BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00028681
         (771 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ESW27397.1| hypothetical protein PHAVU_003G198500g [Phaseolus...   120   7e-25
ref|XP_006579561.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   119   9e-25
ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   119   9e-25
ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc...   116   1e-23
ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   115   1e-23
ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [A...   115   2e-23
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   115   2e-23
ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   115   2e-23
gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobro...   114   3e-23
gb|EOY01387.1| Rna-dependent RNA polymerase, putative [Theobroma...   114   4e-23
ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Rici...   112   1e-22
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   112   2e-22
ref|XP_006469266.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   111   2e-22
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   111   2e-22
ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Popu...   111   2e-22
ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis...   111   3e-22
gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]              110   5e-22
gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]              110   7e-22
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola...   109   1e-21
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V...   108   2e-21

>gb|ESW27397.1| hypothetical protein PHAVU_003G198500g [Phaseolus vulgaris]
          Length = 1119

 Score =  120 bits (300), Expect = 7e-25
 Identities = 59/137 (43%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
 Frame = +2

Query: 20   YDKSLECDGFQAFLNDAMICKMQYDTKLRELMEFYGIQNEAEMIIGSIMKSSKDFIREKK 199
            YD+SLE +GF+AFL  A   K  Y  K+  LM FYG + E EM++G++   +    R+ +
Sbjct: 980  YDRSLEVNGFEAFLETASSHKEMYAQKMSSLMNFYGAETEDEMLLGNLQNRASYLQRDNR 1039

Query: 200  KYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEGS--LLS 373
            +YG MK  I   +++L+ +A  WF   C+ H +    ASAWYHVTYHP+Y+ + S   LS
Sbjct: 1040 RYGDMKDRILLSVKNLQREAKEWFETSCQPH-EYRPMASAWYHVTYHPSYYCQESSCFLS 1098

Query: 374  FPWIKYKLLLNIKRFNE 424
            FPWI  ++LL IK  N+
Sbjct: 1099 FPWIVGEVLLQIKSVNK 1115


>ref|XP_006579561.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X2 [Glycine
            max]
          Length = 941

 Score =  119 bits (299), Expect = 9e-25
 Identities = 58/139 (41%), Positives = 85/139 (61%), Gaps = 2/139 (1%)
 Frame = +2

Query: 2    RHCGIKYDKSLECDGFQAFLNDAMICKMQYDTKLRELMEFYGIQNEAEMIIGSIMKSSKD 181
            +H    YD+SLE +GF+AFL  A   K  Y  K+  LM+FYG + E EM++G++   +  
Sbjct: 796  KHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKMSSLMDFYGAETEDEMLLGNLQNRASY 855

Query: 182  FIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEG 361
              R+ ++YG MK  I   +++L+ +A  WF   C+ H +    ASAWYHVTYHP+Y+   
Sbjct: 856  LQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCEPH-EYKPMASAWYHVTYHPSYYCRE 914

Query: 362  S--LLSFPWIKYKLLLNIK 412
            S   LSFPWI  ++LL I+
Sbjct: 915  SPCFLSFPWIVGEILLQIR 933


>ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X1 [Glycine
            max]
          Length = 1121

 Score =  119 bits (299), Expect = 9e-25
 Identities = 58/139 (41%), Positives = 85/139 (61%), Gaps = 2/139 (1%)
 Frame = +2

Query: 2    RHCGIKYDKSLECDGFQAFLNDAMICKMQYDTKLRELMEFYGIQNEAEMIIGSIMKSSKD 181
            +H    YD+SLE +GF+AFL  A   K  Y  K+  LM+FYG + E EM++G++   +  
Sbjct: 976  KHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKMSSLMDFYGAETEDEMLLGNLQNRASY 1035

Query: 182  FIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEG 361
              R+ ++YG MK  I   +++L+ +A  WF   C+ H +    ASAWYHVTYHP+Y+   
Sbjct: 1036 LQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCEPH-EYKPMASAWYHVTYHPSYYCRE 1094

Query: 362  S--LLSFPWIKYKLLLNIK 412
            S   LSFPWI  ++LL I+
Sbjct: 1095 SPCFLSFPWIVGEILLQIR 1113


>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
            gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
            [Medicago truncatula]
          Length = 1308

