BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00024428
         (1251 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   142   3e-31
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   142   4e-31
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         142   4e-31
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   142   4e-31
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...   139   2e-30
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ...   139   3e-30
emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group]           136   2e-29
gb|ABA99612.1| retrotransposon protein, putative, unclassified [...   135   5e-29
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group...   134   6e-29
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]   130   9e-28
gb|ABW74566.1| integrase [Boechera divaricarpa]                       129   3e-27
emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]   129   3e-27
emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]   128   4e-27
gb|AAT38786.2| Gag-pol polyprotein, putative [Solanum demissum]       127   1e-26
emb|CBI40240.3| unnamed protein product [Vitis vinifera]              127   1e-26
emb|CBI37296.3| unnamed protein product [Vitis vinifera]              127   1e-26
emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]   126   2e-26
gb|AGW47867.1| polyprotein [Phaseolus vulgaris]                       125   4e-26
gb|ABH07409.1| putative pol polyprotein [Brassica oleracea var. ...   125   4e-26
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi...   125   5e-26

>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  142 bits (358), Expect = 3e-31
 Identities = 108/376 (28%), Positives = 187/376 (49%), Gaps = 19/376 (5%)
 Frame = -1

Query: 1128 RYGGAKGNLVADANKK-----QYLQDKADKGDIKSFIEIMISSLYIINQEE*H---IDSG 973
            ++G       A +NKK      Y+++K  + D+     ++++S     QEE H   +DSG
Sbjct: 286  KFGHYASECKAPSNKKFEEKANYVEEKIQEEDM-----LLMASYKKDEQEENHKWYLDSG 340

Query: 972  YLHYMSRKRNMFREMK*INSE*VIFGDGSASQIIGEVTLTVKSNNENPFVIKNVYYVSEL 793
              ++M  +++MF E+       V  GD S  ++ G+  + ++  N +   I NVYY+  +
Sbjct: 341  ASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSM 400

Query: 792  QHNLISVGHLEDTGYYTILAKKYYIITKENNKLI--IPKMENNLYQVEFDKEII----VN 631
            + N++S+G L + GY   L      I  + + LI  +P  +N ++ +    +I     + 
Sbjct: 401  KTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMC 460

Query: 630  HKVGEDLWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRASFLL-SE 454
            +K    LW+ R G+++   L+  +   +      I   +  C  CL  K  + SF   S 
Sbjct: 461  YKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESS 520

Query: 453  NRRKIKLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAF*YFKSFQN 274
            +R +  L+ IHTD+   I+  S+ + NY+   IDD  R +++YFLK K   F  FK F+ 
Sbjct: 521  SRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKA 580

Query: 273  YI----GLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERKN*FLMN 106
            ++    GL IK++++++G EF+S EF      + I  Q     SPQ NG+ ERKN  ++ 
Sbjct: 581  HVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILE 640

Query: 105  MA*AMLNNVDLDNIGW 58
            MA +ML +  L    W
Sbjct: 641  MARSMLKSKRLPKELW 656


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  142 bits (357), Expect = 4e-31
 Identities = 108/376 (28%), Positives = 186/376 (49%), Gaps = 19/376 (5%)
 Frame = -1

Query: 1128 RYGGAKGNLVADANKK-----QYLQDKADKGDIKSFIEIMISSLYIINQEE*H---IDSG 973
            ++G       A +NKK      Y+++K  + D+     ++++S     QEE H   +DSG
Sbjct: 286  KFGHYASECKAPSNKKFEEKANYVEEKIQEEDM-----LLMASYKKDEQEENHKWYLDSG 340

Query: 972  YLHYMSRKRNMFREMK*INSE*VIFGDGSASQIIGEVTLTVKSNNENPFVIKNVYYVSEL 793
              ++M  +++MF E+       V  GD S  ++ G+  + ++  N +   I NVYY+  +
Sbjct: 341  ASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSM 400

Query: 792  QHNLISVGHLEDTGYYTILAKKYYIITKENNKLI--IPKMENNLYQVEFDKEII----VN 631
            + N++S+G L + GY   L      I  + + LI  +P  +N ++ +    +I     + 
Sbjct: 401  KTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMC 460

Query: 630  HKVGEDLWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRASFLLSEN 451
            +K    LW+ R G+++   L+  +   +      I   +  C  CL  K  + SF    +
Sbjct: 461  YKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESS 520

Query: 450  RRKIK-LDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAF*YFKSFQN 274
             R  K L+ IHTD+   I+  S+ + NY+   IDD  R +++YFLK K   F  FK F+ 
Sbjct: 521  SRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKA 580

