BLASTX nr result
ID: Ephedra25_contig00028869
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00028869
(491 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAW22904.1| RNA polymerase II second largest subunit [Ephedra... 49 1e-11
ref|NP_001234825.1| RNA polymerase II second largest subunit [So... 49 2e-10
ref|XP_006350058.1| PREDICTED: DNA-directed RNA polymerase II su... 49 2e-10
gb|AAY89342.1| RNA polymerase II second largest subunit [Nicotia... 49 2e-10
gb|AAY89344.1| RNA polymerase II second largest subunit [Petunia... 49 2e-10
gb|AAY85234.1| RNA polymerase II second largest subunit [Sarrace... 47 2e-10
gb|EPS65990.1| hypothetical protein M569_08783, partial [Genlise... 47 5e-10
gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrh... 47 6e-10
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su... 47 6e-10
gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis p... 47 6e-10
gb|AAY85199.1| RNA polymerase II second largest subunit [Cissus ... 47 6e-10
gb|AAS86826.1| RNA polymerase II second largest subunit, partial... 47 7e-10
emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis... 47 7e-10
gb|AAW22887.1| RNA polymerase II second largest subunit [Lycopod... 45 7e-10
ref|XP_001766425.1| predicted protein [Physcomitrella patens] gi... 47 8e-10
emb|CAD92665.1| RNA polymerase II [Mimulus guttatus] 47 8e-10
gb|AAW22929.1| RNA polymerase II second largest subunit [Musa ve... 47 9e-10
gb|AAY85192.1| RNA polymerase II second largest subunit [Argemon... 46 9e-10
gb|AFV74909.1| RNA polymerase II second largest subunit, partial... 46 1e-09
gb|EOY28253.1| DNA-directed RNA polymerase family protein isofor... 47 1e-09
>gb|AAW22904.1| RNA polymerase II second largest subunit [Ephedra distachya]
Length = 551
Score = 48.5 bits (114), Expect(2) = 1e-11
Identities = 23/35 (65%), Positives = 25/35 (71%)
Frame = +1
Query: 127 FVEVSTIVIATNIKVLVNLYWIGIHRNPDQLVNIL 231
F E+S VI T KV VN W+GIHRNPDQLVN L
Sbjct: 28 FEEISPAVIPTATKVFVNGCWVGIHRNPDQLVNTL 62
Score = 46.2 bits (108), Expect(2) = 1e-11
Identities = 20/36 (55%), Positives = 29/36 (80%)
Frame = +2
Query: 224 TFSELR*KVDINSEVGIVRNIALKKLRMYTDYEKAA 331
T +LR +VD+N EVG+VR+I LK+LR+YTDY + +
Sbjct: 61 TLRQLRRQVDVNPEVGVVRDIPLKELRLYTDYGRCS 96
>ref|NP_001234825.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
gi|68300807|gb|AAY89345.1| RNA polymerase II second
largest subunit [Solanum lycopersicum]
Length = 1205
Score = 48.5 bits (114), Expect(2) = 2e-10
Identities = 21/36 (58%), Positives = 30/36 (83%)
Frame = +2
Query: 224 TFSELR*KVDINSEVGIVRNIALKKLRMYTDYEKAA 331
T +LR +VD+N+EVG+VRNI LK+LR+YTDY + +
Sbjct: 608 TLRQLRRQVDVNTEVGVVRNINLKELRLYTDYGRCS 643
Score = 42.0 bits (97), Expect(2) = 2e-10
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 127 FVEVSTIVIATNIKVLVNLYWIGIHRNPDQLVNIL 231
F E+S VI + K+ VN W+GIHRNPD LV L
