BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00025072
         (747 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus not...   260   4e-67
gb|EOY28254.1| DNA-directed RNA polymerase family protein isofor...   260   4e-67
gb|EOY28253.1| DNA-directed RNA polymerase family protein isofor...   260   4e-67
gb|AAY85235.1| RNA polymerase II second largest subunit [Tetrace...   259   7e-67
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta...   259   9e-67
gb|AAY89340.1| RNA polymerase II second largest subunit [Berberi...   259   9e-67
ref|XP_004982317.1| PREDICTED: DNA-directed RNA polymerase II su...   258   1e-66
ref|XP_004982316.1| PREDICTED: DNA-directed RNA polymerase II su...   258   1e-66
tpg|DAA50302.1| TPA: hypothetical protein ZEAMMB73_468424, parti...   258   1e-66
ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II su...   258   1e-66
gb|AAZ08459.1| RNA polymerase II second largest subunit [Astilbe...   258   1e-66
gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriode...   258   1e-66
gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanu...   258   1e-66
gb|AAY85216.1| RNA polymerase II second largest subunit [Hibbert...   258   1e-66
gb|AAY85204.1| RNA polymerase II second largest subunit [Dilleni...   258   1e-66
gb|AAY85223.1| RNA polymerase II second largest subunit [Nelumbo...   258   1e-66
ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II su...   257   3e-66
ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II su...   257   3e-66
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode...   257   3e-66
gb|AAY85208.1| RNA polymerase II second largest subunit [Euptele...   257   3e-66

>gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
          Length = 1193

 Score =  260 bits (664), Expect = 4e-67
 Identities = 150/258 (58%), Positives = 163/258 (63%), Gaps = 10/258 (3%)
 Frame = -3

Query: 745  SSGLKYSLATGNWGQENVAGIRSGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR*L 566
            +SGLKYSLATGNWGQ N AG R+GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR L
Sbjct: 446  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 505

Query: 565  HNSQ*GMMCPTETPEG*AYGLVKNLALMVYITVGSSASPXXXXXXXXXXXXXXEVSPAVI 386
            HNSQ GMMCP ETPEG A GLVKNLALMVYITVGS+A P              E+SPAVI
Sbjct: 506  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 565

Query: 385  LTVTKVFVNGCWVGIHQNSDQLVNTLRELR*KVDVNPEVGIVRDILLKELRI-------- 230
               TK+FVNGCWVGIH++ D LV TLR LR +VDVN EVG+VRDI LKELRI        
Sbjct: 566  PQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 625

Query: 229  --XXXXXXXXXLIKKAHIKMLQERESIIST*SAHXXXXXXXXXXXXXINYDSLQATTSIK 56
                       LIKK  I+ LQ+RE+                                  
Sbjct: 626  RPLFIVEKQRLLIKKRDIRALQQRET---------------------------------- 651

Query: 55   DDEPFGWHSLVANGCIEY 2
              E  GWH LV+NG IEY
Sbjct: 652  -PEEAGWHDLVSNGFIEY 668


>gb|EOY28254.1| DNA-directed RNA polymerase family protein isoform 2 [Theobroma
           cacao]
          Length = 809

 Score =  260 bits (664), Expect = 4e-67
 Identities = 151/258 (58%), Positives = 161/258 (62%), Gaps = 10/258 (3%)
 Frame = -3

Query: 745 SSGLKYSLATGNWGQENVAGIRSGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR*L 566
           +SGLKYSLATGNWGQ N AG R+GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR L
Sbjct: 95  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 154

Query: 565 HNSQ*GMMCPTETPEG*AYGLVKNLALMVYITVGSSASPXXXXXXXXXXXXXXEVSPAVI 386
           HNSQ GMMCP ETPEG A GLVKNLALMVYITVGS+A P              E+SPAVI
Sbjct: 155 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 214

Query: 385 LTVTKVFVNGCWVGIHQNSDQLVNTLRELR*KVDVNPEVGIVRDILLKELRI-------- 230
              TK+FVNGCWVG+H+N D LV TLR LR +VDVN EVG+VRDI LKELRI        
Sbjct: 215 PQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 274

