BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00028895
         (585 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY78476.1| RNA polymerase IV second largest subunit [Ginkgo ...   291   8e-77
ref|XP_006827132.1| hypothetical protein AMTR_s00010p00249150 [A...   216   5e-54
ref|XP_006300099.1| hypothetical protein CARUB_v10016327mg [Caps...   196   3e-48
sp|Q9LV32.1|RPD2B_ARATH RecName: Full=DNA-directed RNA polymeras...   196   4e-48
ref|NP_188437.2| DNA-directed RNA polymerase D subunit 2b [Arabi...   196   4e-48
ref|XP_002883108.1| NRPD2a [Arabidopsis lyrata subsp. lyrata] gi...   195   6e-48
dbj|BAD43874.1| putative DNA-directed RNA polymerase subunit [Ar...   194   1e-47
ref|NP_189020.2| nuclear RNA polymerase D2A [Arabidopsis thalian...   194   1e-47
ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [S...   194   2e-47
gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlise...   193   2e-47
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV a...   193   3e-47
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...   192   4e-47
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...   192   5e-47
tpg|DAA35758.1| TPA: putative DNA-directed RNA polymerase subuni...   192   5e-47
gb|ADB19860.1| mutant required to maintain repression 7-3/RNA po...   192   5e-47
gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA p...   192   5e-47
ref|NP_001177299.1| required to maintain repression7 [Zea mays] ...   192   5e-47
gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]    192   5e-47
gb|AFW59623.1| putative DNA-directed RNA polymerase subunit fami...   192   7e-47
ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [S...   191   9e-47

>gb|AAY78476.1| RNA polymerase IV second largest subunit [Ginkgo biloba]
          Length = 651

 Score =  291 bits (745), Expect = 8e-77
 Identities = 141/195 (72%), Positives = 167/195 (85%), Gaps = 1/195 (0%)
 Frame = +2

Query: 2   DAGRLLRPLLLVRDQKLCINKEQLAIFKKCEKPLLYLLNYGAIELLGVEEE-DTQIACGV 178
           DAGR+LRPL +VRDQ+LCI+++Q+  FKK   P  YL+  G IE+LGVEEE DT+IACGV
Sbjct: 104 DAGRILRPLFIVRDQRLCISQKQIENFKKRGNPFKYLMERGIIEILGVEEEEDTKIACGV 163

Query: 179 EILLKASVNEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQAEKHSRQAIGHY 358
           +IL  A  N   +P FTHCELDPSFLLSL+A  IPF+N NLATRTLYQ+EKHS+QAIGHY
Sbjct: 164 DILRMAENNRS-YPSFTHCELDPSFLLSLSAGFIPFSNHNLATRTLYQSEKHSKQAIGHY 222

Query: 359 TTSSRVRCDTSSHQLLYPQKPLFRTLSYQCLSKPQFYNGQNAIVAVNVHYGYNQEDSLVA 538
           +T+ R RCDTS+HQL YPQKPLF+T+S +CL+K QF+NGQNAIVAVNVHYGYNQEDSLVA
Sbjct: 223 STNPRARCDTSAHQLFYPQKPLFKTMSSECLNKMQFFNGQNAIVAVNVHYGYNQEDSLVA 282

Query: 539 NHASIDRGLFRSVHY 583
           NHASIDRGLFRS+H+
Sbjct: 283 NHASIDRGLFRSMHF 297


>ref|XP_006827132.1| hypothetical protein AMTR_s00010p00249150 [Amborella trichopoda]
            gi|548831561|gb|ERM94369.1| hypothetical protein
            AMTR_s00010p00249150 [Amborella trichopoda]
          Length = 1221

 Score =  216 bits (549), Expect = 5e-54
 Identities = 110/192 (57%), Positives = 142/192 (73%), Gaps = 1/192 (0%)
 Frame = +2

Query: 2    DAGRLLRPLLLVRDQKLCINKEQLAIFKKCEKPLLYLLNYGAIELLGVEEE-DTQIACGV 178
            DAGR+LRPLL+V + KLC++ EQ+  F K   P  YLL+   +E +GVEEE D  IA GV
Sbjct: 651  DAGRILRPLLIVENNKLCVSLEQINEFIKKGCPFQYLLDKRIVEFIGVEEEEDCLIAWGV 710

Query: 179  EILLKASVNEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQAEKHSRQAIGHY 358
            + LL    N+     +THCELD SFLL L+  +IPFAN N+A R L+Q+EKHS+QAIG +
Sbjct: 711  KHLLSDEKNQPA-QKYTHCELDLSFLLGLSCGMIPFANHNMARRVLFQSEKHSQQAIGFF 769