 Score =  116 bits (290), Expect = 1e-23
 Identities = 59/136 (43%), Positives = 81/136 (59%), Gaps = 1/136 (0%)
 Frame = +2

Query: 20   YDKSLECDGFQAFLNDAMICKMQYDTKLRELMEFYGIQNEAEMIIGSIMKSSKDFIREKK 199
            YD  LE DGF+ FL  A+  +  Y  K+  LM FYG   E EM+ G++   +    R+ +
Sbjct: 985  YDHQLEVDGFEVFLETALSHRDMYAQKMISLMSFYGATTEDEMLTGNLQNRASYLQRDNR 1044

Query: 200  KYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEGS-LLSF 376
            +YG MK  I   ++DL+ +A  WF + C+ H +    ASAWYHVTYHP Y+ E S  LSF
Sbjct: 1045 RYGDMKDRILISVKDLQLEAKEWFESDCQPH-EYQLMASAWYHVTYHPKYYIESSTFLSF 1103

Query: 377  PWIKYKLLLNIKRFNE 424
            PWI   +LL+IK  N+
Sbjct: 1104 PWIVGDILLHIKSANK 1119



 Score = 60.1 bits (144), Expect = 8e-07
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
 Frame = +2

Query: 149  IIGSIMKSSKDFIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAFASAWYH 328
            ++ S M+ + +F+            I  K+ DL+ +   WF + C+ H +    ASAWYH
Sbjct: 1212 LVESTMQLTSNFVSSGNFLSKKHMIINLKLMDLQLEVKEWFESDCQPH-EHQLMASAWYH 1270

Query: 329  VTYHPNYWSEGS-LLSFPWIKYKLLLNIKRFN 421
            V +HP Y+ + S  +SFPWI   +LL +K  N
Sbjct: 1271 VIHHPKYYHKSSNFVSFPWIVGDILLYVKHAN 1302


>ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Citrus sinensis]
          Length = 1131

 Score =  115 bits (289), Expect = 1e-23
 Identities = 60/139 (43%), Positives = 82/139 (58%), Gaps = 1/139 (0%)
 Frame = +2

Query: 20   YDKSLECDGFQAFLNDAMICKMQYDTKLRELMEFYGIQNEAEMIIGSIMKSSKDFIREKK 199
            YD  LE DGF+AFL  A   K  Y+ ++  LM +YG   E E++ G++   +    R+ +
Sbjct: 994  YDHDLEVDGFEAFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNR 1053

Query: 200  KYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEG-SLLSF 376
            +YG MK  I    ++L+N+A  WF + CK   +    ASAWYHVTY P+Y  E  +LLSF
Sbjct: 1054 RYGDMKDRILLSAKNLQNEAKEWFGSSCK-ENEHPQLASAWYHVTYSPSYCKERMALLSF 1112

Query: 377  PWIKYKLLLNIKRFNETKA 433
            PWI   +LLNIK  N  KA
Sbjct: 1113 PWIVGDILLNIKSVNSRKA 1131


>ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [Amborella trichopoda]
            gi|548839203|gb|ERM99496.1| hypothetical protein
            AMTR_s00088p00026960 [Amborella trichopoda]
          Length = 1107

 Score =  115 bits (288), Expect = 2e-23
 Identities = 56/133 (42%), Positives = 87/133 (65%)
 Frame = +2

Query: 20   YDKSLECDGFQAFLNDAMICKMQYDTKLRELMEFYGIQNEAEMIIGSIMKSSKDFIREKK 199
            YD +L   GF+ F+  A+  K  Y  KL+ELM++YG ++E+E++ G+I K S    R+ +
Sbjct: 971  YDTNLLAKGFEEFIELAVKHKEAYGQKLQELMDYYGAESESEILSGNISKKSGYLQRDNR 1030

Query: 200  KYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEGSLLSFP 379
            KYG +K  I   +++L+ +A  WF + C+ + + S  ASAWYHVTY P+++S+ +  SFP
Sbjct: 1031 KYGEVKDRILIAVKNLQREAQGWFKSSCEPN-QSSKLASAWYHVTYRPDHFSKVNFFSFP 1089

