BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00026905
         (501 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21038.3| unnamed protein product [Vitis vinifera]              110   2e-22
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   110   2e-22
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...   107   2e-21
gb|EPS62146.1| hypothetical protein M569_12646, partial [Genlise...   105   6e-21
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   105   6e-21
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...   105   6e-21
gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus pe...   105   8e-21
ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   103   3e-20
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   103   3e-20
ref|XP_006404133.1| hypothetical protein EUTSA_v10010107mg [Eutr...   102   4e-20
dbj|BAJ34538.1| unnamed protein product [Thellungiella halophila]     102   4e-20
ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago trunc...   102   7e-20
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...   102   7e-20
ref|XP_006842072.1| hypothetical protein AMTR_s00078p00055040 [A...   101   9e-20
gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]       101   9e-20
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]       101   1e-19
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   100   2e-19
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   100   3e-19
ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis...   100   3e-19
ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis ...    99   4e-19

>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
          Length = 1035

 Score =  110 bits (275), Expect = 2e-22
 Identities = 66/179 (36%), Positives = 99/179 (55%), Gaps = 13/179 (7%)
 Frame = +2

Query: 2   EDPWIRTVDFTDKNAFGRCFCYRILVSTKIGHAVEDCKKYLK--RDSLFDDENEFPGLTL 175
           +DPWIRT DFT   A GRC  YRI +  + G  ++    YL+  R ++ +D    P   L
Sbjct: 87  DDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDS---PKWQL 143

Query: 176 NVRPEG----PVLRCWWCFTVPRQESIPFKTLFLLNGLLHKGILNYHSLNEEFYELCSS- 340
            VR E     P+   ++C  +  +E I F+ +FL+N ++HKGI+N H L+++F++L  S 
Sbjct: 144 RVRDEPDFGLPMSDPFFC--IQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQ 201

Query: 341 --ELGAMALRHMHIYNHQVYDAVGEFKQV----LKGHKFLNDPTLTSDTMEIYRLVVTP 499
             ++   AL+H+  Y H V+DA    K V    LK  K L  P    D +E+ RLV+TP
Sbjct: 202 QKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITP 260


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  110 bits (275), Expect = 2e-22
 Identities = 66/179 (36%), Positives = 99/179 (55%), Gaps = 13/179 (7%)
 Frame = +2

Query: 2   EDPWIRTVDFTDKNAFGRCFCYRILVSTKIGHAVEDCKKYLK--RDSLFDDENEFPGLTL 175
           +DPWIRT DFT   A GRC  YRI +  + G  ++    YL+  R ++ +D    P   L
Sbjct: 249 DDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDS---PKWQL 305

Query: 176 NVRPEG----PVLRCWWCFTVPRQESIPFKTLFLLNGLLHKGILNYHSLNEEFYELCSS- 340
            VR E     P+   ++C  +  +E I F+ +FL+N ++HKGI+N H L+++F++L  S 
Sbjct: 306 RVRDEPDFGLPMSDPFFC--IQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQ 363

Query: 341 --ELGAMALRHMHIYNHQVYDAVGEFKQV----LKGHKFLNDPTLTSDTMEIYRLVVTP 499
             ++   AL+H+  Y H V+DA    K V    LK  K L  P    D +E+ RLV+TP
Sbjct: 364 QKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITP 422


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
           gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
           protein [Populus trichocarpa]
          Length = 1200

 Score =  107 bits (266), Expect = 2e-21
 Identities = 61/175 (34%), Positives = 91/175 (52%), Gaps = 9/175 (5%)
 Frame = +2

Query: 2   EDPWIRTVDFTDKNAFGRCFCYRILVSTKIGHAVEDCKKYLK--RDSLFDDENEFPGLTL 175
           +DPWIRT DFT   A GRC  YR+ +  + G  +    KYLK  R  +  +EN    + +
Sbjct: 249 DDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEENHRRRIRI 308