Query: 359  TTSSRVRCDTSSHQLLYPQKPLFRTLSYQCLSKPQFYNGQNAIVAVNVHYGYNQEDSLVA 538
            T++   R DT SH+L YPQKPLF+T+  +C+  P+F+NGQNAIVAVNVH GYNQEDS+V 
Sbjct: 770  TSNPNNRVDTLSHRLYYPQKPLFKTMLSECIGIPEFHNGQNAIVAVNVHEGYNQEDSIVM 829

Query: 539  NHASIDRGLFRS 574
            N AS+DRG+FR+
Sbjct: 830  NRASLDRGMFRT 841


>ref|XP_006300099.1| hypothetical protein CARUB_v10016327mg [Capsella rubella]
            gi|482568808|gb|EOA32997.1| hypothetical protein
            CARUB_v10016327mg [Capsella rubella]
          Length = 1161

 Score =  196 bits (499), Expect = 3e-48
 Identities = 103/192 (53%), Positives = 134/192 (69%), Gaps = 1/192 (0%)
 Frame = +2

Query: 2    DAGRLLRPLLLVRDQKLCINKEQLAIFKKCEKPLLYLLNYGAIELLGVEEE-DTQIACGV 178
            DAGRLLRPLL+V+      N  +L   K  + P  +LL+ G +EL+G+EEE D   A G+
Sbjct: 611  DAGRLLRPLLVVK------NLHKLKQDKPTQYPFEHLLDQGILELIGIEEEEDCNTAWGI 664

Query: 179  EILLKASVNEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQAEKHSRQAIGHY 358
              LLK   N      +THCELD SFLL ++ +++PFAN +   R LYQ++KH +QAIG  
Sbjct: 665  PYLLKEPNN------YTHCELDLSFLLGVSCAIVPFANHDHGRRVLYQSQKHCQQAIGFS 718

Query: 359  TTSSRVRCDTSSHQLLYPQKPLFRTLSYQCLSKPQFYNGQNAIVAVNVHYGYNQEDSLVA 538
            +T+  +RCDT S QL YPQKPLF+TL+ +CL K   +NGQNAIVAVNVH GYNQEDS+V 
Sbjct: 719  STNPNIRCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVM 778

Query: 539  NHASIDRGLFRS 574
            N AS++RG+FRS
Sbjct: 779  NKASLERGMFRS 790


>sp|Q9LV32.1|RPD2B_ARATH RecName: Full=DNA-directed RNA polymerase D subunit 2b;
            Short=AtNRPD2b; Short=Nuclear RNA polymerase D 2b;
            AltName: Full=RNA polymerase IV subunit 2b; Short=POL IV
            2b gi|9294064|dbj|BAB02021.1| DNA-dependent RNA
            polymerase II [Arabidopsis thaliana]
          Length = 1119

 Score =  196 bits (498), Expect = 4e-48
 Identities = 103/192 (53%), Positives = 134/192 (69%), Gaps = 1/192 (0%)
 Frame = +2

Query: 2    DAGRLLRPLLLVRDQKLCINKEQLAIFKKCEKPLLYLLNYGAIELLGVEEE-DTQIACGV 178
            DAGRLLRPLL+V       N  +L   K  + P  +LL+ G +EL+G+EEE D   A G+
Sbjct: 569  DAGRLLRPLLVVE------NLHKLKQDKPTQYPFKHLLDQGILELIGIEEEEDCTTAWGI 622

Query: 179  EILLKASVNEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQAEKHSRQAIGHY 358
            + LLK   N      +THCELD SFLL ++ +++PFAN +   R LYQ++KH +QAIG  
Sbjct: 623  KQLLKEPKN------YTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQKHCQQAIGFS 676

Query: 359  TTSSRVRCDTSSHQLLYPQKPLFRTLSYQCLSKPQFYNGQNAIVAVNVHYGYNQEDSLVA 538
            +T+  +RCDT S QL YPQKPLF+TL+ +CL K   +NGQNAIVAVNVH GYNQEDS+V 
Sbjct: 677  STNPNIRCDTLSQQLFYPQKPLFKTLASECLEKEVLFNGQNAIVAVNVHLGYNQEDSIVM 736

Query: 539  NHASIDRGLFRS 574
            N AS++RG+FRS
Sbjct: 737  NKASLERGMFRS 748


>ref|NP_188437.2| DNA-directed RNA polymerase D subunit 2b [Arabidopsis thaliana]
            gi|332642524|gb|AEE76045.1| DNA-directed RNA polymerase D
            subunit 2b [Arabidopsis thaliana]
          Length = 1055

