BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00029066
         (477 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006301385.1| hypothetical protein CARUB_v10021797mg [Caps...    66   4e-09
ref|NP_178072.1| pentatricopeptide repeat-containing protein [Ar...    64   2e-08
ref|XP_002889252.1| pentatricopeptide repeat-containing protein ...    61   1e-07
ref|XP_006389878.1| hypothetical protein EUTSA_v10018150mg [Eutr...    60   3e-07
ref|XP_004956288.1| PREDICTED: pentatricopeptide repeat-containi...    58   1e-06

>ref|XP_006301385.1| hypothetical protein CARUB_v10021797mg [Capsella rubella]
           gi|482570095|gb|EOA34283.1| hypothetical protein
           CARUB_v10021797mg [Capsella rubella]
          Length = 780

 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 33/132 (25%), Positives = 74/132 (56%)
 Frame = -3

Query: 442 RATPGTYQMLVSLMAAFCEEGLVLKSFQLWVSHVSQSTSLDFDKLSQLQKIFDHGNIVDD 263
           R +P  Y+   SLM   C +  VL +F LW+ ++ + + LD +  +++++ F  G     
Sbjct: 582 RHSPAVYR---SLMTWSCRKRKVLVAFSLWMKYLKKISCLDDETANEIEQCFKEGETERA 638

Query: 262 FATVLKMYTEKHKVQPQAYSVIIEGLCKTGKTRDALKLMSIVAEEDLPLSKAICKLVIRW 83
              ++++ T K ++    YS+ + GLC++G+  +AL + S++ E+ +P++   C  +I  
Sbjct: 639 LRRLIELDTRKDELSLGPYSIWLIGLCQSGRFDEALMVFSVLREKKIPVTPPSCVKLIHG 698

Query: 82  VCNQKKPLVALE 47
           +C +++   A++
Sbjct: 699 LCKREQLDAAID 710


>ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At1g79540 gi|4835755|gb|AAD30222.1|AC007202_4 Contains
            similarity to gi|2827663 F18F4.190 membrane-associated
            salt-inducible-like protein from Arabidopsis thaliana BAC
            gb|AL021637 [Arabidopsis thaliana]
            gi|332198140|gb|AEE36261.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 780

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 36/150 (24%), Positives = 80/150 (53%), Gaps = 5/150 (3%)
 Frame = -3

Query: 442  RATPGTYQMLVSLMAAFCEEGLVLKSFQLWVSHVSQSTSLDFDKLSQLQKIFDHGNIVDD 263
            R +P  Y+   SLM   C +  VL +F LW+ ++ + + LD +  +++++ F  G     
Sbjct: 582  RHSPAVYR---SLMTWSCRKRKVLVAFNLWMKYLKKISCLDDETANEIEQCFKEGETERA 638

Query: 262  FATVLKMYTEKHKVQPQAYSVIIEGLCKTGKTRDALKLMSIVAEEDLPLSKAICKLVIRW 83
               ++++ T K ++    Y++ + GLC++G+  +AL + S++ E+ + ++   C  +I  
Sbjct: 639  LRRLIELDTRKDELTLGPYTIWLIGLCQSGRFHEALMVFSVLREKKILVTPPSCVKLIHG 698

Query: 82   VCNQKKPLVALE-----CDSKFKKIALLSN 8
            +C +++   A+E      D+ FK +  + N
Sbjct: 699  LCKREQLDAAIEVFLYTLDNNFKLMPRVCN 728


>ref|XP_002889252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297335093|gb|EFH65511.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 780

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 34/150 (22%), Positives = 79/150 (52%), Gaps = 5/150 (3%)
 Frame = -3

Query: 442  RATPGTYQMLVSLMAAFCEEGLVLKSFQLWVSHVSQSTSLDFDKLSQLQKIFDHGNIVDD 263
            R +P  Y+   SLM   C    +L +F LW+ ++ + + LD +  +++++ F  G     
Sbjct: 582  RHSPAVYR---SLMTWSCRRRKLLVAFNLWMKYLKKISCLDDETANEIEQCFKEGETERA 638

Query: 262  FATVLKMYTEKHKVQPQAYSVIIEGLCKTGKTRDALKLMSIVAEEDLPLSKAICKLVIRW 83
               ++++ T K ++    Y++ + GLC++G+  +AL + S++ E+ + ++   C  +I  
Sbjct: 639  LRRLIELDTRKDELTLGPYTIWLIGLCQSGRFHEALMVFSVLREKKILVTPPSCVKLIHG 698

Query: 82   VCNQKKPLVALE-----CDSKFKKIALLSN 8
            +C +++   A++      D+ FK +  + N
Sbjct: 699  LCKREQLDAAIDVFLYTLDNNFKLMPRVCN 728


>ref|XP_006389878.1| hypothetical protein EUTSA_v10018150mg [Eutrema salsugineum]
            gi|557086312|gb|ESQ27164.1| hypothetical protein
            EUTSA_v10018150mg [Eutrema salsugineum]
          Length = 781

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 34/150 (22%), Positives = 78/150 (52%), Gaps = 5/150 (3%)
 Frame = -3

Query: 442  RATPGTYQMLVSLMAAFCEEGLVLKSFQLWVSHVSQSTSLDFDKLSQLQKIFDHGNIVDD 263
            R +P  Y+   SLM   C +  ++ +F LW+ ++ + + LD +  +++++ F  G     
Sbjct: 585  RHSPAVYR---SLMTWSCRKRKIVVAFSLWMKYLKKISCLDDEAANEIEQCFKEGETERA 641

Query: 262  FATVLKMYTEKHKVQPQAYSVIIEGLCKTGKTRDALKLMSIVAEEDLPLSKAICKLVIRW 83
               V++M T + +     Y++ + GLC++G+ ++AL   S++ E  + ++   C  +I  
Sbjct: 642  LRWVIEMDTRRDEFGLGPYTIWLIGLCQSGRFQEALMAFSVLRENKILVTPPSCVKLIHG 701

Query: 82   VCNQKKPLVALE-----CDSKFKKIALLSN 8
            +C +++   A++      D+ FK +  + N
Sbjct: 702  LCKREQLDAAIDVFSYTLDNNFKLMPRVCN 731


>ref|XP_004956288.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like
            [Setaria italica]
          Length = 799

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 33/145 (22%), Positives = 74/145 (51%), Gaps = 2/145 (1%)
 Frame = -3

Query: 475  LLFVHMMQKRIRATPGTYQMLVSLMAAFCEEGLVLKSFQLWVSHVSQSTSLDFDK--LSQ 302
            +LF  M+Q     +   Y    S+M + C +  + ++ +LW  H+ Q  +L  +   ++ 
Sbjct: 596  MLFQDMLQSGGTPSLSIYN---SMMRSLCRKNKLSQAIKLWFDHLPQKYNLSAEDEVIAS 652

Query: 301  LQKIFDHGNIVDDFATVLKMYTEKHKVQPQAYSVIIEGLCKTGKTRDALKLMSIVAEEDL 122
             +K F+ G++ +    ++K+  E   V    Y++ + GLC+  +  DALK+  I+ E  +
Sbjct: 653  ARKKFEDGSLDEAVRELIKIDQEHGSVNSSPYTIWLIGLCQARRIDDALKIFRILVEFGI 712

Query: 121  PLSKAICKLVIRWVCNQKKPLVALE 47
             ++ A C  + +++C ++    A++
Sbjct: 713  NVTPACCSHLTKYLCWERNLNAAVD 737