BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00000681
         (2014 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY78476.1| RNA polymerase IV second largest subunit [Ginkgo ...   474   e-171
ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [S...   352   e-121
ref|NP_001177299.1| required to maintain repression7 [Zea mays] ...   351   e-121
gb|ADB19860.1| mutant required to maintain repression 7-3/RNA po...   351   e-121
gb|AFW59623.1| putative DNA-directed RNA polymerase subunit fami...   351   e-121
gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]    350   e-121
ref|XP_006827132.1| hypothetical protein AMTR_s00010p00249150 [A...   320   e-120
gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA p...   351   e-120
tpg|DAA35758.1| TPA: putative DNA-directed RNA polymerase subuni...   351   e-120
ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [S...   350   e-120
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...   335   e-118
ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerase D sub...   344   e-117
ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D sub...   342   e-117
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...   343   e-117
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV a...   347   e-117
emb|CAJ86030.1| B0414F07.4 [Oryza sativa Indica Group]                340   e-116
emb|CAD41847.2| OSJNBb0079B02.6 [Oryza sativa Japonica Group]         338   e-116
emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]         338   e-116
ref|NP_001054041.1| Os04g0641000 [Oryza sativa Japonica Group] g...   338   e-116
ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV a...   345   e-116

>gb|AAY78476.1| RNA polymerase IV second largest subunit [Ginkgo biloba]
          Length = 651

 Score =  474 bits (1221), Expect(4) = e-171
 Identities = 230/321 (71%), Positives = 270/321 (84%), Gaps = 1/321 (0%)
 Frame = +1

Query: 814  NEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTPYQAEKHS*QAIGHYTTSSRVRC 993
            N   +P FTHCELDPSFLLSL+A  IPF+N NLATRT YQ+EKHS QAIGHY+T+ R RC
Sbjct: 171  NNRSYPSFTHCELDPSFLLSLSAGFIPFSNHNLATRTLYQSEKHSKQAIGHYSTNPRARC 230

Query: 994  DTSSHQLLYPLKPLFRTLSYQCLSKPQFYNGQNAIIAVNVHYAYNQEDSLVANHASIDRG 1173
            DTS+HQL YP KPLF+T+S +CL+K QF+NGQNAI+AVNVHY YNQEDSLVANHASIDRG
Sbjct: 231  DTSAHQLFYPQKPLFKTMSSECLNKMQFFNGQNAIVAVNVHYGYNQEDSLVANHASIDRG 290

Query: 1174 LFRSVHFRTYTSETEFDENLSQTST-RLSLDLGKPQNKTLKIEKLDDDGLPHIDSDLYSG 1350
            LFRS+HF T+ SET+  +N S+ S+ R+ +D GKPQ   LK++KLDDDGLP I + L SG
Sbjct: 291  LFRSMHFHTFISETDHHDNDSKKSSFRVEVDFGKPQTGNLKVDKLDDDGLPFIGASLVSG 350

Query: 1351 DVLIGKVGPQTVDSNSSLKLKQTEKGRVDQVVLASNDNSKKYARARLMEMRAPSLGDKFS 1530
            D+LIGKVGPQ  D N SLKLK TEKGRVDQVV+++ND+ KK+AR  L E+R+PSLGDKFS
Sbjct: 351  DILIGKVGPQPSDVNFSLKLKHTEKGRVDQVVMSANDDDKKFARVCLREVRSPSLGDKFS 410

Query: 1531 SMHGQKGVLGFIEEQENMPFTKEAIVPDLIINLHAFPSRQTPGQLFECALGKAITASGVS 1710
            SMHGQKGV+GFIEEQENMPFT+E IVPDLIIN HAFPSRQTPGQLFECA GKAI +SGV 
Sbjct: 411  SMHGQKGVVGFIEEQENMPFTQEGIVPDLIINPHAFPSRQTPGQLFECAFGKAIASSGVV 470

Query: 1711 GDATPFRSITVDYIIERLKKC 1773
            GDATP+  +T+ YI E+L +C
Sbjct: 471  GDATPYGPVTLQYITEQLHRC 491



 Score =  117 bits (293), Expect(4) = e-171
 Identities = 63/109 (57%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
 Frame = +2

Query: 476 NGELIGICSNGDTLAHNLRVLRCKQCIDPMVEIKSDKSQREV*IFCDAGRLLRPLLLVRD 655
           NGE +G   + D L   LR LR KQ I P  EIK DK Q E+ IF DAGR+LRPL +VRD
Sbjct: 58  NGEWVGAYDDPDFLVEKLRDLRRKQRIHPHXEIKRDKKQNEIRIFSDAGRILRPLFIVRD 117

Query: 656 QNLCINKEQLAIFKKCEKPLLYLLNYGAIELLGV-EEEDTQIACGVEIL 799
           Q LCI+++Q+  FKK   P  YL+  G IE+LGV EEEDT+IACGV+IL
Sbjct: 118 QRLCISQKQIENFKKRGNPFKYLMERGIIEILGVEEEEDTKIACGVDIL 166



 Score = 46.6 bits (109), Expect(4) = e-171
 Identities = 23/57 (40%), Positives = 34/57 (59%)
 Frame = +3

Query: 306 TTSDGENYELVKNLAVISIACVTLDEEPNLDHLEQHGVASLDKVSPFDFNILRKVFL 476
           +T DGEN  LVKNLAV  +  +   E+P LD L + G+  LD++S F+      +F+
Sbjct: 1   STPDGENCGLVKNLAVTGLVSLHSAEDPILDILNECGITKLDQISSFNLKGAANIFI 57



 Score = 38.1 bits (87), Expect(4) = e-171
 Identities = 13/16 (81%), Positives = 16/16 (100%)
 Frame = +2

Query: 1883 CGYEQWGREQMYSGRT 1930
            CGY+QWG+EQMY+GRT
Sbjct: 491  CGYQQWGKEQMYNGRT 506


>ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
            gi|241938382|gb|EES11527.1| hypothetical protein
            SORBIDRAFT_06g030300 [Sorghum bicolor]
          Length = 1239

 Score =  352 bits (903), Expect(4) = e-121
 Identities = 173/333 (51%), Positives = 229/333 (68%), Gaps = 14/333 (4%)
 Frame = +1

Query: 814  NEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTPYQAEKHS*QAIGHYTTSSRVRC 993
            +EG    +THCELDPSFL+ L+  +IPFAN N A R  YQ+EKHS QAIG+ TT+  +R 
Sbjct: 743  SEGAISSYTHCELDPSFLMGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRV 802

Query: 994  DTSSHQLLYPLKPLFRTLSYQCL--------------SKPQFYNGQNAIIAVNVHYAYNQ 1131
            DT SHQL YP +PLF+T+   CL              ++P+++NGQNAI+AVNVH  +NQ
Sbjct: 803  DTLSHQLYYPQRPLFKTVIADCLGRSDYTAFGRKDDYTRPEYFNGQNAIVAVNVHQGFNQ 862

Query: 1132 EDSLVANHASIDRGLFRSVHFRTYTSETEFDENLSQTSTRLSLDLGKPQNKTLKIEKLDD 1311
            EDSLV N AS++RG+FR+ H R+Y ++ E  +   +   +  +D GK ++K  +++ LDD
Sbjct: 863  EDSLVMNRASLERGMFRTEHLRSYKTDVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDD 922

Query: 1312 DGLPHIDSDLYSGDVLIGKVGPQTVDSNSSLKLKQTEKGRVDQVVLASNDNSKKYARARL 1491
            DGLP+I + L + D++IGKV     D   S+KLK TEKG V +V+L++ND  K +A   L
Sbjct: 923  DGLPYIGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVVTL 980

Query: 1492 MEMRAPSLGDKFSSMHGQKGVLGFIEEQENMPFTKEAIVPDLIINLHAFPSRQTPGQLFE 1671
             ++R P LGDKFSSMHGQKGV+GF+E QEN PFT E IVPD++IN HAFP+RQTPGQL E
Sbjct: 981  RQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLE 1040

Query: 1672 CALGKAITASGVSGDATPFRSITVDYIIERLKK 1770
             ALGK I   G    ATPF + +VD I E+L K
Sbjct: 1041 AALGKGIACKGTMRYATPFTTASVDVIAEQLHK 1073



 Score = 77.0 bits (188), Expect(4) = e-121
 Identities = 49/121 (40%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
 Frame = +2

Query: 452 QHLEKGIFNGELIGICSNGDTLAHNLRVLRCKQCIDPMVEIKSDKSQREV*IFCDAGRLL 631
           Q ++K   NG  +G C +  +    LR +R    IDP VEIK DK  +EV +F DAGR+L
Sbjct: 630 QRMDKIFLNGNWVGSCKDSASFVFRLRCMRRSSMIDPQVEIKRDKHHKEVRVFSDAGRIL 689

Query: 632 RPLLLVRDQNLCINKEQLAIFKKCEKPLLYLLNYGAIELLGV-EEEDTQIACGVEILLKP 808
           RPLL+V + N  I K +   F   E     L+    IE +GV EEED Q A G+  L + 
Sbjct: 690 RPLLVVENLNK-IRKPKGRSFSFQE-----LMQQEIIEFIGVEEEEDIQCAWGIRHLFES 743

Query: 809 Q 811
           +
Sbjct: 744 E 744



 Score = 55.5 bits (132), Expect(4) = e-121
 Identities = 27/70 (38%), Positives = 43/70 (61%)
 Frame = +3

Query: 267 FRNPSYWGRVCFITTSDGENYELVKNLAVISIACVTLDEEPNLDHLEQHGVASLDKVSPF 446
           + NPSYWG++CF++T DGEN  LVKNLAV +I    +  +P ++     G++ L+ +   
Sbjct: 569 YPNPSYWGKLCFLSTPDGENCGLVKNLAVTAIVSSRVG-QPLIESFISCGMSKLNDIPTE 627

Query: 447 DFNILRKVFL 476
               + K+FL
Sbjct: 628 HIQRMDKIFL 637



 Score = 25.0 bits (53), Expect(4) = e-121
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 1886 GYEQWGREQMYSGRTSSPREQM 1951
            GY +WG E + +GRT    + +
Sbjct: 1075 GYSRWGAENVLNGRTGERMQSL 1096



 Score = 85.1 bits (209), Expect = 1e-13
 Identities = 38/90 (42%), Positives = 61/90 (67%)
 Frame = +1

Query: 1   TKYPTEVSVDELLNSHLFPAIDGHKQKVMFVGYLVNCLLSSYLGQRPVENRDDYYNKRVE 180
           +++P   S D+ +   LFP I+G++ K  F+GY+V CLL ++ G+R  +N+DD+ NKR++
Sbjct: 403 SRFPPAESFDDYVARFLFPDINGNRNKAFFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLD 462

Query: 181 LAAELLGHQMLVSLR*FRRRMTQAI*KDLS 270
           L  ELLG ++   LR   RRM +AI +DL+
Sbjct: 463 LPGELLGRELRAQLRLLERRMVKAIQRDLN 492


>ref|NP_001177299.1| required to maintain repression7 [Zea mays]
            gi|283443696|gb|ADB19857.1| required to maintain
            repression 7/RNA polymerase D second largest subunit [Zea
            mays] gi|297185477|gb|ADI24118.1| RPD2/E2a [Zea mays]
            gi|414585188|tpg|DAA35759.1| TPA: putative DNA-directed
            RNA polymerase subunit family protein [Zea mays]
          Length = 1229

 Score =  351 bits (901), Expect(4) = e-121
 Identities = 172/333 (51%), Positives = 229/333 (68%), Gaps = 14/333 (4%)
 Frame = +1

Query: 814  NEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTPYQAEKHS*QAIGHYTTSSRVRC 993
            +EG    +THCELDPSFLL L+  +IPFAN N A R  YQ+EKHS QAIG+ TT+  +R 
Sbjct: 733  SEGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRV 792

Query: 994  DTSSHQLLYPLKPLFRTLSYQCL--------------SKPQFYNGQNAIIAVNVHYAYNQ 1131
            DT SHQL YP +PLF+T+   CL              ++P+++NGQNAI+AVNVH  +NQ
Sbjct: 793  DTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQ 852

