRXXX 1612
K +L + ++ Y+ QQNG+ ER NRT M
Sbjct: 577 NRKIKVLRSDQGREYISKEFEKYCENAGIRRQLTAGYSAQQNGVAERKNRTINDMANSML 636
Query: 1613 XXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHVFACLCFYHIP 1792
++W EAV T YILN P + + TP+ WY KP I H+ VF C+C+ +P
Sbjct: 637 QDKGMPKSFWAEAVNTAVYILNRSPTKAVTNRTPFEAWYGKKPVIGHMRVFGCICYAQVP 696
Query: 1793 KEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVE 1930
++R K + K+ R + +GY + KGY++ E KK+I+SRD F E
Sbjct: 697 AQKRVKFDNKSDRCIFVGYADGIKGYRLYNLEKKKIIISRDAIFDE 742
Score = 40.8 bits (94), Expect(3) = 7e-36
Identities = 68/334 (20%), Positives = 119/334 (35%), Gaps = 30/334 (8%)
Frame = +3
Query: 15 KGIFDLI*SKK*SHTIWSKLKNVLAGST---ASTIARLRNQLHNLRFA*DKSMAKFIQEI 185
+ +F I K S W KLK GS A + LR Q NL + + + +
Sbjct: 75 ESLFPRIIGAKKSKEAWDKLKEEFQGSQKVLAVKLQTLRRQFQNLLMKESEKVKDYFSRV 134
Query: 186 CEIRDRIDVCEIPLDESELFYSVPDALPS-----------D*NAFKDSIF------LIRN 314
EI +++ + +++ ++ + +LP + KDS+ L R
Sbjct: 135 IEIVNQMRLYGEDINDQKVVEKILISLPEKYEYIVAATEESKDLSKDSLESHEERKLQRE 194
Query: 315 KISFDALCQALLEKKQGNTRKRTSYY-------EVQYA*NKTIXXXXXXXXXXXXXXXXX 473
S + Q+ L + N+R R ++ + Y
Sbjct: 195 GSSIENAFQSKLSFRPQNSRFRGNFQKNGFPMRDRGYFQKNGFSRQKEDGQERREKGTSS 254
Query: 474 XXXXFHICDRNNHDTKYCFFNAKGPNYKPHMKSKRREPQQSSENNEVNLAKIKQDHMYVF 653
IC +++H T C+ K K K + ++ E N N ++ K+ +
Sbjct: 255 SNLWCDICQKSSHTTDMCW--KKMTCNKCKRKGHIAKYCRTREINRANFSQEKEKSEEMV 312
Query: 654 F---TNKEYNKDGWFLDYSYNSHMTRDRNIFTNYKTSNSDNFVKMVGDERLPVRGYGDNT 824
F T +E D W +D +HM D N+F +S + M G G
Sbjct: 313 FSCHTAQEEKDDVWVIDSGCTNHMAADPNLFREMDSSYHAK-IHMGNGSIAQSEGKGTVA 371
Query: 825 LNFGNNIITLIDALYIKGL*KNLTSLYKLLTQRY 926
+ + + D L + L +NL S+ +LL Y
Sbjct: 372 VQTADGPKFIKDVLLVPDLKQNLLSIGQLLEHGY 405
Score = 34.3 bits (77), Expect(3) = 7e-36
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +1
Query: 1009 NRMGYLL*NLCLQNSFFTNIKISNLWHSRLGHNNNEYLSMI--KAAISHGPKNLSPTKVC 1182
NR L N Q + + + IS+LWH R+GH N L ++ K + P + C
Sbjct: 433 NRNFLLRMNHTTQMALRSEVDISDLWHKRMGHLNYRALKLLRTKGMVQGLPFITLKSDPC 492
Query: 1183 SSCIIAK 1203
C+ K
Sbjct: 493 EGCVFGK 499
Score = 69.7 bits (169), Expect = 6e-09
Identities = 29/55 (52%), Positives = 40/55 (72%)
Frame = +2
Query: 2453 LTKPPEDKKIIGCRWVYNIKYLPNGEIDKYKAQLTAQGFHQKEGIDYKESFAPIA 2617
L P D+++IG +WVY K P+G + KYKA+L A+GF QK GIDY E++AP+A
Sbjct: 877 LVDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETYAPVA 931
>ref|XP_003376808.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trichinella spiralis] gi|316974460|gb|EFV57947.1|
retrovirus-related Pol polyprotein from transposon TNT
1-94 [Trichinella spiralis]
Length = 1324
Score = 152 bits (384), Expect(2) = 1e-35
Identities = 82/240 (34%), Positives = 119/240 (49%)
Frame = +2
Query: 1223 KSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXX 1402
KS K ++ LE++HSD+CGP+ ++ G +Y L+F +D+S+ ++ L
Sbjct: 472 KSATKRSKEVLELVHSDICGPMQVASVGGARYFLSFIDDFSRKSFVYFLKHKNEVLPKFK 531
Query: 1403 XXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNR 1582
V+ +T + L N E IP PQQNG+ ER NR
Sbjct: 532 DFIAMVERQTSKRVKCLRTDNGREYVNNMFAEFLVRKGIRHERTIPETPQQNGVAERMNR 591
Query: 1583 TSVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHV 1762
T V+ R W EAV T NY+ N P + L +TP W KP++ HL V
Sbjct: 592 TLVEKARTMLIDANLSPDLWAEAVGTANYLRNRCPTKALRKVTPEEAWSGRKPNLAHLKV 651
Query: 1763 FACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVEDNIP 1942
F CL H+P QR K +PK++ + +GY E SKGY+ + +TKK+ V+RD KF+E P