Query: 229 --XXXXXXXXXLIKKAHIKMLQERESIIST*SAHXXXXXXXXXXXXXINYDSLQATTSIK 56
                      LIKK  I  LQ+RES                                  
Sbjct: 275 RPLFIVEKQRLLIKKKDIHALQQRES---------------------------------- 300

Query: 55  DDEPFGWHSLVANGCIEY 2
             E  GWH LVA G IEY
Sbjct: 301 -PEDGGWHDLVAKGFIEY 317


>gb|EOY28253.1| DNA-directed RNA polymerase family protein isoform 1 [Theobroma
            cacao]
          Length = 1189

 Score =  260 bits (664), Expect = 4e-67
 Identities = 151/258 (58%), Positives = 161/258 (62%), Gaps = 10/258 (3%)
 Frame = -3

Query: 745  SSGLKYSLATGNWGQENVAGIRSGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR*L 566
            +SGLKYSLATGNWGQ N AG R+GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR L
Sbjct: 445  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 504

Query: 565  HNSQ*GMMCPTETPEG*AYGLVKNLALMVYITVGSSASPXXXXXXXXXXXXXXEVSPAVI 386
            HNSQ GMMCP ETPEG A GLVKNLALMVYITVGS+A P              E+SPAVI
Sbjct: 505  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 564

Query: 385  LTVTKVFVNGCWVGIHQNSDQLVNTLRELR*KVDVNPEVGIVRDILLKELRI-------- 230
               TK+FVNGCWVG+H+N D LV TLR LR +VDVN EVG+VRDI LKELRI        
Sbjct: 565  PQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 624

Query: 229  --XXXXXXXXXLIKKAHIKMLQERESIIST*SAHXXXXXXXXXXXXXINYDSLQATTSIK 56
                       LIKK  I  LQ+RES                                  
Sbjct: 625  RPLFIVEKQRLLIKKKDIHALQQRES---------------------------------- 650

Query: 55   DDEPFGWHSLVANGCIEY 2
              E  GWH LVA G IEY
Sbjct: 651  -PEDGGWHDLVAKGFIEY 667


>gb|AAY85235.1| RNA polymerase II second largest subunit [Tetracentron sinense]
          Length = 951

 Score =  259 bits (662), Expect = 7e-67
 Identities = 149/258 (57%), Positives = 163/258 (63%), Gaps = 10/258 (3%)
 Frame = -3

Query: 745  SSGLKYSLATGNWGQENVAGIRSGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR*L 566
            +SGLKYSLATGNWGQ N AG R+GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR L
Sbjct: 341  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 400

Query: 565  HNSQ*GMMCPTETPEG*AYGLVKNLALMVYITVGSSASPXXXXXXXXXXXXXXEVSPAVI 386
            HNS  GMMCP ETPEG A GLVKNLALMVYITVGS+A+P              E+SPAVI
Sbjct: 401  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI 460

Query: 385  LTVTKVFVNGCWVGIHQNSDQLVNTLRELR*KVDVNPEVGIVRDILLKELRI-------- 230
               TK+FVNGCWVGIH+N D LV TLR+LR +VDVN EVG++RDI LKELR+        
Sbjct: 461  PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCS 520

Query: 229  --XXXXXXXXXLIKKAHIKMLQERESIIST*SAHXXXXXXXXXXXXXINYDSLQATTSIK 56
                       LIKK  I+ LQ+RES                                  
Sbjct: 521  RPLFIVEKQRLLIKKKDIRALQQRES---------------------------------- 546

Query: 55   DDEPFGWHSLVANGCIEY 2
              E  GWH LVA G IEY
Sbjct: 547  -PEEGGWHDLVAKGYIEY 563


>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 1194

 Score =  259 bits (661), Expect = 9e-67
 Identities = 151/258 (58%), Positives = 161/258 (62%), Gaps = 10/258 (3%)
 Frame = -3

Query: 745  SSGLKYSLATGNWGQENVAGIRSGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR*L 566
            +SGLKYSLATGNWGQ N AG R+GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR L
Sbjct: 448  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 507