Query: 380  WIKYKLLLNIKRF 418
            WI   +LLNIK F
Sbjct: 1090 WILADVLLNIKAF 1102


>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
          Length = 1122

 Score =  115 bits (287), Expect = 2e-23
 Identities = 59/135 (43%), Positives = 79/135 (58%), Gaps = 1/135 (0%)
 Frame = +2

Query: 20   YDKSLECDGFQAFLNDAMICKMQYDTKLRELMEFYGIQNEAEMIIGSIMKSSKDFIREKK 199
            YD  LE +GF+AFL  A   K  Y  K+  LM FY  + E EM+ G++   +    R+ +
Sbjct: 984  YDHQLEVNGFEAFLETASSHKEMYAQKMSSLMSFYDAETEDEMLTGNLQNRASYLQRDNR 1043

Query: 200  KYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEGS-LLSF 376
            +YG MK  I   ++DL+ +A  WF + C+ H +    ASAWYHVTYHP Y  E S  LSF
Sbjct: 1044 RYGDMKDRILISVKDLQREAKEWFESDCQPH-EYQLMASAWYHVTYHPKYSHESSTFLSF 1102

Query: 377  PWIKYKLLLNIKRFN 421
            PWI   +LL+IK  N
Sbjct: 1103 PWIVGDILLHIKSVN 1117


>ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
          Length = 1120

 Score =  115 bits (287), Expect = 2e-23
 Identities = 57/142 (40%), Positives = 85/142 (59%), Gaps = 2/142 (1%)
 Frame = +2

Query: 2    RHCGIKYDKSLECDGFQAFLNDAMICKMQYDTKLRELMEFYGIQNEAEMIIGSIMKSSKD 181
            +H    YD+SLE +GF+AFL  A   K  Y  K+  LM+FYG + E EM++G++   +  
Sbjct: 975  KHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKMSSLMDFYGAETEDEMLLGNVQNRASY 1034

Query: 182  FIREKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEG 361
              R+ ++YG MK  I   +++L+ +A  WF   C+  R+    ASAWYHVTYH +++ + 
Sbjct: 1035 LQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCQ-PREYKPMASAWYHVTYHRSHYCQE 1093

Query: 362  S--LLSFPWIKYKLLLNIKRFN 421
            S   LSFPWI   +LL I+  N
Sbjct: 1094 SPCFLSFPWIVGDILLQIRSVN 1115


>gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobroma cacao]
            gi|508773407|gb|EOY20663.1| RNA-dependent RNA polymerase
            2 isoform 1 [Theobroma cacao]
          Length = 1149

 Score =  114 bits (286), Expect = 3e-23
 Identities = 62/147 (42%), Positives = 87/147 (59%), Gaps = 2/147 (1%)
 Frame = +2

Query: 20   YDKSLECDGFQAFLNDAMICKMQYDTKLRELMEFYGIQNEAEMIIGSIMKSSKDFIREKK 199
            YD  LE +GF+AFL+ A   K  Y+ K+  LM +Y +++E E++ G++   +    R+ +
Sbjct: 986  YDHDLEVNGFEAFLSTAQTHKDMYEEKMSFLMNYYEVESEDEILTGNMRNKATFLQRDNR 1045

Query: 200  KYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEG--SLLS 373
            +YG MK  I   +++L+ +A   F N CKV  +    ASAWYHVTYHPNY  E   S LS
Sbjct: 1046 RYGDMKDRILLSMKNLQREARERFENSCKV-GEHQRLASAWYHVTYHPNYCQESMKSCLS 1104

Query: 374  FPWIKYKLLLNIKRFNETKACQQREAP 454
            FPWI   +LL IK  N  +   QRE P
Sbjct: 1105 FPWIVGDILLKIKSVNSREI--QREQP 1129


>gb|EOY01387.1| Rna-dependent RNA polymerase, putative [Theobroma cacao]
          Length = 1125

 Score =  114 bits (285), Expect = 4e-23
 Identities = 65/154 (42%), Positives = 88/154 (57%), Gaps = 13/154 (8%)
 Frame = +2