Sbjct: 652 FGCLAMVHVPSGQRKKWDPKSEERIFVGYCETSKGYRTVDRKTKKMYVTRDVKFLESQFP 711
Score = 27.3 bits (59), Expect(2) = 1e-35
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 1072 ISNLWHSRLGHNNNEYLSMIKAAISHGPKNLSPTKV-CSSCIIAK 1203
+ +LWH RLGH + + +++ + G + + TK C +C+ K
Sbjct: 420 VPDLWHRRLGHLSRGSMKLLQDGQATGIPSDAITKTDCVTCLKGK 464
>gb|ABR16307.1| unknown [Picea sitchensis]
Length = 407
Score = 142 bits (357), Expect(2) = 2e-35
Identities = 76/246 (30%), Positives = 118/246 (47%)
Frame = +2
Query: 1205 YTKKYFKSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXX 1384
+ +K+ K K + L ++HSDL GP+ P++ G +Y+LTF +DYS+ W+ L
Sbjct: 118 HMEKFIKGKSWRAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDE 177
Query: 1385 XXXXXXXXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGI 1564
V+ ++ +L E +PY PQQNG+
Sbjct: 178 VFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGV 237
Query: 1565 TERNNRTSVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPS 1744
ER NRT ++M R +W EA+ T YI+N P + TP W KP+
Sbjct: 238 AERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPT 297
Query: 1745 ILHLHVFACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKF 1924
+ H VF C + HIP E+R K + K+ + +M+GY+E SK Y++ E ++++ RD F
Sbjct: 298 VSHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAYRVYDPEKNEILIRRDVIF 357
Query: 1925 VEDNIP 1942
E IP
Sbjct: 358 DERCIP 363
Score = 36.6 bits (83), Expect(2) = 2e-35
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 1072 ISNLWHSRLGHNNNEYLSMIKA-AISHG-PKNLSPTKVCSSCIIAKLH 1209
+S LWH R+GH N + LS++K + +G PK VC C+ K H
Sbjct: 71 VSRLWHERMGHLNYKSLSLMKRFEMVYGLPKISQSQGVCEGCMSGKQH 118
>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
Length = 1338
Score = 117 bits (294), Expect(3) = 4e-35
Identities = 69/227 (30%), Positives = 105/227 (46%)
Frame = +2
Query: 1253 LEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXXXXXXXVQTET 1432
L+++HSD+CGP ++ G +Y +TF +D+S+ W+ L V+ ET
Sbjct: 480 LDLVHSDVCGPFKK-SLGGARYFVTFIDDHSRKTWVYTLKTKDQVFQVFKQFLTLVERET 538
Query: 1433 RSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNRTSVKMIRXXX 1612
K + + + + P PQ NG+ ER NRT ++ R
Sbjct: 539 GKKLKCIRTDNGG-EYQGQFDAYCKEHGIRHQFTPPKTPQLNGLAERMNRTLIERTRCLL 597
Query: 1613 XXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHVFACLCFYHIP 1792
+WGEA++T Y+LN P L + P +W S L VF C + H+P
Sbjct: 598 SHSKLPKAFWGEALVTAAYVLNHSPCVPLQYKAPEKIWLGRDISYDQLRVFGCKAYVHVP 657
Query: 1793 KEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVED 1933
K++R K + K + V IGY ++ GYK KK++ SRD FVED
Sbjct: 658 KDERSKLDVKTRECVFIGYGQDMLGYKFYDPVEKKLVRSRDVVFVED 704
Score = 51.6 bits (122), Expect(3) = 4e-35
Identities = 73/343 (21%), Positives = 131/343 (38%), Gaps = 10/343 (2%)
Frame = +3
Query: 51 SHTIWSKLKNVLAGSTASTIARLRNQLHNLRFA*DKSMAKFIQEICEIRDRIDVCEIPLD 230
+ ++W KL+ + A T + +L +++ ++A + EI I D++ I D
Sbjct: 79 ARSLWDKLEELYASKTGNNKLFYLTKLMQVKYVEGTTVADHLNEIQGIVDQLSGMGIKFD 138
Query: 231 ESELFYSVPDALPSD*NAFKDSI-------FLIRNKISFDALCQALLEKKQGNTRKRTSY 389
+ L V LP K SI + + L + + + QG + ++
Sbjct: 139 DEVLALMVLATLPESWETLKVSITNSAPNGVVNMETVKSGILNEEMRRRSQGTSSSQSEV 198
Query: 390 YEVQYA*NKTIXXXXXXXXXXXXXXXXXXXXXFHICDRNNHDTKYCFFNAKGPNYKPHMK 569
V ++ H C + H ++C + N + K
Sbjct: 199 LAVTTR-GRSQNKSQSNRDKSRGKSNKFANVECHYCKKKGHIKRFC---RQFQNDQKKNK 254
Query: 570 SKRREPQQSS--ENNEVNLAKIKQDHMYVFFTNKEYNKDGWFLDYSYNSHMTRDRNIFTN 743
K+ +P++SS E N + D + T +E W +D H T R +F++
Sbjct: 255 GKKVKPEESSDDETNSFGEFNVVYDDDIINLTTQEMT---WVIDSGATIHATPRRELFSS 311
