BLASTX nr result
ID: Ephedra25_contig00026721
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00026721
(474 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_002519950.1| RNA polymerase beta chain (chloroplast) [Eph... 310 1e-82
dbj|BAH11233.1| RNA polymerase beta chain (chloroplast) [Welwits... 241 5e-62
ref|YP_001876572.1| RNA polymerase beta subunit [Welwitschia mir... 241 5e-62
ref|YP_008082190.1| RNA polymerase beta subunit (chloroplast) [G... 234 1e-59
ref|YP_002519787.1| RNA polymerase beta chain [Gnetum parvifoliu... 234 1e-59
dbj|BAN16890.1| RNA polymerase beta chain (chloroplast) [Gnetum ... 230 1e-58
ref|YP_008082826.1| RNA polymerase beta subunit (chloroplast) [P... 210 1e-52
ref|YP_004891746.1| RNA polymerase beta chain (chloroplast) [Pic... 210 1e-52
ref|YP_002905075.1| RNA polymerase beta subunit [Picea sitchensi... 210 1e-52
ref|YP_004891192.1| RNA polymerase beta chain (chloroplast) [Lar... 209 2e-52
gb|ACP52193.1| RNA polymerase beta subunit [Larix occidentalis] 209 2e-52
ref|YP_003934484.1| RNA polymerase beta chain [Cathaya argyrophy... 209 4e-52
gb|AET47520.1| RNA polymerase beta subunit (chloroplast) [Pinus ... 207 9e-52
gb|ACP52002.1| RNA polymerase beta subunit [Pinus leiophylla var... 207 9e-52
gb|AET47664.1| RNA polymerase beta subunit (chloroplast) [Pinus ... 207 1e-51
gb|AET46371.1| RNA polymerase beta subunit (chloroplast) [Pseudo... 207 1e-51
ref|YP_004276368.1| RNA polymerase beta subunit [Pinus nelsonii]... 207 1e-51
ref|YP_004891424.1| RNA polymerase beta chain (chloroplast) [Pse... 207 1e-51
ref|NP_817162.1| RNA polymerase beta subunit [Pinus koraiensis] ... 207 1e-51
gb|AET49392.1| RNA polymerase beta subunit (chloroplast) [Pinus ... 207 1e-51
>ref|YP_002519950.1| RNA polymerase beta chain (chloroplast) [Ephedra equisetina]
gi|220983551|dbj|BAH11318.1| RNA polymerase beta chain
(chloroplast) [Ephedra equisetina]
Length = 1100
Score = 310 bits (795), Expect = 1e-82
Identities = 156/157 (99%), Positives = 157/157 (100%)
Frame = +2
Query: 2 EDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPL 181
EDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPL
Sbjct: 464 EDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPL 523
Query: 182 QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATS 361
QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQ+ALDSRILATS
Sbjct: 524 QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQVALDSRILATS 583
Query: 362 IQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNI 472
IQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNI
Sbjct: 584 IQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSNI 620
>dbj|BAH11233.1| RNA polymerase beta chain (chloroplast) [Welwitschia mirabilis]
Length = 1108
Score = 241 bits (616), Expect = 5e-62
Identities = 119/156 (76%), Positives = 136/156 (87%)
Frame = +2
Query: 2 EDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPL 181
++ ++SYLLP+ED++YRIAL N LAVD K+PEKKNTPTQYRQ+FLS+AWEQIHFRSILP
Sbjct: 471 KEQLISYLLPSEDESYRIALGNFLAVDQKIPEKKNTPTQYRQEFLSIAWEQIHFRSILPF 530
Query: 182 QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATS 361
QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVP LQPEKCIVGTGLE Q+ALDS LA S