Sbjct: 575 FEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVRTL 609
>ref|XP_006350058.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Solanum tuberosum]
Length = 1203
Score = 48.5 bits (114), Expect(2) = 2e-10
Identities = 21/36 (58%), Positives = 30/36 (83%)
Frame = +2
Query: 224 TFSELR*KVDINSEVGIVRNIALKKLRMYTDYEKAA 331
T +LR +VD+N+EVG+VRNI LK+LR+YTDY + +
Sbjct: 606 TLRQLRRQVDVNTEVGVVRNINLKELRLYTDYGRCS 641
Score = 42.0 bits (97), Expect(2) = 2e-10
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 127 FVEVSTIVIATNIKVLVNLYWIGIHRNPDQLVNIL 231
F E+S VI + K+ VN W+GIHRNPD LV L
Sbjct: 573 FEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVRTL 607
>gb|AAY89342.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
Length = 1203
Score = 48.5 bits (114), Expect(2) = 2e-10
Identities = 21/36 (58%), Positives = 30/36 (83%)
Frame = +2
Query: 224 TFSELR*KVDINSEVGIVRNIALKKLRMYTDYEKAA 331
T +LR +VD+N+EVG+VRNI LK+LR+YTDY + +
Sbjct: 603 TLRQLRRQVDVNTEVGVVRNINLKELRLYTDYGRCS 638
Score = 42.0 bits (97), Expect(2) = 2e-10
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 127 FVEVSTIVIATNIKVLVNLYWIGIHRNPDQLVNIL 231
F E+S VI + K+ VN W+GIHRNPD LV L
Sbjct: 570 FEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVRTL 604
>gb|AAY89344.1| RNA polymerase II second largest subunit [Petunia x hybrida]
Length = 1203
Score = 48.5 bits (114), Expect(2) = 2e-10
Identities = 21/36 (58%), Positives = 30/36 (83%)
Frame = +2
Query: 224 TFSELR*KVDINSEVGIVRNIALKKLRMYTDYEKAA 331
T +LR +VD+N+EVG+VRNI LK+LR+YTDY + +
Sbjct: 603 TLRQLRRQVDVNTEVGVVRNINLKELRLYTDYGRCS 638
Score = 42.0 bits (97), Expect(2) = 2e-10
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 127 FVEVSTIVIATNIKVLVNLYWIGIHRNPDQLVNIL 231
F E+S VI + K+ VN W+GIHRNPD LV L
Sbjct: 570 FEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVRTL 604
>gb|AAY85234.1| RNA polymerase II second largest subunit [Sarracenia alata]
Length = 213
Score = 46.6 bits (109), Expect(2) = 2e-10
Identities = 23/47 (48%), Positives = 34/47 (72%), Gaps = 5/47 (10%)
Frame = +2
Query: 224 TFSELR*KVDINSEVGIVRNIALKKLRMYTDYEKAA-----MEKQAM 349
T LR +VD+N+EVG+VR+I LK+LR+YTDY + + +EKQ +
Sbjct: 68 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 114
Score = 43.9 bits (102), Expect(2) = 2e-10
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = +1
Query: 127 FVEVSTIVIATNIKVLVNLYWIGIHRNPDQLVNIL 231
F E+S +VI K+ VN W GIHRNPD LVN L
Sbjct: 35 FEEISPVVIPQATKIFVNGCWAGIHRNPDMLVNTL 69
>gb|EPS65990.1| hypothetical protein M569_08783, partial [Genlisea aurea]
Length = 1199
Score = 46.6 bits (109), Expect(2) = 5e-10
Identities = 23/47 (48%), Positives = 34/47 (72%), Gaps = 5/47 (10%)
Frame = +2
Query: 224 TFSELR*KVDINSEVGIVRNIALKKLRMYTDYEKAA-----MEKQAM 349
T LR +VD+N+EVG+VR+I LK+LR+YTDY + + +EKQ +
Sbjct: 598 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 644