Query: 176 NVRPEGPVLRCWWCFTVPRQESIPFKTLFLLNGLLHKGILNYHSLNEEFYELC---SSEL 346
              P+  +      F +  +E I F+ LFL+N ++HKGI N H L+ +F++L     +E+
Sbjct: 309 LDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHTEV 368

Query: 347 GAMALRHMHIYNHQVYDAVGEFKQV----LKGHKFLNDPTLTSDTMEIYRLVVTP 499
              AL+H+  Y   V++A    K V    LK      +P    D +EI RLV+TP
Sbjct: 369 NVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVITP 423


>gb|EPS62146.1| hypothetical protein M569_12646, partial [Genlisea aurea]
          Length = 1195

 Score =  105 bits (262), Expect = 6e-21
 Identities = 69/177 (38%), Positives = 89/177 (50%), Gaps = 11/177 (6%)
 Frame = +2

Query: 2   EDPWIRTVDFTDKNAFGRCFCYRILVSTKIGHAVEDCKKYLK--RDSLFDDENEFPGLTL 175
           +DPWIRT DFT   A GRC  YRI V    G  +     YL+  R  +FD   EF G  +
Sbjct: 242 DDPWIRTTDFTSTGAIGRCNTYRISVRPLSGPQLLKALDYLRLRRVKVFD---EFKGKHI 298

Query: 176 NV--RPEGPVLRCWWCFTVPRQESIPFKTLFLLNGLLHKGILNYHSLNEEFYELCSS--- 340
            V   P    L     F +   + + FK  FL+N +LH GI+NYH + EEF++L  +   
Sbjct: 299 RVMDEPGFGTLMSDPFFCIQNVKGLSFKITFLVNAVLHSGIINYHQMTEEFFDLLRTQPE 358

Query: 341 ELGAMALRHMHIYNHQVYDAVGEFKQVLK----GHKFLNDPTLTSDTMEIYRLVVTP 499
           EL   AL H+      VYDAV   K V K      K L  P    DT+E+ RL++TP
Sbjct: 359 ELIVPALTHLSFSKRPVYDAVKALKAVQKWLLGNPKLLERPMRNEDTVEVRRLIITP 415


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca
           subsp. vesca]
          Length = 1197

 Score =  105 bits (262), Expect = 6e-21
 Identities = 66/180 (36%), Positives = 94/180 (52%), Gaps = 14/180 (7%)
 Frame = +2

Query: 2   EDPWIRTVDFTDKNAFGRCFCYRILVSTKIGHAVEDCKKYLKR---DSLFDDE----NEF 160
           +DPWIRT DFT   A GRC  YR+L+  + G  ++    YLK      LF  +     + 
Sbjct: 249 DDPWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQELFIKKPPRIQDE 308

Query: 161 PGLTLNVRPEGPVLRCWWCFTVPRQESIPFKTLFLLNGLLHKGILNYHSLNEEFYELCSS 340
           PG      P    L     F++  Q++I F  LFL+N ++HKGILN H L+E F++L  +
Sbjct: 309 PGFG---NPMSDAL-----FSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLLRN 360

Query: 341 ---ELGAMALRHMHIYNHQVYDAVGEFKQV----LKGHKFLNDPTLTSDTMEIYRLVVTP 499
              E+   AL+H+  Y H V+DA    K V    L+  K + +P    D  E+ RLV+TP
Sbjct: 361 QPEEINVAALKHLCSYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVITP 420


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
           gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
           6 [Gossypium hirsutum]
          Length = 1196

 Score =  105 bits (262), Expect = 6e-21
 Identities = 66/174 (37%), Positives = 90/174 (51%), Gaps = 8/174 (4%)
 Frame = +2

Query: 2   EDPWIRTVDFTDKNAFGRCFCYRILVSTKIGHAVEDCKKYLKRDSLFDDENEFPGLTLNV 181
           +D WIRT DFT   A GRC  YR+LV  + G  ++    YL+   +  ++       L +
Sbjct: 249 DDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDLRSQ---LRI 305