Query: 744 YKTSNSDNFVKMVGDERLPVRGYGDNTLNFGNNI-ITLIDALYIKGL*KNLTSLYKLLTQ 920
Y T VKM V G GD L N + + L D ++ + NL S+ KL +
Sbjct: 312 Y-TLGDFGRVKMGNANFSTVVGKGDVCLETMNGMKLLLRDVRHVPDMRLNLISVDKLDEE 370
Query: 921 RYNMRAF*KGNGQTCCHISCNQKIKAEGT*QNGLFTMKPMLTE 1049
Y F NGQ ++ + A GT Q+ L+ + +++
Sbjct: 371 GY-CNTF--HNGQ--WKLTKGSLMVARGTKQSKLYVTQASISQ 408
Score = 28.9 bits (63), Expect(3) = 4e-35
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 1060 TNIKISNLWHSRLGHNNNEYLSMIKAAISHGPKNLSPTKVCSSCIIAKLHK 1212
+NIK LWH RLGH + + ++ + + N K C+ C+ K ++
Sbjct: 418 SNIK---LWHRRLGHMSEKSMARLVKKNALPGLNQIQLKKCADCLAGKQNR 465
>gb|AAT38797.2| Polyprotein, putative [Solanum demissum]
Length = 1793
Score = 143 bits (361), Expect(2) = 7e-35
Identities = 76/226 (33%), Positives = 119/226 (52%)
Frame = +2
Query: 1253 LEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXXXXXXXVQTET 1432
L++IH+D+CGPI ++ G KY L F +DY++M W+ + V+ +
Sbjct: 628 LQLIHTDVCGPIKTDSLSGNKYFLLFIDDYTRMCWVYFIRLKSEVFDVFKQFKALVENQC 687
Query: 1433 RSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNRTSVKMIRXXX 1612
+ L + ++ +PY PQQNG++ER NRT ++M R
Sbjct: 688 NLRIKALRSDNGGEHTSFQFVEFCNSTCIECQLTLPYTPQQNGVSERKNRTVMEMARCLL 747
Query: 1613 XXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHVFACLCFYHIP 1792
+ EA+ T Y+LN +P + L +TPY W KPS+ HL +F C C+Y +P
Sbjct: 748 LERKIPNQFLAEAINTSVYLLNRLPTKALQDMTPYEAWCGNKPSVHHLRIFGCKCYYRVP 807
Query: 1793 KEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVE 1930
K +R K + KA +G+ +GY+ SKGYKI ++K+I+SR+ KF E
Sbjct: 808 KTKRTKLDNKAHKGIFMGYS-SSKGYKIFCLRSEKLILSREVKFDE 852
Score = 33.5 bits (75), Expect(2) = 7e-35
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 1075 SNLWHSRLGHNNNEYLSMI--KAAISHGPKNLSPTKVCSSC 1191
+NLWH R GH N ++ + K + + P+ LS +VC +C
Sbjct: 566 TNLWHKRFGHFNLRSIAEMKKKELVENMPEFLSNAQVCETC 606
Score = 57.4 bits (137), Expect(2) = 4e-06
Identities = 23/54 (42%), Positives = 35/54 (64%)
Frame = +2
Query: 2453 LTKPPEDKKIIGCRWVYNIKYLPNGEIDKYKAQLTAQGFHQKEGIDYKESFAPI 2614
L P +I C+W+Y I +G ID+YKA+L A+GF Q+ G+D ++F+PI
Sbjct: 1417 LVPPDPSNNVIACKWLYKIMRKVDGSIDRYKARLVAKGFTQRPGVDLHDTFSPI 1470
Score = 22.7 bits (47), Expect(2) = 4e-06
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 18/64 (28%)
Frame = +3
Query: 2316 EEFLCNVVELPNPDGSKNIHDALVDP------------------KWKEAMDKEIQILVDH 2441
EE+L + L N D +++HD + +W+ AM E L +
Sbjct: 1353 EEYLPPPIILTNADTIRHMHDIVSSGYAPTVCDTSTFNQASKHIEWQNAMQAEFDALRKN 1412
Query: 2442 GTWD 2453
TW+
Sbjct: 1413 HTWE 1416
>emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]
Length = 1183
Score = 139 bits (350), Expect(2) = 9e-35
Identities = 77/240 (32%), Positives = 115/240 (47%)
Frame = +2
Query: 1211 KKYFKSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXX 1390
K + K + + CLE+IH+DLCGP+ + G +Y L F+ D+S+M W+ L
Sbjct: 418 KPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTNDHSRMSWVYFLQSKAETF 477
Query: 1391 XXXXXXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITE 1570
V+ ++ +L N + E+ PY+P+QNG+ E
Sbjct: 478 ETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDFKVFCEEEGLHRELTTPYSPEQNGVAE 537
Query: 1571 RNNRTSVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSIL 1750
R NRT V+M R +W E V T Y+LN P + + TPY WY KP +
Sbjct: 538 RKNRTVVEMARSMMKAKNLSNHFWAEGVATAVYLLNISPTKAVLNRTPYEAWYGKKPWVS 597
Query: 1751 HLHVFACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVE 1930