Query: 565  HNSQ*GMMCPTETPEG*AYGLVKNLALMVYITVGSSASPXXXXXXXXXXXXXXEVSPAVI 386
            HNSQ GMMCP ETPEG A GLVKNLALMVYITVGS+A P              E+SPAVI
Sbjct: 508  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 567

Query: 385  LTVTKVFVNGCWVGIHQNSDQLVNTLRELR*KVDVNPEVGIVRDILLKELRI-------- 230
               TK+FVNGCWVGIH++ D LV TLR LR +VDVN EVG+VRDI LKELRI        
Sbjct: 568  PQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 627

Query: 229  --XXXXXXXXXLIKKAHIKMLQERESIIST*SAHXXXXXXXXXXXXXINYDSLQATTSIK 56
                       LIKK  I  LQ+RES                                  
Sbjct: 628  RPLFIVEKQRLLIKKKDIHALQQRES---------------------------------- 653

Query: 55   DDEPFGWHSLVANGCIEY 2
              E  GWH LVA G IEY
Sbjct: 654  -SEEGGWHDLVAKGFIEY 670


>gb|AAY89340.1| RNA polymerase II second largest subunit [Berberidopsis beckleri]
          Length = 873

 Score =  259 bits (661), Expect = 9e-67
 Identities = 149/258 (57%), Positives = 163/258 (63%), Gaps = 10/258 (3%)
 Frame = -3

Query: 745  SSGLKYSLATGNWGQENVAGIRSGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR*L 566
            +SGLKYSLATGNWGQ N AG R+GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR L
Sbjct: 341  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 400

Query: 565  HNSQ*GMMCPTETPEG*AYGLVKNLALMVYITVGSSASPXXXXXXXXXXXXXXEVSPAVI 386
            HNS  GMMCP ETPEG A GLVKNLALMVYITVGS+A+P              E+SPAVI
Sbjct: 401  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI 460

Query: 385  LTVTKVFVNGCWVGIHQNSDQLVNTLRELR*KVDVNPEVGIVRDILLKELRI-------- 230
               TK+FVNGCWVGIH+N D LV TLR+LR +VDVN EVG++RDI LKELR+        
Sbjct: 461  PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCS 520

Query: 229  --XXXXXXXXXLIKKAHIKMLQERESIIST*SAHXXXXXXXXXXXXXINYDSLQATTSIK 56
                       LIKK  I+ LQ+RES                                  
Sbjct: 521  RPLFIVEKQRLLIKKKDIQALQQRES---------------------------------- 546

Query: 55   DDEPFGWHSLVANGCIEY 2
              E  GWH LVA G IEY
Sbjct: 547  -HEDGGWHDLVAKGFIEY 563


>ref|XP_004982317.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like isoform
            X2 [Setaria italica]
          Length = 1190

 Score =  258 bits (659), Expect = 1e-66
 Identities = 149/258 (57%), Positives = 164/258 (63%), Gaps = 10/258 (3%)
 Frame = -3

Query: 745  SSGLKYSLATGNWGQENVAGIRSGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR*L 566
            +SGLKYSLATGNWGQ N AG R+GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR L
Sbjct: 447  TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 506

Query: 565  HNSQ*GMMCPTETPEG*AYGLVKNLALMVYITVGSSASPXXXXXXXXXXXXXXEVSPAVI 386
            HNS  GMMCP ETPEG A GLVKNLALMVYITVGS+A+P              E+SPAVI
Sbjct: 507  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVI 566

Query: 385  LTVTKVFVNGCWVGIHQNSDQLVNTLRELR*KVDVNPEVGIVRDILLKELRI-------- 230
                K+FVNGCWVGIH+N D LV TLR LR ++DVN EVG+VRDI LKELR+        
Sbjct: 567  PQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCS 626

Query: 229  --XXXXXXXXXLIKKAHIKMLQERESIIST*SAHXXXXXXXXXXXXXINYDSLQATTSIK 56
                       LIKKAHI+ LQ+RE+                                  
Sbjct: 627  RPLFIVENQRLLIKKAHIRALQQRET---------------------------------- 652

Query: 55   DDEPFGWHSLVANGCIEY 2
             DE  GWH LV+ G IEY
Sbjct: 653  PDE--GWHELVSKGYIEY 668


>ref|XP_004982316.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like isoform
            X1 [Setaria italica]
          Length = 1226