Query: 182 RPEGPVLRCWWC-FTVPRQESIPFKTLFLLNGLLHKGILNYHSLNEEFYELC---SSELG 349
           R E    R     F    +E IPF+ +FL+N +LHKGI N H L+ +F+ L    S E+ 
Sbjct: 306 RDEPDFGRSMSDHFYYIYKEGIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLRNQSMEVN 365

Query: 350 AMALRHMHIYNHQVYDAVGEFKQV----LKGHKFLNDPTLTSDTMEIYRLVVTP 499
             AL+H++ Y H VYDA    K V    LK  K    P    D +EI RLV+TP
Sbjct: 366 VAALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVITP 419


>gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score =  105 bits (261), Expect = 8e-21
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
 Frame = +2

Query: 2   EDPWIRTVDFTDKNAFGRCFCYRILVSTKIGHAVEDCKKYLKRDSLFDDENEFPGLTLNV 181
           +DPWIRT DFT   A GRC  YR+L+  + G  ++    YL+   + +   ++P   +  
Sbjct: 248 DDPWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKWPP-KIQD 306

Query: 182 RPEGPVLRCWWCFTVPRQESIPFKTLFLLNGLLHKGILNYHSLNEEFYELCSS---ELGA 352
            P+  +      F++  +E I F+ +FL+N ++HKG +N H L++ F+ L  S   E+  
Sbjct: 307 EPDFGMSNTEPFFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLRSQPKEINV 366

Query: 353 MALRHMHIYNHQVYDAVGEFKQV----LKGHKFLNDPTLTSDTMEIYRLVVTP 499
            AL+H+  Y   V+DA    K V    LK  K + DP    D  E+ RLV+TP
Sbjct: 367 AALKHLCSYRSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVITP 419


>ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Citrus
           sinensis]
          Length = 1025

 Score =  103 bits (256), Expect = 3e-20
 Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 7/173 (4%)
 Frame = +2

Query: 2   EDPWIRTVDFTDKNAFGRCFCYRILVSTKIGHAVEDCKKYLKRDSLFDDENEFPGLTLNV 181
           +DPWIRT DFT   A GRC  YRI +S++    +     YL    +  D    P +T+  
Sbjct: 249 DDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRP-ITIRE 307

Query: 182 RPEGPVLRCWWCFTVPRQESIPFKTLFLLNGLLHKGILNYHSLNEEFYELC---SSELGA 352
            P+  V      F +  +E I F+ +FL+N ++HKGI+N H L++ F++L    S E+  
Sbjct: 308 EPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNV 367

Query: 353 MALRHMHIYNHQVYDAVGEFKQV----LKGHKFLNDPTLTSDTMEIYRLVVTP 499
            AL+H++ Y   V+DA    K V    LK  +    P    D +E+ RLV+TP
Sbjct: 368 AALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITP 420


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
           sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
           RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
           sinensis]
          Length = 1197

 Score =  103 bits (256), Expect = 3e-20
 Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 7/173 (4%)
 Frame = +2

Query: 2   EDPWIRTVDFTDKNAFGRCFCYRILVSTKIGHAVEDCKKYLKRDSLFDDENEFPGLTLNV 181
           +DPWIRT DFT   A GRC  YRI +S++    +     YL    +  D    P +T+  
Sbjct: 249 DDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRP-ITIRE 307

Query: 182 RPEGPVLRCWWCFTVPRQESIPFKTLFLLNGLLHKGILNYHSLNEEFYELC---SSELGA 352
            P+  V      F +  +E I F+ +FL+N ++HKGI+N H L++ F++L    S E+  
Sbjct: 308 EPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNV 367