Query: 20   YDKSLECDGFQAFLNDAMICKMQYDTKLRELMEFYGIQNEAEMIIGSIMKSSKDFIREKK 199
            YD  +E DGF+A++NDA   K +YD KL  LM +YGI+ EAEMI G IMK SK F R + 
Sbjct: 956  YDSDMEVDGFEAYVNDAFHYKSEYDNKLSNLMRYYGIKTEAEMISGCIMKMSKSFDRRRD 1015

Query: 200  KYGGMKQEIQEKIRDLRNDAHNWFINCCKVH------RKDSAFASAWYHVTYHPNYW--- 352
                  + +   ++ L+N+   WF N  + H      R   A ASAWYHVTYHP++W   
Sbjct: 1016 -----LETVVLAVKSLKNEVKGWF-NKKESHELKPNERNLFAKASAWYHVTYHPSFWGRY 1069

Query: 353  SEG----SLLSFPWIKYKLLLNIKRFNETKACQQ 442
            +EG      +SFPW  Y  LL IK  +  K+ ++
Sbjct: 1070 NEGMDREQFISFPWCVYDKLLQIKENSSKKSLER 1103


>ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 983

 Score =  112 bits (281), Expect = 1e-22
 Identities = 56/135 (41%), Positives = 80/135 (59%), Gaps = 1/135 (0%)
 Frame = +2

Query: 20   YDKSLECDGFQAFLNDAMICKMQYDTKLRELMEFYGIQNEAEMIIGSIMKSSKDFIREKK 199
            YD  LE  GF+ F+  A+  K  Y  KL  LM++Y  + E E++ G++   +    R+ +
Sbjct: 828  YDHDLEVKGFEEFVEIAISHKDMYVEKLSGLMDYYEAKKEDEILTGNLQNKAMYLQRDNR 887

Query: 200  KYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEG-SLLSF 376
            +YG  K  I   ++ L+ +A  WF +CC+   K    ASAWYHVTYHP+Y+ EG + LSF
Sbjct: 888  RYGDTKDRILISVKSLQKEAKEWFESCCQAKEK-QRLASAWYHVTYHPSYFQEGITCLSF 946

Query: 377  PWIKYKLLLNIKRFN 421
            PWI   +LLNIK  N
Sbjct: 947  PWIVADILLNIKSAN 961


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  112 bits (279), Expect = 2e-22
 Identities = 65/150 (43%), Positives = 85/150 (56%), Gaps = 13/150 (8%)
 Frame = +2

Query: 20   YDKSLECDGFQAFLNDAMICKMQYDTKLRELMEFYGIQNEAEMIIGSIMKSSKDFIREKK 199
            YD  +E DGF+ +++DA   K  YD KL  LME+YGI+ EAE++ GS MK SK F +++ 
Sbjct: 970  YDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMKMSKSFTKKRD 1029

Query: 200  KYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDS------AFASAWYHVTYHPNYW--- 352
                  + I   +R L+ +A +WF    K    DS      A ASAWYHVTYH NYW   
Sbjct: 1030 -----AEAIGMAVRSLKKEARSWFNE--KGSGLDSQADDVDAKASAWYHVTYHHNYWGCY 1082

Query: 353  SEG----SLLSFPWIKYKLLLNIKRFNETK 430
            +EG      LSFPW  Y  L+ IKR N  +
Sbjct: 1083 NEGMNRDHFLSFPWCVYDKLIQIKRRNSAR 1112


>ref|XP_006469266.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 292

 Score =  111 bits (278), Expect = 2e-22
 Identities = 60/141 (42%), Positives = 81/141 (57%), Gaps = 9/141 (6%)
 Frame = +2

Query: 20  YDKSLECDGFQAFLNDAMICKMQYDTKLRELMEFYGIQNEAEMIIGSIMKSSKDFIREKK 199
           YD  +E DGF+  ++DA+  K  YD KL  LM++YGI+ EAE++ GSIMK SK F + + 
Sbjct: 134 YDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD 193

Query: 200 KYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAF--ASAWYHVTYHPNYW------- 352
                 + I   +R LR +A  WF        +D A+  ASAWYHVTYHP+YW       
Sbjct: 194 -----AEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNHGM 248