Sbjct: 531 QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPPLQPEKCIVGTGLESQVALDSGNLAIS 590
Query: 362 IQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSN 469
QEGRI+Y D++TI+SS T + L+ YQRSNSN
Sbjct: 591 KQEGRIKYIDAETIISSSKGSTTQIELQTYQRSNSN 626
>ref|YP_001876572.1| RNA polymerase beta subunit [Welwitschia mirabilis]
gi|163311627|gb|ABY26785.1| RNA polymerase beta subunit
[Welwitschia mirabilis]
Length = 1108
Score = 241 bits (616), Expect = 5e-62
Identities = 119/156 (76%), Positives = 136/156 (87%)
Frame = +2
Query: 2 EDHMVSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPL 181
++ ++SYLLP+ED++YRIAL N LAVD K+PEKKNTPTQYRQ+FLS+AWEQIHFRSILP
Sbjct: 471 KEQLISYLLPSEDESYRIALGNFLAVDQKIPEKKNTPTQYRQEFLSIAWEQIHFRSILPF 530
Query: 182 QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATS 361
QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVP LQPEKCIVGTGLE Q+ALDS LA S
Sbjct: 531 QYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPPLQPEKCIVGTGLESQVALDSGNLAIS 590
Query: 362 IQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSN 469
QEGRI+Y D++TI+SS T + L+ YQRSNSN
Sbjct: 591 KQEGRIKYIDAETIISSSKGNTTQIELQTYQRSNSN 626
>ref|YP_008082190.1| RNA polymerase beta subunit (chloroplast) [Gnetum montanum]
gi|490345015|gb|AGL11035.1| RNA polymerase beta subunit
(chloroplast) [Gnetum montanum]
Length = 1109
Score = 234 bits (596), Expect = 1e-59
Identities = 117/152 (76%), Positives = 129/152 (84%)
Frame = +2
Query: 14 VSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 193
+ YL P+ED YRIAL N L+VD K+PEKKNTPTQY Q+FLS+AWEQIHFR LPLQYFS
Sbjct: 476 IVYLSPSEDVYYRIALGNCLSVDQKIPEKKNTPTQYHQEFLSIAWEQIHFRCFLPLQYFS 535
Query: 194 IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 373
IGVSLIPFLEHNDATRALMGSNMQRQAVP +QPEKCIVGTGLEGQ+ALDS LA S QEG
Sbjct: 536 IGVSLIPFLEHNDATRALMGSNMQRQAVPSVQPEKCIVGTGLEGQVALDSGALAISTQEG 595
Query: 374 RIEYFDSKTIVSSLNRKTIETILEIYQRSNSN 469
RI+Y D+ TIVS L T +T L+IYQRSNSN
Sbjct: 596 RIQYSDAATIVSVLKGNTTQTELQIYQRSNSN 627
>ref|YP_002519787.1| RNA polymerase beta chain [Gnetum parvifolium]
gi|158513793|sp|A6BM50.1|RPOB_GNEPA RecName:
Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|149941456|dbj|BAF64895.1| RNA polymerase beta subunit
[Gnetum parvifolium] gi|220983530|dbj|BAH11298.1| RNA
polymerase beta chain (chloroplast) [Gnetum parvifolium]
Length = 1108
Score = 234 bits (596), Expect = 1e-59
Identities = 117/152 (76%), Positives = 129/152 (84%)
Frame = +2
Query: 14 VSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 193
+ YL P+ED YRIAL N L+VD K+PEKKNTPTQY Q+FLS+AWEQIHFR LPLQYFS
Sbjct: 476 IVYLSPSEDVYYRIALGNCLSVDQKIPEKKNTPTQYHQEFLSIAWEQIHFRCFLPLQYFS 535
Query: 194 IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 373
IGVSLIPFLEHNDATRALMGSNMQRQAVP +QPEKCIVGTGLEGQ+ALDS LA S QEG
Sbjct: 536 IGVSLIPFLEHNDATRALMGSNMQRQAVPSVQPEKCIVGTGLEGQVALDSGALAISTQEG 595
Query: 374 RIEYFDSKTIVSSLNRKTIETILEIYQRSNSN 469
RI+Y D+ TIVS L T +T L+IYQRSNSN
Sbjct: 596 RIQYSDAATIVSVLKGNTTQTELQIYQRSNSN 627
>dbj|BAN16890.1| RNA polymerase beta chain (chloroplast) [Gnetum ula]
Length = 1110
Score = 230 bits (587), Expect = 1e-58
Identities = 115/152 (75%), Positives = 128/152 (84%)
Frame = +2
Query: 14 VSYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 193