HL VF + + I R K + K+ + + IGY +SKGYK+ + K+IVSR+ F E
Sbjct: 598 HLKVFGSVAYTLIESHNRSKLDEKSVKCIFIGYCSQSKGYKLYNPVSGKIIVSRNVVFDE 657
Score = 37.4 bits (85), Expect(2) = 9e-35
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 1075 SNLWHSRLGHNNNEYLSMI-KAAISHGPKNLSPTKVCSSCIIAKLHKKILQK 1227
SNLWH R GH N + L ++ K + G + VC CI K KK K
Sbjct: 371 SNLWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVNVCEGCIYGKQSKKPFPK 422
>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
Length = 1472
Score = 139 bits (349), Expect(2) = 1e-34
Identities = 78/240 (32%), Positives = 116/240 (48%)
Frame = +2
Query: 1211 KKYFKSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXX 1390
K + K + + CLE+IH+DLCGP+ + G +Y L F++D+S+M W+ L
Sbjct: 469 KPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETF 528
Query: 1391 XXXXXXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITE 1570
V+ ++ +L N + E+ PY+P QNG+ E
Sbjct: 529 ETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDFKVFXEEEGLHRELTTPYSPXQNGVAE 588
Query: 1571 RNNRTSVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSIL 1750
R NRT V+M R +W E V T Y+LN P + + TPY WY KP +
Sbjct: 589 RKNRTVVEMARSMMKAKNLSNHFWAEGVATAVYLLNISPTKAVLNRTPYEAWYGRKPWVS 648
Query: 1751 HLHVFACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVE 1930
HL VF + + I R K + K+ + + IGY +SKGYK+ + K+IVSR+ F E
Sbjct: 649 HLKVFGSVAYTLIDSHNRSKLDEKSVKCIFIGYCSQSKGYKLYNPVSGKIIVSRNVVFDE 708
Score = 37.4 bits (85), Expect(2) = 1e-34
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 1075 SNLWHSRLGHNNNEYLSMI-KAAISHGPKNLSPTKVCSSCIIAKLHKKILQK 1227
SNLWH R GH N + L ++ K + G + VC CI K KK K
Sbjct: 422 SNLWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVNVCEGCIYGKQSKKPFPK 473
Score = 68.6 bits (166), Expect = 1e-08
Identities = 27/55 (49%), Positives = 42/55 (76%)
Frame = +2
Query: 2453 LTKPPEDKKIIGCRWVYNIKYLPNGEIDKYKAQLTAQGFHQKEGIDYKESFAPIA 2617
L + PEDK +IG +WV+ KYL +G I K+KA+L A+G+ Q+ G+DY ++F+P+A
Sbjct: 779 LVELPEDKNVIGVKWVFRTKYLADGSIQKHKARLVAKGYAQQHGVDYDDTFSPVA 833
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 114 bits (286), Expect(3) = 2e-34
Identities = 70/237 (29%), Positives = 103/237 (43%)
Frame = +2
Query: 1220 FKSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXX 1399
F + TT L+ +HSDL GP + G +Y++T +DYS+ W L
Sbjct: 688 FNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVF 747
Query: 1400 XXXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNN 1579
V+ +T K +L + +P+ PQQNG+ ER N
Sbjct: 748 KEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMN 807
Query: 1580 RTSVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLH 1759
RT + R +W EAV T Y++N P ++ TP VW + L
Sbjct: 808 RTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLR 867
Query: 1760 VFACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVE 1930
VF C + H+ GK P+A + + +GY KGYK+ ETKKV++SR+ F E
Sbjct: 868 VFGCTAYAHV---DNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHE 921
Score = 42.4 bits (98), Expect(3) = 2e-34
Identities = 69/307 (22%), Positives = 109/307 (35%), Gaps = 18/307 (5%)
Frame = +3
Query: 60 IWSKLKNVLAGSTASTIARLRNQLHNLRFA*DKSMAKFIQEICEIRDRIDVCEIPLDESE 239
+W KL+ + ++ L+ L + D S+ + EI ++ E+ DE +
Sbjct: 290 LWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEVKYDEED 349
Query: 240 LFYSVPDALPSD*NAFKDSIFLIRNKIS----FDALCQALLEKKQGNTRKRTSYYE---- 395
L + +LPS F+D+I R+ ++ +DAL KK + S E
Sbjct: 350 LGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGLIV 409