Query: 1132 EDSLVANHASIDRGLFRSVHFRTYTSETEFDENLSQTSTRLSLDLGKPQNKTLKIEKLDD 1311
            EDSLV N AS++RG+FR+ H R+Y ++ E  +   +   +  +D GK ++K  +++ LDD
Sbjct: 853  EDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDD 912

Query: 1312 DGLPHIDSDLYSGDVLIGKVGPQTVDSNSSLKLKQTEKGRVDQVVLASNDNSKKYARARL 1491
            DGLP++ + L + D++IGKV     D   S+KLK TEKG V +V+L++ND  K +A   L
Sbjct: 913  DGLPYVGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVVTL 970

Query: 1492 MEMRAPSLGDKFSSMHGQKGVLGFIEEQENMPFTKEAIVPDLIINLHAFPSRQTPGQLFE 1671
             ++R P LGDKFSSMHGQKGV+GF+E QEN PFT E IVPD++IN HAFP+RQTPGQL E
Sbjct: 971  RQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLE 1030

Query: 1672 CALGKAITASGVSGDATPFRSITVDYIIERLKK 1770
             ALGK I   G    ATPF + +VD I E+L +
Sbjct: 1031 AALGKGIACKGTMRYATPFTTASVDVIAEQLHR 1063



 Score = 78.2 bits (191), Expect(4) = e-121
 Identities = 50/121 (41%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
 Frame = +2

Query: 452 QHLEKGIFNGELIGICSNGDTLAHNLRVLRCKQCIDPMVEIKSDKSQREV*IFCDAGRLL 631
           Q ++K   NG  +G C N  +    LR +R    IDP VEIK DK   EV +F DAGR+L
Sbjct: 620 QRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAGRIL 679

Query: 632 RPLLLVRDQNLCINKEQLAIFKKCEKPLLYLLNYGAIELLGV-EEEDTQIACGVEILLKP 808
           RPLL+V + N  I K +   F   E     L+    IE +GV EEED Q A G+  L + 
Sbjct: 680 RPLLVVENLNK-IRKPKGRSFSFHE-----LMQQEIIEFIGVEEEEDIQCAWGIRHLFES 733

Query: 809 Q 811
           +
Sbjct: 734 E 734



 Score = 54.7 bits (130), Expect(4) = e-121
 Identities = 27/70 (38%), Positives = 43/70 (61%)
 Frame = +3

Query: 267 FRNPSYWGRVCFITTSDGENYELVKNLAVISIACVTLDEEPNLDHLEQHGVASLDKVSPF 446
           + NPSYWG++CF++T DGEN  LVKNLAV +I    +  +P ++     G++ L+ +   
Sbjct: 559 YPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRV-MQPLIESFISCGMSKLNDIPTE 617

Query: 447 DFNILRKVFL 476
               + K+FL
Sbjct: 618 HIQRMDKIFL 627



 Score = 24.6 bits (52), Expect(4) = e-121
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 1886 GYEQWGREQMYSGRT 1930
            GY +WG E + +GRT
Sbjct: 1065 GYSRWGSENVLNGRT 1079



 Score = 84.0 bits (206), Expect = 2e-13
 Identities = 37/90 (41%), Positives = 61/90 (67%)
 Frame = +1

Query: 1   TKYPTEVSVDELLNSHLFPAIDGHKQKVMFVGYLVNCLLSSYLGQRPVENRDDYYNKRVE 180
           +++P   S D+ +   LFP I G++ K +F+GY+V CLL ++ G+R  +N+DD+ NKR++
Sbjct: 393 SRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLD 452

Query: 181 LAAELLGHQMLVSLR*FRRRMTQAI*KDLS 270
           L  ELLG ++   LR   +RM +AI +DL+
Sbjct: 453 LPGELLGRELRAQLRLAEKRMVKAIQRDLN 482


>gb|ADB19860.1| mutant required to maintain repression 7-3/RNA polymerase D second
            largest subunit 2-3 [Zea mays]
          Length = 1094

 Score =  351 bits (901), Expect(4) = e-121
 Identities = 172/333 (51%), Positives = 229/333 (68%), Gaps = 14/333 (4%)
 Frame = +1

Query: 814  NEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTPYQAEKHS*QAIGHYTTSSRVRC 993
            +EG    +THCELDPSFLL L+  +IPFAN N A R  YQ+EKHS QAIG+ TT+  +R 
Sbjct: 733  SEGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRV 792

Query: 994  DTSSHQLLYPLKPLFRTLSYQCL--------------SKPQFYNGQNAIIAVNVHYAYNQ 1131
            DT SHQL YP +PLF+T+   CL              ++P+++NGQNAI+AVNVH  +NQ
Sbjct: 793  DTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQ 852

Query: 1132 EDSLVANHASIDRGLFRSVHFRTYTSETEFDENLSQTSTRLSLDLGKPQNKTLKIEKLDD 1311
            EDSLV N AS++RG+FR+ H R+Y ++ E  +   +   +  +D GK ++K  +++ LDD
Sbjct: 853  EDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDD 912

Query: 1312 DGLPHIDSDLYSGDVLIGKVGPQTVDSNSSLKLKQTEKGRVDQVVLASNDNSKKYARARL 1491
            DGLP++ + L + D++IGKV     D   S+KLK TEKG V +V+L++ND  K +A   L
Sbjct: 913  DGLPYVGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVVTL 970

Query: 1492 MEMRAPSLGDKFSSMHGQKGVLGFIEEQENMPFTKEAIVPDLIINLHAFPSRQTPGQLFE 1671
             ++R P LGDKFSSMHGQKGV+GF+E QEN PFT E IVPD++IN HAFP+RQTPGQL E
Sbjct: 971  RQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLE 1030

Query: 1672 CALGKAITASGVSGDATPFRSITVDYIIERLKK 1770
             ALGK I   G    ATPF + +VD I E+L +
Sbjct: 1031 AALGKGIACKGTMRYATPFTTASVDVIAEQLHR 1063



 Score = 78.2 bits (191), Expect(4) = e-121
 Identities = 50/121 (41%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
 Frame = +2

Query: 452 QHLEKGIFNGELIGICSNGDTLAHNLRVLRCKQCIDPMVEIKSDKSQREV*IFCDAGRLL 631
           Q ++K   NG  +G C N  +    LR +R    IDP VEIK DK   EV +F DAGR+L
Sbjct: 620 QRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAGRIL 679

Query: 632 RPLLLVRDQNLCINKEQLAIFKKCEKPLLYLLNYGAIELLGV-EEEDTQIACGVEILLKP 808
           RPLL+V + N  I K +   F   E     L+    IE +GV EEED Q A G+  L + 
Sbjct: 680 RPLLVVENLNK-IRKPKGRSFSFHE-----LMQQEIIEFIGVEEEEDIQCAWGIRHLFES 733

Query: 809 Q 811
           +
Sbjct: 734 E 734



 Score = 54.7 bits (130), Expect(4) = e-121
 Identities = 27/70 (38%), Positives = 43/70 (61%)
 Frame = +3

Query: 267 FRNPSYWGRVCFITTSDGENYELVKNLAVISIACVTLDEEPNLDHLEQHGVASLDKVSPF 446
           + NPSYWG++CF++T DGEN  LVKNLAV +I    +  +P ++     G++ L+ +   
Sbjct: 559 YPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRV-MQPLIESFISCGMSKLNDIPTE 617

Query: 447 DFNILRKVFL 476
               + K+FL
Sbjct: 618 HIQRMDKIFL 627



 Score = 24.6 bits (52), Expect(4) = e-121
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 1886 GYEQWGREQMYSGRT 1930
            GY +WG E + +GRT
Sbjct: 1065 GYSRWGSENVLNGRT 1079



 Score = 84.0 bits (206), Expect = 2e-13
 Identities = 37/90 (41%), Positives = 61/90 (67%)
 Frame = +1

Query: 1   TKYPTEVSVDELLNSHLFPAIDGHKQKVMFVGYLVNCLLSSYLGQRPVENRDDYYNKRVE 180
           +++P   S D+ +   LFP I G++ K +F+GY+V CLL ++ G+R  +N+DD+ NKR++
Sbjct: 393 SRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLD 452

Query: 181 LAAELLGHQMLVSLR*FRRRMTQAI*KDLS 270
           L  ELLG ++   LR   +RM +AI +DL+
Sbjct: 453 LPGELLGRELRAQLRLAEKRMVKAIQRDLN 482


>gb|AFW59623.1| putative DNA-directed RNA polymerase subunit family protein [Zea
            mays]
          Length = 2163

 Score =  351 bits (901), Expect(4) = e-121
 Identities = 172/333 (51%), Positives = 230/333 (69%), Gaps = 14/333 (4%)
 Frame = +1

Query: 814  NEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTPYQAEKHS*QAIGHYTTSSRVRC 993
            +EG    +THCELDPSF+L L+  +IPFAN N A R  YQ+EKHS QAIG+ T++ R+R 
Sbjct: 1667 SEGAISSYTHCELDPSFILGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTSNPRIRV 1726

Query: 994  DTSSHQLLYPLKPLFRTLSYQCL--------------SKPQFYNGQNAIIAVNVHYAYNQ 1131
            DT SHQL YP +PLF+T+   CL              ++P+++NGQNAI+AVNVH  +NQ
Sbjct: 1727 DTLSHQLYYPQRPLFKTVIADCLGRSDCTTFGRKDDFTRPEYFNGQNAIVAVNVHQGFNQ 1786

Query: 1132 EDSLVANHASIDRGLFRSVHFRTYTSETEFDENLSQTSTRLSLDLGKPQNKTLKIEKLDD 1311
            EDSLV N AS++RG+FR+ H R+Y ++ E  +   +   +  +D GK ++K  +++ LDD
Sbjct: 1787 EDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDD 1846

Query: 1312 DGLPHIDSDLYSGDVLIGKVGPQTVDSNSSLKLKQTEKGRVDQVVLASNDNSKKYARARL 1491
            DGLP+I + L + D++IGKV     D   S+KLK TEKG V +V+L++ND  K +A   L
Sbjct: 1847 DGLPYIGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVVTL 1904

Query: 1492 MEMRAPSLGDKFSSMHGQKGVLGFIEEQENMPFTKEAIVPDLIINLHAFPSRQTPGQLFE 1671
             ++R P LGDKFSSMHGQKGV+GF+E QEN PFT + IVPD++IN HAFP+RQTPGQL E
Sbjct: 1905 RQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHDGIVPDIVINPHAFPTRQTPGQLLE 1964

Query: 1672 CALGKAITASGVSGDATPFRSITVDYIIERLKK 1770
             ALGK I   G    ATPF + +VD I E+L K
Sbjct: 1965 AALGKGIACKGTMRYATPFTTASVDVIAEQLHK 1997



 Score = 77.4 bits (189), Expect(4) = e-121
 Identities = 50/121 (41%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
 Frame = +2

Query: 452  QHLEKGIFNGELIGICSNGDTLAHNLRVLRCKQCIDPMVEIKSDKSQREV*IFCDAGRLL 631
            Q ++K   NG  +G CS+  +    LR +R    IDP VEIK DK  +EV +F DAGR+L
Sbjct: 1554 QRMDKIFLNGNWLGSCSDSASFVFRLRCMRRSSLIDPQVEIKRDKHYKEVRLFSDAGRIL 1613

Query: 632  RPLLLVRDQNLCINKEQLAIFKKCEKPLLYLLNYGAIELLGV-EEEDTQIACGVEILLKP 808
            RPLL+V + N  I K +   F   E     L+    IE +GV EEED Q A G+  L + 
Sbjct: 1614 RPLLVVENLNK-IRKPKGRSFSFQE-----LMQQEIIEFIGVEEEEDIQCAWGIRHLFES 1667

Query: 809  Q 811
            +
Sbjct: 1668 E 1668



 Score = 54.7 bits (130), Expect(4) = e-121
 Identities = 28/70 (40%), Positives = 42/70 (60%)
 Frame = +3