Query: 353 SEGSLLSFPWIKYKLLLNIKR 415
           +    LSFPW  Y  L+ IK+
Sbjct: 249 NRDHFLSFPWCVYDRLVEIKK 269


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  111 bits (278), Expect = 2e-22
 Identities = 60/141 (42%), Positives = 81/141 (57%), Gaps = 9/141 (6%)
 Frame = +2

Query: 20   YDKSLECDGFQAFLNDAMICKMQYDTKLRELMEFYGIQNEAEMIIGSIMKSSKDFIREKK 199
            YD  +E DGF+  ++DA+  K  YD KL  LM++YGI+ EAE++ GSIMK SK F + + 
Sbjct: 974  YDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD 1033

Query: 200  KYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAF--ASAWYHVTYHPNYW------- 352
                  + I   +R LR +A  WF        +D A+  ASAWYHVTYHP+YW       
Sbjct: 1034 -----AEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNHGM 1088

Query: 353  SEGSLLSFPWIKYKLLLNIKR 415
            +    LSFPW  Y  L+ IK+
Sbjct: 1089 NRDHFLSFPWCVYDRLVEIKK 1109


>ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Populus trichocarpa]
            gi|222868578|gb|EEF05709.1| hypothetical protein
            POPTR_0015s08500g [Populus trichocarpa]
          Length = 1110

 Score =  111 bits (278), Expect = 2e-22
 Identities = 57/139 (41%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
 Frame = +2

Query: 20   YDKSLECDGFQAFLNDAMICKMQYDTKLRELMEFYGIQNEAEMIIGSIMKSSKDFIREKK 199
            YD+ LE  GF+ FL  A I K +Y  K+  LM++YG + E E++ G++        R+ +
Sbjct: 973  YDQDLEVKGFEDFLGIASIYKEKYMEKMSTLMDYYGAKTEDEILTGNLRHRPTYLQRDNR 1032

Query: 200  KYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEG-SLLSF 376
            KYG +K  I   +++L+ +A  WF + C    +    ASAWYHVTYHP Y+ E  + LSF
Sbjct: 1033 KYGDVKDRILVSLKNLKKEAKEWFESSCN-PTEHQCMASAWYHVTYHPTYFHERMNCLSF 1091

Query: 377  PWIKYKLLLNIKRFNETKA 433
            PWI   +LLNIK  N   A
Sbjct: 1092 PWIVGDILLNIKSLNSRNA 1110


>ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis sativus]
            gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
            2 [Cucumis sativus]
          Length = 1117

 Score =  111 bits (277), Expect = 3e-22
 Identities = 57/138 (41%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
 Frame = +2

Query: 20   YDKSLECDGFQAFLNDAMICKMQYDTKLRELMEFYGIQNEAEMIIGSIMKSSKDFIREKK 199
            YD  LE DGF+AFL  A   K  Y  K+  LM +YG + E E+++G +   +    R+ +
Sbjct: 978  YDYDLEVDGFEAFLEIAETYKEMYIEKMSILMNYYGAEYEDEILMGDLRSRASYLQRDNR 1037

Query: 200  KYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEGSL-LSF 376
            KYG MK  I   +++LR +   WF N C    +    ASAWYHVTYHP+Y+ E     SF
Sbjct: 1038 KYGDMKDRILLSVKNLRKEVKEWFENSCDPLNR-RMMASAWYHVTYHPSYFKEDMFYFSF 1096

Query: 377  PWIKYKLLLNIKRFNETK 430
            PW    +LLNIK  N  +
Sbjct: 1097 PWAVSDVLLNIKAMNSKR 1114


>gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
          Length = 1147

 Score =  110 bits (275), Expect = 5e-22
 Identities = 51/136 (37%), Positives = 84/136 (61%), Gaps = 1/136 (0%)
 Frame = +2

Query: 20   YDKSLECDGFQAFLNDAMICKMQYDTKLRELMEFYGIQNEAEMIIGSIMKSSKDFIREKK 199
            YD  LE +GF++ ++ A   K  Y+ ++  LM +Y ++ E E++ G+I   ++  +R+ +
Sbjct: 978  YDHDLEVNGFESLISVAETHKEMYEERMSLLMSYYDVEYEDEILTGNIYNKAQFLLRDNR 1037

