BLASTX nr result
ID: Ephedra25_contig00027626
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00027626
(557 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006577547.1| PREDICTED: uncharacterized protein LOC102662... 48 2e-15
emb|CCI55376.1| PH01B035L11.21 [Phyllostachys edulis] 49 7e-15
gb|ABM55238.1| integrase [Beta vulgaris] 47 2e-14
gb|ABH08430.1| putative integrase [Beta vulgaris] 47 2e-14
gb|EOY11267.1| Uncharacterized protein TCM_026511 [Theobroma cacao] 77 3e-12
emb|CAN81156.1| hypothetical protein VITISV_016610 [Vitis vinifera] 69 6e-10
ref|XP_004509513.1| PREDICTED: uncharacterized protein LOC101489... 69 1e-09
gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-ty... 68 2e-09
emb|CAD39343.2| OSJNBa0094O15.12 [Oryza sativa Japonica Group] 68 2e-09
gb|ABB46643.2| retrotransposon protein, putative, Ty1-copia subc... 67 2e-09
gb|AAM08718.1|AC116601_11 Putative gag-pol polyprotein [Oryza sa... 67 2e-09
emb|CAN81839.1| hypothetical protein VITISV_033739 [Vitis vinifera] 67 3e-09
gb|ABA96551.1| retrotransposon protein, putative, Ty1-copia subc... 66 5e-09
gb|ABF95851.1| retrotransposon protein, putative, Ty1-copia subc... 65 1e-08
gb|ABE88110.1| Reverse transcriptase (RNA-dependent DNA polymera... 65 1e-08
gb|ABA97696.1| retrotransposon protein, putative, unclassified [... 64 2e-08
emb|CAD40455.2| OSJNBa0041M21.13 [Oryza sativa Japonica Group] g... 63 4e-08
gb|AAO73523.1| gag-pol polyprotein [Glycine max] 63 4e-08
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi... 63 5e-08
gb|AAC64917.1| gag-pol polyprotein [Glycine max] 62 7e-08
>ref|XP_006577547.1| PREDICTED: uncharacterized protein LOC102662042 [Glycine max]
Length = 1857
Score = 48.1 bits (113), Expect(3) = 2e-15
Identities = 23/45 (51%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Frame = -3
Query: 552 LDIKSAFLHGEISEEIYMK*PEGFIQ--NPNKVCKLIKALYGLNR 424
+D+KSAFL+G ++EE+Y++ P+GF +P+ V KL KALYGL +
Sbjct: 1471 MDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYKLKKALYGLKQ 1515
Score = 42.7 bits (99), Expect(3) = 2e-15
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -3
Query: 225 FEVTGLWNATYHLEIQIFQKEDSLILHHDAYIKKLLHNFNLNKGRGRKIPLYPSYNILKD 46
FE++ + TY L +Q+ Q EDS+ L Y K ++ F + ++ P + KD
Sbjct: 1582 FEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKD 1641
Query: 45 EE-NKVDYEKFRSLI 4
E VD +RS+I
Sbjct: 1642 EAGTSVDQSLYRSMI 1656
Score = 37.0 bits (84), Expect(3) = 2e-15
