BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00025801
         (605 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY07997.1| Uncharacterized protein TCM_022315 [Theobroma cacao]    96   1e-17
gb|EMJ08998.1| hypothetical protein PRUPE_ppa024472mg, partial [...    96   1e-17
ref|XP_004963682.1| PREDICTED: uncharacterized protein LOC101781...    95   2e-17
dbj|BAC82613.1| pol-like protein [Danio rerio]                         95   2e-17
emb|CAE03781.1| OSJNBa0063G07.5 [Oryza sativa Japonica Group]          92   8e-17
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    92   8e-17
emb|CAH66559.1| OSIGBa0113K06.5 [Oryza sativa Indica Group]            92   8e-17
gb|ABF98785.1| retrotransposon protein, putative, unclassified [...    92   1e-16
gb|AAP44701.1| putative reverse transcriptase [Oryza sativa Japo...    92   1e-16
gb|AAX95804.1| retrotransposon protein, putative, unclassified [...    92   1e-16
emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]                 90   4e-16
emb|CAE02411.2| OSJNBa0024J22.19 [Oryza sativa Japonica Group]         90   4e-16
emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulga...    90   5e-16
ref|XP_002443403.1| hypothetical protein SORBIDRAFT_08g018960 [S...    90   5e-16
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...    89   9e-16
ref|XP_002443080.1| hypothetical protein SORBIDRAFT_08g007680 [S...    89   9e-16
gb|AAX95233.1| retrotransposon protein, putative, unclassified [...    89   1e-15
gb|AAX95130.1| retrotransposon protein, putative, unclassified [...    89   1e-15
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    88   2e-15
ref|XP_003571395.1| PREDICTED: uncharacterized protein LOC100824...    88   2e-15

>gb|EOY07997.1| Uncharacterized protein TCM_022315 [Theobroma cacao]
          Length = 667

 Score = 95.5 bits (236), Expect = 1e-17
 Identities = 50/157 (31%), Positives = 85/157 (54%)
 Frame = +1

Query: 4   KTQQHPLFIKLDFLKAYDSVEWNFLFAVLKRFGLGDMMIRHIHILLNGASSCVAINGLIS 183
           K  +    +K+DF KAYDSV+W FL  V++  G G+   + +   ++ A   V +NG+ +
Sbjct: 17  KKNEGGFLLKVDFKKAYDSVDWTFLQLVMRNIGFGERWRKWVMGCVSNAKVSVLVNGVAT 76

Query: 184 PPFQV*HSVRQGCPLSPYLFLMVADSLTQMVKCYNRMGRIIGIQLPLDHEQFIQQSYVDD 363
            PF++   +RQGCPLSP+LF +VA + +QM+     +G   GI + L   +     + DD
Sbjct: 77  EPFKMSRGLRQGCPLSPFLFNIVAKAFSQMMDGGEIVGLCKGIPIGLRGLRISHLQFADD 136

Query: 364 NFLVIREQEQNLQNCMELLSIFGQAFDVLVNNSKSGL 474
             + ++ + ++L N   +L  F     + +N  KS L
Sbjct: 137 TMIFLKSEIESLVNAKRILRCFQAISGLRINFHKSSL 173


>gb|EMJ08998.1| hypothetical protein PRUPE_ppa024472mg, partial [Prunus persica]
          Length = 920

 Score = 95.5 bits (236), Expect = 1e-17
 Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 7/201 (3%)
 Frame = +1

Query: 13  QHPLFIKLDFLKAYDSVEWNFLFAVLKRFGLGDMMIRHIHILLNGASSCVAINGLISPPF 192
           +H L +K+D  KAYD VEW+FL A+L + G  D  +R I   ++  S  V ING   P F
Sbjct: 149 RHELGLKVDMNKAYDRVEWDFLEALLCKLGFCDHWVRLIMACVSSVSYSVLINGKPGPTF 208

Query: 193 QV*HSVRQGCPLSPYLFLMVADSLTQ-MVKCYNRMGRIIGIQLPLDHEQFIQQSYVDDNF 369
           +    +RQG PLSPYLFL+V+D  ++ + KC +  G I GI++           + DD+ 
Sbjct: 209 RPSRGLRQGDPLSPYLFLLVSDVFSKNLSKCISG-GWIKGIKMAQRSPVLSHLLFADDSL 267