Score = 42.7 bits (99), Expect(2) = 5e-10
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 127 FVEVSTIVIATNIKVLVNLYWIGIHRNPDQLVNIL 231
F E+S VI K+ VN +W GIHRNPD LV+ L
Sbjct: 565 FEEISPAVIPQATKIFVNGFWFGIHRNPDMLVSTL 599
>gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
Length = 1200
Score = 46.6 bits (109), Expect(2) = 6e-10
Identities = 23/47 (48%), Positives = 34/47 (72%), Gaps = 5/47 (10%)
Frame = +2
Query: 224 TFSELR*KVDINSEVGIVRNIALKKLRMYTDYEKAA-----MEKQAM 349
T LR +VD+N+EVG+VR+I LK+LR+YTDY + + +EKQ +
Sbjct: 598 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 644
Score = 42.4 bits (98), Expect(2) = 6e-10
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 127 FVEVSTIVIATNIKVLVNLYWIGIHRNPDQLVNIL 231
F E+S VI K+ VN W+GIHRNPD LV+ L
Sbjct: 565 FEEISPAVIPQATKIFVNGLWVGIHRNPDMLVSTL 599
>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
vinifera] gi|147841183|emb|CAN72948.1| hypothetical
protein VITISV_033708 [Vitis vinifera]
gi|302143287|emb|CBI21848.3| unnamed protein product
[Vitis vinifera]
Length = 1193
Score = 47.0 bits (110), Expect(2) = 6e-10
Identities = 22/47 (46%), Positives = 35/47 (74%), Gaps = 5/47 (10%)
Frame = +2
Query: 224 TFSELR*KVDINSEVGIVRNIALKKLRMYTDYEKAA-----MEKQAM 349
T +LR +VD+N+EVG++R+I LK+LR+YTDY + + +EKQ +
Sbjct: 591 TLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRL 637
Score = 42.0 bits (97), Expect(2) = 6e-10
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 127 FVEVSTIVIATNIKVLVNLYWIGIHRNPDQLVNIL 231
F E+S VI + K+ VN W+GIHRNPD LV L
Sbjct: 558 FEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTL 592
>gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis piasezkii]
Length = 951
Score = 47.0 bits (110), Expect(2) = 6e-10
Identities = 22/47 (46%), Positives = 35/47 (74%), Gaps = 5/47 (10%)
Frame = +2
Query: 224 TFSELR*KVDINSEVGIVRNIALKKLRMYTDYEKAA-----MEKQAM 349
T +LR +VD+N+EVG++R+I LK+LR+YTDY + + +EKQ +
Sbjct: 485 TLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRL 531
Score = 42.0 bits (97), Expect(2) = 6e-10
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 127 FVEVSTIVIATNIKVLVNLYWIGIHRNPDQLVNIL 231
F E+S VI + K+ VN W+GIHRNPD LV L
Sbjct: 452 FEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTL 486
>gb|AAY85199.1| RNA polymerase II second largest subunit [Cissus tuberosa]
Length = 951
Score = 47.0 bits (110), Expect(2) = 6e-10
Identities = 22/47 (46%), Positives = 35/47 (74%), Gaps = 5/47 (10%)
Frame = +2
Query: 224 TFSELR*KVDINSEVGIVRNIALKKLRMYTDYEKAA-----MEKQAM 349
T +LR +VD+N+EVG++R+I LK+LR+YTDY + + +EKQ +
Sbjct: 485 TLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRL 531
Score = 42.0 bits (97), Expect(2) = 6e-10
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 127 FVEVSTIVIATNIKVLVNLYWIGIHRNPDQLVNIL 231
F E+S VI + K+ VN W+GIHRNPD LV L