Query: 396 ---VQYA*NKTIXXXXXXXXXXXXXXXXXXXXXFHICDRNNHDTKYCFFNAKGPNYKPHM 566
Q K C R+ HD C +K H
Sbjct: 410 WGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDIFEC--------WKLHD 461
Query: 567 KSKRR-----EPQQSSENNEVNLAKIKQD-HMYVFFTNKEYNKDGWFLDYSYNSHMTRDR 728
K KR + ++ E + K D + V + D W L+ + HM +R
Sbjct: 462 KDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNR 521
Query: 729 NIFTNYKTSNSDNFVKMVGDERLPVRGYGDNTLN-FGNNIITLIDALYIKGL*KNLTSLY 905
+ F Y+ V M D V G G + F I TL D +I L ++L SL
Sbjct: 522 DWFATYEAVQVGT-VLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLC 580
Query: 906 KLLTQRY 926
L + Y
Sbjct: 581 TLDRKGY 587
Score = 38.9 bits (89), Expect(3) = 2e-34
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +1
Query: 949 GMDKPAAISLAIKKLRLKGLN----RMGYLL*NLCLQNSFFTNIKISNLWHSRLGHNNNE 1116
G+ K SL + K +K N R +L N+ + +N +NLWH RLGH
Sbjct: 594 GILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEI 653
Query: 1117 YLSMIKAAISHGPKNLSPTKVCSSCIIAKLHKKI 1218
L+ + +++ K C CI K HK++
Sbjct: 654 GLAELSKRGLLDGQSIGKLKFCEHCIFGK-HKRV 686
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 114 bits (286), Expect(3) = 2e-34
Identities = 70/237 (29%), Positives = 103/237 (43%)
Frame = +2
Query: 1220 FKSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXX 1399
F + TT L+ +HSDL GP + G +Y++T +DYS+ W L
Sbjct: 481 FNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVF 540
Query: 1400 XXXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNN 1579
V+ +T K +L + +P+ PQQNG+ ER N
Sbjct: 541 KEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMN 600
Query: 1580 RTSVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLH 1759
RT + R +W EAV T Y++N P ++ TP VW + L
Sbjct: 601 RTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLR 660
Query: 1760 VFACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVE 1930
VF C + H+ GK P+A + + +GY KGYK+ ETKKV++SR+ F E
Sbjct: 661 VFGCTAYAHV---DNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHE 714
Score = 42.4 bits (98), Expect(3) = 2e-34
Identities = 69/307 (22%), Positives = 109/307 (35%), Gaps = 18/307 (5%)
Frame = +3
Query: 60 IWSKLKNVLAGSTASTIARLRNQLHNLRFA*DKSMAKFIQEICEIRDRIDVCEIPLDESE 239
+W KL+ + ++ L+ L + D S+ + EI ++ E+ DE +
Sbjct: 83 LWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEVKYDEED 142
Query: 240 LFYSVPDALPSD*NAFKDSIFLIRNKIS----FDALCQALLEKKQGNTRKRTSYYE---- 395
L + +LPS F+D+I R+ ++ +DAL KK + S E
Sbjct: 143 LGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGLIV 202
Query: 396 ---VQYA*NKTIXXXXXXXXXXXXXXXXXXXXXFHICDRNNHDTKYCFFNAKGPNYKPHM 566
Q K C R+ HD C +K H
Sbjct: 203 WGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDIFEC--------WKLHD 254
Query: 567 KSKRR-----EPQQSSENNEVNLAKIKQD-HMYVFFTNKEYNKDGWFLDYSYNSHMTRDR 728
K KR + ++ E + K D + V + D W L+ + HM +R
Sbjct: 255 KDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNR 314
Query: 729 NIFTNYKTSNSDNFVKMVGDERLPVRGYGDNTLN-FGNNIITLIDALYIKGL*KNLTSLY 905
+ F Y+ V M D V G G + F I TL D +I L ++L SL
Sbjct: 315 DWFATYEAVQVGT-VLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLC 373
Query: 906 KLLTQRY 926
L + Y
Sbjct: 374 TLDRKGY 380
Score = 38.9 bits (89), Expect(3) = 2e-34
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +1
Query: 949 GMDKPAAISLAIKKLRLKGLN----RMGYLL*NLCLQNSFFTNIKISNLWHSRLGHNNNE 1116
G+ K SL + K +K N R +L N+ + +N +NLWH RLGH
Sbjct: 387 GILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEI 446
