BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00026842
         (530 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]    68   1e-09
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]    64   2e-08
pir||B84500 probable retroelement pol polyprotein [imported] - A...    63   5e-08
gb|EXB35423.1| Retrovirus-related Pol polyprotein from transposo...    62   8e-08
ref|XP_002064813.1| GK15001 [Drosophila willistoni] gi|194160898...    60   2e-07
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]    60   4e-07
gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo s...    57   3e-06
emb|CAN62421.1| hypothetical protein VITISV_020606 [Vitis vinifera]    56   6e-06
emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana] ...    56   6e-06
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]          55   1e-05

>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
          Length = 1285

 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 23/184 (12%)
 Frame = -1

Query: 485 KLEILGICNISLTFGDNKI-SLNNTYFLKGLRRNLISLYRLITNNYQLIAYQDAQRKICC 309
           ++ +L + NI+L F +N+I SL N  ++  +RRNLIS+  L  N Y +   +     +  
Sbjct: 298 EVAVLAVGNIALNFKNNRILSLKNVLYVPSIRRNLISVSSLSKNGYSVCFNEFYDDSVVI 357

Query: 308 RIT*NNKIITEGYEHNDLFAMKPVTTEIFLTEEEDNK-------------------LWHR 186
           +     +II  G   + L+ +K VT E+ LT  E N                    LWH 
Sbjct: 358 KF--REQIICSGSLIDGLYILK-VTPELQLTNSEVNNFDIVAPLKRKCPIELSYTYLWHL 414

Query: 185 RSGHIKNIYFHKVNKATFDGPTINKKSL---NCEDFILAKMHKLSFKLKIKNLTNILEIV 15
           R GHI      +++    DGP  + K      CE  +  KM    F LK     ++LE++
Sbjct: 415 RLGHIN---LDRISLLVKDGPLSSLKVEALPTCESCLEGKMTNRPFPLKGNRANDVLELI 471

Query: 14  HSDI 3
           HSD+
Sbjct: 472 HSDL 475


>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
          Length = 1544

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 23/184 (12%)
 Frame = -1

Query: 485  KLEILGICNISLTFGDNK-ISLNNTYFLKGLRRNLISLYRLITNNYQLIAYQDAQRKICC 309
            ++ +L + NI+L F +N+ + L N  ++  +RRNLI +  L  N Y +   +     +  
Sbjct: 650  EVAVLAVGNIALNFKNNRTLFLKNVLYVPSIRRNLIPISSLSKNGYSVCFNEFYDDSVVI 709

Query: 308  RIT*NNKIITEGYEHNDLFAMKPVTTEIFLTEEEDNK-------------------LWHR 186
            +     ++I  G   + L+ +K VT E+ LT  E N                    LWH 
Sbjct: 710  KF--REQMICSGSLIDSLYILK-VTPELQLTNSEVNNFDIVAPLKRKRPIELSYTYLWHL 766

Query: 185  RSGHIKNIYFHKVNKATFDGPTINKKSL---NCEDFILAKMHKLSFKLKIKNLTNILEIV 15
            R GHI      +++    DGP  + K      CE  +  KM K  F LK     ++LE++
Sbjct: 767  RLGHIN---LDRISLLVKDGPLSSLKVEALPTCESCLEGKMTKRPFPLKGNRANDVLELI 823

Query: 14   HSDI 3
            HSD+
Sbjct: 824  HSDL 827


>pir||B84500 probable retroelement pol polyprotein [imported] - Arabidopsis
           thaliana
          Length = 616

 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 11/187 (5%)
 Frame = -1

Query: 530 KYFNNLQY-----VKTAGEEKLEILGICNISLTFGDNKISLNNTYFLKGLRRNLISLYRL 366
           +YF+ L       +K    E + I G  +I++     K  + N + + GL +NL+S+ ++
Sbjct: 128 RYFSKLDKSIKVPIKVGNREVVMIAGKGDITVCTSFRKKVIRNVFLVSGLEKNLLSVPQI 187

Query: 365 ITNNYQLIAYQDAQRKICCRIT*NNKIITEGYEHNDLFAMK---PVTTEIFLTEEEDNKL 195
           I+  Y ++     + K C  +    K I E    N  F ++      +E+  +EEE  +L
Sbjct: 188 ISVGYSVLF----ENKCCTNLDRTGKKIMEIQRVNKSFPIRWNSSQESELVTSEEEGMEL 243

Query: 194 WHRRSGHIKNIYFHKV-NKATFDG-PTINKKSLNCEDFILAKMHKLSFKLKIKNLT-NIL 24
           WHRR GH+ N    ++ NK   DG P  +     C    L K  + +F  + +  T   L
Sbjct: 244 WHRRLGHVGNSRMEQMHNKKMVDGFPNFHVNKEICGVCKLGKQVREAFPTESQTKTKEKL 303