Query: 353 MALRHMHIYNHQVYDAVGEFKQV----LKGHKFLNDPTLTSDTMEIYRLVVTP 499
            AL+H++ Y   V+DA    K V    LK  +    P    D +E+ RLV+TP
Sbjct: 368 AALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVITP 420


>ref|XP_006404133.1| hypothetical protein EUTSA_v10010107mg [Eutrema salsugineum]
           gi|557105252|gb|ESQ45586.1| hypothetical protein
           EUTSA_v10010107mg [Eutrema salsugineum]
          Length = 927

 Score =  102 bits (255), Expect = 4e-20
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
 Frame = +2

Query: 2   EDPWIRTVDFTDKNAFGRCFCYRILVSTKIGHAVEDCKKYLKRDSLFDDENEFPGLTLNV 181
           +DPWIRT DFT   A GRC  YR+L+S +  + +     YL+R  + ++   +P    + 
Sbjct: 263 DDPWIRTTDFTQAGAIGRCLSYRVLLSPRYENKLISALDYLRRQRVKEERVRWPPRIRDE 322

Query: 182 RPEGPVLRCWWCFTVPRQESIPFKTLFLLNGLLHKGILNYHSLNEEFYELCSS---ELGA 352
              G  +   + F +  +E I F+ +FL+N +LH+G+LN   L E F++L  +   ++  
Sbjct: 323 PGFGEAVSDHF-FCIHHKEGISFEIMFLVNSVLHRGVLNQFQLTERFFDLLRNQPKDVNI 381

Query: 353 MALRHMHIYNHQVYDAVGEFK----QVLKGHKFLNDPTLTSDTMEIYRLVVTP 499
            +L+H+  YN  V+DA    K     VLK  K L     + D  EI RLV+TP
Sbjct: 382 ASLKHLCTYNRPVFDAYKRLKLVQEWVLKNPKLLVSHERSDDISEIRRLVITP 434


>dbj|BAJ34538.1| unnamed protein product [Thellungiella halophila]
          Length = 998

 Score =  102 bits (255), Expect = 4e-20
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 7/173 (4%)
 Frame = +2

Query: 2   EDPWIRTVDFTDKNAFGRCFCYRILVSTKIGHAVEDCKKYLKRDSLFDDENEFPGLTLNV 181
           +DPWIRT DFT   A GRC  YR+L+S +  + +     YL+R  + ++   +P    + 
Sbjct: 247 DDPWIRTTDFTQAGAIGRCLSYRVLLSPRYENKLISALDYLRRQRVKEERVRWPPRIRDE 306

Query: 182 RPEGPVLRCWWCFTVPRQESIPFKTLFLLNGLLHKGILNYHSLNEEFYELCSS---ELGA 352
              G  +   + F +  +E I F+ +FL+N +LH+G+LN   L E F++L  +   ++  
Sbjct: 307 PGFGEAVSDHF-FCIHHKEGISFEIMFLVNSVLHRGVLNQFQLTERFFDLLRNQPKDVNI 365

Query: 353 MALRHMHIYNHQVYDAVGEFK----QVLKGHKFLNDPTLTSDTMEIYRLVVTP 499
            +L+H+  YN  V+DA    K     VLK  K L     + D  EI RLV+TP
Sbjct: 366 ASLKHLCTYNRPVFDAYKRLKLVQEWVLKNPKLLVSHERSDDISEIRRLVITP 418


>ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago truncatula]
           gi|355492457|gb|AES73660.1| Rna-dependent RNA polymerase
           [Medicago truncatula]
          Length = 1188

 Score =  102 bits (253), Expect = 7e-20
 Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 7/173 (4%)
 Frame = +2

Query: 2   EDPWIRTVDFTDKNAFGRCFCYRILVSTKIGHAVEDCKKYLKRDSLFDDENEFPGLTLNV 181
           +DPWIRT DFT   A GRC  YRI +  + G  +    +YL+R  +     + P    N 
Sbjct: 236 DDPWIRTTDFTPSGAIGRCNYYRISIPPRHGAKLNKALEYLRRQRVPRIPLKRPPKIQN- 294

