BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00027187
         (424 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADN88404.1| polyprotein [Strawberry latent ringspot virus]         144   2e-32
gb|ADN88402.1| polyprotein [Strawberry latent ringspot virus]         143   2e-32
ref|YP_227376.1| small coat protein [Strawberry latent ringspot ...   143   3e-32
ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot...   143   3e-32
gb|ADN88406.1| polyprotein [Strawberry latent ringspot virus]         143   3e-32
gb|ADN88405.1| polyprotein [Strawberry latent ringspot virus]         142   3e-32
gb|ADN88403.1| polyprotein [Strawberry latent ringspot virus]         142   3e-32
emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot v...   101   3e-21

>gb|ADN88404.1| polyprotein [Strawberry latent ringspot virus]
          Length = 712

 Score =  144 bits (362), Expect = 2e-32
 Identities = 66/120 (55%), Positives = 81/120 (67%)
 Frame = +3

Query: 6   ILPAPCFVDNRTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 185
           IL  PCFV+  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593 ILDKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 186 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 365
           P WVLLQFP +  + L VRDVSLWVEP+I +RH +GGFP+  P P+P+  YY+ENTF VG
Sbjct: 653 PAWVLLQFPNEEASHLGVRDVSLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>gb|ADN88402.1| polyprotein [Strawberry latent ringspot virus]
          Length = 712

 Score =  143 bits (361), Expect = 2e-32
 Identities = 65/120 (54%), Positives = 81/120 (67%)
 Frame = +3

Query: 6   ILPAPCFVDNRTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 185
           IL  PCFV+  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593 ILDKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 186 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 365
           P WVLLQFP +  + L +RDVSLWVEP+I +RH +GGFP+  P P+P+  YY+ENTF VG
Sbjct: 653 PAWVLLQFPNEEASHLGIRDVSLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>ref|YP_227376.1| small coat protein [Strawberry latent ringspot virus]
          Length = 235

 Score =  143 bits (360), Expect = 3e-32
 Identities = 63/120 (52%), Positives = 80/120 (66%)
 Frame = +3

Query: 6   ILPAPCFVDNRTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 185
           I+  PCF++  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 116 IMGKPCFIEKDTFVQVMPMADPRETIYLPTTDSVASYVTPPRRWVNTHFGATEMYGVRTC 175

Query: 186 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 365
           P WVLLQFP +  + L VRD+SLWVEP + +RH +GGFP+  P P+PA  YY+ENTF VG
Sbjct: 176 PAWVLLQFPNEEASHLGVRDISLWVEPKVTFRHAVGGFPILKPTPAPAIDYYYENTFPVG 235


>ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot virus]
            gi|58040999|gb|AAW63129.1| 109 kDa polyprotein
            [Strawberry latent ringspot virus]
          Length = 989

 Score =  143 bits (360), Expect = 3e-32
 Identities = 63/120 (52%), Positives = 80/120 (66%)
 Frame = +3

Query: 6    ILPAPCFVDNRTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 185
            I+  PCF++  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 870  IMGKPCFIEKDTFVQVMPMADPRETIYLPTTDSVASYVTPPRRWVNTHFGATEMYGVRTC 929

Query: 186  PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 365
            P WVLLQFP +  + L VRD+SLWVEP + +RH +GGFP+  P P+PA  YY+ENTF VG
Sbjct: 930  PAWVLLQFPNEEASHLGVRDISLWVEPKVTFRHAVGGFPILKPTPAPAIDYYYENTFPVG 989


>gb|ADN88406.1| polyprotein [Strawberry latent ringspot virus]
          Length = 712

 Score =  143 bits (360), Expect = 3e-32
 Identities = 65/120 (54%), Positives = 81/120 (67%)
 Frame = +3

Query: 6   ILPAPCFVDNRTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 185
           IL  PCFV+  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593 ILGKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 186 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 365
           P WVLLQFP +  + L VRD+SLWVEP+I +RH +GGFP+  P P+P+  YY+ENTF VG
Sbjct: 653 PAWVLLQFPNEEASHLGVRDISLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>gb|ADN88405.1| polyprotein [Strawberry latent ringspot virus]
          Length = 712

 Score =  142 bits (359), Expect = 3e-32
 Identities = 67/120 (55%), Positives = 79/120 (65%)
 Frame = +3

Query: 6   ILPAPCFVDNRTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 185
           IL  PCFV+  TF  ++P+    +T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593 ILGKPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 186 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 365
           P WVLLQFP +  + L VRDVSLWVEP+I YRH +GGFP+  P P PA  YY+ENTF VG
Sbjct: 653 PAWVLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGFPILKPTPPPAIDYYYENTFPVG 712


>gb|ADN88403.1| polyprotein [Strawberry latent ringspot virus]
          Length = 712

 Score =  142 bits (359), Expect = 3e-32
 Identities = 67/120 (55%), Positives = 79/120 (65%)
 Frame = +3

Query: 6   ILPAPCFVDNRTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 185
           IL  PCFV+  TF  ++P+    +T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593 ILGKPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 186 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 365
           P WVLLQFP +  + L VRDVSLWVEP+I YRH +GGFP+  P P PA  YY+ENTF VG
Sbjct: 653 PAWVLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGFPILKPTPPPAIDYYYENTFPVG 712


>emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot virus]
          Length = 890

 Score =  101 bits (252), Expect(2) = 3e-21
 Identities = 45/87 (51%), Positives = 56/87 (64%)
 Frame = +3

Query: 6    ILPAPCFVDNRTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 185
            I+  PCF++  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 747  IMGKPCFIEKDTFVQVMPMADPRETIYLPTTDSIASYETPPRRWVNTHFGATETYGVRTC 806

Query: 186  PVWVLLQFPPKTMAQLHVRDVSLWVEP 266
            P WVLLQFP +  + L VRD+SLWVEP
Sbjct: 807  PAWVLLQFPNEEASHLGVRDISLWVEP 833



 Score = 25.8 bits (55), Expect(2) = 3e-21
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +2

Query: 374 LLLGISPGEYPRPR 415
           L LGIS GEYP PR
Sbjct: 873 LFLGISQGEYPWPR 886