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 448 KSLIWLKQTPTTWYDKLEKHLLNKGLTKSGADSNL 344
K+L LKQ P WY++L K L +G K G D L
Sbjct: 1508 KALYGLKQAPRAWYERLTKFLTQQGYRKGGIDKTL 1542
>emb|CCI55376.1| PH01B035L11.21 [Phyllostachys edulis]
Length = 2029
Score = 48.5 bits (114), Expect(3) = 7e-15
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Frame = -3
Query: 552 LDIKSAFLHGEISEEIYMK*PEGF--IQNPNKVCKLIKALYGLNR 424
+D+KSAFL+G I EE+Y++ P GF + PN V KL KALYGL +
Sbjct: 1579 MDVKSAFLNGLIEEEVYVRQPPGFENPKYPNHVFKLSKALYGLKQ 1623
Score = 40.8 bits (94), Expect(3) = 7e-15
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = -3
Query: 225 FEVTGLWNATYHLEIQIFQKEDSLILHHDAYIKKLLHNFNLNKGRGRKIPLYPSYNILKD 46
FE++ + ++ L QI Q + LH Y + LL F+++ G+ P+ + + D
Sbjct: 1690 FEMSMMGELSFFLGFQIKQTREGTFLHQGKYTRDLLKRFDMSDGKPVSTPMASTAYLDPD 1749
Query: 45 EENK-VDYEKFRSLI 4
E+ + VD ++FRS+I
Sbjct: 1750 EDGEPVDQKEFRSMI 1764
Score = 36.2 bits (82), Expect(3) = 7e-15
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 448 KSLIWLKQTPTTWYDKLEKHLLNKGLTKSGADSNLF 341
K+L LKQ P WY++L+ +LL+ G D LF
Sbjct: 1616 KALYGLKQAPRAWYERLKSYLLSHGFEMGKVDKTLF 1651
>gb|ABM55238.1| integrase [Beta vulgaris]
Length = 1516
Score = 47.4 bits (111), Expect(3) = 2e-14
Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Frame = -3
Query: 552 LDIKSAFLHGEISEEIYMK*PEGFIQN--PNKVCKLIKALYGLNR 424
+D+K AFL+G ++E++Y++ P GF N PN V KL KALYGL +
Sbjct: 1117 MDVKCAFLNGYLNEDVYVEQPPGFENNNLPNHVYKLDKALYGLKQ 1161
Score = 41.2 bits (95), Expect(3) = 2e-14
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = -3
Query: 225 FEVTGLWNATYHLEIQIFQKEDSLILHHDAYIKKLLHNFNLNKGRGRKIPLYPSYNILKD 46
FE++ + + L +QI Q E +I+H YIK+LL + L + P+ S + +D
Sbjct: 1228 FEMSMMGELNFFLGLQIKQTEKGIIVHQQKYIKELLKKYGLENSKINHTPMGTSTRLDED 1287
Query: 45 E-ENKVDYEKFRSLI 4
VD K+R +I
Sbjct: 1288 SIGTSVDQTKYRGMI 1302
Score = 35.8 bits (81), Expect(3) = 2e-14
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 448 KSLIWLKQTPTTWYDKLEKHLLNKGLTKSGADSNLF 341
K+L LKQ P +WY++L K LL + D LF
Sbjct: 1154 KALYGLKQAPRSWYERLSKFLLENNFKRGKVDKTLF 1189
>gb|ABH08430.1| putative integrase [Beta vulgaris]
Length = 1516
Score = 47.4 bits (111), Expect(3) = 2e-14
Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Frame = -3
Query: 552 LDIKSAFLHGEISEEIYMK*PEGFIQN--PNKVCKLIKALYGLNR 424
+D+K AFL+G ++E++Y++ P GF N PN V KL KALYGL +
Sbjct: 1117 MDVKCAFLNGYLNEDVYVEQPPGFENNNLPNHVYKLDKALYGLKQ 1161
Score = 41.2 bits (95), Expect(3) = 2e-14