Sbjct: 452 FEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTL 486
>gb|AAS86826.1| RNA polymerase II second largest subunit, partial [Antirrhinum
majus]
Length = 575
Score = 46.6 bits (109), Expect(2) = 7e-10
Identities = 23/47 (48%), Positives = 34/47 (72%), Gaps = 5/47 (10%)
Frame = +2
Query: 224 TFSELR*KVDINSEVGIVRNIALKKLRMYTDYEKAA-----MEKQAM 349
T LR +VD+N+EVG+VR+I LK+LR+YTDY + + +EKQ +
Sbjct: 74 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 120
Score = 42.4 bits (98), Expect(2) = 7e-10
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 127 FVEVSTIVIATNIKVLVNLYWIGIHRNPDQLVNIL 231
F E+S VI K+ VN W+GIHRNPD LV+ L
Sbjct: 41 FEEISPAVIPQATKIFVNGLWVGIHRNPDMLVSTL 75
>emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis piasezkii]
Length = 551
Score = 47.0 bits (110), Expect(2) = 7e-10
Identities = 22/47 (46%), Positives = 35/47 (74%), Gaps = 5/47 (10%)
Frame = +2
Query: 224 TFSELR*KVDINSEVGIVRNIALKKLRMYTDYEKAA-----MEKQAM 349
T +LR +VD+N+EVG++R+I LK+LR+YTDY + + +EKQ +
Sbjct: 76 TLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRL 122
Score = 42.0 bits (97), Expect(2) = 7e-10
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 127 FVEVSTIVIATNIKVLVNLYWIGIHRNPDQLVNIL 231
F E+S VI + K+ VN W+GIHRNPD LV L
Sbjct: 43 FEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTL 77
>gb|AAW22887.1| RNA polymerase II second largest subunit [Lycopodium annotinum]
Length = 533
Score = 45.4 bits (106), Expect(2) = 7e-10
Identities = 22/47 (46%), Positives = 34/47 (72%), Gaps = 5/47 (10%)
Frame = +2
Query: 224 TFSELR*KVDINSEVGIVRNIALKKLRMYTDYEKAA-----MEKQAM 349
T +LR +VD+N+EVG+ R+I LK+LR+YTDY + + +EKQ +
Sbjct: 68 TLRQLRRQVDVNTEVGVXRDIRLKELRLYTDYGRCSRPLFIVEKQRL 114
Score = 43.5 bits (101), Expect(2) = 7e-10
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +1
Query: 127 FVEVSTIVIATNIKVLVNLYWIGIHRNPDQLVNIL 231
F E+S VI + K+ VN W+GIHRNP+ LVN L
Sbjct: 35 FEEISPAVIPQSTKIFVNGCWVGIHRNPEHLVNTL 69
>ref|XP_001766425.1| predicted protein [Physcomitrella patens]
gi|162682334|gb|EDQ68753.1| predicted protein
[Physcomitrella patens]
Length = 1185
Score = 47.4 bits (111), Expect(2) = 8e-10
Identities = 23/47 (48%), Positives = 35/47 (74%), Gaps = 5/47 (10%)
Frame = +2
Query: 224 TFSELR*KVDINSEVGIVRNIALKKLRMYTDYEKAA-----MEKQAM 349
T +LR +VD+N+EVG+VR+I LK+LR+YTDY + + +EKQ +
Sbjct: 583 TLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQRL 629
Score = 41.2 bits (95), Expect(2) = 8e-10
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +1
Query: 127 FVEVSTIVIATNIKVLVNLYWIGIHRNPDQLVNIL 231
F E+S VI + K+ VN W+GIHRNP+ LV L
Sbjct: 550 FEEISPAVIPNSTKIFVNGLWVGIHRNPELLVRTL 584
>emb|CAD92665.1| RNA polymerase II [Mimulus guttatus]
Length = 629
Score = 46.6 bits (109), Expect(2) = 8e-10
Identities = 23/47 (48%), Positives = 34/47 (72%), Gaps = 5/47 (10%)
Frame = +2
Query: 224 TFSELR*KVDINSEVGIVRNIALKKLRMYTDYEKAA-----MEKQAM 349