Query: 267  FRNPSYWGRVCFITTSDGENYELVKNLAVISIACVTLDEEPNLDHLEQHGVASLDKVSPF 446
            + NPSYWG++CF++T DGEN  LVKNLAV SI    +  +P ++     G+  L+ +   
Sbjct: 1493 YPNPSYWGKLCFMSTPDGENCGLVKNLAVTSIVSSKV-VQPLIESFISCGMNKLNDIPTE 1551

Query: 447  DFNILRKVFL 476
                + K+FL
Sbjct: 1552 HIQRMDKIFL 1561



 Score = 24.6 bits (52), Expect(4) = e-121
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 1886 GYEQWGREQMYSGRT 1930
            GY +WG E + +GRT
Sbjct: 1999 GYSRWGAENVLNGRT 2013



 Score = 86.7 bits (213), Expect = 4e-14
 Identities = 39/90 (43%), Positives = 61/90 (67%)
 Frame = +1

Query: 1    TKYPTEVSVDELLNSHLFPAIDGHKQKVMFVGYLVNCLLSSYLGQRPVENRDDYYNKRVE 180
            +K+P   S D+ +   LFP I G++ K +F+GY+V CLL ++ G+R  +N+DD+ NKR++
Sbjct: 1327 SKFPPVESFDDYIAKFLFPGISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLD 1386

Query: 181  LAAELLGHQMLVSLR*FRRRMTQAI*KDLS 270
            L  ELLG ++   LR   RRM +AI +DL+
Sbjct: 1387 LPGELLGRELRAHLRQAERRMVKAIQRDLN 1416


>gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]
          Length = 1170

 Score =  350 bits (897), Expect(4) = e-121
 Identities = 172/333 (51%), Positives = 228/333 (68%), Gaps = 14/333 (4%)
 Frame = +1

Query: 814  NEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTPYQAEKHS*QAIGHYTTSSRVRC 993
            +EG    +THCELDPSFLL L+  +IPFAN N A R  YQ+EKHS QAIG+ TT+  +R 
Sbjct: 674  SEGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRV 733

Query: 994  DTSSHQLLYPLKPLFRTLSYQCL--------------SKPQFYNGQNAIIAVNVHYAYNQ 1131
            DT SHQL YP +PLF+T+   CL              ++P+++NGQNAI+AVNVH  +NQ
Sbjct: 734  DTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQ 793

Query: 1132 EDSLVANHASIDRGLFRSVHFRTYTSETEFDENLSQTSTRLSLDLGKPQNKTLKIEKLDD 1311
            EDSLV N AS++RG+FR+ H R+Y ++ E  +   +   +  +D GK ++K  + + LDD
Sbjct: 794  EDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRXDNLDD 853

Query: 1312 DGLPHIDSDLYSGDVLIGKVGPQTVDSNSSLKLKQTEKGRVDQVVLASNDNSKKYARARL 1491
            DGLP++ + L + D++IGKV     D   S+KLK TEKG V +V+L++ND  K +A   L
Sbjct: 854  DGLPYVGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVVTL 911

Query: 1492 MEMRAPSLGDKFSSMHGQKGVLGFIEEQENMPFTKEAIVPDLIINLHAFPSRQTPGQLFE 1671
             ++R P LGDKFSSMHGQKGV+GF+E QEN PFT E IVPD++IN HAFP+RQTPGQL E
Sbjct: 912  RQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLE 971

Query: 1672 CALGKAITASGVSGDATPFRSITVDYIIERLKK 1770
             ALGK I   G    ATPF + +VD I E+L +
Sbjct: 972  AALGKGIACKGTMRYATPFTTASVDVIAEQLHR 1004



 Score = 78.2 bits (191), Expect(4) = e-121
 Identities = 50/121 (41%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
 Frame = +2

Query: 452 QHLEKGIFNGELIGICSNGDTLAHNLRVLRCKQCIDPMVEIKSDKSQREV*IFCDAGRLL 631
           Q ++K   NG  +G C N  +    LR +R    IDP VEIK DK   EV +F DAGR+L
Sbjct: 561 QRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAGRIL 620

Query: 632 RPLLLVRDQNLCINKEQLAIFKKCEKPLLYLLNYGAIELLGV-EEEDTQIACGVEILLKP 808
           RPLL+V + N  I K +   F   E     L+    IE +GV EEED Q A G+  L + 
Sbjct: 621 RPLLVVENLNK-IRKPKGRSFSFHE-----LMQQEIIEFIGVEEEEDIQCAWGIRHLFES 674

Query: 809 Q 811
           +
Sbjct: 675 E 675



 Score = 54.7 bits (130), Expect(4) = e-121
 Identities = 27/70 (38%), Positives = 43/70 (61%)
 Frame = +3

Query: 267 FRNPSYWGRVCFITTSDGENYELVKNLAVISIACVTLDEEPNLDHLEQHGVASLDKVSPF 446
           + NPSYWG++CF++T DGEN  LVKNLAV +I    +  +P ++     G++ L+ +   
Sbjct: 500 YPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRV-MQPLIESFISCGMSKLNDIPTE 558

Query: 447 DFNILRKVFL 476
               + K+FL
Sbjct: 559 HIQRMDKIFL 568



 Score = 24.6 bits (52), Expect(4) = e-121
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 1886 GYEQWGREQMYSGRT 1930
            GY +WG E + +GRT
Sbjct: 1006 GYSRWGSENVLNGRT 1020



 Score = 84.0 bits (206), Expect = 2e-13
 Identities = 37/90 (41%), Positives = 61/90 (67%)
 Frame = +1

Query: 1   TKYPTEVSVDELLNSHLFPAIDGHKQKVMFVGYLVNCLLSSYLGQRPVENRDDYYNKRVE 180
           +++P   S D+ +   LFP I G++ K +F+GY+V CLL ++ G+R  +N+DD+ NKR++
Sbjct: 334 SRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLD 393

Query: 181 LAAELLGHQMLVSLR*FRRRMTQAI*KDLS 270
           L  ELLG ++   LR   +RM +AI +DL+
Sbjct: 394 LPGELLGRELRAQLRLAEKRMVKAIQRDLN 423


>ref|XP_006827132.1| hypothetical protein AMTR_s00010p00249150 [Amborella trichopoda]
            gi|548831561|gb|ERM94369.1| hypothetical protein
            AMTR_s00010p00249150 [Amborella trichopoda]
          Length = 1221

 Score =  320 bits (821), Expect(3) = e-120
 Identities = 161/288 (55%), Positives = 213/288 (73%), Gaps = 2/288 (0%)
 Frame = +1

Query: 835  FTHCELDPSFLLSLNASLIPFANRNLATRTPYQAEKHS*QAIGHYTTSSRVRCDTSSHQL 1014
            +THCELD SFLL L+  +IPFAN N+A R  +Q+EKHS QAIG +T++   R DT SH+L
Sbjct: 725  YTHCELDLSFLLGLSCGMIPFANHNMARRVLFQSEKHSQQAIGFFTSNPNNRVDTLSHRL 784

Query: 1015 LYPLKPLFRTLSYQCLSKPQFYNGQNAIIAVNVHYAYNQEDSLVANHASIDRGLFRSVHF 1194
             YP KPLF+T+  +C+  P+F+NGQNAI+AVNVH  YNQEDS+V N AS+DRG+FR+   
Sbjct: 785  YYPQKPLFKTMLSECIGIPEFHNGQNAIVAVNVHEGYNQEDSIVMNRASLDRGMFRTEIH 844

Query: 1195 RTYTSETEFDENLSQTSTRLSLDLGKPQNKTLKIEKLDDDGLPHIDSDLYSGDVLIGKVG 1374
            R+Y ++   D+++ +   + +   GKP N   KI+ LDD+GLP+I + +  GD++IG+  
Sbjct: 845  RSYKADIPVDDSVQRVKRKENEYFGKPINGFGKIDSLDDEGLPYIGASMKEGDIIIGRY- 903

Query: 1375 PQTVDSNS--SLKLKQTEKGRVDQVVLASNDNSKKYARARLMEMRAPSLGDKFSSMHGQK 1548
               VDS S  S+KLK TEKG V +VVL++ND + K A  +L ++R P LGDKFSSMHGQK
Sbjct: 904  ---VDSASDRSIKLKHTEKGIVQKVVLSANDEN-KLAVVQLRQVRTPCLGDKFSSMHGQK 959

Query: 1549 GVLGFIEEQENMPFTKEAIVPDLIINLHAFPSRQTPGQLFECALGKAI 1692
            GV+GFIE QEN PFT++ IVPD++IN HAFP+RQT GQL ECALGK I
Sbjct: 960  GVVGFIEAQENFPFTRQGIVPDIVINPHAFPTRQTAGQLLECALGKGI 1007



 Score = 93.6 bits (231), Expect(3) = e-120
 Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
 Frame = +2

Query: 461 EKGIFNGELIGICSNGDTLAHNLRVLRCKQCIDPMVEIKSDKSQREV*IFCDAGRLLRPL 640
           +K   NGE +G+C +       LR +R  + I   VE+K D+ Q EV IF DAGR+LRPL
Sbjct: 600 DKVFLNGEWVGLCEDSSRFVSELRNMRRNKLIHHQVEVKRDQPQHEVRIFSDAGRILRPL 659

Query: 641 LLVRDQNLCINKEQLAIFKKCEKPLLYLLNYGAIELLGV-EEEDTQIACGVEILLKPQ 811
           L+V +  LC++ EQ+  F K   P  YLL+   +E +GV EEED  IA GV+ LL  +
Sbjct: 660 LIVENNKLCVSLEQINEFIKKGCPFQYLLDKRIVEFIGVEEEEDCLIAWGVKHLLSDE 717



 Score = 70.5 bits (171), Expect(3) = e-120
 Identities = 39/83 (46%), Positives = 51/83 (61%)
 Frame = +3

Query: 228 IQKKNDSGNLKGSFRNPSYWGRVCFITTSDGENYELVKNLAVISIACVTLDEEPNLDHLE 407
           +Q   + GN +  + NPSYWG+VCF++T DGEN  LVKNLA   +    L  EP LD L 
Sbjct: 525 VQYTGNIGNAR--YPNPSYWGKVCFLSTPDGENCGLVKNLAATGLVSTNL-REPLLDKLT 581

Query: 408 QHGVASLDKVSPFDFNILRKVFL 476
           + G+  LD+VSP   +   KVFL
Sbjct: 582 RCGMDKLDRVSPPSLSGKDKVFL 604



 Score = 92.4 bits (228), Expect = 6e-16
 Identities = 44/89 (49%), Positives = 66/89 (74%)
 Frame = +1

Query: 4   KYPTEVSVDELLNSHLFPAIDGHKQKVMFVGYLVNCLLSSYLGQRPVENRDDYYNKRVEL 183
           K+P + SV+E ++S LFP++   KQK +++GY+V CLL SY G+R V+N+DD+ NKR+ L
Sbjct: 371 KFPPKESVEECIDSLLFPSLRERKQKALYLGYMVKCLLLSYFGRRKVDNKDDFRNKRLGL 430

Query: 184 AAELLGHQMLVSLR*FRRRMTQAI*KDLS 270
           AAEL+  +ML  ++   RRM +AI +DLS
Sbjct: 431 AAELIEKEMLAHIKNAGRRMVKAIQRDLS 459


>gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA polymerase D second
            largest subunit 2-2 [Zea mays]
          Length = 1229

 Score =  351 bits (901), Expect(4) = e-120
 Identities = 172/333 (51%), Positives = 229/333 (68%), Gaps = 14/333 (4%)
 Frame = +1

Query: 814  NEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTPYQAEKHS*QAIGHYTTSSRVRC 993
            +EG    +THCELDPSFLL L+  +IPFAN N A R  YQ+EKHS QAIG+ TT+  +R 
Sbjct: 733  SEGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRV 792

Query: 994  DTSSHQLLYPLKPLFRTLSYQCL--------------SKPQFYNGQNAIIAVNVHYAYNQ 1131
            DT SHQL YP +PLF+T+   CL              ++P+++NGQNAI+AVNVH  +NQ
Sbjct: 793  DTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQ 852

Query: 1132 EDSLVANHASIDRGLFRSVHFRTYTSETEFDENLSQTSTRLSLDLGKPQNKTLKIEKLDD 1311
            EDSLV N AS++RG+FR+ H R+Y ++ E  +   +   +  +D GK ++K  +++ LDD
Sbjct: 853  EDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDD 912