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = -3
Query: 225 FEVTGLWNATYHLEIQIFQKEDSLILHHDAYIKKLLHNFNLNKGRGRKIPLYPSYNILKD 46
FE++ + + L +QI Q E +I+H YIK+LL + L + P+ S + +D
Sbjct: 1228 FEMSMMGELNFFLGLQIKQTEKGIIVHQQKYIKELLKKYGLENSKINHTPMGTSTRLDED 1287
Query: 45 E-ENKVDYEKFRSLI 4
VD K+R +I
Sbjct: 1288 SIGTSVDQTKYRGMI 1302
Score = 35.8 bits (81), Expect(3) = 2e-14
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 448 KSLIWLKQTPTTWYDKLEKHLLNKGLTKSGADSNLF 341
K+L LKQ P +WY++L K LL + D LF
Sbjct: 1154 KALYGLKQAPRSWYERLSKFLLENNFKRGKVDKTLF 1189
>gb|EOY11267.1| Uncharacterized protein TCM_026511 [Theobroma cacao]
Length = 1318
Score = 77.0 bits (188), Expect = 3e-12
Identities = 63/201 (31%), Positives = 99/201 (49%), Gaps = 17/201 (8%)
Frame = -3
Query: 555 YLDIKSAFLHGEISEEIYMK*PEGFIQ--NPNKVCKLIKALYGLNRHLRPGMIS*RNIS* 382
++D+KSAFL+G ISE+IY++ PEGF++ +KVCKLIKALYGL + R + I
Sbjct: 912 HMDVKSAFLNGTISEDIYVEQPEGFVEKGKEDKVCKLIKALYGLKQAPRAWY---KKI-- 966
Query: 381 IKD*LSQEQTLTCSTLQKTKPSYYNSFSC*LYFL--------------NRG*CN*NV*VQ 244
D + CS +++P+ Y S L N+ N +
Sbjct: 967 --DAYLRSNKFFCS---ESEPTLYVKSSLGKIQLIVSVYVDDLLITGPNKSDLN---SFR 1018
Query: 243 NKLEEVFEVTGLWNATYHLEIQIFQKEDSLILHHDAYIKKLLHNFNLNKGRGRKIPLYPS 64
NK++ F+++ L +Y L ++I Q+ D + LH Y +LL F + + PL
Sbjct: 1019 NKMKSEFDMSDLGEMSYFLGLEIQQRSDFICLHQKKYAGELLKRFKMEGCKPVSTPLTTG 1078
Query: 63 YNILKDE-ENKVDYEKFRSLI 4
+ KD+ VD ++R LI
Sbjct: 1079 TKLCKDDGSTLVDVTQYRKLI 1099
>emb|CAN81156.1| hypothetical protein VITISV_016610 [Vitis vinifera]
Length = 1021
Score = 69.3 bits (168), Expect = 6e-10
Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 6/189 (3%)
Frame = -3
Query: 552 LDIKSAFLHGEISEEIYMK*PEGFIQ--NPNKVCKLIKALYGLNRHLRPGMIS*RNIS*I 379
LD+KSAFLHGE++E + ++ P G++Q N KV L KALYGL + R S +
Sbjct: 622 LDVKSAFLHGELNEVVXVEQPCGYVQKGNEXKVYXLKKALYGLKQAPR-AWYSRIEAYFM 680
Query: 378 KD*LSQ---EQTLTCSTLQKTKPSYYNSFSC*LYFLNRG*CN*NV*VQNKLEEVFEVTGL 208
K+ + E TL T ++ K + + L F +N ++ F++T L
Sbjct: 681 KEGFEKCDYEHTLFIXTSKEGKXLIVSLYVDDLIFTGNDELMFXE-FKNSMKHEFDMTDL 739
Query: 207 WNATYHLEIQIFQKEDSLILHHDAYIKKLLHNFNLNKGRGRKIPLYPSYNILKDEEN-KV 31
Y L +++ Q D + + Y ++L F ++K P+ PS+ ++KDE KV
Sbjct: 740 GKMRYFLGLEVLQISDGVFISQKKYALEVLKQFGMDKSNFVHNPIVPSFKLMKDEGGVKV 799
Query: 30 DYEKFRSLI 4
D ++ ++
Sbjct: 800 DNTYYKQIV 808
>ref|XP_004509513.1| PREDICTED: uncharacterized protein LOC101489680, partial [Cicer
arietinum]
Length = 1036
Score = 68.6 bits (166), Expect = 1e-09
Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 6/189 (3%)
Frame = -3
Query: 552 LDIKSAFLHGEISEEIYMK*PEGFIQ--NPNKVCKLIKALYGLNRHLRPGMIS*RNIS*I 379
+D+KSAFL+G ++E++Y+K P GF PN V KL KALYGL + R
Sbjct: 107 MDVKSAFLNGFLNEQVYVKQPPGFENQAKPNHVFKLTKALYGLKQAPRAWY--------- 157
Query: 378 KD*LSQ---EQTLTCSTLQKTKPSYYNSFSC*LYFLNRG*CN*NV*VQNKLEEVFEVTGL 208
+ LS E + T FS ++ FE++ +
Sbjct: 158 -ERLSSFLIENNFQRGKIDTTLFKLCEDFS------------------KLMQSEFEMSMM 198
Query: 207 WNATYHLEIQIFQKEDSLILHHDAYIKKLLHNFNLNKGRGRKIPLYPSYNILKDEENK-V 31
Y L +QI Q E + + + YIK LL + +N+ + P++PS ++ KDE K V
Sbjct: 199 GELRYFLGLQIKQYEKGIFVCQEKYIKDLLIKYKMNESKIMTTPMHPSTSLEKDENGKSV 258
Query: 30 DYEKFRSLI 4
+++R +I
Sbjct: 259 SEKEYRGMI 267
>gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase
aspartic, catalytic [Medicago truncatula]
Length = 1715
Score = 67.8 bits (164), Expect = 2e-09
Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 22/205 (10%)
Frame = -3
Query: 552 LDIKSAFLHGEISEEIYMK*PEGF--IQNPNKVCKLIKALYGLNRHLRPGMIS*RNIS*I 379
+D+KSAFL+G I EE+Y+K P GF +++P+ V KL K+LYGL + R N I
Sbjct: 1315 MDVKSAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFL-I 1373
Query: 378 KD*LSQEQ---TLTCSTLQK----------------TKPSYYNSFSC*LYFLNRG*CN*N 256
K+ + Q TL TL+K T S FS
Sbjct: 1374 KNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFS-------------- 1419
Query: 255 V*VQNKLEEVFEVTGLWNATYHLEIQIFQKEDSLILHHDAYIKKLLHNFNLNKGRGRKIP 76
+++ FE++ + + L IQI Q ++ + +H Y K+LL F L + P
Sbjct: 1420 ----KLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTP 1475
Query: 75 LYPSYNILKDEENK-VDYEKFRSLI 4
++P+ + K++ VD + +R +I
Sbjct: 1476 MHPTCTLSKEDTGTVVDQKLYRGMI 1500
>emb|CAD39343.2| OSJNBa0094O15.12 [Oryza sativa Japonica Group]
Length = 1739
Score = 67.8 bits (164), Expect = 2e-09
Identities = 61/193 (31%), Positives = 94/193 (48%), Gaps = 10/193 (5%)
Frame = -3
Query: 552 LDIKSAFLHGEISEEIYMK*PEGF--IQNPNKVCKLIKALYGLNRHLRPGMIS*RNIS*I 379
+D+KSAFL+GEI+E ++++ P GF +NPN V KL KALYGL + R R+
Sbjct: 967 MDVKSAFLNGEIAELVFVEQPPGFEDPKNPNHVYKLSKALYGLKQAPRAWYERLRDFLLS 1026
Query: 378 KD*LSQEQTLTCSTLQKTKPSYYNSFSC*LYF-------LNRG*CN*NV*VQNKLEEVFE 220
KD + T TK + F C +Y N+ C + + FE
Sbjct: 1027 KD----FKIGKVDTTLFTKIIGDDFFVCQIYVDDFIFGSTNKVFCK---GFGDMMSREFE 1079
Query: 219 VTGLWNATYHLEIQIFQKEDSLILHHDAYIKKLLHNFNLNKGRGRKIPLYPSYNILKDEE 40
++ + ++ L +QI Q +D + YIK LL F L + K P+ + ++ DE
Sbjct: 1080 MSMIEELSFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEG 1139