T LR +VD+N+EVG+VR+I LK+LR+YTDY + + +EKQ +
Sbjct: 74 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 120
Score = 42.0 bits (97), Expect(2) = 8e-10
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 127 FVEVSTIVIATNIKVLVNLYWIGIHRNPDQLVNIL 231
F E+S VI K+ VN W+GIHRNPD LV+ L
Sbjct: 41 FEEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTL 75
>gb|AAW22929.1| RNA polymerase II second largest subunit [Musa velutina]
Length = 561
Score = 46.6 bits (109), Expect(2) = 9e-10
Identities = 21/47 (44%), Positives = 35/47 (74%), Gaps = 5/47 (10%)
Frame = +2
Query: 224 TFSELR*KVDINSEVGIVRNIALKKLRMYTDYEKAA-----MEKQAM 349
T +LR ++D+N+EVG++R+I LK+LR+YTDY + + +EKQ +
Sbjct: 69 TLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRL 115
Score = 42.0 bits (97), Expect(2) = 9e-10
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 127 FVEVSTIVIATNIKVLVNLYWIGIHRNPDQLVNIL 231
F E+S VI + K+ VN W+GIHRNPD LV L
Sbjct: 36 FEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTL 70
>gb|AAY85192.1| RNA polymerase II second largest subunit [Argemone mexicana]
Length = 219
Score = 45.8 bits (107), Expect(2) = 9e-10
Identities = 22/44 (50%), Positives = 33/44 (75%), Gaps = 5/44 (11%)
Frame = +2
Query: 233 ELR*KVDINSEVGIVRNIALKKLRMYTDYEKAA-----MEKQAM 349
ELR +VDIN+EVG+VR + LK++R+YTDY + + +EKQ +
Sbjct: 77 ELRRRVDINTEVGVVREVRLKEVRLYTDYGRCSRPLFIVEKQRL 120
Score = 42.7 bits (99), Expect(2) = 9e-10
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = +1
Query: 127 FVEVSTIVIATNIKVLVNLYWIGIHRNPDQLVNIL 231
F E+S VI+ KV VN W+GIHRNP+ LVN L
Sbjct: 41 FEEISPAVISEATKVFVNGCWVGIHRNPENLVNNL 75
>gb|AFV74909.1| RNA polymerase II second largest subunit, partial [Balanophora
laxiflora]
Length = 569
Score = 46.2 bits (108), Expect(2) = 1e-09
Identities = 20/36 (55%), Positives = 29/36 (80%)
Frame = +2
Query: 224 TFSELR*KVDINSEVGIVRNIALKKLRMYTDYEKAA 331
T LR +VD+N+EVG+VR+I LK+LR+YTDY + +
Sbjct: 68 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 103
Score = 42.0 bits (97), Expect(2) = 1e-09
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 127 FVEVSTIVIATNIKVLVNLYWIGIHRNPDQLVNIL 231
F E+S VI T K+ VN W+GIHR+PD LV L
Sbjct: 35 FEEISPAVIPTATKIFVNGCWVGIHRDPDMLVKTL 69
>gb|EOY28253.1| DNA-directed RNA polymerase family protein isoform 1 [Theobroma
cacao]
Length = 1189
Score = 46.6 bits (109), Expect(2) = 1e-09
Identities = 23/47 (48%), Positives = 34/47 (72%), Gaps = 5/47 (10%)
Frame = +2
Query: 224 TFSELR*KVDINSEVGIVRNIALKKLRMYTDYEKAA-----MEKQAM 349
T LR +VD+N+EVG+VR+I LK+LR+YTDY + + +EKQ +
Sbjct: 589 TLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRL 635
Score = 41.2 bits (95), Expect(2) = 1e-09
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 127 FVEVSTIVIATNIKVLVNLYWIGIHRNPDQLVNIL 231
F E+S VI K+ VN W+G+HRNPD LV L
Sbjct: 556 FEEISPAVIPQATKIFVNGCWVGVHRNPDMLVTTL 590