+ YL P+ED YRIAL N L+VD K+PEKKNTPTQY Q+FLS+AWEQIHFR L LQYFS
Sbjct: 477 IVYLSPSEDVYYRIALGNCLSVDQKIPEKKNTPTQYHQEFLSIAWEQIHFRCFLTLQYFS 536
Query: 194 IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 373
+GVSLIPFLEHNDATRALMGSNMQRQAVP +QPEKCIVGTGLEGQ+ALDS LA S QEG
Sbjct: 537 VGVSLIPFLEHNDATRALMGSNMQRQAVPSVQPEKCIVGTGLEGQVALDSGALAISTQEG 596
Query: 374 RIEYFDSKTIVSSLNRKTIETILEIYQRSNSN 469
RI+Y D+ TIVS L T +T L+IYQRSNSN
Sbjct: 597 RIQYSDAATIVSVLKGNTTQTELQIYQRSNSN 628
>ref|YP_008082826.1| RNA polymerase beta subunit (chloroplast) [Picea abies]
gi|502524860|emb|CCW23110.1| RNA polymerase beta subunit
(chloroplast) [Picea abies]
Length = 1076
Score = 210 bits (535), Expect = 1e-52
Identities = 107/158 (67%), Positives = 126/158 (79%), Gaps = 2/158 (1%)
Frame = +2
Query: 2 EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
E+HMV YLLP ED++ YRIA N LA++ + E++ TP +YRQ+F+ +AWEQIHFRSI
Sbjct: 467 EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525
Query: 176 PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL QPEKCI GTGLEGQ ALDS +A
Sbjct: 526 PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFQPEKCIAGTGLEGQAALDSGSVA 585
Query: 356 TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSN 469
+ QEGRIEY D+ I SS+N T+ T L IYQRSN+N
Sbjct: 586 IATQEGRIEYIDAVNITSSVNGDTVRTELVIYQRSNTN 623
>ref|YP_004891746.1| RNA polymerase beta chain (chloroplast) [Picea morrisonicola]
gi|307683667|dbj|BAJ19812.1| RNA polymerase beta chain
[Picea morrisonicola] gi|347977527|dbj|BAK86484.1| RNA
polymerase beta chain (chloroplast) [Picea
morrisonicola]
Length = 1076
Score = 210 bits (535), Expect = 1e-52
Identities = 107/158 (67%), Positives = 126/158 (79%), Gaps = 2/158 (1%)
Frame = +2
Query: 2 EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
E+HMV YLLP ED++ YRIA N LA++ + E++ TP +YRQ+F+ +AWEQIHFRSI
Sbjct: 467 EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525
Query: 176 PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL QPEKCI GTGLEGQ ALDS +A
Sbjct: 526 PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFQPEKCIAGTGLEGQAALDSGSVA 585
Query: 356 TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSN 469
+ QEGRIEY D+ I SS+N T+ T L IYQRSN+N
Sbjct: 586 IATQEGRIEYIDAVNITSSVNGDTVRTELVIYQRSNTN 623
>ref|YP_002905075.1| RNA polymerase beta subunit [Picea sitchensis]
gi|226875285|gb|ACO89024.1| RNA polymerase beta subunit
[Picea sitchensis]
Length = 1076
Score = 210 bits (535), Expect = 1e-52
Identities = 107/158 (67%), Positives = 126/158 (79%), Gaps = 2/158 (1%)
Frame = +2
Query: 2 EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
E+HMV YLLP ED++ YRIA N LA++ + E++ TP +YRQ+F+ +AWEQIHFRSI
Sbjct: 467 EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525
Query: 176 PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL QPEKCI GTGLEGQ ALDS +A
Sbjct: 526 PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFQPEKCIAGTGLEGQAALDSGSVA 585
Query: 356 TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSN 469
+ QEGRIEY D+ I SS+N T+ T L IYQRSN+N
Sbjct: 586 IATQEGRIEYIDAVNITSSVNGDTVRTELVIYQRSNTN 623
>ref|YP_004891192.1| RNA polymerase beta chain (chloroplast) [Larix decidua]
gi|307683573|dbj|BAJ19765.1| RNA polymerase beta chain
[Larix decidua] gi|347977543|dbj|BAK86499.1| RNA