 Score =  258 bits (659), Expect = 1e-66
 Identities = 149/258 (57%), Positives = 164/258 (63%), Gaps = 10/258 (3%)
 Frame = -3

Query: 745  SSGLKYSLATGNWGQENVAGIRSGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR*L 566
            +SGLKYSLATGNWGQ N AG R+GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR L
Sbjct: 483  TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 542

Query: 565  HNSQ*GMMCPTETPEG*AYGLVKNLALMVYITVGSSASPXXXXXXXXXXXXXXEVSPAVI 386
            HNS  GMMCP ETPEG A GLVKNLALMVYITVGS+A+P              E+SPAVI
Sbjct: 543  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVI 602

Query: 385  LTVTKVFVNGCWVGIHQNSDQLVNTLRELR*KVDVNPEVGIVRDILLKELRI-------- 230
                K+FVNGCWVGIH+N D LV TLR LR ++DVN EVG+VRDI LKELR+        
Sbjct: 603  PQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCS 662

Query: 229  --XXXXXXXXXLIKKAHIKMLQERESIIST*SAHXXXXXXXXXXXXXINYDSLQATTSIK 56
                       LIKKAHI+ LQ+RE+                                  
Sbjct: 663  RPLFIVENQRLLIKKAHIRALQQRET---------------------------------- 688

Query: 55   DDEPFGWHSLVANGCIEY 2
             DE  GWH LV+ G IEY
Sbjct: 689  PDE--GWHELVSKGYIEY 704


>tpg|DAA50302.1| TPA: hypothetical protein ZEAMMB73_468424, partial [Zea mays]
          Length = 762

 Score =  258 bits (659), Expect = 1e-66
 Identities = 149/258 (57%), Positives = 164/258 (63%), Gaps = 10/258 (3%)
 Frame = -3

Query: 745  SSGLKYSLATGNWGQENVAGIRSGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR*L 566
            +SGLKYSLATGNWGQ N AG R+GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR L
Sbjct: 484  TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 543

Query: 565  HNSQ*GMMCPTETPEG*AYGLVKNLALMVYITVGSSASPXXXXXXXXXXXXXXEVSPAVI 386
            HNS  GMMCP ETPEG A GLVKNLALMVYITVGS+A+P              E+SPAVI
Sbjct: 544  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVI 603

Query: 385  LTVTKVFVNGCWVGIHQNSDQLVNTLRELR*KVDVNPEVGIVRDILLKELRI-------- 230
                K+FVNGCWVGIH+N D LV TLR LR ++DVN EVG+VRDI LKELR+        
Sbjct: 604  PQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCS 663

Query: 229  --XXXXXXXXXLIKKAHIKMLQERESIIST*SAHXXXXXXXXXXXXXINYDSLQATTSIK 56
                       LIKKAHI+ LQ+RE+                                  
Sbjct: 664  RPLFIVEGQRLLIKKAHIRALQQRET---------------------------------- 689

Query: 55   DDEPFGWHSLVANGCIEY 2
             DE  GWH LV+ G IEY
Sbjct: 690  PDE--GWHELVSKGYIEY 705


>ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1193

 Score =  258 bits (659), Expect = 1e-66
 Identities = 149/258 (57%), Positives = 163/258 (63%), Gaps = 10/258 (3%)
 Frame = -3

Query: 745  SSGLKYSLATGNWGQENVAGIRSGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR*L 566
            +SGLKYSLATGNWGQ N AG R+GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR L
Sbjct: 448  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 507

Query: 565  HNSQ*GMMCPTETPEG*AYGLVKNLALMVYITVGSSASPXXXXXXXXXXXXXXEVSPAVI 386
            HNSQ GMMCP ETPEG A GLVKNLALMVYITVGS+A P              E+SPAVI
Sbjct: 508  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 567

Query: 385  LTVTKVFVNGCWVGIHQNSDQLVNTLRELR*KVDVNPEVGIVRDILLKELRI-------- 230
               TK+FVNGCW+GIH++ D LV TLR+LR +VDVN EVG+VRDI+LKELRI        
Sbjct: 568  PQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIILKELRIYTDYGRCS 627

Query: 229  --XXXXXXXXXLIKKAHIKMLQERESIIST*SAHXXXXXXXXXXXXXINYDSLQATTSIK 56
                       LIKK  I  LQ+RES                                  
Sbjct: 628  RPLFIVDKQRLLIKKKDIHALQQRES---------------------------------- 653

Query: 55   DDEPFGWHSLVANGCIEY 2
              E  GWH LV+ G IEY
Sbjct: 654  -PEDGGWHDLVSKGFIEY 670


>gb|AAZ08459.1| RNA polymerase II second largest subunit [Astilbe sp. Yoshikawa s.n.]
          Length = 951

 Score =  258 bits (659), Expect = 1e-66
 Identities = 150/258 (58%), Positives = 162/258 (62%), Gaps = 10/258 (3%)
 Frame = -3

Query: 745  SSGLKYSLATGNWGQENVAGIRSGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR*L 566
            +SGLKYSLATGNWGQ N AG R+GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR L
Sbjct: 341  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 400

Query: 565  HNSQ*GMMCPTETPEG*AYGLVKNLALMVYITVGSSASPXXXXXXXXXXXXXXEVSPAVI 386
            HNSQ GMMCP ETPEG A GLVKNLALMVYITVGS+A P              E+SPAVI
Sbjct: 401  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 460

Query: 385  LTVTKVFVNGCWVGIHQNSDQLVNTLRELR*KVDVNPEVGIVRDILLKELRI-------- 230
               TK+FVNGCWVGIH++ D LV TLR LR +VDVN EVG+VRDI LKELRI        
Sbjct: 461  PEATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 520

Query: 229  --XXXXXXXXXLIKKAHIKMLQERESIIST*SAHXXXXXXXXXXXXXINYDSLQATTSIK 56
                       LIKK  I+ LQ+RE+                                  
Sbjct: 521  RPLFIVEKQRLLIKKKDIQALQQRET---------------------------------- 546

Query: 55   DDEPFGWHSLVANGCIEY 2
              E  GWH LVA G IEY
Sbjct: 547  -PEDGGWHDLVAKGFIEY 563


>gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriodendron tulipifera]
          Length = 942

 Score =  258 bits (659), Expect = 1e-66
 Identities = 148/258 (57%), Positives = 165/258 (63%), Gaps = 10/258 (3%)
 Frame = -3

Query: 745 SSGLKYSLATGNWGQENVAGIRSGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR*L 566
           +SGLKYSLATGNWGQ N AG R+GVSQVLNRLT+ASTLSHLRRLNSPIGREGKLAKPR L
Sbjct: 333 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQL 392

Query: 565 HNSQ*GMMCPTETPEG*AYGLVKNLALMVYITVGSSASPXXXXXXXXXXXXXXEVSPAVI 386
           HNS  GMMCP ETPEG A GLVKNLALMVYITVGS+A+P              E+SPAVI
Sbjct: 393 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI 452

Query: 385 LTVTKVFVNGCWVGIHQNSDQLVNTLRELR*KVDVNPEVGIVRDILLKELRI-------- 230
              TK+FVNGCWVGIH+N + LV TLR+LR +VDVN EVG++RDI LKELR+        
Sbjct: 453 PQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCS 512

Query: 229 --XXXXXXXXXLIKKAHIKMLQERESIIST*SAHXXXXXXXXXXXXXINYDSLQATTSIK 56
                      LIKK HI+ LQ+RE+                                  
Sbjct: 513 RPLFIVEKQRLLIKKKHIRSLQQRET---------------------------------- 538

Query: 55  DDEPFGWHSLVANGCIEY 2
            DE  GWH LVA G IEY
Sbjct: 539 QDE--GWHDLVAKGFIEY 554


>gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
          Length = 923

 Score =  258 bits (659), Expect = 1e-66
 Identities = 148/258 (57%), Positives = 164/258 (63%), Gaps = 10/258 (3%)
 Frame = -3

Query: 745 SSGLKYSLATGNWGQENVAGIRSGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR*L 566
           +SGLKYSLATGNWGQ N AG R+GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR L
Sbjct: 313 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 372