Query: 370 LVIREQEQNLQNCMELLSIFGQAFDVLVNNSKSGLFRPACNGSVPAWLSRWPGHLI---- 537
             +R    N +  M LL+ +  A   LVN+ KS L+    + + PA L    G ++    
Sbjct: 268 FFLRADVTNCRRFMHLLNRYCAASGQLVNHEKSCLY---FSSNTPAELKTTIGSILAVEG 324

Query: 538 --ENGSYVKILGIPFNFGSLK 594
               G+Y   LG+P  +G  K
Sbjct: 325 TDNPGNY---LGMPTMWGRSK 342


>ref|XP_004963682.1| PREDICTED: uncharacterized protein LOC101781465 [Setaria italica]
          Length = 986

 Score = 94.7 bits (234), Expect = 2e-17
 Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 1/195 (0%)
 Frame = +1

Query: 22  LFIKLDFLKAYDSVEWNFLFAVLKRFGLGDMMIRHIHILLNGASSCVAINGLISPPFQV* 201
           L +KLDF KA+DSV+W+ L +++   G        +  LL+ +   V +NG   P F   
Sbjct: 373 LVLKLDFAKAFDSVDWHCLLSIMATRGFPQQWNTWVSTLLHTSKLAVLVNGTPGPWFTCG 432

Query: 202 HSVRQGCPLSPYLFLMVADSLTQMVKCYNRMGRIIGIQLPLDHEQFIQQSYVDDNFLVIR 381
             +RQG PLSPYLFL+VAD L QMVK   R+   +   LP    Q     Y DD  ++++
Sbjct: 433 RGLRQGDPLSPYLFLLVADVLQQMVKQNRRIQHPVDATLPCPILQ-----YADDTLILLK 487

Query: 382 EQEQNLQNCMELLSIFGQAFDVLVNNSKSGLFRPACNGSVPAWLSRWPGHLIENGSYVK- 558
                LQ   E+L++F  +  + +N  KS +            L    G   + GS+ + 
Sbjct: 488 ADAAGLQTLKEVLNLFSDSTGLHINYHKSTMVPMGITDETATQLQGILG--CQLGSFPQT 545

Query: 559 ILGIPFNFGSLKLNS 603
            LG+P +   L+L++
Sbjct: 546 YLGLPLSNDKLRLSA 560


>dbj|BAC82613.1| pol-like protein [Danio rerio]
          Length = 1284

 Score = 94.7 bits (234), Expect = 2e-17
 Identities = 57/157 (36%), Positives = 88/157 (56%)
 Frame = +1

Query: 10   QQHPLFIKLDFLKAYDSVEWNFLFAVLKRFGLGDMMIRHIHILLNGASSCVAINGLISPP 189
            Q+    I LDF KA+D VE +FLF VLK FG G+  I+ + IL  GA + +  NG ++  
Sbjct: 599  QKDGFLISLDFEKAFDRVEHDFLFGVLKSFGFGENFIKWVQILYRGAVTRIKCNGFLTDC 658

Query: 190  FQV*HSVRQGCPLSPYLFLMVADSLTQMVKCYNRMGRIIGIQLPLDHEQFIQQSYVDDNF 369
            F++  S+RQGCPLS  L+ +VA+ L   VK      RI GI++     +  Q  Y DD  
Sbjct: 659  FKIRRSIRQGCPLSALLYALVAEPLGLAVK---HEDRIKGIEVEGGVNKIFQ--YADDTT 713

Query: 370  LVIREQEQNLQNCMELLSIFGQAFDVLVNNSKSGLFR 480
            L++++   +++  ME +  F +     +N +K+G  R
Sbjct: 714  LILQDL-ASVKQAMETVQHFCKGSGAKINENKTGYLR 749


>emb|CAE03781.1| OSJNBa0063G07.5 [Oryza sativa Japonica Group]
          Length = 681

 Score = 92.4 bits (228), Expect = 8e-17
 Identities = 62/198 (31%), Positives = 104/198 (52%), Gaps = 1/198 (0%)
 Frame = +1