Query: 200  KYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEG-SLLSF 376
            +YG MK+ I   ++DL+ +A  WF + C    +    ASAWY+VTYHPNY+ E  + LSF
Sbjct: 1038 RYGEMKERIVLSVKDLQREAKEWFKSSCSKADEHQKLASAWYYVTYHPNYFQERMNSLSF 1097

Query: 377  PWIKYKLLLNIKRFNE 424
            PWI   +LL +K  N+
Sbjct: 1098 PWIVGDILLRVKSRNK 1113


>gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
          Length = 1147

 Score =  110 bits (274), Expect = 7e-22
 Identities = 51/138 (36%), Positives = 85/138 (61%), Gaps = 1/138 (0%)
 Frame = +2

Query: 14   IKYDKSLECDGFQAFLNDAMICKMQYDTKLRELMEFYGIQNEAEMIIGSIMKSSKDFIRE 193
            + YD  LE +GF++ ++ A   K  Y+ ++  LM +Y ++ E E++ G++   ++  +R+
Sbjct: 976  LAYDHDLEVNGFESLISVAETHKEMYEERMSLLMSYYDVEYEDEILTGNMYNKAQFLLRD 1035

Query: 194  KKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEG-SLL 370
             ++YG MK+ I   ++DL+ +A  WF + C    +    ASAWY+VTYHPNY+ E  + L
Sbjct: 1036 NRRYGEMKERIVLSVKDLQREAKEWFKSSCSKADEHQKLASAWYYVTYHPNYFEERMNSL 1095

Query: 371  SFPWIKYKLLLNIKRFNE 424
            SFPWI   +LL IK  N+
Sbjct: 1096 SFPWIVGDILLRIKSRNK 1113


>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  109 bits (272), Expect = 1e-21
 Identities = 60/142 (42%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
 Frame = +2

Query: 20   YDKSLECDGFQAFLNDAMICKMQYDTKLRELMEFYGIQNEAEMIIGSIMKSSKDFIREKK 199
            YD  LE DGF+ ++++A   K +YD+KL  LM++YGI+ EAE++ G IMK+SK F R K 
Sbjct: 806  YDADLEVDGFEDYIDEAFDYKTEYDSKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKD 865

Query: 200  KYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAF---ASAWYHVTYHPNYW------ 352
                  + I   +R LR +A  WF    K H         ASAWYHVTYHP YW      
Sbjct: 866  -----AEAISIAVRALRKEARTWF----KRHNDIDDMLPKASAWYHVTYHPTYWGCYNQG 916

Query: 353  -SEGSLLSFPWIKYKLLLNIKR 415
                  +SFPW  Y  L+ IK+
Sbjct: 917  LKRDHFISFPWCVYDQLIQIKK 938


>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
            gi|297733815|emb|CBI15062.3| unnamed protein product
            [Vitis vinifera]
          Length = 1127

 Score =  108 bits (271), Expect = 2e-21
 Identities = 57/142 (40%), Positives = 79/142 (55%), Gaps = 1/142 (0%)
 Frame = +2

Query: 11   GIKYDKSLECDGFQAFLNDAMICKMQYDTKLRELMEFYGIQNEAEMIIGSIMKSSKDFIR 190
            G  YD  LE DGF+ FL  A + K  Y  K+  LM FYG ++E EM+ G++        R
Sbjct: 975  GAAYDHDLEVDGFETFLEIAKLHKEMYAEKMATLMNFYGAESEDEMLTGNLRNKLMYLQR 1034

Query: 191  EKKKYGGMKQEIQEKIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSE-GSL 367
            + +++  MK  I   ++ L+ +A  W    CK H+     ASAWYHVTYH  + S+  + 
Sbjct: 1035 DNRRFTEMKDRILISVKSLQKEAKEWLYGSCKPHQHQK-MASAWYHVTYHSTFSSQTPNF 1093

Query: 368  LSFPWIKYKLLLNIKRFNETKA 433
            LSFPWI  ++LL IK  N  KA
Sbjct: 1094 LSFPWIVGEVLLVIKSANSRKA 1115