polymerase beta chain (chloroplast) [Larix decidua]
Length = 1076
Score = 209 bits (533), Expect = 2e-52
Identities = 106/158 (67%), Positives = 126/158 (79%), Gaps = 2/158 (1%)
Frame = +2
Query: 2 EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
E+HMV YLLP ED++ YRIA N LA++ + E++ TP +YRQ+F+ +AWEQIHFRSI
Sbjct: 467 EEHMV-YLLPGEDEDEYYRIATGNYLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525
Query: 176 PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS +A
Sbjct: 526 PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 585
Query: 356 TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSN 469
+ QEGRIEY D+ I SS+N T+ T L IYQRSN+N
Sbjct: 586 IATQEGRIEYIDATNITSSVNGDTVRTELVIYQRSNTN 623
>gb|ACP52193.1| RNA polymerase beta subunit [Larix occidentalis]
Length = 1076
Score = 209 bits (533), Expect = 2e-52
Identities = 106/158 (67%), Positives = 126/158 (79%), Gaps = 2/158 (1%)
Frame = +2
Query: 2 EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
E+HMV YLLP ED++ YRIA N LA++ + E++ TP +YRQ+F+ +AWEQIHFRSI
Sbjct: 467 EEHMV-YLLPGEDEDEYYRIATGNYLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525
Query: 176 PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS +A
Sbjct: 526 PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 585
Query: 356 TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSN 469
+ QEGRIEY D+ I SS+N T+ T L IYQRSN+N
Sbjct: 586 IATQEGRIEYIDATNITSSVNGDTVRTELVIYQRSNTN 623
>ref|YP_003934484.1| RNA polymerase beta chain [Cathaya argyrophylla]
gi|307683330|dbj|BAJ19637.1| RNA polymerase beta chain
(chloroplast) [Cathaya argyrophylla]
Length = 1076
Score = 209 bits (531), Expect = 4e-52
Identities = 106/158 (67%), Positives = 126/158 (79%), Gaps = 2/158 (1%)
Frame = +2
Query: 2 EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
E+HMV YLLP ED++ YRIA N LA++ + E++ TP +YRQ+F+ +AWEQIHFRSI
Sbjct: 467 EEHMV-YLLPGEDEDEYYRIATGNYLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525
Query: 176 PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
PLQYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS +A
Sbjct: 526 PLQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 585
Query: 356 TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSN 469
+ QEGRIEY D+ I SS+N T+ T L IY RSN+N
Sbjct: 586 IATQEGRIEYIDAVNITSSVNGDTVRTKLVIYNRSNTN 623
>gb|AET47520.1| RNA polymerase beta subunit (chloroplast) [Pinus lumholtzii]
gi|356999718|gb|AET47592.1| RNA polymerase beta subunit
(chloroplast) [Pinus leiophylla]
gi|357000519|gb|AET48382.1| RNA polymerase beta subunit
(chloroplast) [Pinus greggii]
Length = 1074
Score = 207 bits (528), Expect = 9e-52
Identities = 105/158 (66%), Positives = 125/158 (79%), Gaps = 2/158 (1%)
Frame = +2
Query: 2 EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
E+HMV YLLP ED++ YRIA N LA++ + E++ TP +YRQ+F+ +AWEQIHFRSI
Sbjct: 465 EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQTTPARYRQEFIVIAWEQIHFRSIF 523
Query: 176 PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS +A
Sbjct: 524 PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 583
Query: 356 TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSN 469
+ QEGRIEY D+ I SS+N T+ T IYQRSN+N
Sbjct: 584 IATQEGRIEYIDAVNITSSVNGDTVRTESVIYQRSNTN 621