 Score =  196 bits (498), Expect = 4e-48
 Identities = 103/192 (53%), Positives = 134/192 (69%), Gaps = 1/192 (0%)
 Frame = +2

Query: 2    DAGRLLRPLLLVRDQKLCINKEQLAIFKKCEKPLLYLLNYGAIELLGVEEE-DTQIACGV 178
            DAGRLLRPLL+V       N  +L   K  + P  +LL+ G +EL+G+EEE D   A G+
Sbjct: 505  DAGRLLRPLLVVE------NLHKLKQDKPTQYPFKHLLDQGILELIGIEEEEDCTTAWGI 558

Query: 179  EILLKASVNEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQAEKHSRQAIGHY 358
            + LLK   N      +THCELD SFLL ++ +++PFAN +   R LYQ++KH +QAIG  
Sbjct: 559  KQLLKEPKN------YTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQKHCQQAIGFS 612

Query: 359  TTSSRVRCDTSSHQLLYPQKPLFRTLSYQCLSKPQFYNGQNAIVAVNVHYGYNQEDSLVA 538
            +T+  +RCDT S QL YPQKPLF+TL+ +CL K   +NGQNAIVAVNVH GYNQEDS+V 
Sbjct: 613  STNPNIRCDTLSQQLFYPQKPLFKTLASECLEKEVLFNGQNAIVAVNVHLGYNQEDSIVM 672

Query: 539  NHASIDRGLFRS 574
            N AS++RG+FRS
Sbjct: 673  NKASLERGMFRS 684


>ref|XP_002883108.1| NRPD2a [Arabidopsis lyrata subsp. lyrata] gi|297328948|gb|EFH59367.1|
            NRPD2a [Arabidopsis lyrata subsp. lyrata]
          Length = 1169

 Score =  195 bits (496), Expect = 6e-48
 Identities = 102/192 (53%), Positives = 134/192 (69%), Gaps = 1/192 (0%)
 Frame = +2

Query: 2    DAGRLLRPLLLVRDQKLCINKEQLAIFKKCEKPLLYLLNYGAIELLGVEEE-DTQIACGV 178
            DAGRLLRPLL+V       N  +L   K  + P  +LL+ G +EL+G+EEE D   A G+
Sbjct: 619  DAGRLLRPLLVVE------NLHKLKQDKPTQYPFKHLLDQGILELIGIEEEEDCNTAWGI 672

Query: 179  EILLKASVNEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQAEKHSRQAIGHY 358
            + LLK   N      +THCELD SFLL ++ +++PFAN +   R LYQ++KH +QAIG  
Sbjct: 673  KQLLKEPKN------YTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQKHCQQAIGFS 726

Query: 359  TTSSRVRCDTSSHQLLYPQKPLFRTLSYQCLSKPQFYNGQNAIVAVNVHYGYNQEDSLVA 538
            +T+  +RCDT S QL YPQKPLF+T++ +CL K   +NGQNAIVAVNVH GYNQEDS+V 
Sbjct: 727  STNPNIRCDTLSQQLFYPQKPLFKTVASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVM 786

Query: 539  NHASIDRGLFRS 574
            N AS++RG+FRS
Sbjct: 787  NKASLERGMFRS 798


>dbj|BAD43874.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 639

 Score =  194 bits (493), Expect = 1e-47
 Identities = 102/192 (53%), Positives = 135/192 (70%), Gaps = 1/192 (0%)
 Frame = +2

Query: 2   DAGRLLRPLLLVRDQKLCINKEQLAIFKKCEKPLLYLLNYGAIELLGVEEE-DTQIACGV 178
           DAGRLLRPLL+V       N ++L   K  + P  +LL++G +EL+G+EEE D   A G+
Sbjct: 90  DAGRLLRPLLVVE------NLQKLKQEKPSQYPFDHLLDHGILELIGIEEEEDCNTAWGI 143

Query: 179 EILLKASVNEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQAEKHSRQAIGHY 358
           + LLK          +THCELD SFLL ++ +++PFAN +   R LYQ++KH +QAIG  
Sbjct: 144 KQLLKEP------KIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFS 197

Query: 359 TTSSRVRCDTSSHQLLYPQKPLFRTLSYQCLSKPQFYNGQNAIVAVNVHYGYNQEDSLVA 538
           +T+  +RCDT S QL YPQKPLF+TL+ +CL K   +NGQNAIVAVNVH GYNQEDS+V 
Sbjct: 198 STNPNIRCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVM 257