Query: 39 NK-VDYEKFRSLI 4
K VD + +RS+I
Sbjct: 1140 GKPVDLKLYRSMI 1152
>gb|ABB46643.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1604
Score = 67.4 bits (163), Expect = 2e-09
Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 11/194 (5%)
Frame = -3
Query: 552 LDIKSAFLHGEISEEIYMK*PEGF--IQNPNKVCKLIKALYGLNRHLRPGMIS*RNIS*I 379
+D+KSAFL+GEI+E ++++ P GF +NPN V KL KALYGL + R R+
Sbjct: 1053 MDVKSAFLNGEIAELVFVEQPLGFEDPKNPNHVYKLSKALYGLKQAPRAWYERLRDFL-- 1110
Query: 378 KD*LSQEQTL-TCSTLQKTKPSYYNSFSC*LYF-------LNRG*CN*NV*VQNKLEEVF 223
LS+ + T TK + F C +Y N C N + F
Sbjct: 1111 ---LSKYFKIGKVDTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCK---EFGNMMSREF 1164
Query: 222 EVTGLWNATYHLEIQIFQKEDSLILHHDAYIKKLLHNFNLNKGRGRKIPLYPSYNILKDE 43
E++ + ++ L +QI Q +D + YIK LL F L + K P+ + ++ DE
Sbjct: 1165 EMSMIGELSFFLGVQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKSIKTPIATNGHLDLDE 1224
Query: 42 ENK-VDYEKFRSLI 4
K VD + +RS+I
Sbjct: 1225 GGKPVDLKLYRSMI 1238
>gb|AAM08718.1|AC116601_11 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1627
Score = 67.4 bits (163), Expect = 2e-09
Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 11/194 (5%)
Frame = -3
Query: 552 LDIKSAFLHGEISEEIYMK*PEGF--IQNPNKVCKLIKALYGLNRHLRPGMIS*RNIS*I 379
+D+KSAFL+GEI+E ++++ P GF +NPN V KL KALYGL + R R+
Sbjct: 1053 MDVKSAFLNGEIAELVFVEQPLGFEDPKNPNHVYKLSKALYGLKQAPRAWYERLRDFL-- 1110
Query: 378 KD*LSQEQTL-TCSTLQKTKPSYYNSFSC*LYF-------LNRG*CN*NV*VQNKLEEVF 223
LS+ + T TK + F C +Y N C N + F
Sbjct: 1111 ---LSKYFKIGKVDTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCK---EFGNMMSREF 1164
Query: 222 EVTGLWNATYHLEIQIFQKEDSLILHHDAYIKKLLHNFNLNKGRGRKIPLYPSYNILKDE 43
E++ + ++ L +QI Q +D + YIK LL F L + K P+ + ++ DE
Sbjct: 1165 EMSMIGELSFFLGVQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKSIKTPIATNGHLDLDE 1224
Query: 42 ENK-VDYEKFRSLI 4
K VD + +RS+I
Sbjct: 1225 GGKPVDLKLYRSMI 1238
>emb|CAN81839.1| hypothetical protein VITISV_033739 [Vitis vinifera]
Length = 1088
Score = 67.0 bits (162), Expect = 3e-09
Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 6/189 (3%)
Frame = -3
Query: 552 LDIKSAFLHGEISEEIYMK*PEGFIQ--NPNKVCKLIKALYGLNRHLRPGMIS*RNIS*I 379
LD+KSAFLHGEI EE +++ P G+ Q +KV +L KALYGL + R S I
Sbjct: 685 LDVKSAFLHGEIHEEXFVEQPPGYEQKGKESKVYRLKKALYGLKQAPR-AWYSRIESYFI 743
Query: 378 KD*LSQ---EQTLTCSTLQKTKPSYYNSFSC*LYFLNRG*CN*NV*VQNKLEEVFEVTGL 208
K+ ++ E TL T + K + L F ++ + E F++T L