Query: 1312 DGLPHIDSDLYSGDVLIGKVGPQTVDSNSSLKLKQTEKGRVDQVVLASNDNSKKYARARL 1491
            DGLP++ + L + D++IGKV     D   S+KLK TEKG V +V+L++ND  K +A   L
Sbjct: 913  DGLPYVGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVVTL 970

Query: 1492 MEMRAPSLGDKFSSMHGQKGVLGFIEEQENMPFTKEAIVPDLIINLHAFPSRQTPGQLFE 1671
             ++R P LGDKFSSMHGQKGV+GF+E QEN PFT E IVPD++IN HAFP+RQTPGQL E
Sbjct: 971  RQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLE 1030

Query: 1672 CALGKAITASGVSGDATPFRSITVDYIIERLKK 1770
             ALGK I   G    ATPF + +VD I E+L +
Sbjct: 1031 AALGKGIACKGTMRYATPFTTASVDVIAEQLHR 1063



 Score = 78.2 bits (191), Expect(4) = e-120
 Identities = 50/121 (41%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
 Frame = +2

Query: 452 QHLEKGIFNGELIGICSNGDTLAHNLRVLRCKQCIDPMVEIKSDKSQREV*IFCDAGRLL 631
           Q ++K   NG  +G C N  +    LR +R    IDP VEIK DK   EV +F DAGR+L
Sbjct: 620 QRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAGRIL 679

Query: 632 RPLLLVRDQNLCINKEQLAIFKKCEKPLLYLLNYGAIELLGV-EEEDTQIACGVEILLKP 808
           RPLL+V + N  I K +   F   E     L+    IE +GV EEED Q A G+  L + 
Sbjct: 680 RPLLVVENLNK-IRKPKGRSFSFHE-----LMQQEIIEFIGVEEEEDIQCAWGIRHLFES 733

Query: 809 Q 811
           +
Sbjct: 734 E 734



 Score = 51.6 bits (122), Expect(4) = e-120
 Identities = 26/70 (37%), Positives = 42/70 (60%)
 Frame = +3

Query: 267 FRNPSYWGRVCFITTSDGENYELVKNLAVISIACVTLDEEPNLDHLEQHGVASLDKVSPF 446
           + NPSYW ++CF++T DGEN  LVKNLAV +I    +  +P ++     G++ L+ +   
Sbjct: 559 YPNPSYWEKLCFMSTPDGENCGLVKNLAVTAIVSSRV-MQPLIESFISCGMSKLNDIPTE 617

Query: 447 DFNILRKVFL 476
               + K+FL
Sbjct: 618 HIQRMDKIFL 627



 Score = 24.6 bits (52), Expect(4) = e-120
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 1886 GYEQWGREQMYSGRT 1930
            GY +WG E + +GRT
Sbjct: 1065 GYSRWGSENVLNGRT 1079



 Score = 84.0 bits (206), Expect = 2e-13
 Identities = 37/90 (41%), Positives = 61/90 (67%)
 Frame = +1

Query: 1   TKYPTEVSVDELLNSHLFPAIDGHKQKVMFVGYLVNCLLSSYLGQRPVENRDDYYNKRVE 180
           +++P   S D+ +   LFP I G++ K +F+GY+V CLL ++ G+R  +N+DD+ NKR++
Sbjct: 393 SRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLD 452

Query: 181 LAAELLGHQMLVSLR*FRRRMTQAI*KDLS 270
           L  ELLG ++   LR   +RM +AI +DL+
Sbjct: 453 LPGELLGRELRAQLRLAEKRMVKAIQRDLN 482


>tpg|DAA35758.1| TPA: putative DNA-directed RNA polymerase subunit family protein [Zea
            mays]
          Length = 1063

 Score =  351 bits (901), Expect(3) = e-120
 Identities = 172/333 (51%), Positives = 229/333 (68%), Gaps = 14/333 (4%)
 Frame = +1

Query: 814  NEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTPYQAEKHS*QAIGHYTTSSRVRC 993
            +EG    +THCELDPSFLL L+  +IPFAN N A R  YQ+EKHS QAIG+ TT+  +R 
Sbjct: 733  SEGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRV 792

Query: 994  DTSSHQLLYPLKPLFRTLSYQCL--------------SKPQFYNGQNAIIAVNVHYAYNQ 1131
            DT SHQL YP +PLF+T+   CL              ++P+++NGQNAI+AVNVH  +NQ
Sbjct: 793  DTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQ 852

Query: 1132 EDSLVANHASIDRGLFRSVHFRTYTSETEFDENLSQTSTRLSLDLGKPQNKTLKIEKLDD 1311
            EDSLV N AS++RG+FR+ H R+Y ++ E  +   +   +  +D GK ++K  +++ LDD
Sbjct: 853  EDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDD 912

Query: 1312 DGLPHIDSDLYSGDVLIGKVGPQTVDSNSSLKLKQTEKGRVDQVVLASNDNSKKYARARL 1491
            DGLP++ + L + D++IGKV     D   S+KLK TEKG V +V+L++ND  K +A   L
Sbjct: 913  DGLPYVGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVVTL 970

Query: 1492 MEMRAPSLGDKFSSMHGQKGVLGFIEEQENMPFTKEAIVPDLIINLHAFPSRQTPGQLFE 1671
             ++R P LGDKFSSMHGQKGV+GF+E QEN PFT E IVPD++IN HAFP+RQTPGQL E
Sbjct: 971  RQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLE 1030

Query: 1672 CALGKAITASGVSGDATPFRSITVDYIIERLKK 1770
             ALGK I   G    ATPF + +VD I E+L +
Sbjct: 1031 AALGKGIACKGTMRYATPFTTASVDVIAEQLHR 1063



 Score = 78.2 bits (191), Expect(3) = e-120
 Identities = 50/121 (41%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
 Frame = +2

Query: 452 QHLEKGIFNGELIGICSNGDTLAHNLRVLRCKQCIDPMVEIKSDKSQREV*IFCDAGRLL 631
           Q ++K   NG  +G C N  +    LR +R    IDP VEIK DK   EV +F DAGR+L
Sbjct: 620 QRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAGRIL 679

Query: 632 RPLLLVRDQNLCINKEQLAIFKKCEKPLLYLLNYGAIELLGV-EEEDTQIACGVEILLKP 808
           RPLL+V + N  I K +   F   E     L+    IE +GV EEED Q A G+  L + 
Sbjct: 680 RPLLVVENLNK-IRKPKGRSFSFHE-----LMQQEIIEFIGVEEEEDIQCAWGIRHLFES 733

Query: 809 Q 811
           +
Sbjct: 734 E 734



 Score = 54.7 bits (130), Expect(3) = e-120
 Identities = 27/70 (38%), Positives = 43/70 (61%)
 Frame = +3

Query: 267 FRNPSYWGRVCFITTSDGENYELVKNLAVISIACVTLDEEPNLDHLEQHGVASLDKVSPF 446
           + NPSYWG++CF++T DGEN  LVKNLAV +I    +  +P ++     G++ L+ +   
Sbjct: 559 YPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRV-MQPLIESFISCGMSKLNDIPTE 617

Query: 447 DFNILRKVFL 476
               + K+FL
Sbjct: 618 HIQRMDKIFL 627



 Score = 84.0 bits (206), Expect = 2e-13
 Identities = 37/90 (41%), Positives = 61/90 (67%)
 Frame = +1

Query: 1   TKYPTEVSVDELLNSHLFPAIDGHKQKVMFVGYLVNCLLSSYLGQRPVENRDDYYNKRVE 180
           +++P   S D+ +   LFP I G++ K +F+GY+V CLL ++ G+R  +N+DD+ NKR++
Sbjct: 393 SRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLD 452

Query: 181 LAAELLGHQMLVSLR*FRRRMTQAI*KDLS 270
           L  ELLG ++   LR   +RM +AI +DL+
Sbjct: 453 LPGELLGRELRAQLRLAEKRMVKAIQRDLN 482


>ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor]
            gi|241922081|gb|EER95225.1| hypothetical protein
            SORBIDRAFT_01g042100 [Sorghum bicolor]
          Length = 1228

 Score =  350 bits (897), Expect(4) = e-120
 Identities = 172/333 (51%), Positives = 228/333 (68%), Gaps = 14/333 (4%)
 Frame = +1

Query: 814  NEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTPYQAEKHS*QAIGHYTTSSRVRC 993
            +EG    +THCELDPSFLL L+  +IPFAN N A R  YQ+EKHS QAIG+ TT+  +R 
Sbjct: 732  SEGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRV 791

Query: 994  DTSSHQLLYPLKPLFRTLSYQCLSK--------------PQFYNGQNAIIAVNVHYAYNQ 1131
            DT SHQL YP +PLF+T+   CL +              P+++NGQNAI+AVNVH  +NQ
Sbjct: 792  DTLSHQLYYPQRPLFKTVIADCLGRSDYTTFGRKDDFMRPEYFNGQNAIVAVNVHQGFNQ 851

Query: 1132 EDSLVANHASIDRGLFRSVHFRTYTSETEFDENLSQTSTRLSLDLGKPQNKTLKIEKLDD 1311
            EDSLV N AS++RG+FR+ H R+Y ++ E  +   +   +  +D GK ++K  +++ LDD
Sbjct: 852  EDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDD 911

Query: 1312 DGLPHIDSDLYSGDVLIGKVGPQTVDSNSSLKLKQTEKGRVDQVVLASNDNSKKYARARL 1491
            DGLP+I + L + D++IGKV     D   S+KLK TEKG V +V+L++ND  K +A   L
Sbjct: 912  DGLPYIGASLQTNDIVIGKVSESGEDH--SIKLKHTEKGMVQKVLLSANDEGKNFAVVTL 969

Query: 1492 MEMRAPSLGDKFSSMHGQKGVLGFIEEQENMPFTKEAIVPDLIINLHAFPSRQTPGQLFE 1671
             ++R P LGDKFSSMHGQKGV+GF+E QEN PFT + IVPD++IN HAFP+RQTPGQL E
Sbjct: 970  RQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHKGIVPDIVINPHAFPTRQTPGQLLE 1029

Query: 1672 CALGKAITASGVSGDATPFRSITVDYIIERLKK 1770
             ALGK I   G    ATPF + +VD I E+L +
Sbjct: 1030 AALGKGIACKGTMRYATPFTTASVDVIAEQLHR 1062



 Score = 75.5 bits (184), Expect(4) = e-120
 Identities = 48/127 (37%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
 Frame = +2

Query: 452 QHLEKGIFNGELIGICSNGDTLAHNLRVLRCKQCIDPMVEIKSDKSQREV*IFCDAGRLL 631
           Q ++K   NG  +G C +  +    LR +R    IDP VEIK DK  +EV +F DAGR+L
Sbjct: 619 QRMDKIFLNGNWVGSCKDSASFVFRLRCMRRSSLIDPQVEIKRDKHHKEVRVFSDAGRIL 678

Query: 632 RPLLLVRDQNLCINKEQLAIFKKCEKP------LLYLLNYGAIELLGV-EEEDTQIACGV 790
           RPLL+V +             KK  KP         L+    IE +GV EEED Q A G+
Sbjct: 679 RPLLVVEN------------LKKIRKPKGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGI 726

Query: 791 EILLKPQ 811
             L + +
Sbjct: 727 RHLFESE 733



 Score = 54.7 bits (130), Expect(4) = e-120
 Identities = 27/70 (38%), Positives = 43/70 (61%)
 Frame = +3

Query: 267 FRNPSYWGRVCFITTSDGENYELVKNLAVISIACVTLDEEPNLDHLEQHGVASLDKVSPF 446
           + NPSYWG++CF++T DGEN  LVKNLAV +I    +  +P ++     G++ L+ +   
Sbjct: 558 YPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRV-VQPLIESFISCGMSKLNDIPTE 616