Query: 539 NHASIDRGLFRS 574
           N AS++RG+FRS
Sbjct: 258 NKASLERGMFRS 269


>ref|NP_189020.2| nuclear RNA polymerase D2A [Arabidopsis thaliana]
            gi|334185578|ref|NP_001189957.1| nuclear RNA polymerase
            D2A [Arabidopsis thaliana]
            gi|75335101|sp|Q9LK40.1|NRPD2_ARATH RecName:
            Full=DNA-directed RNA polymerases IV and V subunit 2;
            AltName: Full=DNA-directed RNA polymerase D subunit 2a;
            Short=AtNRPD2a; Short=Nuclear RNA polymerase D 2a;
            AltName: Full=Nuclear RNA polymerase E 2; AltName:
            Full=Protein DEFECTIVE IN MERISTEM SILENCING 2; AltName:
            Full=Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 2;
            AltName: Full=RNA polymerase IV subunit 2a; Short=POL IV
            2a gi|9293951|dbj|BAB01854.1| DNA-directed RNA
            polymerase, subunit B [Arabidopsis thaliana]
            gi|57791156|gb|AAW56422.1| polymerase IV second largest
            subunit [Arabidopsis thaliana] gi|62183738|gb|AAX73261.1|
            RNA polymerase IV second-largest subunit [Arabidopsis
            thaliana] gi|332643291|gb|AEE76812.1| nuclear RNA
            polymerase D2A [Arabidopsis thaliana]
            gi|332643292|gb|AEE76813.1| nuclear RNA polymerase D2A
            [Arabidopsis thaliana]
          Length = 1172

 Score =  194 bits (493), Expect = 1e-47
 Identities = 102/192 (53%), Positives = 135/192 (70%), Gaps = 1/192 (0%)
 Frame = +2

Query: 2    DAGRLLRPLLLVRDQKLCINKEQLAIFKKCEKPLLYLLNYGAIELLGVEEE-DTQIACGV 178
            DAGRLLRPLL+V       N ++L   K  + P  +LL++G +EL+G+EEE D   A G+
Sbjct: 623  DAGRLLRPLLVVE------NLQKLKQEKPSQYPFDHLLDHGILELIGIEEEEDCNTAWGI 676

Query: 179  EILLKASVNEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQAEKHSRQAIGHY 358
            + LLK          +THCELD SFLL ++ +++PFAN +   R LYQ++KH +QAIG  
Sbjct: 677  KQLLKEP------KIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFS 730

Query: 359  TTSSRVRCDTSSHQLLYPQKPLFRTLSYQCLSKPQFYNGQNAIVAVNVHYGYNQEDSLVA 538
            +T+  +RCDT S QL YPQKPLF+TL+ +CL K   +NGQNAIVAVNVH GYNQEDS+V 
Sbjct: 731  STNPNIRCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVM 790

Query: 539  NHASIDRGLFRS 574
            N AS++RG+FRS
Sbjct: 791  NKASLERGMFRS 802


>ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor]
            gi|241922081|gb|EER95225.1| hypothetical protein
            SORBIDRAFT_01g042100 [Sorghum bicolor]
          Length = 1228

 Score =  194 bits (492), Expect = 2e-47
 Identities = 108/208 (51%), Positives = 137/208 (65%), Gaps = 15/208 (7%)
 Frame = +2

Query: 2    DAGRLLRPLLLVRDQKLCINKEQLAIFKKCEKPLLYLLNYGAIELLGVEEE-DTQIACGV 178
            DAGR+LRPLL+V + K  I K +   F   E     L+    IE +GVEEE D Q A G+
Sbjct: 673  DAGRILRPLLVVENLKK-IRKPKGRSFSFQE-----LMQQEIIEFIGVEEEEDIQCAWGI 726

Query: 179  EILLKASVNEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQAEKHSRQAIGHY 358
              L ++   EG    +THCELDPSFLL L+  +IPFAN N A R LYQ+EKHS+QAIG+ 
Sbjct: 727  RHLFES---EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYS 783

Query: 359  TTSSRVRCDTSSHQLLYPQKPLFRTLSYQCLS--------------KPQFYNGQNAIVAV 496
            TT+  +R DT SHQL YPQ+PLF+T+   CL               +P+++NGQNAIVAV
Sbjct: 784  TTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYTTFGRKDDFMRPEYFNGQNAIVAV 843