Query: 23  EIVHSDI 3
           EIVH+++
Sbjct: 304 EIVHTNV 310


>gb|EXB35423.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
           notabilis]
          Length = 443

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 21/189 (11%)
 Frame = -1

Query: 506 VKTAGEEKLEILGICNISLTFGDNK-ISLNNTYFLKGLRRNLISLYRLITNNYQLIAYQD 330
           +K     ++    +  + L F +NK + LNN YF+  +RRNLIS+ +L    +++    D
Sbjct: 235 IKVGNGARVTAKAVGEVRLHFRENKFLVLNNVYFIPDIRRNLISMSKLFEQFFKVYFVND 294

Query: 329 AQRKICCRIT*NNKIITEGYEHNDLFAMKPV-----TTEIFLTEEEDNK----------- 198
                   I+ N   I  G   + L+ +KP+      TE+F   E  NK           
Sbjct: 295 -----FVHISRNGLNIYSGRLDDGLYCIKPIPNSLLNTEMFRVAEPKNKKQKISHENNTY 349

Query: 197 LWHRRSGHIKNIYFHKVNKATFDGP----TINKKSLNCEDFILAKMHKLSFKLKIKNLTN 30
           LWH   GHI     +++ +   DGP    T+  + L C   +  KM K  F  K K  T 
Sbjct: 350 LWHLGLGHIN---LNRIERLVKDGPLRELTVG-ELLVCRSCLEGKMTKRPFTAKGKIATK 405

Query: 29  ILEIVHSDI 3
            L+ +H D+
Sbjct: 406 PLQPIHLDV 414


>ref|XP_002064813.1| GK15001 [Drosophila willistoni] gi|194160898|gb|EDW75799.1| GK15001
           [Drosophila willistoni]
          Length = 1249

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 45/174 (25%), Positives = 88/174 (50%), Gaps = 5/174 (2%)
 Frame = -1

Query: 509 YVKTAGEEKLEI-LGICNISLTFGDNKISLNNTYFLKGLRRNLISLYRLITNNYQLIAYQ 333
           Y++  G+ K+ I  GIC         K+++NN  ++ GL  N +S+ R+I  N  ++ ++
Sbjct: 303 YLRAEGKGKVTIRTGIC---------KLTMNNVLYVPGLAGNFMSVARVIEYN-SVVHFE 352

Query: 332 DAQRKICCRIT*NNKIITEGYEHNDLFAMKPVTTEIFLTEEEDNKLWHRRSGHIKNIYFH 153
               K   +I  N + I +  +  +LF  +  +  +F    ED  LWH+R GH+      
Sbjct: 353 ----KHMAKIIQNGECILKAKKIGNLFVFEAESENLFAAVGEDVSLWHKRFGHLNYKSLT 408

Query: 152 KV-NKATFDGPTINKKSLN--CEDFILAKMHKLSF-KLKIKNLTNILEIVHSDI 3
           ++ +K    G ++   + N  C+  +++K+H   F K+     + +L++VHSD+
Sbjct: 409 QIASKGLVRGLSVTNFAPNTPCKTCMVSKIHVQPFPKMTESRSSELLQLVHSDV 462


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 2/170 (1%)
 Frame = -1

Query: 506  VKTAGEEKLEILGICNISLTFGDNKISLNNTYFLKGLRRNLISLYRLITNNYQLIAYQDA 327
            VK   + +L + G  ++ +   D  +   N +++ GLR+NLIS+  L  N Y        
Sbjct: 647  VKLGDDGELGVKGSGSVQIKMYDGLVRTLNAWYVPGLRKNLISVGTLDKNGYTFSGSGGV 706

Query: 326  QRKICCRIT*NNKIITEGYEHNDLFAMKPVTTEIFLTEEEDN--KLWHRRSGHIKNIYFH 153
                  R++    ++ +G   + ++ +   +       EEDN  +LWHRR GH+      
Sbjct: 707  -----LRVSKGALVVMKGRLQHGIYTLMGSSVLGTAAVEEDNCTELWHRRLGHMSEKGLS 761

Query: 152  KVNKATFDGPTINKKSLNCEDFILAKMHKLSFKLKIKNLTNILEIVHSDI 3
             ++K          K   CE  ++ K  ++ F +       +LE +HSD+
Sbjct: 762  ILSKQGLLSGAETGKLKFCETCVMGKQRRVKFSMGSHTTNGVLEYIHSDL 811


>gb|ADN33807.1| ty1-copia retrotransposon protein [Cucumis melo subsp. melo]
          Length = 1038