>gb|ACP52002.1| RNA polymerase beta subunit [Pinus leiophylla var. chihuahuana]
gi|356996525|gb|AET44443.1| RNA polymerase beta subunit
(chloroplast) [Pinus leiophylla var. chihuahuana]
Length = 1074
Score = 207 bits (528), Expect = 9e-52
Identities = 105/158 (66%), Positives = 125/158 (79%), Gaps = 2/158 (1%)
Frame = +2
Query: 2 EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
E+HMV YLLP ED++ YRIA N LA++ + E++ TP +YRQ+F+ +AWEQIHFRSI
Sbjct: 465 EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQTTPARYRQEFIVIAWEQIHFRSIF 523
Query: 176 PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS +A
Sbjct: 524 PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 583
Query: 356 TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSN 469
+ QEGRIEY D+ I SS+N T+ T IYQRSN+N
Sbjct: 584 IATQEGRIEYIDAVNITSSVNGDTVRTESVIYQRSNTN 621
>gb|AET47664.1| RNA polymerase beta subunit (chloroplast) [Pinus lawsonii]
gi|356999864|gb|AET47736.1| RNA polymerase beta subunit
(chloroplast) [Pinus pringlei]
Length = 1074
Score = 207 bits (527), Expect = 1e-51
Identities = 105/158 (66%), Positives = 125/158 (79%), Gaps = 2/158 (1%)
Frame = +2
Query: 2 EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
E+HMV YLLP ED++ YRIA N LA++ + E++ TP +YRQ+F+ +AWEQIHFRSI
Sbjct: 465 EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQXTPARYRQEFIVIAWEQIHFRSIF 523
Query: 176 PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS +A
Sbjct: 524 PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 583
Query: 356 TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSN 469
+ QEGRIEY D+ I SS+N T+ T IYQRSN+N
Sbjct: 584 IATQEGRIEYIDAVNITSSVNGDTVRTESVIYQRSNTN 621
>gb|AET46371.1| RNA polymerase beta subunit (chloroplast) [Pseudotsuga menziesii
var. menziesii]
Length = 1076
Score = 207 bits (527), Expect = 1e-51
Identities = 105/158 (66%), Positives = 125/158 (79%), Gaps = 2/158 (1%)
Frame = +2
Query: 2 EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
E+HMV YLLP ED++ YRIA N LA++ + E++ TP +YRQ+F+ +AWEQIHFRSI
Sbjct: 467 EEHMV-YLLPGEDEDEYYRIATGNYLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525
Query: 176 PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS +A
Sbjct: 526 PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 585
Query: 356 TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSN 469
+ QEGRIEY D+ I SS+N T+ T IYQRSN+N
Sbjct: 586 IATQEGRIEYIDATNITSSVNGDTVRTESVIYQRSNTN 623
>ref|YP_004276368.1| RNA polymerase beta subunit [Pinus nelsonii]
gi|323522686|gb|ADX94934.1| RNA polymerase beta subunit
[Pinus nelsonii]
Length = 1075
Score = 207 bits (527), Expect = 1e-51
Identities = 105/158 (66%), Positives = 125/158 (79%), Gaps = 2/158 (1%)
Frame = +2
Query: 2 EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
E+HMV YLLP ED++ YRIA N LA++ + E++ TP +YRQ+F+ +AWEQIHFRSI
Sbjct: 466 EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 524
Query: 176 PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS +A
Sbjct: 525 PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 584
Query: 356 TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSN 469
+ QEGRIEY D+ I SS+N T+ T IYQRSN+N
Sbjct: 585 IATQEGRIEYIDAVNITSSINGNTVRTESVIYQRSNTN 622
>ref|YP_004891424.1| RNA polymerase beta chain (chloroplast) [Pseudotsuga sinensis var.