Query: 497  NVHYGYNQEDSLVANHASIDRGLFRSVH 580
            NVH G+NQEDSLV N AS++RG+FR+ H
Sbjct: 844  NVHQGFNQEDSLVMNRASLERGMFRTEH 871


>gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlisea aurea]
          Length = 1205

 Score =  193 bits (491), Expect = 2e-47
 Identities = 110/209 (52%), Positives = 136/209 (65%), Gaps = 16/209 (7%)
 Frame = +2

Query: 2    DAGRLLRPLLLVRDQKLCINKEQLAIFKKCEKPLLYLLNYGAIELLGVEEE-DTQIACGV 178
            DAGR+LRPLL+VR+ +   + +    F+        LL+ G +EL+G EEE D Q A G 
Sbjct: 648  DAGRILRPLLVVRNLRKINDLKSHVFFQS-------LLDVGIVELIGPEEEEDCQTAWGT 700

Query: 179  EILLKASVNEGLFPP--FTHCELDPSFLLSLNASLIPFANRNLATRTLYQAEKHSRQAIG 352
            + L  A +     PP  ++HCELD SFLL L+  +IPFAN + A R LYQ+EKHS+QAIG
Sbjct: 701  KYLFMAELEN---PPVKYSHCELDSSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIG 757

Query: 353  HYTTSSRVRCDTSSHQLLYPQKPLFRTLSYQCLSK-------------PQFYNGQNAIVA 493
              TTS  +R DT+SHQL YPQKPLFRT+   CL K             P F+NGQ AIVA
Sbjct: 758  FSTTSPNIRVDTNSHQLYYPQKPLFRTVLSDCLGKLTDSCRRKGIIPLPPFFNGQCAIVA 817

Query: 494  VNVHYGYNQEDSLVANHASIDRGLFRSVH 580
            VNVH GYNQEDSLV N AS++RG+FRS H
Sbjct: 818  VNVHLGYNQEDSLVMNRASLERGMFRSEH 846


>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score =  193 bits (490), Expect = 3e-47
 Identities = 112/207 (54%), Positives = 132/207 (63%), Gaps = 14/207 (6%)
 Frame = +2

Query: 2    DAGRLLRPLLLVRDQKLCINKEQLAIFKKCEKPLLYLLNYGAIELLGVEEE-DTQIACGV 178
            DAGR+LRPLL+V       N  ++  FK        LL+ G IEL+G EEE D   A GV
Sbjct: 649  DAGRILRPLLVVG------NLLKIKGFKSDRYSFQSLLDKGVIELIGPEEEEDCCTAWGV 702

Query: 179  EILLKASVNEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQAEKHSRQAIGHY 358
            E L        +   +THCELD SFLL L+ SL+PFAN + A R LYQ++KHS QAIG  
Sbjct: 703  EYLFGKEGKRSV--KYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFS 760

Query: 359  TTSSRVRCDTSSHQLLYPQKPLFRTLSYQCLSKP-------------QFYNGQNAIVAVN 499
            TT+  +R DT SHQL YPQKPLFRT++  CL KP             +FYNGQNAIVAVN
Sbjct: 761  TTNPNIRVDTLSHQLHYPQKPLFRTMTSDCLGKPDHSLGQSKIPPKAEFYNGQNAIVAVN 820

Query: 500  VHYGYNQEDSLVANHASIDRGLFRSVH 580
            VH GYNQEDSLV N AS+ RG+FRS H
Sbjct: 821  VHLGYNQEDSLVMNRASLQRGMFRSEH 847


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score =  192 bits (489), Expect = 4e-47
 Identities = 109/207 (52%), Positives = 135/207 (65%), Gaps = 14/207 (6%)
 Frame = +2

Query: 2    DAGRLLRPLLLVRDQKLCINKEQLAIFKKCEKPLLYLLNYGAIELLGVEEE-DTQIACGV 178
            DAGR+LRPLL+V+      N  ++  FK        LL+ G IE +G EEE D   A G+
Sbjct: 646  DAGRILRPLLVVQ------NLHKIEAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGI 699

Query: 179  EILLKASVNEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQAEKHSRQAIGHY 358
            + LL + V+      +THCELD SFLL L+  +IPFAN + A R LYQA+KHS+QAIG  
Sbjct: 700  KFLL-SGVDGKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFP 758

Query: 359  TTSSRVRCDTSSHQLLYPQKPLFRTLSYQCLS-------------KPQFYNGQNAIVAVN 499
            TT+  +R DT SHQL YPQ+PLFRT++  CL              KP+ YNGQNAIVAVN
Sbjct: 759  TTNPNIRVDTLSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVN 818