Query: 447 DFNILRKVFL 476
               + K+FL
Sbjct: 617 HIQRMDKIFL 626



 Score = 25.0 bits (53), Expect(4) = e-120
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 1886 GYEQWGREQMYSGRTSSPREQM 1951
            GY +WG E + +GRT    + +
Sbjct: 1064 GYSRWGTENVLNGRTGERMQSL 1085



 Score = 83.6 bits (205), Expect = 3e-13
 Identities = 37/90 (41%), Positives = 61/90 (67%)
 Frame = +1

Query: 1   TKYPTEVSVDELLNSHLFPAIDGHKQKVMFVGYLVNCLLSSYLGQRPVENRDDYYNKRVE 180
           +++P   S D+ +   LFP I G++ K +F+GY+V CLL ++ G+R  +N+DD+ NKR++
Sbjct: 392 SRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLD 451

Query: 181 LAAELLGHQMLVSLR*FRRRMTQAI*KDLS 270
           L  ELLG ++   LR   +RM +AI +DL+
Sbjct: 452 LPGELLGRELRAHLRLAEKRMVKAIQRDLN 481


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score =  335 bits (860), Expect(4) = e-118
 Identities = 175/343 (51%), Positives = 229/343 (66%), Gaps = 14/343 (4%)
 Frame = +1

Query: 784  WSGNFAKASVNEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTPYQAEKHS*QAIG 963
            W   F  + V+      +THCELD SFLL L+  +IPFAN + A R  YQA+KHS QAIG
Sbjct: 697  WGIKFLLSGVDGKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 756

Query: 964  HYTTSSRVRCDTSSHQLLYPLKPLFRTLSYQCLSKP-------------QFYNGQNAIIA 1104
              TT+  +R DT SHQL YP +PLFRT++  CL KP             + YNGQNAI+A
Sbjct: 757  FPTTNPNIRVDTLSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVA 816

Query: 1105 VNVHYAYNQEDSLVANHASIDRGLFRSVHFRTYTSETEFDENLSQTSTRL-SLDLGKPQN 1281
            VNVH  YNQEDSLV N AS++RG+FRS H R+Y ++ +  E L +      +++ GK  +
Sbjct: 817  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKELLDKRRKYDDNVNFGKIPS 876

Query: 1282 KTLKIEKLDDDGLPHIDSDLYSGDVLIGKVGPQTVDSNSSLKLKQTEKGRVDQVVLASND 1461
            K  +++ LDDDG P I ++L SGD++IG+      D   S+KLK TE+G V +VVL+SND
Sbjct: 877  KIGRVDSLDDDGFPFIGANLQSGDIVIGRCAESGPDH--SIKLKHTERGMVQKVVLSSND 934

Query: 1462 NSKKYARARLMEMRAPSLGDKFSSMHGQKGVLGFIEEQENMPFTKEAIVPDLIINLHAFP 1641
              K +A   L ++R+P LGDKFSSMHGQKGVLGF+E QEN PFT++ IVPD++IN H+FP
Sbjct: 935  EGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHSFP 994

Query: 1642 SRQTPGQLFECALGKAITASGVSGDATPFRSITVDYIIERLKK 1770
            SRQTPGQL E ALGK I   G    ATPF +++V+ I  +L +
Sbjct: 995  SRQTPGQLLEAALGKGIACGGSMKYATPFSTLSVEAITNQLHR 1037



 Score = 76.3 bits (186), Expect(4) = e-118
 Identities = 47/115 (40%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
 Frame = +2

Query: 461 EKGIFNGELIGICSNGDTLAHNLRVLRCKQCIDPMVEIKSDKSQREV*IFCDAGRLLRPL 640
           +K   NGE +G+C +       LR LR ++ +   VEIK D+ Q+EV IF DAGR+LRPL
Sbjct: 595 DKVFLNGEWVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEVRIFSDAGRILRPL 654

Query: 641 LLVRDQNLCINKEQLAIFKKCEKPLLYLLNYGAIELLGV-EEEDTQIACGVEILL 802
           L+V+      N  ++  FK        LL+ G IE +G  EEED   A G++ LL
Sbjct: 655 LVVQ------NLHKIEAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKFLL 703



 Score = 59.3 bits (142), Expect(4) = e-118
 Identities = 32/70 (45%), Positives = 43/70 (61%)
 Frame = +3

Query: 267 FRNPSYWGRVCFITTSDGENYELVKNLAVISIACVTLDEEPNLDHLEQHGVASLDKVSPF 446
           F +PS+WGRVCF++T DGEN  LVKNLA   +  V +  EP +D L   G+  + + S  
Sbjct: 531 FPHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVNI-LEPLIDKLIARGMEKVPEDSHS 589

Query: 447 DFNILRKVFL 476
           D +   KVFL
Sbjct: 590 DLDEKDKVFL 599



 Score = 27.3 bits (59), Expect(4) = e-118
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 1886 GYEQWGREQMYSGRTSS-PREQMYSGRT 1966
            G+ +WG E++Y+GRT    R  ++ G T
Sbjct: 1039 GFSRWGNERVYNGRTGEMVRSLIFMGPT 1066



 Score = 73.9 bits (180), Expect = 2e-10
 Identities = 40/89 (44%), Positives = 55/89 (61%)
 Frame = +1

Query: 1   TKYPTEVSVDELLNSHLFPAIDGHKQKVMFVGYLVNCLLSSYLGQRPVENRDDYYNKRVE 180
           T++P   + D  L  +LFP +   +QK  F+GY+V CLL +Y GQR   N D + NKR E
Sbjct: 366 TRFPPGENEDFFL-LYLFPTLHSLRQKARFLGYMVKCLLQAYNGQRKCNNWDSFRNKRFE 424

Query: 181 LAAELLGHQMLVSLR*FRRRMTQAI*KDL 267
           LA ELL  ++ V +   RRRM +A+ KDL
Sbjct: 425 LAKELLERELKVHIAHARRRMAKALQKDL 453


>ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
            [Brachypodium distachyon]
          Length = 1213

 Score =  344 bits (883), Expect(3) = e-117
 Identities = 170/325 (52%), Positives = 227/325 (69%), Gaps = 13/325 (4%)
 Frame = +1

Query: 835  FTHCELDPSFLLSLNASLIPFANRNLATRTPYQAEKHS*QAIGHYTTSSRVRCDTSSHQL 1014
            +THCELD SFLL L+  LIPFAN N A R  YQ+EKHS QAIG+ TT+   R DT SHQL
Sbjct: 725  YTHCELDLSFLLGLSCGLIPFANHNFARRVLYQSEKHSQQAIGYSTTNPLTRVDTHSHQL 784

Query: 1015 LYPLKPLFRTLSYQCL-------------SKPQFYNGQNAIIAVNVHYAYNQEDSLVANH 1155
             YP +PLF+T++  C+             ++P+++NGQNAI+AVNVH  +NQEDSLV N 
Sbjct: 785  YYPQRPLFKTVTADCIGRSDYTIGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNR 844

Query: 1156 ASIDRGLFRSVHFRTYTSETEFDENLSQTSTRLSLDLGKPQNKTLKIEKLDDDGLPHIDS 1335
            AS++RG+FR+ H R+Y +E E  E + +   +  +D GK Q+K  +++ LDDDGLP++ +
Sbjct: 845  ASLERGMFRTEHIRSYKAEVETKEPIKRLKLKEKVDFGKMQSKRGRVDNLDDDGLPYVGA 904

Query: 1336 DLYSGDVLIGKVGPQTVDSNSSLKLKQTEKGRVDQVVLASNDNSKKYARARLMEMRAPSL 1515
             L SGD++IGKV     D   S+K+K TEKG V +V+L++ND  K +A   L ++R+P +
Sbjct: 905  SLQSGDIVIGKVSESGEDH--SIKMKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCV 962

Query: 1516 GDKFSSMHGQKGVLGFIEEQENMPFTKEAIVPDLIINLHAFPSRQTPGQLFECALGKAIT 1695
            GDKFSSMHGQKGV+GF+E QEN PFT + IVPD++IN HAFP+RQTPGQL E ALGK I 
Sbjct: 963  GDKFSSMHGQKGVIGFLESQENFPFTCQGIVPDVVINPHAFPTRQTPGQLLEAALGKGIA 1022

Query: 1696 ASGVSGDATPFRSITVDYIIERLKK 1770
              G    ATPF   +++ I E+L K
Sbjct: 1023 LGGAMRYATPFTPASLEVISEQLHK 1047



 Score = 69.7 bits (169), Expect(3) = e-117
 Identities = 51/126 (40%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
 Frame = +2

Query: 458 LEKGIFNGELIGICSNGDTLAHNLRVLRCKQCIDPMVEIKSDKSQ--REV*IFCDAGRLL 631
           ++K   NG+ IG C++  +    LR +R    IDP VEIK DK Q   EV +F DAGR+L
Sbjct: 604 MDKIFLNGDWIGSCTDPASFVMRLRCMRRANLIDPQVEIKRDKHQFPGEVRVFSDAGRIL 663

Query: 632 RPLLLVRDQN-LCINKEQLAIFKKCEKPLLYLLNYGAIELLGV-EEEDTQIACGVEILLK 805
           RPLL+V + N +  +K++   F+        LL    IE +GV EEED Q A G+  L  
Sbjct: 664 RPLLVVENLNKIRKSKDRHYTFQA-------LLQQEIIEYIGVEEEEDIQCAWGIRHLFP 716

Query: 806 PQ*MKV 823
               KV
Sbjct: 717 SSGEKV 722



 Score = 60.8 bits (146), Expect(3) = e-117
 Identities = 30/70 (42%), Positives = 45/70 (64%)
 Frame = +3

Query: 267 FRNPSYWGRVCFITTSDGENYELVKNLAVISIACVTLDEEPNLDHLEQHGVASLDKVSPF 446
           + NPSYWG++CF++T DGEN  LVKNLAV +I    +  +P +D     G+  LD++S  
Sbjct: 541 YPNPSYWGKMCFMSTPDGENCGLVKNLAVTAIVSSRV-VQPLIDRFVSCGMNKLDEISAK 599

Query: 447 DFNILRKVFL 476
           +   + K+FL
Sbjct: 600 EIPKMDKIFL 609



 Score = 78.6 bits (192), Expect = 1e-11
 Identities = 35/90 (38%), Positives = 58/90 (64%)
 Frame = +1

Query: 1   TKYPTEVSVDELLNSHLFPAIDGHKQKVMFVGYLVNCLLSSYLGQRPVENRDDYYNKRVE 180
           +K+P      + +  +LFP I G++ K  F+GY+V CLL ++ G+R  +N+DD+ NKR+E
Sbjct: 375 SKFPPAEPFTDYVAKYLFPGISGNRNKAFFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLE 434

Query: 181 LAAELLGHQMLVSLR*FRRRMTQAI*KDLS 270
           L  +LLG ++   LR   R M +A+ +DL+
Sbjct: 435 LPGQLLGRELRAHLRHAERLMVKAMQRDLN 464


>ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
            [Brachypodium distachyon]
          Length = 1213

 Score =  342 bits (876), Expect(3) = e-117
 Identities = 169/325 (52%), Positives = 225/325 (69%), Gaps = 13/325 (4%)
 Frame = +1

Query: 835  FTHCELDPSFLLSLNASLIPFANRNLATRTPYQAEKHS*QAIGHYTTSSRVRCDTSSHQL 1014
            +THCELD SFLL L+  LIPFAN N A R  YQ+EKHS QAIG+ TT+   R DT SHQL
Sbjct: 725  YTHCELDLSFLLGLSCGLIPFANHNFARRVLYQSEKHSQQAIGYSTTNPLTRVDTHSHQL 784

Query: 1015 LYPLKPLFRTLSYQCL-------------SKPQFYNGQNAIIAVNVHYAYNQEDSLVANH 1155
             YP +PLF+T++  C+             ++P+++NGQNAI+AVNVH  +NQEDSLV N 
Sbjct: 785  YYPQRPLFKTVTADCIGRSDYTIGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNR 844

Query: 1156 ASIDRGLFRSVHFRTYTSETEFDENLSQTSTRLSLDLGKPQNKTLKIEKLDDDGLPHIDS 1335
            AS++RG+FR+ H R+Y +E E  E   +   +  +D GK Q+K  +++ LDDDGLP++ +
Sbjct: 845  ASLERGMFRTEHIRSYKAEVETKEPTKRLKLKEKVDFGKMQSKRGRVDNLDDDGLPYVGA 904