Query: 565 HNSQ*GMMCPTETPEG*AYGLVKNLALMVYITVGSSASPXXXXXXXXXXXXXXEVSPAVI 386
           HNS  GMMCP ETPEG A GLVKNLALMVYITVGS+A+P              E+SPAVI
Sbjct: 373 HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI 432

Query: 385 LTVTKVFVNGCWVGIHQNSDQLVNTLRELR*KVDVNPEVGIVRDILLKELRI-------- 230
              TK+FVNGCWVGIH+N + LVNTLR+LR +VDVN EVG++RDI LKELR+        
Sbjct: 433 PQATKIFVNGCWVGIHRNPELLVNTLRKLRRQVDVNTEVGVIRDIHLKELRLYTDYGRCS 492

Query: 229 --XXXXXXXXXLIKKAHIKMLQERESIIST*SAHXXXXXXXXXXXXXINYDSLQATTSIK 56
                      LIKK  I+ LQ+RE+                                  
Sbjct: 493 RPLFIVEKQRLLIKKKDIRALQQRET---------------------------------- 518

Query: 55  DDEPFGWHSLVANGCIEY 2
             E  GWH LVA G IEY
Sbjct: 519 -PEDGGWHDLVAKGYIEY 535


>gb|AAY85216.1| RNA polymerase II second largest subunit [Hibbertia scandens]
          Length = 873

 Score =  258 bits (659), Expect = 1e-66
 Identities = 148/258 (57%), Positives = 163/258 (63%), Gaps = 10/258 (3%)
 Frame = -3

Query: 745  SSGLKYSLATGNWGQENVAGIRSGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR*L 566
            +SGLKYSLATGNWGQ N AG R+GVSQVLNRLTY+STLSHLRRLNSPIGREGKLAKPR L
Sbjct: 341  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQL 400

Query: 565  HNSQ*GMMCPTETPEG*AYGLVKNLALMVYITVGSSASPXXXXXXXXXXXXXXEVSPAVI 386
            HNS  GMMCP ETPEG A GLVKNLALMVYITVGS+A+P              E+SPAVI
Sbjct: 401  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI 460

Query: 385  LTVTKVFVNGCWVGIHQNSDQLVNTLRELR*KVDVNPEVGIVRDILLKELRI-------- 230
               TK+FVNGCWVGIH+N D LV TLR+LR +VDVN EVG++RDI LKELR+        
Sbjct: 461  PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCS 520

Query: 229  --XXXXXXXXXLIKKAHIKMLQERESIIST*SAHXXXXXXXXXXXXXINYDSLQATTSIK 56
                       LIKK  I+ LQ+RES                                  
Sbjct: 521  RPLFIVEKQRLLIKKKDIRALQQRES---------------------------------- 546

Query: 55   DDEPFGWHSLVANGCIEY 2
              E  GWH LVA G IEY
Sbjct: 547  -PEDGGWHDLVAKGFIEY 563


>gb|AAY85204.1| RNA polymerase II second largest subunit [Dillenia suffruticosa]
          Length = 868

 Score =  258 bits (659), Expect = 1e-66
 Identities = 148/258 (57%), Positives = 163/258 (63%), Gaps = 10/258 (3%)
 Frame = -3

Query: 745  SSGLKYSLATGNWGQENVAGIRSGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR*L 566
            +SGLKYSLATGNWGQ N AG R+GVSQVLNRLTY+STLSHLRRLNSPIGREGKLAKPR L
Sbjct: 336  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQL 395

Query: 565  HNSQ*GMMCPTETPEG*AYGLVKNLALMVYITVGSSASPXXXXXXXXXXXXXXEVSPAVI 386
            HNS  GMMCP ETPEG A GLVKNLALMVYITVGS+A+P              E+SPAVI
Sbjct: 396  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI 455

Query: 385  LTVTKVFVNGCWVGIHQNSDQLVNTLRELR*KVDVNPEVGIVRDILLKELRI-------- 230
               TK+FVNGCWVGIH+N D LV TLR+LR +VDVN EVG++RDI LKELR+        
Sbjct: 456  PQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCS 515