wilsoniana] gi|307683479|dbj|BAJ19718.1| RNA polymerase
beta chain [Pseudotsuga sinensis var. wilsoniana]
gi|347977642|dbj|BAK86597.1| RNA polymerase beta chain
[Pseudotsuga sinensis var. wilsoniana]
Length = 1076
Score = 207 bits (527), Expect = 1e-51
Identities = 105/158 (66%), Positives = 125/158 (79%), Gaps = 2/158 (1%)
Frame = +2
Query: 2 EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
E+HMV YLLP ED++ YRIA N LA++ + E++ TP +YRQ+F+ +AWEQIHFRSI
Sbjct: 467 EEHMV-YLLPGEDEDEYYRIATGNYLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 525
Query: 176 PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS +A
Sbjct: 526 PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 585
Query: 356 TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSN 469
+ QEGRIEY D+ I SS+N T+ T IYQRSN+N
Sbjct: 586 IATQEGRIEYIDATNITSSVNGDTVRTESVIYQRSNTN 623
>ref|NP_817162.1| RNA polymerase beta subunit [Pinus koraiensis]
gi|41017711|sp|Q85X54.1|RPOB_PINKO RecName:
Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|29469681|gb|AAO74009.1| RNA polymerase beta subunit
[Pinus koraiensis] gi|257042642|gb|ACV32912.1| RNA
polymerase beta subunit [Pinus monticola]
gi|257042727|gb|ACV32994.1| RNA polymerase beta subunit
[Pinus monticola] gi|356997033|gb|AET44944.1| RNA
polymerase beta subunit (chloroplast) [Pinus amamiana]
gi|356998338|gb|AET46231.1| RNA polymerase beta subunit
(chloroplast) [Pinus pumila]
Length = 1075
Score = 207 bits (526), Expect = 1e-51
Identities = 105/158 (66%), Positives = 125/158 (79%), Gaps = 2/158 (1%)
Frame = +2
Query: 2 EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
E+HMV YLLP ED++ YRIA N LA++ + E++ TP +YRQ+F+ +AWEQIHFRSI
Sbjct: 466 EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 524
Query: 176 PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS +A
Sbjct: 525 PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 584
Query: 356 TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSN 469
+ QEGRIEY D+ I SS+N T+ T IYQRSN+N
Sbjct: 585 IATQEGRIEYIDAVNITSSINGDTVRTESVIYQRSNTN 622
>gb|AET49392.1| RNA polymerase beta subunit (chloroplast) [Pinus fenzeliana var.
dabeshanensis]
Length = 1075
Score = 207 bits (526), Expect = 1e-51
Identities = 105/158 (66%), Positives = 125/158 (79%), Gaps = 2/158 (1%)
Frame = +2
Query: 2 EDHMVSYLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSIL 175
E+HMV YLLP ED++ YRIA N LA++ + E++ TP +YRQ+F+ +AWEQIHFRSI
Sbjct: 466 EEHMV-YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIF 524
Query: 176 PLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILA 355
P QYFS+GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS +A
Sbjct: 525 PFQYFSVGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVA 584
Query: 356 TSIQEGRIEYFDSKTIVSSLNRKTIETILEIYQRSNSN 469
+ QEGRIEY D+ I SS+N T+ T IYQRSN+N
Sbjct: 585 IATQEGRIEYIDAVNITSSINGDTVRTESVIYQRSNTN 622