Sbjct: 744 KEGFNKCPYEHTLFTKTAEGGKILIVCLYVDELIFTGNDESMFKQFKKSMMVE-FDMTDL 802
Query: 207 WNATYHLEIQIFQKEDSLILHHDAYIKKLLHNFNLNKGRGRKIPLYPSYNILKDEEN-KV 31
Y L I++ QK D + ++ Y +++L FNL + P+ P + + +D+E +V
Sbjct: 803 EKLRYFLGIEVMQKTDGIFINQRKYAQEVLERFNLYQCNPVHNPVVPGFKLTRDKEGVEV 862
Query: 30 DYEKFRSLI 4
D ++ ++
Sbjct: 863 DGTLYKQMV 871
>gb|ABA96551.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1487
Score = 66.2 bits (160), Expect = 5e-09
Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 10/194 (5%)
Frame = -3
Query: 552 LDIKSAFLHGEISEEIYMK*PEGFIQN--PNKVCKLIKALYGLNRHLRPGMIS*RNIS*I 379
+D+KSAFL+G I EE+Y+K P GF + PN V KL KALYGL + R +N
Sbjct: 1085 MDVKSAFLNGFIQEEVYVKQPPGFENSDFPNHVFKLSKALYGLKQAPRAWYDRLKNFLLT 1144
Query: 378 KD*LSQEQTLTCSTLQKTKPS-------YYNSFSC*LYFLNRG*CN*NV*VQNKLEEVFE 220
K + L+ Y F C + L V + FE
Sbjct: 1145 KGFTMGKVDKMLFVLKHGDNQLFVQIYVYDIIFGCSTHTL-------VVKFAETMRREFE 1197
Query: 219 VTGLWNATYHLEIQIFQKEDSLILHHDAYIKKLLHNFNLNKGRGRKIPLYPSYNILKDEE 40
+T + +Y L +QI Q +H Y+K LL F + + P+ + + DE+
Sbjct: 1198 MTMMGELSYFLGLQIKQTPQGTFVHQTKYMKDLLRRFKMENCKPISTPIGSTTVLDPDED 1257
Query: 39 NK-VDYEKFRSLIR 1
+ VD +++RS+IR
Sbjct: 1258 GEAVDQKEYRSMIR 1271
>gb|ABF95851.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1075
Score = 65.1 bits (157), Expect = 1e-08
Identities = 59/199 (29%), Positives = 96/199 (48%), Gaps = 16/199 (8%)
Frame = -3
Query: 552 LDIKSAFLHGEISEEIYMK*PEGFI--QNPNKVCKLIKALYGLNRHLRPGMIS*RNIS*I 379
+D+K+AFL+GE+ EEIYM+ P+GF+ +KVCKL K+LYGL + + +
Sbjct: 790 MDVKTAFLNGELEEEIYMQQPDGFVIPGQEDKVCKLEKSLYGLKQ------------APM 837
Query: 378 KD*LSQEQTLTCS--TLQKTKPSYYNSFS-------C*LY---FLNRG*CN*NV--*VQN 241
+ ++TL + T+ Y+ F C LY L G N N+ +++
Sbjct: 838 QWHEKFDKTLISAGFTVNDADKCVYSRFDGDIGVILC-LYVDDILILG-TNLNIISEIKS 895
Query: 240 KLEEVFEVTGLWNATYHLEIQIFQKEDSLILHHDAYIKKLLHNFNLNKGRGRKIPLYPSY 61
L F++ L A L I+I +K+ L+ Y++KLLH F + P P
Sbjct: 896 YLSNKFDMKDLGEAKVILNIKIQKKDKGFELNQSHYVEKLLHRFGHFNSKSTATPYDPCL 955
Query: 60 NILKDEENKVDYEKFRSLI 4
+ K++ +D KF +I
Sbjct: 956 KLHKNQGQGLDQVKFAQII 974
>gb|ABE88110.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
[Medicago truncatula]
Length = 1654
Score = 64.7 bits (156), Expect = 1e-08
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 22/205 (10%)
Frame = -3
Query: 552 LDIKSAFLHGEISEEIYMK*PEGF--IQNPNKVCKLIKALYGLNRHLRPGMIS*RNIS*I 379
+D+KSA L+G I EE+Y+K P GF +++P+ V KL K+LYGL + R N I
Sbjct: 1254 MDVKSALLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFL-I 1312