Query: 4   KTQQHPLFIKLDFLKAYDSVEWNFLFAVLKRFGLGDMMIRHIHILLNGASSCVAINGLIS 183
           K+++  LF K+D  KA+D+V W +L  V++ FG G   +  I  LL  ++S + +NG+  
Sbjct: 151 KSKKQSLFFKVDIAKAFDTVCWPYLLEVMRYFGFGTRSLNWISNLLATSTSQILLNGVPR 210

Query: 184 PPFQV*HSVRQGCPLSPYLFLMVADSLTQMVKCYNRMGRIIGIQLPLDHEQFIQQSYVDD 363
           P       +RQG PLSP LF++  +   ++VK       +  I    D  +F    Y DD
Sbjct: 211 PSIAHVSGLRQGDPLSPMLFILAMEPFHRIVKAAESASLLSPIGGRFD--RFRCSLYADD 268

Query: 364 NFLVIREQEQNLQNCMELLSIFGQAFDVLVNNSKSGLFRPACNG-SVPAWLSRWPGHLIE 540
             L ++ +  +L   ++LLS F QA  +  N SK+ ++   C G  + + L+ +PG LI+
Sbjct: 269 VALFMKPEPNDLSALLQLLSFFAQASGLHTNVSKTEIYPIRCEGIDLTSLLANFPG-LIK 327

Query: 541 NGSYVKILGIPFNFGSLK 594
                + LG+P +F  L+
Sbjct: 328 QFP-CRYLGLPLHFRKLR 344


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 92.4 bits (228), Expect = 8e-17
 Identities = 58/190 (30%), Positives = 95/190 (50%)
 Frame = +1

Query: 28   IKLDFLKAYDSVEWNFLFAVLKRFGLGDMMIRHIHILLNGASSCVAINGLISPPFQV*HS 207
            +K+D  KA+D+++WNFL AVL+RFG  +  +  I ++L  A   V +NG     F   H 
Sbjct: 585  LKVDIAKAFDTLDWNFLLAVLQRFGFDEKFVHWILVILQSARLSVLVNGKAVGFFTCSHG 644

Query: 208  VRQGCPLSPYLFLMVADSLTQMVKCYNRMGRIIGIQLPLDHEQFIQQSYVDDNFLVIREQ 387
            VRQG PLSP LF +V + L++ +      G++I +             Y DD  +     
Sbjct: 645  VRQGDPLSPLLFCLVEEVLSRALSMAATDGQLIPMSYCRGVSFPTHILYADDVLIFCTGT 704

Query: 388  EQNLQNCMELLSIFGQAFDVLVNNSKSGLFRPACNGSVPAWLSRWPGHLIENGSYVKILG 567
            ++N++  +++ S + +    L+NN+KS  F  A  GS    +S   G  + +  +   LG
Sbjct: 705  KRNIRRLIKIFSQYSEVSGQLINNAKSRFFTSAMTGSRVQMISSLLGFNVGSLPFT-YLG 763

Query: 568  IPFNFGSLKL 597
             P   G  K+
Sbjct: 764  CPIFRGKPKV 773


>emb|CAH66559.1| OSIGBa0113K06.5 [Oryza sativa Indica Group]
          Length = 681

 Score = 92.4 bits (228), Expect = 8e-17
 Identities = 62/198 (31%), Positives = 104/198 (52%), Gaps = 1/198 (0%)
 Frame = +1

Query: 4   KTQQHPLFIKLDFLKAYDSVEWNFLFAVLKRFGLGDMMIRHIHILLNGASSCVAINGLIS 183
           K+++  LF K+D  KA+D+V W +L  V++ FG G   +  I  LL  ++S + +NG+  
Sbjct: 151 KSKKQSLFFKVDIAKAFDTVCWPYLLEVMRYFGFGTRSLNWISNLLATSTSQILLNGVPR 210

Query: 184 PPFQV*HSVRQGCPLSPYLFLMVADSLTQMVKCYNRMGRIIGIQLPLDHEQFIQQSYVDD 363
           P       +RQG PLSP LF++  +   ++VK       +  I    D  +F    Y DD
Sbjct: 211 PSIAHVSGLRQGDPLSPMLFILAMEPFHRIVKAAESASLLSPIGGRFD--RFRCSLYADD 268

Query: 364 NFLVIREQEQNLQNCMELLSIFGQAFDVLVNNSKSGLFRPACNG-SVPAWLSRWPGHLIE 540
             L ++ +  +L   ++LLS F QA  +  N SK+ ++   C G  + + L+ +PG LI+
Sbjct: 269 VALFMKPEPNDLSALLQLLSFFAQASGLHTNVSKTEIYPIRCEGIDLTSLLANFPG-LIK 327