Query: 229  --XXXXXXXXXLIKKAHIKMLQERESIIST*SAHXXXXXXXXXXXXXINYDSLQATTSIK 56
                       LIKK  I+ LQ+RES                                  
Sbjct: 516  RPLFIVEKQRLLIKKKDIRALQQRES---------------------------------- 541

Query: 55   DDEPFGWHSLVANGCIEY 2
              E  GWH LVA G IEY
Sbjct: 542  -PEEGGWHDLVAKGFIEY 558


>gb|AAY85223.1| RNA polymerase II second largest subunit [Nelumbo nucifera]
          Length = 865

 Score =  258 bits (659), Expect = 1e-66
 Identities = 148/258 (57%), Positives = 163/258 (63%), Gaps = 10/258 (3%)
 Frame = -3

Query: 745  SSGLKYSLATGNWGQENVAGIRSGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR*L 566
            +SGLKYSLATGNWGQ N AG R+GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR L
Sbjct: 333  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 392

Query: 565  HNSQ*GMMCPTETPEG*AYGLVKNLALMVYITVGSSASPXXXXXXXXXXXXXXEVSPAVI 386
            HNS  GMMCP ETPEG A GLVKNLALMVYITVGS+A+P              E+SPAVI
Sbjct: 393  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI 452

Query: 385  LTVTKVFVNGCWVGIHQNSDQLVNTLRELR*KVDVNPEVGIVRDILLKELRI-------- 230
               TK+FVNGCWVGIH+N + LV TLR+LR +VDVN EVG++RDI LKELR+        
Sbjct: 453  PQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCS 512

Query: 229  --XXXXXXXXXLIKKAHIKMLQERESIIST*SAHXXXXXXXXXXXXXINYDSLQATTSIK 56
                       LIKK  I+ LQ+RES                                  
Sbjct: 513  RPLFIVEKQRLLIKKKDIRALQQRES---------------------------------- 538

Query: 55   DDEPFGWHSLVANGCIEY 2
              E  GWH LVA G IEY
Sbjct: 539  -SEEGGWHDLVAKGFIEY 555


>ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Brachypodium distachyon]
          Length = 1228

 Score =  257 bits (657), Expect = 3e-66
 Identities = 149/258 (57%), Positives = 163/258 (63%), Gaps = 10/258 (3%)
 Frame = -3

Query: 745  SSGLKYSLATGNWGQENVAGIRSGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR*L 566
            +SGLKYSLATGNWGQ N AG R+GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR L
Sbjct: 485  TSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 544

Query: 565  HNSQ*GMMCPTETPEG*AYGLVKNLALMVYITVGSSASPXXXXXXXXXXXXXXEVSPAVI 386
            HNS  GMMCP ETPEG A GLVKNLALMVYITVGS+A+P              E+SPAVI
Sbjct: 545  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVI 604

Query: 385  LTVTKVFVNGCWVGIHQNSDQLVNTLRELR*KVDVNPEVGIVRDILLKELRI-------- 230
                K+FVNGCWVGIH+N D LV TLR LR ++DVN EVG+VRDI LKELR+        
Sbjct: 605  PQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCS 664

Query: 229  --XXXXXXXXXLIKKAHIKMLQERESIIST*SAHXXXXXXXXXXXXXINYDSLQATTSIK 56
                       LIKK HI+ LQ+RE+                                  
Sbjct: 665  RPLFIVDGQRLLIKKKHIRALQQRET---------------------------------- 690

Query: 55   DDEPFGWHSLVANGCIEY 2
             DE  GWH LVA G IEY
Sbjct: 691  PDE--GWHDLVAKGFIEY 706


>ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus] gi|449479313|ref|XP_004155566.1| PREDICTED:
            DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus]
          Length = 1199

 Score =  257 bits (656), Expect = 3e-66
 Identities = 150/258 (58%), Positives = 161/258 (62%), Gaps = 10/258 (3%)
 Frame = -3

Query: 745  SSGLKYSLATGNWGQENVAGIRSGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR*L 566
            +SGLKYSLATGNWGQ N AG R+GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR L
Sbjct: 453  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 512