Query: 182 RPEGPVLRCWWCFTVPRQESIPFKTLFLLNGLLHKGILNYHSLNEEFYELCSS---ELGA 352
            P+  V      F +  Q+ I F  +FL+N ++H+GI N +SL+ +F+EL  +   ++  
Sbjct: 295 EPDFGVPMSDAFFYIDSQKDISFDIMFLINAIVHRGIFNQYSLSNKFFELLKNQPKDVNV 354

Query: 353 MALRHMHIYNHQVYDAVGEF----KQVLKGHKFLNDPTLTSDTMEIYRLVVTP 499
            AL+H+  Y H V+DA        K +L+  KF      + D ME+ RLVVTP
Sbjct: 355 AALKHICTYKHPVFDAAKRLEAVQKWLLRNPKFYQISKQSDDVMEVRRLVVTP 407


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
           gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
           protein [Populus trichocarpa]
          Length = 1198

 Score =  102 bits (253), Expect = 7e-20
 Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 11/177 (6%)
 Frame = +2

Query: 2   EDPWIRTVDFTDKNAFGRCFCYRILVSTKIGHAVEDCKKYLKRDSLFDDENEFPGLTLNV 181
           +DPWIRT DFT   A GRC  YR+ +  + G  +     +LK   +   + E+    + +
Sbjct: 249 DDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRV---QEEYLRRPIRI 305

Query: 182 RPEG----PVLRCWWCFTVPRQESIPFKTLFLLNGLLHKGILNYHSLNEEFYELC---SS 340
           R E     P+   ++C  +  +E I F  LFL+N ++HKGI N H L+ +F++L     +
Sbjct: 306 RDEPDFGMPMTDPFFC--IHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPT 363

Query: 341 ELGAMALRHMHIYNHQVYDAVGEFK----QVLKGHKFLNDPTLTSDTMEIYRLVVTP 499
           E+   AL+H++ Y   V+DA  + K     +LK  KF  +     D  EI RLV+TP
Sbjct: 364 EVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITP 420


>ref|XP_006842072.1| hypothetical protein AMTR_s00078p00055040 [Amborella trichopoda]
           gi|548844121|gb|ERN03747.1| hypothetical protein
           AMTR_s00078p00055040 [Amborella trichopoda]
          Length = 1207

 Score =  101 bits (252), Expect = 9e-20
 Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 15/181 (8%)
 Frame = +2

Query: 2   EDPWIRTVDFTDKNAFGRCFCYRILVSTKIGHAVEDCKKYLKRDSLFD--------DENE 157
           EDPWIRT DFT   A GRC CY+I  S + G  +E  + Y +   + +           +
Sbjct: 250 EDPWIRTTDFTGNGAVGRCRCYKISFSPRYGLKMEKARDYFRECRILEHGVLQKVLGPQD 309

Query: 158 FPGLTLNVRPEGPVLRCWWCFTVPRQESIPFKTLFLLNGLLHKGILNYHSLNEEFYELC- 334
           +P   ++  P          F+V  QE + F+ ++L+  L+HKGI+N H L +EF++L  
Sbjct: 310 YPP-KVSTEPGFMKPMRNHFFSVNIQEGLSFEVVYLVTCLVHKGIINQHRLCKEFFDLLR 368

Query: 335 --SSELGAMALRHMHIYNHQVYDAVGEFKQV----LKGHKFLNDPTLTSDTMEIYRLVVT 496
             S E+   ALRHM+  +  V+DA  E K V    LK  + + +  +  D++E+ RL++T
Sbjct: 369 SQSPEVNTAALRHMYSCHRPVFDAYKELKTVQEWLLKNPRLVKETHIPEDSVEVRRLMIT 428