Query: 1336 DLYSGDVLIGKVGPQTVDSNSSLKLKQTEKGRVDQVVLASNDNSKKYARARLMEMRAPSL 1515
             L SGD++IGKV     D   S+K+K TEKG   +V+L++ND  K +A   L ++R+P +
Sbjct: 905  SLQSGDIVIGKVSESGEDH--SIKMKHTEKGMAQRVLLSANDEGKNFAVVTLRQVRSPCV 962

Query: 1516 GDKFSSMHGQKGVLGFIEEQENMPFTKEAIVPDLIINLHAFPSRQTPGQLFECALGKAIT 1695
            GDKFSSMHGQKGV+GF+E QEN PFT + IVPD++IN HAFP+RQTPGQL E ALGK I 
Sbjct: 963  GDKFSSMHGQKGVIGFLESQENFPFTCQGIVPDVVINPHAFPTRQTPGQLLEAALGKGIA 1022

Query: 1696 ASGVSGDATPFRSITVDYIIERLKK 1770
              G    ATPF   +++ I E+L K
Sbjct: 1023 LGGAMRYATPFTPASLEVISEQLHK 1047



 Score = 72.4 bits (176), Expect(3) = e-117
 Identities = 52/127 (40%), Positives = 68/127 (53%), Gaps = 5/127 (3%)
 Frame = +2

Query: 458 LEKGIFNGELIGICSNGDTLAHNLRVLRCKQCIDPMVEIKSDKSQ--REV*IFCDAGRLL 631
           ++K   NG+ IG C++  +    LR +R    IDP VEIK DK Q   EV +F DAGR+L
Sbjct: 604 MDKIFLNGDWIGSCTDPASFVMRLRCMRRANLIDPQVEIKRDKHQFPGEVRVFSDAGRIL 663

Query: 632 RPLLLVRDQNLCINKEQLAIFKKCEKPLLY--LLNYGAIELLGV-EEEDTQIACGVEILL 802
           RPLL+V + N         I K  ++P  +  LL    IE +GV EEED Q A G+  L 
Sbjct: 664 RPLLVVENLN--------KIRKSKDRPYTFQALLQQEIIEYIGVEEEEDIQCAWGIRHLF 715

Query: 803 KPQ*MKV 823
                KV
Sbjct: 716 PSSGEKV 722



 Score = 60.8 bits (146), Expect(3) = e-117
 Identities = 30/70 (42%), Positives = 45/70 (64%)
 Frame = +3

Query: 267 FRNPSYWGRVCFITTSDGENYELVKNLAVISIACVTLDEEPNLDHLEQHGVASLDKVSPF 446
           + NPSYWG++CF++T DGEN  LVKNLAV +I    +  +P +D     G+  LD++S  
Sbjct: 541 YPNPSYWGKMCFMSTPDGENCGLVKNLAVTAIVSSRV-VQPLIDRFVSCGMNKLDEISAK 599

Query: 447 DFNILRKVFL 476
           +   + K+FL
Sbjct: 600 EIPKMDKIFL 609



 Score = 77.8 bits (190), Expect = 2e-11
 Identities = 35/90 (38%), Positives = 58/90 (64%)
 Frame = +1

Query: 1   TKYPTEVSVDELLNSHLFPAIDGHKQKVMFVGYLVNCLLSSYLGQRPVENRDDYYNKRVE 180
           +K+P      + +  +LFP I G++ K  F+GY+V CLL ++ G+R  +N+DD+ NKR+E
Sbjct: 375 SKFPPAEPFTDYVAKYLFPGISGNRNKSFFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLE 434

Query: 181 LAAELLGHQMLVSLR*FRRRMTQAI*KDLS 270
           L  +LLG ++   LR   R M +A+ +DL+
Sbjct: 435 LPGQLLGRELRAHLRHAERLMVKAMQRDLN 464


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1181

 Score =  343 bits (881), Expect(4) = e-117
 Identities = 180/333 (54%), Positives = 231/333 (69%), Gaps = 4/333 (1%)
 Frame = +1

Query: 784  WSGNFAKASVNEGLFP-PFTHCELDPSFLLSLNASLIPFANRNLATRTPYQAEKHS*QAI 960
            W   F  A + EG  P  ++HCELD SFLL L+  +IPFAN + A R  YQA+KHS QAI
Sbjct: 686  WGIKFLLADI-EGKQPMKYSHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAI 744

Query: 961  GHYTTSSRVRCDTSSHQLLYPLKPLFRTLSYQCL--SKPQFYNGQNAIIAVNVHYAYNQE 1134
            G  TT+  +R DT SHQL YP +PLFRT+   CL   KP+ +NGQNAI+AVNVH  YNQE
Sbjct: 745  GFSTTNPNIRVDTLSHQLHYPQRPLFRTMISDCLVLPKPELFNGQNAIVAVNVHLGYNQE 804

Query: 1135 DSLVANHASIDRGLFRSVHFRTYTSETEFDENLSQT-STRLSLDLGKPQNKTLKIEKLDD 1311
            DSLV N AS++RG+FRS H R+Y +E +  E   +   +  S+  GK Q+K  +++ LDD
Sbjct: 805  DSLVMNRASLERGMFRSEHIRSYKAEVDNKELTDKRRKSEDSITFGKIQSKIGRVDSLDD 864

Query: 1312 DGLPHIDSDLYSGDVLIGKVGPQTVDSNSSLKLKQTEKGRVDQVVLASNDNSKKYARARL 1491
            DG P I +++ SGD++IGK      D   S+KLK TE+G V +VVL+SND  K +A   L
Sbjct: 865  DGFPFIGANMQSGDIVIGKCAESGADH--SVKLKHTERGMVQKVVLSSNDEGKNFAVVSL 922

Query: 1492 MEMRAPSLGDKFSSMHGQKGVLGFIEEQENMPFTKEAIVPDLIINLHAFPSRQTPGQLFE 1671
             ++R+P LGDKFSSMHGQKGVLGF+E QEN PFT + +VPD++IN HAFPSRQTPGQL E
Sbjct: 923  RQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTPGQLLE 982

Query: 1672 CALGKAITASGVSGDATPFRSITVDYIIERLKK 1770
             ALGK I   G    ATPF +++VD II++L +
Sbjct: 983  AALGKGIACGGSKRYATPFSTLSVDDIIDQLHR 1015



 Score = 74.7 bits (182), Expect(4) = e-117
 Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
 Frame = +2

Query: 464 KGIFNGELIGICSNGDTLAHNLRVLRCKQCIDPMVEIKSDKSQREV*IFCDAGRLLRPLL 643
           K   NGE +G+C +       LR +R ++ +   VEIK D+ QREV IF DAGR+LRPLL
Sbjct: 585 KVFLNGEWVGVCEDSCLFVGELRSMRRRRELPYQVEIKRDEQQREVRIFSDAGRILRPLL 644

Query: 644 LVRDQNLCINKEQLAIFKKCEKPLLYLLNYGAIELLGV-EEEDTQIACGVEILL 802
           +V       N +++  FK        LL+ G IE +G  EEED   A G++ LL
Sbjct: 645 VVE------NLDKIKAFKGGNYIFTSLLDKGIIEFIGTEEEEDCCTAWGIKFLL 692



 Score = 52.4 bits (124), Expect(4) = e-117
 Identities = 29/70 (41%), Positives = 40/70 (57%)
 Frame = +3

Query: 267 FRNPSYWGRVCFITTSDGENYELVKNLAVISIACVTLDEEPNLDHLEQHGVASLDKVSPF 446
           + +PS+WGRVCF++T DGEN  LVKNLAV  +    + E   +D L   G+  L   +  
Sbjct: 520 YPHPSHWGRVCFLSTPDGENCGLVKNLAVTGVVSTNISES-LVDKLFDSGMEKLVDDTYT 578

Query: 447 DFNILRKVFL 476
             +   KVFL
Sbjct: 579 KLDGKHKVFL 588



 Score = 25.0 bits (53), Expect(4) = e-117
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 1889 YEQWGREQMYSGRTSS-PREQMYSGRT 1966
            + +WG E++Y+GRT    R  ++ G T
Sbjct: 1018 FSRWGNERVYNGRTGEMVRSLIFMGPT 1044



 Score = 84.3 bits (207), Expect = 2e-13
 Identities = 37/89 (41%), Positives = 62/89 (69%)
 Frame = +1

Query: 1   TKYPTEVSVDELLNSHLFPAIDGHKQKVMFVGYLVNCLLSSYLGQRPVENRDDYYNKRVE 180
           T++P + S+++ ++++LFP ++  + K  F+GY+V CLL +Y G R  +NRD + NKR E
Sbjct: 354 TRFPPKESIEDAISAYLFPRLNSRRHKARFLGYMVKCLLEAYTGHRKCDNRDSFRNKRFE 413

Query: 181 LAAELLGHQMLVSLR*FRRRMTQAI*KDL 267
           LA+ELL  ++ V +    RRMT+A+ +DL
Sbjct: 414 LASELLERELKVHVSHALRRMTKALQRDL 442


>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score =  347 bits (890), Expect(4) = e-117
 Identities = 178/326 (54%), Positives = 227/326 (69%), Gaps = 14/326 (4%)
 Frame = +1

Query: 835  FTHCELDPSFLLSLNASLIPFANRNLATRTPYQAEKHS*QAIGHYTTSSRVRCDTSSHQL 1014
            +THCELD SFLL L+ SL+PFAN + A R  YQ++KHS QAIG  TT+  +R DT SHQL
Sbjct: 716  YTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQL 775

Query: 1015 LYPLKPLFRTLSYQCLSKP-------------QFYNGQNAIIAVNVHYAYNQEDSLVANH 1155
             YP KPLFRT++  CL KP             +FYNGQNAI+AVNVH  YNQEDSLV N 
Sbjct: 776  HYPQKPLFRTMTSDCLGKPDHSLGQSKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNR 835

Query: 1156 ASIDRGLFRSVHFRTYTSETEFDENLSQTSTRLSL-DLGKPQNKTLKIEKLDDDGLPHID 1332
            AS+ RG+FRS H R+Y SE +  E+  +      + +  K Q+K  +++ LDDDG P++ 
Sbjct: 836  ASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFPYVG 895

Query: 1333 SDLYSGDVLIGKVGPQTVDSNSSLKLKQTEKGRVDQVVLASNDNSKKYARARLMEMRAPS 1512
            ++L SGD++IGK      D+  S+KLK TE+G V +VVL+SND  K +A   L ++R+P 
Sbjct: 896  ANLQSGDIIIGKCAESGADN--SVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPV 953

Query: 1513 LGDKFSSMHGQKGVLGFIEEQENMPFTKEAIVPDLIINLHAFPSRQTPGQLFECALGKAI 1692
            LGDKFSSMHGQKGVLGF+E QEN PFT++ IVPD++IN HAFPSRQTPGQL E ALGK I
Sbjct: 954  LGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 1013

Query: 1693 TASGVSGDATPFRSITVDYIIERLKK 1770
               G+   ATPF + +VD I E+L +
Sbjct: 1014 ACGGILKQATPFSTPSVDAITEQLHR 1039



 Score = 72.8 bits (177), Expect(4) = e-117
 Identities = 47/115 (40%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
 Frame = +2

Query: 458 LEKGIFNGELIGICSNGDTLAHNLRVLRCKQCIDPMVEIKSDKSQREV*IFCDAGRLLRP 637
           ++K + NG+ +G+C +  +    LR  R +  +   VEIK D+SQ EV I+ DAGR+LRP
Sbjct: 597 MDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQSQHEVRIYSDAGRILRP 656

Query: 638 LLLVRDQNLCINKEQLAIFKKCEKPLLYLLNYGAIELLG-VEEEDTQIACGVEIL 799
           LL+V       N  ++  FK        LL+ G IEL+G  EEED   A GVE L
Sbjct: 657 LLVVG------NLLKIKGFKSDRYSFQSLLDKGVIELIGPEEEEDCCTAWGVEYL 705