Query: 565  HNSQ*GMMCPTETPEG*AYGLVKNLALMVYITVGSSASPXXXXXXXXXXXXXXEVSPAVI 386
            HNSQ GMMCP ETPEG A GLVKNLALMVYITVGS+A P              E+SPAVI
Sbjct: 513  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 572

Query: 385  LTVTKVFVNGCWVGIHQNSDQLVNTLRELR*KVDVNPEVGIVRDILLKELRI-------- 230
               TK+FVNGCWVGIH++ + LV TLR LR +VDVN EVG+VRDI LKELRI        
Sbjct: 573  PQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 632

Query: 229  --XXXXXXXXXLIKKAHIKMLQERESIIST*SAHXXXXXXXXXXXXXINYDSLQATTSIK 56
                       LIKK  I  LQ+RES                                  
Sbjct: 633  RPLFIVEKQRLLIKKKDIHALQQRES---------------------------------- 658

Query: 55   DDEPFGWHSLVANGCIEY 2
              E  GWH LVA G IEY
Sbjct: 659  -PEDGGWHDLVAKGFIEY 675


>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score =  257 bits (656), Expect = 3e-66
 Identities = 149/258 (57%), Positives = 162/258 (62%), Gaps = 10/258 (3%)
 Frame = -3

Query: 745  SSGLKYSLATGNWGQENVAGIRSGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR*L 566
            +SGLKYSLATGNWGQ N AG R+GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR L
Sbjct: 445  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 504

Query: 565  HNSQ*GMMCPTETPEG*AYGLVKNLALMVYITVGSSASPXXXXXXXXXXXXXXEVSPAVI 386
            HNSQ GMMCP ETPEG A GLVKNLALMVYITVGS+A P              E+SPAVI
Sbjct: 505  HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 564

Query: 385  LTVTKVFVNGCWVGIHQNSDQLVNTLRELR*KVDVNPEVGIVRDILLKELRI-------- 230
               TK+FVNGCWVGIH++ D LV TLR LR +VDVN EVG+VRDI LKELRI        
Sbjct: 565  PQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 624

Query: 229  --XXXXXXXXXLIKKAHIKMLQERESIIST*SAHXXXXXXXXXXXXXINYDSLQATTSIK 56
                       LIK+  I+ LQ+RE+                                  
Sbjct: 625  RPLFIVEKQRLLIKRKDIQALQQRET---------------------------------- 650

Query: 55   DDEPFGWHSLVANGCIEY 2
              E  GWH LVA G IEY
Sbjct: 651  -PEDGGWHDLVAKGFIEY 667


>gb|AAY85208.1| RNA polymerase II second largest subunit [Euptelea polyandra]
          Length = 874

 Score =  257 bits (656), Expect = 3e-66
 Identities = 149/258 (57%), Positives = 164/258 (63%), Gaps = 10/258 (3%)
 Frame = -3

Query: 745  SSGLKYSLATGNWGQENVAGIRSGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR*L 566
            +SGLKYSLATGNWGQ N AG R+GVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR L
Sbjct: 341  TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 400

Query: 565  HNSQ*GMMCPTETPEG*AYGLVKNLALMVYITVGSSASPXXXXXXXXXXXXXXEVSPAVI 386
            HNS  GMMCP ETPEG A GLVKNLALMVYITVGS+A+P              E+SPAVI
Sbjct: 401  HNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVI 460

Query: 385  LTVTKVFVNGCWVGIHQNSDQLVNTLRELR*KVDVNPEVGIVRDILLKELRI-------- 230
               TK+FVNGCWVGIH+N + LV TLR+LR +VDVN EVG++RDI LKELR+        
Sbjct: 461  PQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCS 520

Query: 229  --XXXXXXXXXLIKKAHIKMLQERESIIST*SAHXXXXXXXXXXXXXINYDSLQATTSIK 56
                       LIKK  I+ LQ+RES                                  
Sbjct: 521  RPLFIVEKQRLLIKKKDIRALQQRES---------------------------------P 547

Query: 55   DDEPFGWHSLVANGCIEY 2
            DD   GWH LVA G IEY
Sbjct: 548  DDG--GWHDLVAKGFIEY 563