Query: 378 KD*LSQEQ---TLTCSTLQK----------------TKPSYYNSFSC*LYFLNRG*CN*N 256
K+ + Q TL TL+K T S FS
Sbjct: 1313 KNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFS-------------- 1358
Query: 255 V*VQNKLEEVFEVTGLWNATYHLEIQIFQKEDSLILHHDAYIKKLLHNFNLNKGRGRKIP 76
+++ FE++ + + L IQI Q ++ + +H Y K+LL F L + P
Sbjct: 1359 ----KLMQDEFEMSMMGELKFFLVIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMYTP 1414
Query: 75 LYPSYNILKDEENK-VDYEKFRSLI 4
++P+ + K++ VD + +R +I
Sbjct: 1415 MHPTCTLSKEDTGTVVDQKLYRGMI 1439
>gb|ABA97696.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1514
Score = 63.9 bits (154), Expect = 2e-08
Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 11/194 (5%)
Frame = -3
Query: 552 LDIKSAFLHGEISEEIYMK*PEGFIQN---PNKVCKLIKALYGLNRHLRPGMIS*RNIS* 382
+D+KSAFL+G I EE+Y+K P GF +N PN V KL KALYGL + R +N
Sbjct: 1112 MDVKSAFLNGFIQEEVYVKQPPGF-ENPYFPNHVFKLSKALYGLKQAPRAWYDRLKNFLL 1170
Query: 381 IKD*LSQEQTLTCSTLQKTKPSYYNS-------FSC*LYFLNRG*CN*NV*VQNKLEEVF 223
+K + T L+ + F C + L V + F
Sbjct: 1171 VKGFTMGKVDKTLFVLKHGDNQLFVHIYVDDIIFGCSTHAL-------VVDFAETMRREF 1223
Query: 222 EVTGLWNATYHLEIQIFQKEDSLILHHDAYIKKLLHNFNLNKGRGRKIPLYPSYNILKDE 43
E++ + +Y L +QI Q +H Y+K LL F + + P+ + + DE
Sbjct: 1224 EMSMMGELSYFLGLQIKQTPQGTFVHQTKYMKDLLRLFKMENCKPISTPIGSTAVLDPDE 1283
Query: 42 ENK-VDYEKFRSLI 4
+ + VD +++RS+I
Sbjct: 1284 DGEAVDQKEYRSMI 1297
>emb|CAD40455.2| OSJNBa0041M21.13 [Oryza sativa Japonica Group]
gi|38343997|emb|CAD40362.2| OSJNBa0093P23.8 [Oryza
sativa Japonica Group]
Length = 711
Score = 63.2 bits (152), Expect = 4e-08
Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 11/194 (5%)
Frame = -3
Query: 552 LDIKSAFLHGEISEEIYMK*PEGFIQN---PNKVCKLIKALYGLNRHLRPGMIS*RNIS* 382
+D+KSAFL+G I EEIY+K P GF +N PN V KL K LYGL + R +N
Sbjct: 427 MDVKSAFLNGFIQEEIYVKQPPGF-ENPDFPNHVFKLSKDLYGLKQAPRAWYDRLKNFLL 485
Query: 381 IKD*LSQEQTLTCSTLQKTKPSYYNS-------FSC*LYFLNRG*CN*NV*VQNKLEEVF 223
K + T L+ + F C + L V + F
Sbjct: 486 AKGFTMGKVDKTLFVLKHGDNQLFVQIYVDDIIFGCSTHAL-------VVEFAETMRREF 538
Query: 222 EVTGLWNATYHLEIQIFQKEDSLILHHDAYIKKLLHNFNLNKGRGRKIPLYPSYNILKDE 43
E++ + +Y+L +QI Q + +H Y K LL F + + P+ + + DE
Sbjct: 539 EMSMMVELSYYLGLQIKQTPQGIFVHQTKYTKDLLRRFKMENCKPISTPIGSTAVLDPDE 598
Query: 42 ENK-VDYEKFRSLI 4
+ + VD +++RS+I
Sbjct: 599 DGETVDQKEYRSMI 612
>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 63.2 bits (152), Expect = 4e-08