 Score = 47.8 bits (112), Expect(4) = e-117
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = +3

Query: 267 FRNPSYWGRVCFITTSDGENYELVKNLAVISI 362
           + +PS+WG+VCF+TT DGEN  LVKNL+V  +
Sbjct: 531 YPHPSHWGKVCFLTTPDGENCGLVKNLSVTGL 562



 Score = 27.3 bits (59), Expect(4) = e-117
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 1886 GYEQWGREQMYSGRTSS-PREQMYSGRT 1966
            G+ +WG E++Y+GRT    R  ++ G T
Sbjct: 1041 GFSRWGNERVYNGRTGEMVRSLIFMGPT 1068



 Score = 77.0 bits (188), Expect = 3e-11
 Identities = 37/88 (42%), Positives = 58/88 (65%)
 Frame = +1

Query: 4   KYPTEVSVDELLNSHLFPAIDGHKQKVMFVGYLVNCLLSSYLGQRPVENRDDYYNKRVEL 183
           ++P   S+ E L  ++FP I G  +K  F+ Y+V  LL +Y G+R  +NRDD+ NKR+EL
Sbjct: 366 QFPPSESMQECLEMYVFPGISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRLEL 425

Query: 184 AAELLGHQMLVSLR*FRRRMTQAI*KDL 267
           A+ELL  ++ V +   R+RM +A+ +DL
Sbjct: 426 ASELLDRELKVHVAHARKRMAKALQRDL 453


>emb|CAJ86030.1| B0414F07.4 [Oryza sativa Indica Group]
          Length = 1343

 Score =  340 bits (871), Expect(4) = e-116
 Identities = 173/329 (52%), Positives = 228/329 (69%), Gaps = 17/329 (5%)
 Frame = +1

Query: 835  FTHCELDPSFLLSLNASLIPFANRNLATRTPYQAEKHS*QAIGHYTTSSRVRCDTSSHQL 1014
            +THCELD SFLL L+  +IPFAN N A R  YQ+EKHS QAIG+ TT+  +R DT SHQL
Sbjct: 852  YTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQL 911

Query: 1015 LYPLKPLFRTLSYQCL-------------SKPQFYNGQNAIIAVNVHYAYNQEDSLVANH 1155
             YP +PLF+T+   C+             ++P+++NGQNAI+AVNVH  +NQEDSLV N 
Sbjct: 912  YYPQRPLFKTVIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNR 971

Query: 1156 ASIDRGLFRSVHFRTYTSETEFDENLSQTSTRLSL----DLGKPQNKTLKIEKLDDDGLP 1323
            AS++RG+FR+ HFR Y +E E ++     + RL +    D GK Q+K  +++ LDDDGLP
Sbjct: 972  ASLERGMFRTEHFRNYKAEVE-NKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLP 1030

Query: 1324 HIDSDLYSGDVLIGKVGPQTVDSNSSLKLKQTEKGRVDQVVLASNDNSKKYARARLMEMR 1503
            ++ + L SGD++IGKV     D   S+KLK TEKG V +V+L++ND  K +A   L ++R
Sbjct: 1031 YVGASLQSGDIVIGKVSESGEDH--SIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVR 1088

Query: 1504 APSLGDKFSSMHGQKGVLGFIEEQENMPFTKEAIVPDLIINLHAFPSRQTPGQLFECALG 1683
            +P LGDKFSSMHGQKGV+GF+E QEN PFT + IVPD++IN HAFP+RQTPGQL E ALG
Sbjct: 1089 SPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALG 1148

Query: 1684 KAITASGVSGDATPFRSITVDYIIERLKK 1770
            K I   G    ATPF + + D I ++L K
Sbjct: 1149 KGIALGGTMRYATPFTTASFDVITDQLHK 1177



 Score = 75.5 bits (184), Expect(4) = e-116
 Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
 Frame = +2

Query: 458  LEKGIFNGELIGICSNGDTLAHNLRVLRCKQCIDPMVEIKSDKSQREV*IFCDAGRLLRP 637
            ++K   NG+ +G CS+  +    LR +R    IDP VEIK DK QREV +F DAGR+LRP
Sbjct: 712  MDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKWDKHQREVRVFSDAGRILRP 771

Query: 638  LLLVRDQNLCINKEQLAIFKKCEKPLLYLLNYGAIELLGV-EEEDTQIACGVEILLKPQ 811
            LL+V + N      ++   K       +L+    IE +GV EEED + A G+  L + +
Sbjct: 772  LLVVENLN------KIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESE 824



 Score = 52.8 bits (125), Expect(4) = e-116
 Identities = 27/70 (38%), Positives = 41/70 (58%)
 Frame = +3

Query: 267 FRNPSYWGRVCFITTSDGENYELVKNLAVISIACVTLDEEPNLDHLEQHGVASLDKVSPF 446
           + NPSYWG++CF++T DGEN  LVKNLAV +     +   P +D     G+  L ++   
Sbjct: 649 YPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRV-APPLIDRFISCGMNKLHEIPTE 707

Query: 447 DFNILRKVFL 476
           +   + K+FL
Sbjct: 708 EVPRMDKIFL 717



 Score = 24.3 bits (51), Expect(4) = e-116
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 1886 GYEQWGREQMYSGRTSSPREQMYS 1957
            G+ +WG E + +GRT    E+M+S
Sbjct: 1179 GFSRWGAESVLNGRTG---ERMHS 1199



 Score = 84.3 bits (207), Expect = 2e-13
 Identities = 36/90 (40%), Positives = 62/90 (68%)
 Frame = +1

Query: 1   TKYPTEVSVDELLNSHLFPAIDGHKQKVMFVGYLVNCLLSSYLGQRPVENRDDYYNKRVE 180
           +K+P     D+ +  +LFP+I G++ K +F+GY+V CLL ++ G+R  +N+DD+ NKR++
Sbjct: 483 SKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLD 542

Query: 181 LAAELLGHQMLVSLR*FRRRMTQAI*KDLS 270
           LA ELLG ++   +R   R M +A+ +DL+
Sbjct: 543 LAGELLGRELRAHIRHAERLMVKALQRDLN 572


>emb|CAD41847.2| OSJNBb0079B02.6 [Oryza sativa Japonica Group]
          Length = 1343

 Score =  338 bits (868), Expect(4) = e-116
 Identities = 172/329 (52%), Positives = 228/329 (69%), Gaps = 17/329 (5%)
 Frame = +1

Query: 835  FTHCELDPSFLLSLNASLIPFANRNLATRTPYQAEKHS*QAIGHYTTSSRVRCDTSSHQL 1014
            +THCELD SFLL L+  +IPFAN N A R  YQ+EKHS QAIG+ TT+  +R DT SHQL
Sbjct: 852  YTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQL 911

Query: 1015 LYPLKPLFRTLSYQCL-------------SKPQFYNGQNAIIAVNVHYAYNQEDSLVANH 1155
             YP +PLF+T+   C+             ++P+++NGQNAI+AVNVH  +NQEDS+V N 
Sbjct: 912  YYPQRPLFKTVIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSVVMNR 971

Query: 1156 ASIDRGLFRSVHFRTYTSETEFDENLSQTSTRLSL----DLGKPQNKTLKIEKLDDDGLP 1323
            AS++RG+FR+ HFR Y +E E ++     + RL +    D GK Q+K  +++ LDDDGLP
Sbjct: 972  ASLERGMFRTEHFRNYKAEVE-NKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLP 1030

Query: 1324 HIDSDLYSGDVLIGKVGPQTVDSNSSLKLKQTEKGRVDQVVLASNDNSKKYARARLMEMR 1503
            ++ + L SGD++IGKV     D   S+KLK TEKG V +V+L++ND  K +A   L ++R
Sbjct: 1031 YVGASLQSGDIVIGKVSESGEDH--SIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVR 1088

Query: 1504 APSLGDKFSSMHGQKGVLGFIEEQENMPFTKEAIVPDLIINLHAFPSRQTPGQLFECALG 1683
            +P LGDKFSSMHGQKGV+GF+E QEN PFT + IVPD++IN HAFP+RQTPGQL E ALG
Sbjct: 1089 SPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALG 1148

Query: 1684 KAITASGVSGDATPFRSITVDYIIERLKK 1770
            K I   G    ATPF + + D I ++L K
Sbjct: 1149 KGIALGGTMRYATPFTTASFDVITDQLHK 1177



 Score = 76.3 bits (186), Expect(4) = e-116
 Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
 Frame = +2

Query: 458  LEKGIFNGELIGICSNGDTLAHNLRVLRCKQCIDPMVEIKSDKSQREV*IFCDAGRLLRP 637
            ++K   NG+ +G CS+  +    LR +R    IDP VEIK DK QREV +F DAGR+LRP
Sbjct: 712  MDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSDAGRILRP 771

Query: 638  LLLVRDQNLCINKEQLAIFKKCEKPLLYLLNYGAIELLGV-EEEDTQIACGVEILLKPQ 811
            LL+V + N      ++   K       +L+    IE +GV EEED + A G+  L + +
Sbjct: 772  LLVVENLN------KIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESE 824



 Score = 52.8 bits (125), Expect(4) = e-116
 Identities = 27/70 (38%), Positives = 41/70 (58%)
 Frame = +3

Query: 267 FRNPSYWGRVCFITTSDGENYELVKNLAVISIACVTLDEEPNLDHLEQHGVASLDKVSPF 446
           + NPSYWG++CF++T DGEN  LVKNLAV +     +   P +D     G+  L ++   
Sbjct: 649 YPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRV-APPLIDRFISCGMNKLHEIPTE 707

Query: 447 DFNILRKVFL 476
           +   + K+FL
Sbjct: 708 EVPRMDKIFL 717



 Score = 24.3 bits (51), Expect(4) = e-116
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 1886 GYEQWGREQMYSGRTSSPREQMYS 1957
            G+ +WG E + +GRT    E+M+S
Sbjct: 1179 GFSRWGAESVLNGRTG---ERMHS 1199



 Score = 84.3 bits (207), Expect = 2e-13
 Identities = 36/90 (40%), Positives = 62/90 (68%)
 Frame = +1

Query: 1   TKYPTEVSVDELLNSHLFPAIDGHKQKVMFVGYLVNCLLSSYLGQRPVENRDDYYNKRVE 180
           +K+P     D+ +  +LFP+I G++ K +F+GY+V CLL ++ G+R  +N+DD+ NKR++
Sbjct: 483 SKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLD 542

Query: 181 LAAELLGHQMLVSLR*FRRRMTQAI*KDLS 270
           LA ELLG ++   +R   R M +A+ +DL+
Sbjct: 543 LAGELLGRELRAHIRHAERLMVKALQRDLN 572


>emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]
          Length = 1316

 Score =  338 bits (868), Expect(4) = e-116
 Identities = 172/329 (52%), Positives = 228/329 (69%), Gaps = 17/329 (5%)
 Frame = +1

Query: 835  FTHCELDPSFLLSLNASLIPFANRNLATRTPYQAEKHS*QAIGHYTTSSRVRCDTSSHQL 1014
            +THCELD SFLL L+  +IPFAN N A R  YQ+EKHS QAIG+ TT+  +R DT SHQL
Sbjct: 825  YTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQL 884

Query: 1015 LYPLKPLFRTLSYQCL-------------SKPQFYNGQNAIIAVNVHYAYNQEDSLVANH 1155
             YP +PLF+T+   C+             ++P+++NGQNAI+AVNVH  +NQEDS+V N 
Sbjct: 885  YYPQRPLFKTVIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSVVMNR 944

Query: 1156 ASIDRGLFRSVHFRTYTSETEFDENLSQTSTRLSL----DLGKPQNKTLKIEKLDDDGLP 1323
            AS++RG+FR+ HFR Y +E E ++     + RL +    D GK Q+K  +++ LDDDGLP
Sbjct: 945  ASLERGMFRTEHFRNYKAEVE-NKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLP 1003

Query: 1324 HIDSDLYSGDVLIGKVGPQTVDSNSSLKLKQTEKGRVDQVVLASNDNSKKYARARLMEMR 1503
            ++ + L SGD++IGKV     D   S+KLK TEKG V +V+L++ND  K +A   L ++R
Sbjct: 1004 YVGASLQSGDIVIGKVSESGEDH--SIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVR 1061