Query: 497 P 499
           P
Sbjct: 429 P 429


>gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
          Length = 1197

 Score =  101 bits (252), Expect = 9e-20
 Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 7/173 (4%)
 Frame = +2

Query: 2   EDPWIRTVDFTDKNAFGRCFCYRILVSTKIGHAVEDCKKYLKRDSLFDDENEFPGLTLNV 181
           +D WIRT DFT   A GRC  YR+++  + G  ++    YL+   +  D   +P L ++ 
Sbjct: 249 DDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYVRWP-LRISD 307

Query: 182 RPEGPVLRCWWCFTVPRQESIPFKTLFLLNGLLHKGILNYHSLNEEFYELCSS---ELGA 352
            P+         + +  +E IPF+ +FL+N ++HKGI N H L+E+F+ L      E+  
Sbjct: 308 EPDFGRSMSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLLRDQPREVNV 367

Query: 353 MALRHMHIYNHQVYDAVGEFKQV----LKGHKFLNDPTLTSDTMEIYRLVVTP 499
            AL+H++ Y   V+DA    K V    L+       P    D +EI RLV+TP
Sbjct: 368 AALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVITP 420


>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
          Length = 1194

 Score =  101 bits (251), Expect = 1e-19
 Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 7/173 (4%)
 Frame = +2

Query: 2   EDPWIRTVDFTDKNAFGRCFCYRILVSTKIGHAVEDCKKYLKRDSLFDDENEFPGLTLNV 181
           +DPWIRT DFT   A GRC  YR+ +  + G  ++    YL R+    +      L +  
Sbjct: 245 DDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGSKLKKAMSYL-RERRVQETPLRKALRIQS 303

Query: 182 RPEGPVLRCWWCFTVPRQESIPFKTLFLLNGLLHKGILNYHSLNEEFYELCSS---ELGA 352
            P+  V      F V  +  IPF+ +FLLN ++HKGI N H++++  ++L  +   E+  
Sbjct: 304 EPDFAVPMSDPIFYVHGKHGIPFEIMFLLNVIVHKGIFNQHNISDGLFDLFRNQPREINL 363

Query: 353 MALRHMHIYNHQVYDAVGEFKQV----LKGHKFLNDPTLTSDTMEIYRLVVTP 499
            AL+H+  Y   V+DA  + K V    L+  K L  P    D  E+ RLV+TP
Sbjct: 364 AALKHISSYKRPVFDAYAKLKNVQEWLLRNPKLLKIPRQLDDIAEVRRLVITP 416


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
           gi|223545464|gb|EEF46969.1| RNA-dependent RNA
           polymerase, putative [Ricinus communis]
          Length = 1203

 Score =  100 bits (250), Expect = 2e-19
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 7/173 (4%)
 Frame = +2

Query: 2   EDPWIRTVDFTDKNAFGRCFCYRILVSTKIGHAVEDCKKYLKRDSLFDDENEFPGLTLNV 181
           +DPWIRT DFT   A GRC  YR+ +  + G  ++    +L+   + +D    P L +  
Sbjct: 249 DDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLRRP-LHVTA 307

Query: 182 RPEGPVLRCWWCFTVPRQESIPFKTLFLLNGLLHKGILNYHSLNEEFYELCSS---ELGA 352
            PE  +      F +  +E + F  +FL+N ++HKGI N H L++ F++L  +   ++  
Sbjct: 308 EPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQPLDVNI 367

Query: 353 MALRHMHIYNHQVYDAVGEFKQV----LKGHKFLNDPTLTSDTMEIYRLVVTP 499
            ALRH+  Y H V+DA    K V    LK  K         D +EI RL +TP
Sbjct: 368 AALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITP 420


>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
          Length = 1197

 Score = 99.8 bits (247), Expect = 3e-19
 Identities = 61/175 (34%), Positives = 91/175 (52%), Gaps = 9/175 (5%)
 Frame = +2