Query: 541 NGSYVKILGIPFNFGSLK 594
                + LG+P +F  L+
Sbjct: 328 QFP-CRYLGLPLHFRKLR 344


>gb|ABF98785.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1060

 Score = 92.0 bits (227), Expect = 1e-16
 Identities = 53/162 (32%), Positives = 87/162 (53%)
 Frame = +1

Query: 4   KTQQHPLFIKLDFLKAYDSVEWNFLFAVLKRFGLGDMMIRHIHILLNGASSCVAINGLIS 183
           +++Q  LF KLD  KA+DSV W +L  +L++ G        + ++L+ +SS VA+NG+  
Sbjct: 507 RSKQPTLFFKLDIAKAFDSVSWEYLLTLLEKMGFSTRWRDWVALILSTSSSRVALNGIEG 566

Query: 184 PPFQV*HSVRQGCPLSPYLFLMVADSLTQMVKCYNRMGRIIGIQLPLDHEQFIQQSYVDD 363
                   +RQG PLSPYLF++  D L +++K     G +    L     +F    Y DD
Sbjct: 567 ERIDHHRGLRQGDPLSPYLFILAMDPLHRLLKIATDEGLL--SDLADRSARFRCSLYADD 624

Query: 364 NFLVIREQEQNLQNCMELLSIFGQAFDVLVNNSKSGLFRPAC 489
             + I+   Q++ + + +L+ FG A  +LVN  KS +   +C
Sbjct: 625 TAIFIKPSRQDVDSLISILNNFGSATGLLVNLHKSSVIPISC 666


>gb|AAP44701.1| putative reverse transcriptase [Oryza sativa Japonica Group]
           gi|40539049|gb|AAR87306.1| putative reverse
           transcriptase [Oryza sativa Japonica Group]
          Length = 1014

 Score = 92.0 bits (227), Expect = 1e-16
 Identities = 53/162 (32%), Positives = 87/162 (53%)
 Frame = +1

Query: 4   KTQQHPLFIKLDFLKAYDSVEWNFLFAVLKRFGLGDMMIRHIHILLNGASSCVAINGLIS 183
           +++Q  LF KLD  KA+DSV W +L  +L++ G        + ++L+ +SS VA+NG+  
Sbjct: 507 RSKQPTLFFKLDIAKAFDSVSWEYLLTLLEKMGFSTRWRDWVALILSTSSSRVALNGIEG 566

Query: 184 PPFQV*HSVRQGCPLSPYLFLMVADSLTQMVKCYNRMGRIIGIQLPLDHEQFIQQSYVDD 363
                   +RQG PLSPYLF++  D L +++K     G +    L     +F    Y DD
Sbjct: 567 ERIDHHRGLRQGDPLSPYLFILAMDPLHRLLKIATDEGLL--SDLADRSARFRCSLYADD 624

Query: 364 NFLVIREQEQNLQNCMELLSIFGQAFDVLVNNSKSGLFRPAC 489
             + I+   Q++ + + +L+ FG A  +LVN  KS +   +C
Sbjct: 625 TAIFIKPSRQDVDSLISILNNFGSATGLLVNLHKSSVIPISC 666


>gb|AAX95804.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group] gi|77548920|gb|ABA91717.1|
           retrotransposon protein, putative, unclassified [Oryza
           sativa Japonica Group]
          Length = 849

 Score = 91.7 bits (226), Expect = 1e-16
 Identities = 55/155 (35%), Positives = 78/155 (50%)
 Frame = +1

Query: 4   KTQQHPLFIKLDFLKAYDSVEWNFLFAVLKRFGLGDMMIRHIHILLNGASSCVAINGLIS 183
           KT Q  + +KLDF KAYD V+W+FLF VL++ G  D  I+ I          + ING I 
Sbjct: 288 KTHQSGIILKLDFEKAYDKVQWSFLFDVLQKKGFDDKWIKWIKSATIDGRVAININGEID 347

