BLASTX nr result
ID: Ephedra25_contig00027187
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra25_contig00027187 (424 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ADN88404.1| polyprotein [Strawberry latent ringspot virus] 144 2e-32 gb|ADN88402.1| polyprotein [Strawberry latent ringspot virus] 143 2e-32 ref|YP_227376.1| small coat protein [Strawberry latent ringspot ... 143 3e-32 ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot... 143 3e-32 gb|ADN88406.1| polyprotein [Strawberry latent ringspot virus] 143 3e-32 gb|ADN88405.1| polyprotein [Strawberry latent ringspot virus] 142 3e-32 gb|ADN88403.1| polyprotein [Strawberry latent ringspot virus] 142 3e-32 emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot v... 101 3e-21 >gb|ADN88404.1| polyprotein [Strawberry latent ringspot virus] Length = 712 Score = 144 bits (362), Expect = 2e-32 Identities = 66/120 (55%), Positives = 81/120 (67%) Frame = +3 Query: 6 ILPAPCFVDNRTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 185 IL PCFV+ TF ++P+ R+T L + TPP RW NTHFGATE Y RTC Sbjct: 593 ILDKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652 Query: 186 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 365 P WVLLQFP + + L VRDVSLWVEP+I +RH +GGFP+ P P+P+ YY+ENTF VG Sbjct: 653 PAWVLLQFPNEEASHLGVRDVSLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712 >gb|ADN88402.1| polyprotein [Strawberry latent ringspot virus] Length = 712 Score = 143 bits (361), Expect = 2e-32 Identities = 65/120 (54%), Positives = 81/120 (67%) Frame = +3 Query: 6 ILPAPCFVDNRTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 185 IL PCFV+ TF ++P+ R+T L + TPP RW NTHFGATE Y RTC Sbjct: 593 ILDKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652 Query: 186 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 365 P WVLLQFP + + L +RDVSLWVEP+I +RH +GGFP+ P P+P+ YY+ENTF VG Sbjct: 653 PAWVLLQFPNEEASHLGIRDVSLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712 >ref|YP_227376.1| small coat protein [Strawberry latent ringspot virus] Length = 235 Score = 143 bits (360), Expect = 3e-32 Identities = 63/120 (52%), Positives = 80/120 (66%) Frame = +3 Query: 6 ILPAPCFVDNRTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 185 I+ PCF++ TF ++P+ R+T L + TPP RW NTHFGATE Y RTC Sbjct: 116 IMGKPCFIEKDTFVQVMPMADPRETIYLPTTDSVASYVTPPRRWVNTHFGATEMYGVRTC 175 Query: 186 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 365 P WVLLQFP + + L VRD+SLWVEP + +RH +GGFP+ P P+PA YY+ENTF VG Sbjct: 176 PAWVLLQFPNEEASHLGVRDISLWVEPKVTFRHAVGGFPILKPTPAPAIDYYYENTFPVG 235 >ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot virus] gi|58040999|gb|AAW63129.1| 109 kDa polyprotein [Strawberry latent ringspot virus] Length = 989 Score = 143 bits (360), Expect = 3e-32 Identities = 63/120 (52%), Positives = 80/120 (66%) Frame = +3 Query: 6 ILPAPCFVDNRTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 185 I+ PCF++ TF ++P+ R+T L + TPP RW NTHFGATE Y RTC Sbjct: 870 IMGKPCFIEKDTFVQVMPMADPRETIYLPTTDSVASYVTPPRRWVNTHFGATEMYGVRTC 929 Query: 186 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 365 P WVLLQFP + + L VRD+SLWVEP + +RH +GGFP+ P P+PA YY+ENTF VG Sbjct: 930 PAWVLLQFPNEEASHLGVRDISLWVEPKVTFRHAVGGFPILKPTPAPAIDYYYENTFPVG 989 >gb|ADN88406.1| polyprotein [Strawberry latent ringspot virus] Length = 712 Score = 143 bits (360), Expect = 3e-32 Identities = 65/120 (54%), Positives = 81/120 (67%) Frame = +3 Query: 6 ILPAPCFVDNRTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 185 IL PCFV+ TF ++P+ R+T L + TPP RW NTHFGATE Y RTC Sbjct: 593 ILGKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652 Query: 186 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 365 P WVLLQFP + + L VRD+SLWVEP+I +RH +GGFP+ P P+P+ YY+ENTF VG Sbjct: 653 PAWVLLQFPNEEASHLGVRDISLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712 >gb|ADN88405.1| polyprotein [Strawberry latent ringspot virus] Length = 712 Score = 142 bits (359), Expect = 3e-32 Identities = 67/120 (55%), Positives = 79/120 (65%) Frame = +3 Query: 6 ILPAPCFVDNRTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 185 IL PCFV+ TF ++P+ +T L + TPP RW NTHFGATE Y RTC Sbjct: 593 ILGKPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRRWVNTHFGATESYGVRTC 652 Query: 186 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 365 P WVLLQFP + + L VRDVSLWVEP+I YRH +GGFP+ P P PA YY+ENTF VG Sbjct: 653 PAWVLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGFPILKPTPPPAIDYYYENTFPVG 712 >gb|ADN88403.1| polyprotein [Strawberry latent ringspot virus] Length = 712 Score = 142 bits (359), Expect = 3e-32 Identities = 67/120 (55%), Positives = 79/120 (65%) Frame = +3 Query: 6 ILPAPCFVDNRTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 185 IL PCFV+ TF ++P+ +T L + TPP RW NTHFGATE Y RTC Sbjct: 593 ILGKPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRRWVNTHFGATESYGVRTC 652 Query: 186 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 365 P WVLLQFP + + L VRDVSLWVEP+I YRH +GGFP+ P P PA YY+ENTF VG Sbjct: 653 PAWVLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGFPILKPTPPPAIDYYYENTFPVG 712 >emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot virus] Length = 890 Score = 101 bits (252), Expect(2) = 3e-21 Identities = 45/87 (51%), Positives = 56/87 (64%) Frame = +3 Query: 6 ILPAPCFVDNRTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 185 I+ PCF++ TF ++P+ R+T L + TPP RW NTHFGATE Y RTC Sbjct: 747 IMGKPCFIEKDTFVQVMPMADPRETIYLPTTDSIASYETPPRRWVNTHFGATETYGVRTC 806 Query: 186 PVWVLLQFPPKTMAQLHVRDVSLWVEP 266 P WVLLQFP + + L VRD+SLWVEP Sbjct: 807 PAWVLLQFPNEEASHLGVRDISLWVEP 833 Score = 25.8 bits (55), Expect(2) = 3e-21 Identities = 11/14 (78%), Positives = 11/14 (78%) Frame = +2 Query: 374 LLLGISPGEYPRPR 415 L LGIS GEYP PR Sbjct: 873 LFLGISQGEYPWPR 886