Query: 1117 YLSMIKAAISHGPKNLSPTKVCSSCIIAKLHKKI 1218
L+ + +++ K C CI K HK++
Sbjct: 447 GLAELSKRGLLDGQSIGKLKFCEHCIFGK-HKRV 479
>ref|XP_003376336.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trichinella spiralis] gi|316974954|gb|EFV58419.1|
retrovirus-related Pol polyprotein from transposon TNT
1-94 [Trichinella spiralis]
Length = 1003
Score = 148 bits (374), Expect(2) = 4e-34
Identities = 81/240 (33%), Positives = 118/240 (49%)
Frame = +2
Query: 1223 KSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXX 1402
KS K ++ LE++HSD+CGP+ ++ G +Y L+F +D+S+ ++ L
Sbjct: 165 KSATKRSKEVLELVHSDICGPMQVASVGGARYFLSFIDDFSRKSFVYFLKHKNEVLSKFK 224
Query: 1403 XXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNR 1582
V+ +T + L N E IP PQQNG+ ER NR
Sbjct: 225 DFIAMVERQTSKRVKCLRTDNGREYVNNMFAEFLVRKGIRHERTIPETPQQNGVAERMNR 284
Query: 1583 TSVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHV 1762
T V+ R W EAV T NY+ N P + L +TP W KP++ HL V
Sbjct: 285 TLVEKARTMLIDANLSPDLWAEAVGTANYLRNRCPTKALRKVTPEEAWSGRKPNLAHLKV 344
Query: 1763 FACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVEDNIP 1942
F CL H+P QR K + K++ + +GY E SKGY+ + +TKK+ V+RD KF+E P
Sbjct: 345 FGCLAMVHVPSGQRKKWDLKSEERIFVGYCETSKGYRTVDRKTKKMYVTRDVKFLESQFP 404
Score = 25.8 bits (55), Expect(2) = 4e-34
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 1072 ISNLWHSRLGHNNNEYLSMIKAAISHGPKNLSPTKV-CSSCIIAK 1203
+ +LWH +LGH + + +++ + G + + TK C +C+ K
Sbjct: 113 VPDLWHRQLGHLSRGSMKLLQDGQATGIPSDAITKTDCVTCLKGK 157
>gb|ABA99612.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1198
Score = 125 bits (313), Expect(3) = 6e-34
Identities = 75/281 (26%), Positives = 129/281 (45%), Gaps = 10/281 (3%)
Frame = +2
Query: 1253 LEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXXXXXXXVQTET 1432
LE++H+D+ G + + G Y +TF +DY++M W+ L V+ ++
Sbjct: 468 LELVHTDIVGKVPTISEGGNWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAMVENQS 527
Query: 1433 RSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNRTSVKMIRXXX 1612
K +L + ++ Y+ QQNG+ ER NRT M
Sbjct: 528 NRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTAGYSAQQNGVAERKNRTINDMANSML 587
Query: 1613 XXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHVFACLCFYHIP 1792
++W EAV T YILN P + + TP+ WY KP I H+ VF C+C+ +P
Sbjct: 588 QDKGMPKSFWAEAVNTAIYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRVFGCICYAQVP 647
Query: 1793 KEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRD----------FKFVEDNIP 1942
++R K + K+ R + +GY + KGY++ E KK+I+SRD +K E +I
Sbjct: 648 AQKRVKFDNKSDRCIFVGYADGIKGYRLYNLEKKKIIISRDVIFDESATWNWKSPEASIV 707
Query: 1943 VPLTIRQTSHHTFDLRYLKDVQKTSIQIDLSICNRINRWHI 2065
P + ++ H ++ ++D ++ + + N W +
Sbjct: 708 EPQSFQEAEKHDNWIKAMED--------EIHMIEKNNTWEL 740
Score = 36.2 bits (82), Expect(3) = 6e-34
Identities = 34/147 (23%), Positives = 53/147 (36%), Gaps = 3/147 (2%)
Frame = +3
Query: 495 CDRNNHDTKYCFFNAKGPNYKPHMKSKRREPQQSSENNEVNLAKIKQDHMYVFF---TNK 665
C R H KYC ++ E N N ++ K+ + F T +
Sbjct: 232 CKRKGHIAKYC---------------------RTREINRANFSQEKEKSEEMVFSCHTAQ 270
Query: 666 EYNKDGWFLDYSYNSHMTRDRNIFTNYKTSNSDNFVKMVGDERLPVRGYGDNTLNFGNNI 845
E D W +D +HM D N+F +S + M G G + +
Sbjct: 271 EEKDDVWVIDSGCTNHMAADPNLFREMDSSYHAK-IHMGNGSIAQSEGKGTVAVQTADGP 329
Query: 846 ITLIDALYIKGL*KNLTSLYKLLTQRY 926
+ D L + L +NL S+ +LL Y
Sbjct: 330 KFIKDVLLVPDLKQNLLSIGQLLEHGY 356
Score = 33.1 bits (74), Expect(3) = 6e-34