Query: 184 PPFQV*HSVRQGCPLSPYLFLMVADSLTQMVKCYNRMGRIIGIQLPLDHEQFIQQSYVDD 363
             F+    VRQG PLSP LF +VAD+L++++      G + G+   L         Y DD
Sbjct: 348 QYFKTFRGVRQGDPLSPLLFNIVADALSEILLKAKEAGHLEGLVPHLVQGGLTHLQYADD 407

Query: 364 NFLVIREQEQNLQNCMELLSIFGQAFDVLVNNSKS 468
             L +   +QN+     +L  F     + +N  KS
Sbjct: 408 TILFMTNNDQNVITTKFILHCFEAMSGLKINYQKS 442


>emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]
          Length = 1667

 Score = 90.1 bits (222), Expect = 4e-16
 Identities = 60/200 (30%), Positives = 106/200 (53%), Gaps = 3/200 (1%)
 Frame = +1

Query: 4    KTQQHPLFIKLDFLKAYDSVEWNFLFAVLKRFGLGDMMIRHIHILLNGASSCVAINGLIS 183
            +T++  LFIK+D  KA+D+V W++L  +L++FG G+  +  I  L + +SS V +NG  S
Sbjct: 1391 RTKKQSLFIKIDIAKAFDTVNWSYLLEILRQFGFGNRWLNWITNLFSTSSSQVLLNG--S 1448

Query: 184  PPFQV*HS--VRQGCPLSPYLFLMVADSLTQMVKCYNRMGRIIGIQLPLDHEQFIQQSYV 357
            P  ++ H+  +RQG PLSP LF++      +++K    +   +   L + + +F    Y 
Sbjct: 1449 PGQKINHARGLRQGDPLSPMLFILAMKPFHRILKEAENVN--VLAPLGVRNGRFRCSLYA 1506

Query: 358  DDNFLVIREQEQNLQNCMELLSIFGQAFDVLVNNSKSGLFRPACNG-SVPAWLSRWPGHL 534
            DD  +    +++ L     +L+ F QA  +  N +K+ ++   C G  +   L+ WPG  
Sbjct: 1507 DDVAVFANPKQEELTALSHILACFAQASGLHTNINKTEIYPIRCEGIDLQNLLAGWPGQ- 1565

Query: 535  IENGSYVKILGIPFNFGSLK 594
                   K LG+P +F  L+
Sbjct: 1566 -TKYFPCKYLGLPLHFRKLR 1584


>emb|CAE02411.2| OSJNBa0024J22.19 [Oryza sativa Japonica Group]
          Length = 1667

 Score = 90.1 bits (222), Expect = 4e-16
 Identities = 60/200 (30%), Positives = 106/200 (53%), Gaps = 3/200 (1%)
 Frame = +1

Query: 4    KTQQHPLFIKLDFLKAYDSVEWNFLFAVLKRFGLGDMMIRHIHILLNGASSCVAINGLIS 183
            +T++  LFIK+D  KA+D+V W++L  +L++FG G+  +  I  L + +SS V +NG  S
Sbjct: 1391 RTKKQSLFIKIDIAKAFDTVNWSYLLEILRQFGFGNRWLNWITNLFSTSSSQVLLNG--S 1448

Query: 184  PPFQV*HS--VRQGCPLSPYLFLMVADSLTQMVKCYNRMGRIIGIQLPLDHEQFIQQSYV 357
            P  ++ H+  +RQG PLSP LF++      +++K    +   +   L + + +F    Y 
Sbjct: 1449 PGQKINHARGLRQGDPLSPMLFILAMKPFHRILKEAENVN--VLAPLGVRNGRFRCSLYA 1506

Query: 358  DDNFLVIREQEQNLQNCMELLSIFGQAFDVLVNNSKSGLFRPACNG-SVPAWLSRWPGHL 534
            DD  +    +++ L     +L+ F QA  +  N +K+ ++   C G  +   L+ WPG  
Sbjct: 1507 DDVAVFANPKQEELTALSHILACFAQASGLHTNINKTEIYPIRCEGIDLQNLLAGWPGQ- 1565

Query: 535  IENGSYVKILGIPFNFGSLK 594
                   K LG+P +F  L+
Sbjct: 1566 -TKYFPCKYLGLPLHFRKLR 1584


>emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1383

 Score = 89.7 bits (221), Expect = 5e-16
 Identities = 60/192 (31%), Positives = 88/192 (45%)
 Frame = +1