Query: 500  VHYGYNQEDSLVANHASIDRGLFRSVH 580
            VH GYNQEDSLV N AS++RG+FRS H
Sbjct: 819  VHLGYNQEDSLVMNRASLERGMFRSEH 845


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1181

 Score =  192 bits (488), Expect = 5e-47
 Identities = 110/197 (55%), Positives = 136/197 (69%), Gaps = 4/197 (2%)
 Frame = +2

Query: 2    DAGRLLRPLLLVRDQKLCINKEQLAIFKKCEKPLLYLLNYGAIELLGVEEE-DTQIACGV 178
            DAGR+LRPLL+V       N +++  FK        LL+ G IE +G EEE D   A G+
Sbjct: 635  DAGRILRPLLVVE------NLDKIKAFKGGNYIFTSLLDKGIIEFIGTEEEEDCCTAWGI 688

Query: 179  EILLKASVNEGLFP-PFTHCELDPSFLLSLNASLIPFANRNLATRTLYQAEKHSRQAIGH 355
            + LL A + EG  P  ++HCELD SFLL L+  +IPFAN + A R LYQA+KHS+QAIG 
Sbjct: 689  KFLL-ADI-EGKQPMKYSHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGF 746

Query: 356  YTTSSRVRCDTSSHQLLYPQKPLFRTLSYQC--LSKPQFYNGQNAIVAVNVHYGYNQEDS 529
             TT+  +R DT SHQL YPQ+PLFRT+   C  L KP+ +NGQNAIVAVNVH GYNQEDS
Sbjct: 747  STTNPNIRVDTLSHQLHYPQRPLFRTMISDCLVLPKPELFNGQNAIVAVNVHLGYNQEDS 806

Query: 530  LVANHASIDRGLFRSVH 580
            LV N AS++RG+FRS H
Sbjct: 807  LVMNRASLERGMFRSEH 823


>tpg|DAA35758.1| TPA: putative DNA-directed RNA polymerase subunit family protein [Zea
            mays]
          Length = 1063

 Score =  192 bits (488), Expect = 5e-47
 Identities = 107/208 (51%), Positives = 137/208 (65%), Gaps = 15/208 (7%)
 Frame = +2

Query: 2    DAGRLLRPLLLVRDQKLCINKEQLAIFKKCEKPLLYLLNYGAIELLGVEEE-DTQIACGV 178
            DAGR+LRPLL+V +    I K +   F   E     L+    IE +GVEEE D Q A G+
Sbjct: 674  DAGRILRPLLVVENLNK-IRKPKGRSFSFHE-----LMQQEIIEFIGVEEEEDIQCAWGI 727

Query: 179  EILLKASVNEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQAEKHSRQAIGHY 358
              L ++   EG    +THCELDPSFLL L+  +IPFAN N A R LYQ+EKHS+QAIG+ 
Sbjct: 728  RHLFES---EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYS 784

Query: 359  TTSSRVRCDTSSHQLLYPQKPLFRTLSYQCL--------------SKPQFYNGQNAIVAV 496
            TT+  +R DT SHQL YPQ+PLF+T+   CL              ++P+++NGQNAIVAV
Sbjct: 785  TTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAV 844

Query: 497  NVHYGYNQEDSLVANHASIDRGLFRSVH 580
            NVH G+NQEDSLV N AS++RG+FR+ H
Sbjct: 845  NVHQGFNQEDSLVMNRASLERGMFRTEH 872


>gb|ADB19860.1| mutant required to maintain repression 7-3/RNA polymerase D second
            largest subunit 2-3 [Zea mays]
          Length = 1094

 Score =  192 bits (488), Expect = 5e-47
 Identities = 107/208 (51%), Positives = 137/208 (65%), Gaps = 15/208 (7%)
 Frame = +2

Query: 2    DAGRLLRPLLLVRDQKLCINKEQLAIFKKCEKPLLYLLNYGAIELLGVEEE-DTQIACGV 178
            DAGR+LRPLL+V +    I K +   F   E     L+    IE +GVEEE D Q A G+
Sbjct: 674  DAGRILRPLLVVENLNK-IRKPKGRSFSFHE-----LMQQEIIEFIGVEEEEDIQCAWGI 727

Query: 179  EILLKASVNEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQAEKHSRQAIGHY 358
              L ++   EG    +THCELDPSFLL L+  +IPFAN N A R LYQ+EKHS+QAIG+ 
Sbjct: 728  RHLFES---EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYS 784