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
 Frame = -1

Query: 458 ISLTFGDNKISLNNTYFLKGLRRNLISLYRLITNNYQLIAYQDAQRKICCRIT*NNKIIT 279
           + LT G   +SL+N  ++  LRRNL+S   L     +++   D   K+   +T N   + 
Sbjct: 382 LKLTSGKT-LSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGD---KVV--LTKNGNFVG 435

Query: 278 EGYEHNDLFAMKPVTTEIFLTEE----EDNKLWHRRSGHIKNIYFHKVNKATFDGPTINK 111
           +GY  N LF +  ++     +      E   LWH R GH+      K+        +   
Sbjct: 436 KGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDMRLINTSETH 495

Query: 110 KSLNCEDFILAKMHKLSFKLKIKNLTNILEIVHSDI 3
           ++  C   I +K HK  FK      T +LE+++SD+
Sbjct: 496 ETGKCPVCIESKFHKKPFKPVEYRTTELLELIYSDL 531


>emb|CAN62421.1| hypothetical protein VITISV_020606 [Vitis vinifera]
          Length = 1798

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 42/173 (24%), Positives = 82/173 (47%), Gaps = 5/173 (2%)
 Frame = -1

Query: 506  VKTAGEEKLEILGICNISLTFGDNKISLNNTYFLKGLRRNLISLYRLITNNYQLIAYQDA 327
            VK    E +++ G   I+++       + N  ++  L +NL+S+ +++ N Y +      
Sbjct: 541  VKLGNGEVVQVKGKGTIAISTKRGTKIVTNVLYIPDLDQNLLSVAQMLRNGYAI----SF 596

Query: 326  QRKICCRIT*NNKIITEGYEHNDLFAMK--PVTTEIFLTEEEDNKLWHRRSGH--IKNIY 159
            +   C     + K  T+   + + F +K   V   +F  + +++ +WH+R GH  +K++ 
Sbjct: 597  KENFCFITNVHEKETTKIKMNGNSFYLKLDLVEGHVFSAKIDESVVWHKRYGHFNLKSLR 656

Query: 158  FHKVNKATFDGPTINKKSLNCEDFILAKMHKLSFKLKI-KNLTNILEIVHSDI 3
            F +      D P I+  +  CE   L K  +  F   + K  T+ LE++HSDI
Sbjct: 657  FMQEAGMVEDMPEISVNAQTCESCELGKQQRQPFPQNMSKRATHKLELIHSDI 709


>emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana]
           gi|7267743|emb|CAB78169.1| putative retrotransposon
           [Arabidopsis thaliana]
          Length = 1230

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 4/155 (2%)
 Frame = -1

Query: 455 SLTFGDNKISLNNTYFLKGLRRNLISLYRLITNNYQLIAYQDAQRKICCRIT*NNKIITE 276
           ++  G+   S     ++  + RNL+S+  L  + Y   +++     +  +      +I  
Sbjct: 339 TVRMGNKSTSKFRVKYIPDMDRNLLSMGTLEEHGY---SFESKNGVLVVKEGTRTLLIGS 395

Query: 275 GYEHNDLFAMKPVTTEIFLTEE--EDNKLWHRRSGHI--KNIYFHKVNKATFDGPTINKK 108
            +E   L   KP  +     E   +D  LWHRR GHI  KN+    V K   DG  ++K 
Sbjct: 396 RHEKLYLLQGKPEVSHSMTVERRNDDTVLWHRRLGHISQKNMDI-LVKKGYLDGKKVSKL 454

Query: 107 SLNCEDFILAKMHKLSFKLKIKNLTNILEIVHSDI 3
            L CED I  K  +LSF +   N  + L  VHSD+
Sbjct: 455 EL-CEDCIYGKARRLSFVVATHNTEDKLNYVHSDL 488


>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1363

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 8/151 (5%)
 Frame = -1

Query: 431 ISLNNTYFLKGLRRNLISLYRLITNNYQLIAYQDAQRKICCRIT*NNKIITEGYEHNDLF 252
           ++L N  ++  + RNL+SL       ++   ++        RI   N+++ EG  ++ L+
Sbjct: 370 VTLQNVRYIPDMDRNLLSL-----GTFEKAGHKFESENGMLRIKSGNQVLLEGRRYDTLY 424

Query: 251 AM--KPVTTEIFLTEE--EDNKLWHRRSGHIKNIYFHKVNKATFDGPTINKKSLN----C 96
            +  KP T E        +D  LWHRR  H+       + K  F    ++KK ++    C
Sbjct: 425 ILHGKPATDESLAVARANDDTVLWHRRLCHMSQKNMSLLIKKGF----LDKKKVSMLDTC 480

Query: 95  EDFILAKMHKLSFKLKIKNLTNILEIVHSDI 3
           ED I  +  K+ F L   +    LE VHSD+
Sbjct: 481 EDCIYGRAKKIGFNLAQHDTKKKLEYVHSDL 511