Query: 22   LFIKLDFLKAYDSVEWNFLFAVLKRFGLGDMMIRHIHILLNGASSCVAINGLISPPFQV* 201
            + +KLDF KAYDSV WNFL   L +          I   +  AS+ + +NG  +PPF++ 
Sbjct: 569  ILLKLDFHKAYDSVSWNFLQWTLDQMNFPVKWCEWIKTCVTSASASILVNGSPTPPFKLH 628

Query: 202  HSVRQGCPLSPYLFLMVADSLTQMVKCYNRMGRIIGIQLPLDHEQFIQQSYVDDNFLVIR 381
              +RQG PLSP+LF++V + L+QM+     +    GI       +     Y DD  +   
Sbjct: 629  RGLRQGDPLSPFLFVLVGEVLSQMISKATSLQLWRGIPACSRGSEITHLQYADDTLMFCE 688

Query: 382  EQEQNLQNCMELLSIFGQAFDVLVNNSKSGLFRPACNGSVPAWLSRWPGHLIENGSYVKI 561
                +L+N  + L IF     + VN  KS L       S   W+         N    KI
Sbjct: 689  ANTNSLKNIQKTLIIFQLVSGLQVNFHKSSLMGLNVTSS---WIQE-----AANSLMCKI 740

Query: 562  LGIPFNFGSLKL 597
              IPF++  L +
Sbjct: 741  GTIPFSYLGLPI 752


>ref|XP_002443403.1| hypothetical protein SORBIDRAFT_08g018960 [Sorghum bicolor]
           gi|241944096|gb|EES17241.1| hypothetical protein
           SORBIDRAFT_08g018960 [Sorghum bicolor]
          Length = 538

 Score = 89.7 bits (221), Expect = 5e-16
 Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 2/196 (1%)
 Frame = +1

Query: 22  LFIKLDFLKAYDSVEWNFLFAVLKRFGLGDMMIRHIHILLNGASSCVAINGLISPPFQV* 201
           +  K+DF KAYD V W+FL  +L+  G      R I  +++G S  + +N  + P FQ  
Sbjct: 22  VIFKIDFEKAYDKVRWSFLQQMLRMKGFSPKWCRWIETIVSGGSVGIKVNDDVEPYFQTK 81

Query: 202 HSVRQGCPLSPYLFLMVADSLTQMVKCYNRMGRIIGIQLPLDHEQFIQQSYVDDNFLVIR 381
             +RQG P+SP LF +VAD L  ++      G+I G+   L  +      Y DD  + I 
Sbjct: 82  QGLRQGDPMSPILFNIVADMLALLINRAKDDGQIRGVVPHLVDDGLSILQYADDTIIFID 141

Query: 382 EQEQNLQNCMELLSIFGQAFDVLVNNSKSGLFRPACNGSVPAWLSRWPGHLIEN-GSYV- 555
              +  QN   LL  F Q   + +N  KS +F   C G+     S +      N G Y+ 
Sbjct: 142 HDPEQAQNLKLLLCAFEQLSGLKINFHKSEIF---CYGATKEMESYYTSLFGCNAGEYLF 198

Query: 556 KILGIPFNFGSLKLNS 603
           + LGIP +   L LNS
Sbjct: 199 RYLGIPMHHRQL-LNS 213


>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score = 89.0 bits (219), Expect = 9e-16
 Identities = 59/155 (38%), Positives = 81/155 (52%), Gaps = 5/155 (3%)
 Frame = +1

Query: 28   IKLDFLKAYDSVEWNFLFAVLKRFGLGDMMIRHIHILLNGASSCVAINGLISPPFQV*HS 207
            +KLD  KAYD VEWNFL AVL++ G  D  I  +   +  +S  V ING   P F     
Sbjct: 1182 LKLDMNKAYDRVEWNFLEAVLRKMGFVDSWIGLVMSCVTTSSLSVLINGKPGPSFLPSRG 1241

Query: 208  VRQGCPLSPYLFLMVADSLTQMVK--CYNRMGRIIGI---QLPLDHEQFIQQSYVDDNFL 372
            +RQG PLSP+LFL V D L++M+   C + +   + I    LP+ H  F      DD+  
Sbjct: 1242 LRQGDPLSPFLFLFVNDVLSRMINKMCQDSLLTPVTIGPNNLPVSHLFF-----ADDSLF 1296