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 1045 QNSFFTNIKISNLWHSRLGHNNNEYLSMI--KAAISHGPKNLSPTKVCSSCIIAK 1203
Q + + I IS+LWH R+GH N L ++ K + P + C C+ K
Sbjct: 396 QMALRSEIDISDLWHKRMGHLNYRALKLLRTKGMVQGLPFITLKSDPCEGCVFGK 450
Score = 69.7 bits (169), Expect = 6e-09
Identities = 29/55 (52%), Positives = 40/55 (72%)
Frame = +2
Query: 2453 LTKPPEDKKIIGCRWVYNIKYLPNGEIDKYKAQLTAQGFHQKEGIDYKESFAPIA 2617
L P D+++IG +WVY K P+G + KYKA+L A+GF QK GIDY E++AP+A
Sbjct: 740 LVDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETYAPVA 794
>emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]
Length = 1430
Score = 138 bits (347), Expect(2) = 6e-34
Identities = 77/240 (32%), Positives = 116/240 (48%)
Frame = +2
Query: 1211 KKYFKSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXX 1390
K + K + + CLE+IH+DLCGP+ + G +Y L F++D+S+M W+ L
Sbjct: 595 KPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETF 654
Query: 1391 XXXXXXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITE 1570
V+ ++ +L N + E+ PY+P+QNG+ E
Sbjct: 655 ETFKKFKAFVEKQSGKCIKVLRTDRXGEFLSNDFKVFCEEEGLHRELTTPYSPEQNGVAE 714
Query: 1571 RNNRTSVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSIL 1750
R NRT V+M R +W E V T Y+LN P + + TPY WY KP +
Sbjct: 715 RKNRTVVEMARSMMXAKNLSNHFWAEGVATAVYLLNISPTKAVLNRTPYEAWYGRKPWVS 774
Query: 1751 HLHVFACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVE 1930
HL VF + + R K + K+ + + IGY +SKGYK+ + K+IVSR+ F E
Sbjct: 775 HLKVFGSVAYTLXBSHNRSKLDEKSVKCIFIGYCSQSKGYKLYNPVSGKIIVSRNVVFDE 834
Score = 35.8 bits (81), Expect(2) = 6e-34
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 1075 SNLWHSRLGHNNNEYLSMI--KAAISHGPKNLSPTKVCSSCIIAKLHKKILQK 1227
SNLWH R GH N + L ++ K + PK + VC CI K KK K
Sbjct: 548 SNLWHLRYGHLNVKGLKLLSKKEMVFELPK-IDSVNVCEGCIYGKQSKKPFPK 599
Score = 68.6 bits (166), Expect = 1e-08
Identities = 27/55 (49%), Positives = 42/55 (76%)
Frame = +2
Query: 2453 LTKPPEDKKIIGCRWVYNIKYLPNGEIDKYKAQLTAQGFHQKEGIDYKESFAPIA 2617
L + PEDK +IG +WV+ KYL +G I K+KA+L A+G+ Q+ G+DY ++F+P+A
Sbjct: 950 LVELPEDKNVIGVKWVFRTKYLADGSIQKHKARLVAKGYAQQHGVDYDDTFSPVA 1004
>emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group]
Length = 1314
Score = 125 bits (314), Expect(3) = 1e-33
Identities = 69/225 (30%), Positives = 109/225 (48%)
Frame = +2
Query: 1256 EVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXXXXXXXVQTETR 1435
E++H+D+ G + + G Y +TF +DY++M W+ L V+ ++
Sbjct: 525 ELVHTDIVGKVPTMSEGGNWYFITFIDDYTRMIWVYFLKEKSAALETFKKFKVMVENQSN 584
Query: 1436 SKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNRTSVKMIRXXXX 1615
K +L + ++ Y+ QQNG+ ER NRT M
Sbjct: 585 RKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTTGYSAQQNGVAERKNRTINDMANSMLQ 644
Query: 1616 XXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHVFACLCFYHIPK 1795
++W EAV T YILN P + + TP+ WY KP I H+ VFAC+C+ +P
Sbjct: 645 DKGMPKSFWAEAVNTAVYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRVFACICYAQVPA 704
Query: 1796 EQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVE 1930
++R K + K+ R + +GY + KGY++ E KK+I+SRD F E
Sbjct: 705 QKRVKFDNKSNRCIFVGYADGIKGYRLYNLEKKKIIISRDVFFDE 749
Score = 34.3 bits (77), Expect(3) = 1e-33
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +1
Query: 1009 NRMGYLL*NLCLQNSFFTNIKISNLWHSRLGHNNNEYLSMI--KAAISHGPKNLSPTKVC 1182
NR L N Q + + + IS+LWH R+GH N L ++ K + P + C
Sbjct: 440 NRNFLLRMNHTTQMALRSEVDISDLWHKRMGHLNYRALKLLRTKGMVQGLPFITLKSDPC 499
Query: 1183 SSCIIAK 1203
C+ K
Sbjct: 500 EGCVFGK 506