Identities = 56/193 (29%), Positives = 94/193 (48%), Gaps = 10/193 (5%)
Frame = -3
Query: 552 LDIKSAFLHGEISEEIYMK*PEGFIQ--NPNKVCKLIKALYGLNRHLRPGMIS*RNIS*I 379
+D+KSAFL+G ++EE+Y++ P+GF +P+ V +L KALYGL + R +
Sbjct: 1175 MDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAW------YERL 1228
Query: 378 KD*LSQEQTLTCSTLQKT---KPSYYNSFSC*LY---FLNRG*CN*NV-*VQNKLEEVFE 220
+ L+Q Q + KT K N +Y + G N + +++ FE
Sbjct: 1229 TEFLTQ-QGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFE 1287
Query: 219 VTGLWNATYHLEIQIFQKEDSLILHHDAYIKKLLHNFNLNKGRGRKIPLYPSYNILKDEE 40
++ + TY L +Q+ Q EDS+ L Y K ++ F + ++ P + KDE
Sbjct: 1288 MSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEA 1347
Query: 39 -NKVDYEKFRSLI 4
VD + +RS+I
Sbjct: 1348 GTSVDQKPYRSMI 1360
>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1499
Score = 62.8 bits (151), Expect = 5e-08
Identities = 58/192 (30%), Positives = 94/192 (48%), Gaps = 9/192 (4%)
Frame = -3
Query: 552 LDIKSAFLHGEISEEIYMK*PEGFIQ--NPNKVCKLIKALYGLNRHLRP--GMIS*RNIS 385
+D+KSAFL+G++ EE+Y++ P GFI+ KV KL KALYGL + R G I +
Sbjct: 948 MDVKSAFLNGDLEEEVYIEQPPGFIEEKEEGKVLKLHKALYGLKQAPRAWYGRI---DGY 1004
Query: 384 *IKD*LSQEQTLTCSTLQKTKPSYYNSFSC*LYFLNRG*CN*NV----*VQNKLEEVFEV 217
IK+ + ++KT LY + NV + +++ FE+
Sbjct: 1005 FIKNGFERSINDAAFYVKKTSKEI---LVVSLYVDDIIVTGSNVKEIERFKEEMKNEFEM 1061
Query: 216 TGLWNATYHLEIQIFQKEDSLILHHDAYIKKLLHNFNLNKGRGRKIPLYPSYNILKDEEN 37
T L +Y L +++ Q ++ + L + Y KKLL F + + + PL P I +
Sbjct: 1062 TDLGELSYFLGMEVNQDDEGIFLSQENYAKKLLKKFGMQECKSVSTPLTPHGKIEEVLSE 1121
Query: 36 KV-DYEKFRSLI 4
K+ D +RS+I
Sbjct: 1122 KLEDVTMYRSMI 1133
>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
Length = 1550
Score = 62.4 bits (150), Expect = 7e-08
Identities = 56/193 (29%), Positives = 93/193 (48%), Gaps = 10/193 (5%)
Frame = -3
Query: 552 LDIKSAFLHGEISEEIYMK*PEGFIQ--NPNKVCKLIKALYGLNRHLRPGMIS*RNIS*I 379
+D+KSAFL+G ++EE Y++ P+GF+ +P+ V +L KALYGL + R +
Sbjct: 1149 MDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAW------YERL 1202
Query: 378 KD*LSQEQTLTCSTLQKT---KPSYYNSFSC*LY---FLNRG*CN*NV-*VQNKLEEVFE 220
+ L+Q Q + KT K N +Y + G N + +++ FE
Sbjct: 1203 TEFLTQ-QGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFE 1261
Query: 219 VTGLWNATYHLEIQIFQKEDSLILHHDAYIKKLLHNFNLNKGRGRKIPLYPSYNILKDEE 40
++ + TY L +Q+ Q EDS+ L Y K ++ F + ++ P + KDE
Sbjct: 1262 MSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEA 1321
Query: 39 -NKVDYEKFRSLI 4
VD +RS+I
Sbjct: 1322 GTSVDQSLYRSMI 1334