BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00025107
         (624 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOX93806.1| Tetratricopeptide repeat (TPR)-like superfamily p...    60   7e-07
ref|XP_002301807.2| hypothetical protein POPTR_0002s24950g [Popu...    59   1e-06
ref|XP_004293124.1| PREDICTED: pentatricopeptide repeat-containi...    59   1e-06
ref|XP_004144398.1| PREDICTED: pentatricopeptide repeat-containi...    57   3e-06
ref|XP_002534359.1| pentatricopeptide repeat-containing protein,...    57   3e-06

>gb|EOX93806.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma
           cacao]
          Length = 382

 Score = 59.7 bits (143), Expect = 7e-07
 Identities = 32/84 (38%), Positives = 46/84 (54%)
 Frame = -2

Query: 326 PRDTVELARKFELCIQKLPENFTAENIDTLIQEQTNVDLAHDIFNWSREQMRFKHKHTSY 147
           PR    L  +FE  IQKL   FT  ++D  ++ Q + DLA DIF W+  Q  +KH   +Y
Sbjct: 57  PRTRTPLETQFETWIQKLKPGFTTADVDAALRAQPDADLALDIFRWTALQRGYKHTDATY 116

Query: 146 IHILGLLWEVGRRDPALKLMKDVI 75
           + I+ LL    R   A  L+++VI
Sbjct: 117 LTIIKLLISAKRYRHAETLIEEVI 140


>ref|XP_002301807.2| hypothetical protein POPTR_0002s24950g [Populus trichocarpa]
           gi|550345772|gb|EEE81080.2| hypothetical protein
           POPTR_0002s24950g [Populus trichocarpa]
          Length = 387

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 29/78 (37%), Positives = 46/78 (58%)
 Frame = -2

Query: 308 LARKFELCIQKLPENFTAENIDTLIQEQTNVDLAHDIFNWSREQMRFKHKHTSYIHILGL 129
           L  +FE   Q L   FT  ++DT I+ Q++ DLA DIF W+ +Q  +KH H +Y+ ++ +
Sbjct: 66  LETQFETWTQNLKPGFTPTDVDTAIRAQSDPDLALDIFRWTAQQRNYKHNHITYLTVIKI 125

Query: 128 LWEVGRRDPALKLMKDVI 75
           L    R   A  L+++VI
Sbjct: 126 LISGRRYRQAETLIEEVI 143


>ref|XP_004293124.1| PREDICTED: pentatricopeptide repeat-containing protein At3g25210,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 370

 Score = 58.5 bits (140), Expect = 1e-06
 Identities = 32/104 (30%), Positives = 56/104 (53%)
 Frame = -2

Query: 386 PSLGMTKFETRYEKEPIKFAPRDTVELARKFELCIQKLPENFTAENIDTLIQEQTNVDLA 207
           PSL      +     P  F  R  +E  ++FE  I KL   F   ++D  ++ Q++ DLA
Sbjct: 25  PSLYHRLLSSSARNPPDSFRTRTPLE--KQFETWIHKLKPGFGPPDVDEALKAQSDPDLA 82

Query: 206 HDIFNWSREQMRFKHKHTSYIHILGLLWEVGRRDPALKLMKDVI 75
            DIF W+ +Q  +KH H++Y+ ++ +L +  R   A  L+++V+
Sbjct: 83  LDIFRWTAQQRNYKHSHSTYLTMIKILIDGRRYRHAETLLEEVV 126


>ref|XP_004144398.1| PREDICTED: pentatricopeptide repeat-containing protein At3g25210,
           mitochondrial-like [Cucumis sativus]
           gi|449516331|ref|XP_004165200.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g25210,
           mitochondrial-like [Cucumis sativus]
          Length = 393

 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 41/145 (28%), Positives = 72/145 (49%)
 Frame = -2

Query: 509 SPFQSSKLANPSGFPSYPNNNSNSRILTPRAWTMQRRRKHAPSLGMTKFETRYEKEPIKF 330
           SPFQS  L NP   PS+ ++     +  P +  +  +     +L + K  T+        
Sbjct: 21  SPFQS--LLNPI-LPSHLHHRFLCSLSPPSSALLPPQNSDNLNLPIPKVRTQ-------- 69

Query: 329 APRDTVELARKFELCIQKLPENFTAENIDTLIQEQTNVDLAHDIFNWSREQMRFKHKHTS 150
                  L ++FE  +QKL   F+  +++  +Q Q++ DLA D+F W+ +Q  +KH H +
Sbjct: 70  -----TPLEKQFESWVQKLKPGFSPSDVNEALQAQSDPDLALDLFRWTAQQRGYKHNHLT 124

Query: 149 YIHILGLLWEVGRRDPALKLMKDVI 75
           Y+ I+ +L    R   A  L+++VI
Sbjct: 125 YLTIIKILIYRRRCHLAETLVEEVI 149


>ref|XP_002534359.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223525434|gb|EEF28024.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 382

 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 28/83 (33%), Positives = 47/83 (56%)
 Frame = -2

Query: 323 RDTVELARKFELCIQKLPENFTAENIDTLIQEQTNVDLAHDIFNWSREQMRFKHKHTSYI 144
           R    L  +FE   Q L   FT  ++ T ++ Q++ DLA+DIF W+ +Q  +KH H +Y 
Sbjct: 56  RTRTPLETQFETWTQTLKPGFTPTDVQTALRSQSDPDLAYDIFRWTAQQRNYKHSHLTYF 115

Query: 143 HILGLLWEVGRRDPALKLMKDVI 75
            ++ +L +  R   A  L+++VI
Sbjct: 116 AMIKILIDGKRYRHAETLVEEVI 138