Query: 359  TTSSRVRCDTSSHQLLYPQKPLFRTLSYQCL--------------SKPQFYNGQNAIVAV 496
            TT+  +R DT SHQL YPQ+PLF+T+   CL              ++P+++NGQNAIVAV
Sbjct: 785  TTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAV 844

Query: 497  NVHYGYNQEDSLVANHASIDRGLFRSVH 580
            NVH G+NQEDSLV N AS++RG+FR+ H
Sbjct: 845  NVHQGFNQEDSLVMNRASLERGMFRTEH 872


>gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA polymerase D second
            largest subunit 2-2 [Zea mays]
          Length = 1229

 Score =  192 bits (488), Expect = 5e-47
 Identities = 107/208 (51%), Positives = 137/208 (65%), Gaps = 15/208 (7%)
 Frame = +2

Query: 2    DAGRLLRPLLLVRDQKLCINKEQLAIFKKCEKPLLYLLNYGAIELLGVEEE-DTQIACGV 178
            DAGR+LRPLL+V +    I K +   F   E     L+    IE +GVEEE D Q A G+
Sbjct: 674  DAGRILRPLLVVENLNK-IRKPKGRSFSFHE-----LMQQEIIEFIGVEEEEDIQCAWGI 727

Query: 179  EILLKASVNEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQAEKHSRQAIGHY 358
              L ++   EG    +THCELDPSFLL L+  +IPFAN N A R LYQ+EKHS+QAIG+ 
Sbjct: 728  RHLFES---EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYS 784

Query: 359  TTSSRVRCDTSSHQLLYPQKPLFRTLSYQCL--------------SKPQFYNGQNAIVAV 496
            TT+  +R DT SHQL YPQ+PLF+T+   CL              ++P+++NGQNAIVAV
Sbjct: 785  TTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAV 844

Query: 497  NVHYGYNQEDSLVANHASIDRGLFRSVH 580
            NVH G+NQEDSLV N AS++RG+FR+ H
Sbjct: 845  NVHQGFNQEDSLVMNRASLERGMFRTEH 872


>ref|NP_001177299.1| required to maintain repression7 [Zea mays]
            gi|283443696|gb|ADB19857.1| required to maintain
            repression 7/RNA polymerase D second largest subunit [Zea
            mays] gi|297185477|gb|ADI24118.1| RPD2/E2a [Zea mays]
            gi|414585188|tpg|DAA35759.1| TPA: putative DNA-directed
            RNA polymerase subunit family protein [Zea mays]
          Length = 1229

 Score =  192 bits (488), Expect = 5e-47
 Identities = 107/208 (51%), Positives = 137/208 (65%), Gaps = 15/208 (7%)
 Frame = +2

Query: 2    DAGRLLRPLLLVRDQKLCINKEQLAIFKKCEKPLLYLLNYGAIELLGVEEE-DTQIACGV 178
            DAGR+LRPLL+V +    I K +   F   E     L+    IE +GVEEE D Q A G+
Sbjct: 674  DAGRILRPLLVVENLNK-IRKPKGRSFSFHE-----LMQQEIIEFIGVEEEEDIQCAWGI 727

Query: 179  EILLKASVNEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQAEKHSRQAIGHY 358
              L ++   EG    +THCELDPSFLL L+  +IPFAN N A R LYQ+EKHS+QAIG+ 
Sbjct: 728  RHLFES---EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYS 784

Query: 359  TTSSRVRCDTSSHQLLYPQKPLFRTLSYQCL--------------SKPQFYNGQNAIVAV 496
            TT+  +R DT SHQL YPQ+PLF+T+   CL              ++P+++NGQNAIVAV
Sbjct: 785  TTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAV 844

Query: 497  NVHYGYNQEDSLVANHASIDRGLFRSVH 580
            NVH G+NQEDSLV N AS++RG+FR+ H
Sbjct: 845  NVHQGFNQEDSLVMNRASLERGMFRTEH 872


>gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]
          Length = 1170

 Score =  192 bits (488), Expect = 5e-47
 Identities = 107/208 (51%), Positives = 137/208 (65%), Gaps = 15/208 (7%)
 Frame = +2

Query: 2    DAGRLLRPLLLVRDQKLCINKEQLAIFKKCEKPLLYLLNYGAIELLGVEEE-DTQIACGV 178
            DAGR+LRPLL+V +    I K +   F   E     L+    IE +GVEEE D Q A G+
Sbjct: 615  DAGRILRPLLVVENLNK-IRKPKGRSFSFHE-----LMQQEIIEFIGVEEEEDIQCAWGI 668