Query: 1504 APSLGDKFSSMHGQKGVLGFIEEQENMPFTKEAIVPDLIINLHAFPSRQTPGQLFECALG 1683
            +P LGDKFSSMHGQKGV+GF+E QEN PFT + IVPD++IN HAFP+RQTPGQL E ALG
Sbjct: 1062 SPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALG 1121

Query: 1684 KAITASGVSGDATPFRSITVDYIIERLKK 1770
            K I   G    ATPF + + D I ++L K
Sbjct: 1122 KGIALGGTMRYATPFTTASFDVITDQLHK 1150



 Score = 76.3 bits (186), Expect(4) = e-116
 Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
 Frame = +2

Query: 458  LEKGIFNGELIGICSNGDTLAHNLRVLRCKQCIDPMVEIKSDKSQREV*IFCDAGRLLRP 637
            ++K   NG+ +G CS+  +    LR +R    IDP VEIK DK QREV +F DAGR+LRP
Sbjct: 685  MDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSDAGRILRP 744

Query: 638  LLLVRDQNLCINKEQLAIFKKCEKPLLYLLNYGAIELLGV-EEEDTQIACGVEILLKPQ 811
            LL+V + N      ++   K       +L+    IE +GV EEED + A G+  L + +
Sbjct: 745  LLVVENLN------KIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESE 797



 Score = 52.8 bits (125), Expect(4) = e-116
 Identities = 27/70 (38%), Positives = 41/70 (58%)
 Frame = +3

Query: 267 FRNPSYWGRVCFITTSDGENYELVKNLAVISIACVTLDEEPNLDHLEQHGVASLDKVSPF 446
           + NPSYWG++CF++T DGEN  LVKNLAV +     +   P +D     G+  L ++   
Sbjct: 622 YPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRV-APPLIDRFISCGMNKLHEIPTE 680

Query: 447 DFNILRKVFL 476
           +   + K+FL
Sbjct: 681 EVPRMDKIFL 690



 Score = 24.3 bits (51), Expect(4) = e-116
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 1886 GYEQWGREQMYSGRTSSPREQMYS 1957
            G+ +WG E + +GRT    E+M+S
Sbjct: 1152 GFSRWGAESVLNGRTG---ERMHS 1172



 Score = 84.3 bits (207), Expect = 2e-13
 Identities = 36/90 (40%), Positives = 62/90 (68%)
 Frame = +1

Query: 1   TKYPTEVSVDELLNSHLFPAIDGHKQKVMFVGYLVNCLLSSYLGQRPVENRDDYYNKRVE 180
           +K+P     D+ +  +LFP+I G++ K +F+GY+V CLL ++ G+R  +N+DD+ NKR++
Sbjct: 456 SKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLD 515

Query: 181 LAAELLGHQMLVSLR*FRRRMTQAI*KDLS 270
           LA ELLG ++   +R   R M +A+ +DL+
Sbjct: 516 LAGELLGRELRAHIRHAERLMVKALQRDLN 545


>ref|NP_001054041.1| Os04g0641000 [Oryza sativa Japonica Group]
            gi|113565612|dbj|BAF15955.1| Os04g0641000, partial [Oryza
            sativa Japonica Group]
          Length = 1270

 Score =  338 bits (868), Expect(4) = e-116
 Identities = 172/329 (52%), Positives = 228/329 (69%), Gaps = 17/329 (5%)
 Frame = +1

Query: 835  FTHCELDPSFLLSLNASLIPFANRNLATRTPYQAEKHS*QAIGHYTTSSRVRCDTSSHQL 1014
            +THCELD SFLL L+  +IPFAN N A R  YQ+EKHS QAIG+ TT+  +R DT SHQL
Sbjct: 779  YTHCELDLSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQL 838

Query: 1015 LYPLKPLFRTLSYQCL-------------SKPQFYNGQNAIIAVNVHYAYNQEDSLVANH 1155
             YP +PLF+T+   C+             ++P+++NGQNAI+AVNVH  +NQEDS+V N 
Sbjct: 839  YYPQRPLFKTVIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSVVMNR 898

Query: 1156 ASIDRGLFRSVHFRTYTSETEFDENLSQTSTRLSL----DLGKPQNKTLKIEKLDDDGLP 1323
            AS++RG+FR+ HFR Y +E E ++     + RL +    D GK Q+K  +++ LDDDGLP
Sbjct: 899  ASLERGMFRTEHFRNYKAEVE-NKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLP 957

Query: 1324 HIDSDLYSGDVLIGKVGPQTVDSNSSLKLKQTEKGRVDQVVLASNDNSKKYARARLMEMR 1503
            ++ + L SGD++IGKV     D   S+KLK TEKG V +V+L++ND  K +A   L ++R
Sbjct: 958  YVGASLQSGDIVIGKVSESGEDH--SIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVR 1015

Query: 1504 APSLGDKFSSMHGQKGVLGFIEEQENMPFTKEAIVPDLIINLHAFPSRQTPGQLFECALG 1683
            +P LGDKFSSMHGQKGV+GF+E QEN PFT + IVPD++IN HAFP+RQTPGQL E ALG
Sbjct: 1016 SPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALG 1075

Query: 1684 KAITASGVSGDATPFRSITVDYIIERLKK 1770
            K I   G    ATPF + + D I ++L K
Sbjct: 1076 KGIALGGTMRYATPFTTASFDVITDQLHK 1104



 Score = 76.3 bits (186), Expect(4) = e-116
 Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
 Frame = +2

Query: 458 LEKGIFNGELIGICSNGDTLAHNLRVLRCKQCIDPMVEIKSDKSQREV*IFCDAGRLLRP 637
           ++K   NG+ +G CS+  +    LR +R    IDP VEIK DK QREV +F DAGR+LRP
Sbjct: 639 MDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSDAGRILRP 698

Query: 638 LLLVRDQNLCINKEQLAIFKKCEKPLLYLLNYGAIELLGV-EEEDTQIACGVEILLKPQ 811
           LL+V + N      ++   K       +L+    IE +GV EEED + A G+  L + +
Sbjct: 699 LLVVENLN------KIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESE 751



 Score = 52.8 bits (125), Expect(4) = e-116
 Identities = 27/70 (38%), Positives = 41/70 (58%)
 Frame = +3

Query: 267 FRNPSYWGRVCFITTSDGENYELVKNLAVISIACVTLDEEPNLDHLEQHGVASLDKVSPF 446
           + NPSYWG++CF++T DGEN  LVKNLAV +     +   P +D     G+  L ++   
Sbjct: 576 YPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRV-APPLIDRFISCGMNKLHEIPTE 634

Query: 447 DFNILRKVFL 476
           +   + K+FL
Sbjct: 635 EVPRMDKIFL 644



 Score = 24.3 bits (51), Expect(4) = e-116
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 1886 GYEQWGREQMYSGRTSSPREQMYS 1957
            G+ +WG E + +GRT    E+M+S
Sbjct: 1106 GFSRWGAESVLNGRTG---ERMHS 1126



 Score = 84.3 bits (207), Expect = 2e-13
 Identities = 36/90 (40%), Positives = 62/90 (68%)
 Frame = +1

Query: 1   TKYPTEVSVDELLNSHLFPAIDGHKQKVMFVGYLVNCLLSSYLGQRPVENRDDYYNKRVE 180
           +K+P     D+ +  +LFP+I G++ K +F+GY+V CLL ++ G+R  +N+DD+ NKR++
Sbjct: 410 SKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLD 469

Query: 181 LAAELLGHQMLVSLR*FRRRMTQAI*KDLS 270
           LA ELLG ++   +R   R M +A+ +DL+
Sbjct: 470 LAGELLGRELRAHIRHAERLMVKALQRDLN 499


>ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score =  345 bits (885), Expect(4) = e-116
 Identities = 178/329 (54%), Positives = 227/329 (68%), Gaps = 17/329 (5%)
 Frame = +1

Query: 835  FTHCELDPSFLLSLNASLIPFANRNLATRTPYQAEKHS*QAIGHYTTSSRVRCDTSSHQL 1014
            +THCELD SFLL L+ SL+PFAN + A R  YQ++KHS QAIG  TT+  +R DT SHQL
Sbjct: 713  YTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQL 772

Query: 1015 LYPLKPLFRTLSYQCLSKP----------------QFYNGQNAIIAVNVHYAYNQEDSLV 1146
             YP KPLFRT++  CL KP                +FYNGQNAI+AVNVH  YNQEDSLV
Sbjct: 773  HYPQKPLFRTMASDCLGKPDNSLGQNKISKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLV 832

Query: 1147 ANHASIDRGLFRSVHFRTYTSETEFDENLSQTSTRLSL-DLGKPQNKTLKIEKLDDDGLP 1323
             N AS+ RG+FRS H R+Y SE +  E+  +      + +  K Q+K  +++ LDDDG P
Sbjct: 833  MNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFP 892

Query: 1324 HIDSDLYSGDVLIGKVGPQTVDSNSSLKLKQTEKGRVDQVVLASNDNSKKYARARLMEMR 1503
            ++ ++L SGD++IGK      D+  S+KLK TE+G V +VVL+SND  K +A   L ++R
Sbjct: 893  YVGANLQSGDIIIGKGAESGADN--SVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVR 950

Query: 1504 APSLGDKFSSMHGQKGVLGFIEEQENMPFTKEAIVPDLIINLHAFPSRQTPGQLFECALG 1683
            +P LGDKFSSMHGQKGVLGF+E QEN PFT++ IVPD++IN HAFPSRQTPGQL E ALG
Sbjct: 951  SPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALG 1010

Query: 1684 KAITASGVSGDATPFRSITVDYIIERLKK 1770
            K I   G+   ATPF + +VD I E+L +
Sbjct: 1011 KGIACGGILRQATPFSTPSVDAITEQLHR 1039



 Score = 71.2 bits (173), Expect(4) = e-116
 Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
 Frame = +2

Query: 461 EKGIFNGELIGICSNGDTLAHNLRVLRCKQCIDPMVEIKSDKSQREV*IFCDAGRLLRPL 640
           +K + NG+ +G+C +  +    LR  R +  +   VEIK D+SQ EV I+ DAGR+LRPL
Sbjct: 595 DKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQSQHEVRIYSDAGRILRPL 654

Query: 641 LLVRDQNLCINKEQLAIFKKCEKPLLYLLNYGAIELLG-VEEEDTQIACGVEIL 799
           L+V       N  ++  FK        LL+ G IEL+G  EEED   A GVE L
Sbjct: 655 LVVG------NLLKIKGFKSDCNSFQSLLDKGVIELIGPEEEEDCCTAWGVEYL 702



 Score = 47.4 bits (111), Expect(4) = e-116
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = +3

Query: 267 FRNPSYWGRVCFITTSDGENYELVKNLAVISI 362
           + +PS+WG+VCF++T DGEN  LVKNLAV  +
Sbjct: 528 YPHPSHWGKVCFLSTPDGENCGLVKNLAVTGL 559



 Score = 27.3 bits (59), Expect(4) = e-116
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 1886 GYEQWGREQMYSGRTSS-PREQMYSGRT 1966
            G+ +WG E++Y+GRT    R  ++ G T
Sbjct: 1041 GFSRWGNERVYNGRTGEMVRSLIFMGPT 1068



 Score = 77.4 bits (189), Expect = 2e-11
 Identities = 37/88 (42%), Positives = 58/88 (65%)
 Frame = +1

Query: 4   KYPTEVSVDELLNSHLFPAIDGHKQKVMFVGYLVNCLLSSYLGQRPVENRDDYYNKRVEL 183
           ++P   S+ E L  ++FP I G  +K  F+ Y+V  LL +Y G+R  +NRDD+ NKR+EL
Sbjct: 363 QFPPSESMQECLEMYVFPGISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRLEL 422

Query: 184 AAELLGHQMLVSLR*FRRRMTQAI*KDL 267
           A+ELL  ++ V +   R+RM +A+ +DL
Sbjct: 423 ASELLDRELKVHIAHARKRMAKALQRDL 450