Query: 2   EDPWIRTVDFTDKNAFGRCFCYRILVSTKIGHAVEDCKKYLKRDSLFDDENEFPGLTLNV 181
           +DPWIRT DFT   A GRC  +R+ V  + G  + +   YLK   +       P   LN 
Sbjct: 248 DDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNRPPKILN- 306

Query: 182 RPEGPVLRCWWCFTVPRQESIPFKTLFLLNGLLHKGILNYHSLNEEFYELC---SSELGA 352
            P+  V      F +  ++ I F+ LFL+N ++HKGI+N H +++ F++L     +E+  
Sbjct: 307 EPDYGVQMTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPNEVNL 366

Query: 353 MALRHMHIYNHQVYDAVGEFKQVLKGHKFLNDPTLTS------DTMEIYRLVVTP 499
            AL H+H +   V DA  + K V +    L +PTL        D +EI RLV+TP
Sbjct: 367 AALSHIHAFRRPVLDACKKLKLVQEW--LLKNPTLLKRSKELVDIVEIRRLVITP 419


>ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus]
           gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
           6 [Cucumis sativus]
          Length = 1197

 Score = 99.8 bits (247), Expect = 3e-19
 Identities = 61/175 (34%), Positives = 91/175 (52%), Gaps = 9/175 (5%)
 Frame = +2

Query: 2   EDPWIRTVDFTDKNAFGRCFCYRILVSTKIGHAVEDCKKYLKRDSLFDDENEFPGLTLNV 181
           +DPWIRT DFT   A GRC  +R+ V  + G  + +   YLK   +       P   LN 
Sbjct: 248 DDPWIRTTDFTISGAIGRCNTFRVSVPPRYGIKLNNAMNYLKEQRVHQVSLNRPPKILN- 306

Query: 182 RPEGPVLRCWWCFTVPRQESIPFKTLFLLNGLLHKGILNYHSLNEEFYELC---SSELGA 352
            P+  V      F +  ++ I F+ LFL+N ++HKGI+N H +++ F++L     +E+  
Sbjct: 307 EPDYGVQMTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPNEVNL 366

Query: 353 MALRHMHIYNHQVYDAVGEFKQVLKGHKFLNDPTLTS------DTMEIYRLVVTP 499
            AL H+H +   V DA  + K V +    L +PTL        D +EI RLV+TP
Sbjct: 367 AALSHIHAFRRPVLDACKKLKLVQEW--LLKNPTLLKRSKELVDIVEIRRLVITP 419


>ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
           gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase
           6 [Arabidopsis lyrata subsp. lyrata]
          Length = 1197

 Score = 99.4 bits (246), Expect = 4e-19
 Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 8/174 (4%)
 Frame = +2

Query: 2   EDPWIRTVDFTDKNAFGRCFCYRILVSTKIGHAVEDCKKYLKRDSLFDDENEFPGLTLNV 181
           +DPWIRT DFT   A GRC  YR+L+S +    +    +YL+   + ++   +P    N 
Sbjct: 247 DDPWIRTTDFTQVGAIGRCHSYRVLISPRYEKKLTTALEYLRMRRVQEERVRWPPRIRNE 306

Query: 182 RPEG-PVLRCWWCFTVPRQESIPFKTLFLLNGLLHKGILNYHSLNEEFYELCSS---ELG 349
              G PV   ++C  +  +E I F+ +FL+N +LH+G+ N   L E F++L  +   ++ 
Sbjct: 307 PCFGEPVSDHFFC--IHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDVN 364

Query: 350 AMALRHMHIYNHQVYDAVGEFKQV----LKGHKFLNDPTLTSDTMEIYRLVVTP 499
             +L+H+  Y   V+DA    K V    LK  K L     + D  EI RLV+TP
Sbjct: 365 IASLKHLCTYKRPVFDAYKRLKLVQEWILKNPKLLGGHEQSEDISEIRRLVITP 418