Query: 373  VIREQEQNLQNCMELLSIFGQAFDVLVNNSKSGLF 477
             +R   QN +   +LL  +  A   L+N  KS +F
Sbjct: 1297 FLRATLQNCETLSDLLHTYCIASGQLINVEKSSIF 1331


>ref|XP_002443080.1| hypothetical protein SORBIDRAFT_08g007680 [Sorghum bicolor]
           gi|241943773|gb|EES16918.1| hypothetical protein
           SORBIDRAFT_08g007680 [Sorghum bicolor]
          Length = 649

 Score = 89.0 bits (219), Expect = 9e-16
 Identities = 45/150 (30%), Positives = 79/150 (52%)
 Frame = +1

Query: 28  IKLDFLKAYDSVEWNFLFAVLKRFGLGDMMIRHIHILLNGASSCVAINGLISPPFQV*HS 207
           IKLD  KAYD VEW +L  ++ + G  +  +R I   +   S  + +NG+ +  F+    
Sbjct: 133 IKLDMAKAYDPVEWEYLQGIMLKLGFHEAFVRMIMKCVTTVSFSIRVNGVPTQSFRPTRG 192

Query: 208 VRQGCPLSPYLFLMVADSLTQMVKCYNRMGRIIGIQLPLDHEQFIQQSYVDDNFLVIREQ 387
           +RQG P+SPYLFL+ ++ L+ ++K    M    G+++ +         + DD+ +     
Sbjct: 193 IRQGDPISPYLFLLCSEGLSCLLKSIGPMHLARGVRVGIHSPWISHLLFADDSIVFSEAS 252

Query: 388 EQNLQNCMELLSIFGQAFDVLVNNSKSGLF 477
           ++  +  ME+L I+ +    LVN  KS +F
Sbjct: 253 QRGAERLMEILDIYNRGSGQLVNREKSTVF 282


>gb|AAX95233.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1018

 Score = 88.6 bits (218), Expect = 1e-15
 Identities = 59/198 (29%), Positives = 102/198 (51%), Gaps = 1/198 (0%)
 Frame = +1

Query: 4    KTQQHPLFIKLDFLKAYDSVEWNFLFAVLKRFGLGDMMIRHIHILLNGASSCVAINGLIS 183
            +T++  LFIK+D  KA+D+V W +L  VL++FG G   +  I  LL  +SS + +NG   
Sbjct: 562  RTKKTSLFIKIDIAKAFDTVCWPYLLEVLRQFGFGIRWLNWISNLLATSSSQMLLNGSSG 621

Query: 184  PPFQV*HSVRQGCPLSPYLFLMVADSLTQMVKCYNRMGRIIGIQLPLDHEQFIQQSYVDD 363
                    +RQG PLSP LF++  +   +++K       +  +    D  +F    YVDD
Sbjct: 622  QSINHVRGLRQGDPLSPMLFILAMEPFHRIIKAVENASLLFPMGGSFD--RFRCSLYVDD 679

Query: 364  NFLVIREQEQNLQNCMELLSIFGQAFDVLVNNSKSGLFRPAC-NGSVPAWLSRWPGHLIE 540
              + ++ Q  +L   M LL+ F Q   +  N SK+ ++   C N ++ + L+ +PG + +
Sbjct: 680  VAVFVKPQASDLSVLMRLLTFFAQTSGLHTNISKTEIYPIRCENINLVSLLANFPGMVKQ 739

Query: 541  NGSYVKILGIPFNFGSLK 594
                 + LG+P +   L+
Sbjct: 740  --FPCRYLGLPLHIRKLR 755


>gb|AAX95130.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group] gi|108864081|gb|ABG22397.1|
            retrotransposon protein, putative, unclassified [Oryza
            sativa Japonica Group]
          Length = 930

 Score = 88.6 bits (218), Expect = 1e-15
 Identities = 59/198 (29%), Positives = 102/198 (51%), Gaps = 1/198 (0%)
 Frame = +1

Query: 4    KTQQHPLFIKLDFLKAYDSVEWNFLFAVLKRFGLGDMMIRHIHILLNGASSCVAINGLIS 183
            +T++  LFIK+D  KA+D+V W +L  VL++FG G   +  I  LL  +SS + +NG   
Sbjct: 474  RTKKTSLFIKIDIAKAFDTVCWPYLLEVLRQFGFGIRWLNWISNLLATSSSQMLLNGSSG 533