Query: 179  EILLKASVNEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQAEKHSRQAIGHY 358
              L ++   EG    +THCELDPSFLL L+  +IPFAN N A R LYQ+EKHS+QAIG+ 
Sbjct: 669  RHLFES---EGAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYS 725

Query: 359  TTSSRVRCDTSSHQLLYPQKPLFRTLSYQCL--------------SKPQFYNGQNAIVAV 496
            TT+  +R DT SHQL YPQ+PLF+T+   CL              ++P+++NGQNAIVAV
Sbjct: 726  TTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAV 785

Query: 497  NVHYGYNQEDSLVANHASIDRGLFRSVH 580
            NVH G+NQEDSLV N AS++RG+FR+ H
Sbjct: 786  NVHQGFNQEDSLVMNRASLERGMFRTEH 813


>gb|AFW59623.1| putative DNA-directed RNA polymerase subunit family protein [Zea
            mays]
          Length = 2163

 Score =  192 bits (487), Expect = 7e-47
 Identities = 106/208 (50%), Positives = 138/208 (66%), Gaps = 15/208 (7%)
 Frame = +2

Query: 2    DAGRLLRPLLLVRDQKLCINKEQLAIFKKCEKPLLYLLNYGAIELLGVEEE-DTQIACGV 178
            DAGR+LRPLL+V +    I K +   F   E     L+    IE +GVEEE D Q A G+
Sbjct: 1608 DAGRILRPLLVVENLNK-IRKPKGRSFSFQE-----LMQQEIIEFIGVEEEEDIQCAWGI 1661

Query: 179  EILLKASVNEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQAEKHSRQAIGHY 358
              L ++   EG    +THCELDPSF+L L+  +IPFAN N A R LYQ+EKHS+QAIG+ 
Sbjct: 1662 RHLFES---EGAISSYTHCELDPSFILGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYS 1718

Query: 359  TTSSRVRCDTSSHQLLYPQKPLFRTLSYQCL--------------SKPQFYNGQNAIVAV 496
            T++ R+R DT SHQL YPQ+PLF+T+   CL              ++P+++NGQNAIVAV
Sbjct: 1719 TSNPRIRVDTLSHQLYYPQRPLFKTVIADCLGRSDCTTFGRKDDFTRPEYFNGQNAIVAV 1778

Query: 497  NVHYGYNQEDSLVANHASIDRGLFRSVH 580
            NVH G+NQEDSLV N AS++RG+FR+ H
Sbjct: 1779 NVHQGFNQEDSLVMNRASLERGMFRTEH 1806


>ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
            gi|241938382|gb|EES11527.1| hypothetical protein
            SORBIDRAFT_06g030300 [Sorghum bicolor]
          Length = 1239

 Score =  191 bits (486), Expect = 9e-47
 Identities = 106/208 (50%), Positives = 137/208 (65%), Gaps = 15/208 (7%)
 Frame = +2

Query: 2    DAGRLLRPLLLVRDQKLCINKEQLAIFKKCEKPLLYLLNYGAIELLGVEEE-DTQIACGV 178
            DAGR+LRPLL+V +    I K +   F   E     L+    IE +GVEEE D Q A G+
Sbjct: 684  DAGRILRPLLVVENLNK-IRKPKGRSFSFQE-----LMQQEIIEFIGVEEEEDIQCAWGI 737

Query: 179  EILLKASVNEGLFPPFTHCELDPSFLLSLNASLIPFANRNLATRTLYQAEKHSRQAIGHY 358
              L ++   EG    +THCELDPSFL+ L+  +IPFAN N A R LYQ+EKHS+QAIG+ 
Sbjct: 738  RHLFES---EGAISSYTHCELDPSFLMGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYS 794

Query: 359  TTSSRVRCDTSSHQLLYPQKPLFRTLSYQCL--------------SKPQFYNGQNAIVAV 496
            TT+  +R DT SHQL YPQ+PLF+T+   CL              ++P+++NGQNAIVAV
Sbjct: 795  TTNPHIRVDTLSHQLYYPQRPLFKTVIADCLGRSDYTAFGRKDDYTRPEYFNGQNAIVAV 854

Query: 497  NVHYGYNQEDSLVANHASIDRGLFRSVH 580
            NVH G+NQEDSLV N AS++RG+FR+ H
Sbjct: 855  NVHQGFNQEDSLVMNRASLERGMFRTEH 882