Score = 33.9 bits (76), Expect(3) = 1e-33
Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 3/147 (2%)
Frame = +3
Query: 495 CDRNNHDTKYCFFNAKGPNYKPHMKSKRREPQQSSENNEVNLAKIKQDHMYVFF---TNK 665
C R H KYC ++ E N N ++ K+ + F T +
Sbjct: 288 CKRKGHIAKYC---------------------RTREINRANFSQEKEKSEEMVFSCHTAQ 326
Query: 666 EYNKDGWFLDYSYNSHMTRDRNIFTNYKTSNSDNFVKMVGDERLPVRGYGDNTLNFGNNI 845
E D W +D +HM D N+F + + M G G + +
Sbjct: 327 EEKDDVWVIDSGCTNHMAADPNLFREMDSLYHAK-IHMGNGSIAQSEGKGTVAVQTADGP 385
Query: 846 ITLIDALYIKGL*KNLTSLYKLLTQRY 926
+ D L + L +NL S+ +LL Y
Sbjct: 386 KFIKDVLLVPDLKQNLLSIGQLLEHGY 412
Score = 69.3 bits (168), Expect = 8e-09
Identities = 28/51 (54%), Positives = 39/51 (76%)
Frame = +2
Query: 2465 PEDKKIIGCRWVYNIKYLPNGEIDKYKAQLTAQGFHQKEGIDYKESFAPIA 2617
P D+++IG +WVY K P+G + KYKA+L A+GF QK GIDY E++AP+A
Sbjct: 888 PRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETYAPVA 938
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 109 bits (272), Expect(3) = 1e-33
Identities = 70/237 (29%), Positives = 101/237 (42%)
Frame = +2
Query: 1220 FKSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXX 1399
F + TT L+ +HSDL GP + G +Y++T +DYS+ W L
Sbjct: 481 FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFNVF 540
Query: 1400 XXXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNN 1579
V+ +T K +L + +P+ PQQNG+ ER N
Sbjct: 541 KEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMN 600
Query: 1580 RTSVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLH 1759
R + R +W EAV T Y++N P N TP VW + L
Sbjct: 601 RIIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYA-NKKTPIEVWSGSPANYSDLK 659
Query: 1760 VFACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVE 1930
VF C + H+ GK P+A + + +GY KGYK+ ETKKV++SR+ F E
Sbjct: 660 VFGCTAYAHV---DNGKLEPRAIKCIFLGYPSSVKGYKLWCPETKKVVISRNVVFHE 713
Score = 44.7 bits (104), Expect(3) = 1e-33
Identities = 69/310 (22%), Positives = 115/310 (37%), Gaps = 21/310 (6%)
Frame = +3
Query: 60 IWSKLKNVLAGSTASTIARLRNQLHNLRFA*DKSMAKFIQEICEIRDRIDVCEIPLDESE 239
+W KL+ + ++ L+ +L + D S+ + EI ++ E+ DE +
Sbjct: 83 LWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEKD 142
Query: 240 LFYSVPDALPSD*NAFKDSIFLIRNKISFDALCQALLEKK--------QGNTRK------ 377
L + +LPS F+D+I R+ ++ + AL K+ +G+ +
Sbjct: 143 LALILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVV 202
Query: 378 RTSYYEVQYA*NKTIXXXXXXXXXXXXXXXXXXXXXFHICDRNNHDTKYCFFNAKGPNYK 557
R S E + NK+ + C R+ HD C +K
Sbjct: 203 RGSQQE-KNTNNKSRDKSSSSYRGRSKSRGRYKSCKY--CKRDGHDISKC--------WK 251
Query: 558 PHMKSKRR-----EPQQSSENNEVNLAKIKQD-HMYVFFTNKEYNKDGWFLDYSYNSHMT 719
K KR + ++ E + K D + V + D W LD + HM
Sbjct: 252 LQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMC 311
Query: 720 RDRNIFTNYKTSNSDNFVKMVGDERLPVRGYGDNTLN-FGNNIITLIDALYIKGL*KNLT 896
+R+ F Y+ V M D V G G + F I TL D +I L ++L
Sbjct: 312 PNRDWFATYEVVQGGT-VLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLI 370
Query: 897 SLYKLLTQRY 926
SL L + Y
Sbjct: 371 SLCTLDRKGY 380
Score = 39.7 bits (91), Expect(3) = 1e-33
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Frame = +1
Query: 949 GMDKPAAISLAIKKLRLKGLNRMGY----LL*NLCLQNSFFTNIKISNLWHSRLGHNNNE 1116
G+ K SL + K +K N +L N+ + +N +NLWH RLGH +
Sbjct: 387 GILKVTKGSLVVMKASIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEI 446
Query: 1117 YLSMIKAAISHGPKNLSPTKVCSSCIIAKLHKKI 1218
L+ + +++S K C CI K HK++
Sbjct: 447 GLAELSKRGLLDGQSISKLKFCEHCIFGK-HKRV 479