Query: 184  PPFQV*HSVRQGCPLSPYLFLMVADSLTQMVKCYNRMGRIIGIQLPLDHEQFIQQSYVDD 363
                    +RQG PLSP LF++  +   +++K       +  +    D  +F    YVDD
Sbjct: 534  QSINHVRGLRQGDPLSPMLFILAMEPFHRIIKAVENASLLFPMGGSFD--RFRCSLYVDD 591

Query: 364  NFLVIREQEQNLQNCMELLSIFGQAFDVLVNNSKSGLFRPAC-NGSVPAWLSRWPGHLIE 540
              + ++ Q  +L   M LL+ F Q   +  N SK+ ++   C N ++ + L+ +PG + +
Sbjct: 592  VAVFVKPQASDLSVLMRLLTFFAQTSGLHTNISKTEIYPIRCENINLVSLLANFPGMVKQ 651

Query: 541  NGSYVKILGIPFNFGSLK 594
                 + LG+P +   L+
Sbjct: 652  --FPCRYLGLPLHIRKLR 667


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 88.2 bits (217), Expect = 2e-15
 Identities = 59/198 (29%), Positives = 92/198 (46%), Gaps = 1/198 (0%)
 Frame = +1

Query: 4    KTQQHPLFIKLDFLKAYDSVEWNFLFAVLKRFGLGDMMIRHIHILLNGASSCVAINGLIS 183
            +  Q  + +K D  KAYD VEWNFL   ++ FG  +  I+ I   +   +  V +NG+  
Sbjct: 947  RVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPH 1006

Query: 184  PPFQV*HSVRQGCPLSPYLFLMVADSLTQMVKCYNRMGRIIGIQLPLDHEQFIQQSYVDD 363
               Q    +RQG PLSPYLF++ AD L  ++K     G I GI++           + DD
Sbjct: 1007 GTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADD 1066

Query: 364  NFLVIREQEQNLQNCMELLSIFGQAFDVLVNNSKSGL-FRPACNGSVPAWLSRWPGHLIE 540
            +    +   +N Q   ++  ++       +N SKS + F    +G+    L    G +  
Sbjct: 1067 SLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILG-IQS 1125

Query: 541  NGSYVKILGIPFNFGSLK 594
            +G   K LG+P  FG  K
Sbjct: 1126 HGGGGKYLGLPEQFGRKK 1143


>ref|XP_003571395.1| PREDICTED: uncharacterized protein LOC100824808 [Brachypodium
            distachyon]
          Length = 975

 Score = 88.2 bits (217), Expect = 2e-15
 Identities = 63/198 (31%), Positives = 89/198 (44%), Gaps = 8/198 (4%)
 Frame = +1

Query: 22   LFIKLDFLKAYDSVEWNFLFAVLKRFGLGDMMIRHIHILLNGASSCVAINGLISPPFQV* 201
            LF+KLD  KA+DSV+W FL  VL+  G G      I +    ASS V +NG    PF   
Sbjct: 497  LFLKLDISKAFDSVDWAFLLEVLEHLGFGQRWRDWICLSFASASSRVLLNGCPGTPFLHR 556

Query: 202  HSVRQGCPLSPYLFLMVADSLTQMVKCYNRMGRIIGIQLPLDHEQFIQQSYVDDNFLVIR 381
              +RQG PLSP LF+   D L  ++     +G +  +  P    +     Y DD  +   
Sbjct: 557  RGLRQGDPLSPMLFIFAIDPLQVILHRAEEVGLLQPVGAPPIRCRI--SLYADDASIFAN 614

Query: 382  EQEQNLQNCMELLSIFGQAFDVLVNNSKSGLFRPACNG--------SVPAWLSRWPGHLI 537
              ++ +     +L  FG A  ++ N SKS  F   C G          PA ++ +PG   
Sbjct: 615  PLKEEIATISAILQRFGDASGLITNVSKSEAFPIRCEGVDLAHVLEDFPATIATFPG--- 671

Query: 538  ENGSYVKILGIPFNFGSL 591
                  K LG+P +F  L
Sbjct: 672  ------KYLGLPLHFRKL 683