Query: 273  YI----GLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERKN*FLMN 106
            ++    GL IK++++++G EF+S EF      + I  Q     SPQ NG+ ERKN  ++ 
Sbjct: 581  HVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILE 640

Query: 105  MA*AMLNNVDLDNIGW 58
            MA +ML +  L    W
Sbjct: 641  MARSMLKSKRLPKELW 656


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  142 bits (357), Expect = 4e-31
 Identities = 108/376 (28%), Positives = 187/376 (49%), Gaps = 19/376 (5%)
 Frame = -1

Query: 1128 RYGGAKGNLVADANKK-----QYLQDKADKGDIKSFIEIMISSLYIINQEE*H---IDSG 973
            ++G       A +NKK      Y+++K  + D+     ++++S     Q+E H   +DSG
Sbjct: 286  KFGHYASECKAPSNKKFEEKAHYVEEKIQEEDM-----LLMASYKKDEQKENHKWYLDSG 340

Query: 972  YLHYMSRKRNMFREMK*INSE*VIFGDGSASQIIGEVTLTVKSNNENPFVIKNVYYVSEL 793
              ++M  +++MF E+       V  GD S  ++ G+  + ++  N +   I NVYY+  +
Sbjct: 341  ASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSM 400

Query: 792  QHNLISVGHLEDTGYYTILAKKYYIITKENNKLI--IPKMENNLYQVEFDKEII----VN 631
            + N++S+G L + GY   L      I  + + LI  +P  +N ++ +    +I     + 
Sbjct: 401  KTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMC 460

Query: 630  HKVGEDLWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRASFLLSEN 451
            +K    LW+ R G+++   L+  +   +      I   +  C  CL  K  + SF    +
Sbjct: 461  YKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESS 520

Query: 450  RRKIK-LDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAF*YFKSFQN 274
             R  K L+ IHTD+   I+  S+ + NY+   IDD  R +++YFLK K   F  FK F+ 
Sbjct: 521  SRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKA 580

Query: 273  YI----GLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERKN*FLMN 106
            ++    GL IK++++++G EF+S EF      + I  Q     SPQ NG+VERKN  ++ 
Sbjct: 581  HVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILE 640

Query: 105  MA*AMLNNVDLDNIGW 58
            MA +ML +  L    W
Sbjct: 641  MARSMLKSKRLPKELW 656


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  142 bits (357), Expect = 4e-31
 Identities = 108/376 (28%), Positives = 187/376 (49%), Gaps = 19/376 (5%)
 Frame = -1

Query: 1128 RYGGAKGNLVADANKK-----QYLQDKADKGDIKSFIEIMISSLYIINQEE*H---IDSG 973
            ++G       A +NKK      Y+++K  + D+     ++++S     Q+E H   +DSG
Sbjct: 286  KFGHYASECKAPSNKKFEEKANYVEEKIQEEDM-----LLMASYKKDEQKENHKWYLDSG 340

Query: 972  YLHYMSRKRNMFREMK*INSE*VIFGDGSASQIIGEVTLTVKSNNENPFVIKNVYYVSEL 793
              ++M  +++MF E+       V  GD S  ++ G+  + ++  N +   I NVYY+  +
Sbjct: 341  ASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSM 400

Query: 792  QHNLISVGHLEDTGYYTILAKKYYIITKENNKLI--IPKMENNLYQVEFDKEII----VN 631
            + N++S+G L + GY   L      I  + + LI  +P  +N ++ +    +I     + 
Sbjct: 401  KTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMC 460

Query: 630  HKVGEDLWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRASFLLSEN 451
            +K    LW+ R G+++   L+  +   +      I   +  C  CL  K  + SF    +
Sbjct: 461  YKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESS 520

Query: 450  RRKIK-LDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAF*YFKSFQN 274
             R  K L+ IHTD+   I+  S+ + NY+   IDD  R +++YFLK K   F  FK F+ 
Sbjct: 521  SRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKA 580

Query: 273  YI----GLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERKN*FLMN 106
            ++    GL IK++++++G EF+S EF      + I  Q     SPQ NG+VERKN  ++ 
Sbjct: 581  HVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILE 640

Query: 105  MA*AMLNNVDLDNIGW 58
            MA +ML +  L    W
Sbjct: 641  MARSMLKSKRLPKELW 656


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1272

 Score =  139 bits (350), Expect = 2e-30
 Identities = 107/376 (28%), Positives = 184/376 (48%), Gaps = 19/376 (5%)
 Frame = -1

Query: 1128 RYGGAKGNLVADANKK-----QYLQDKADKGDIKSFIEIMISSLYIINQEE*H---IDSG 973
            ++G       A +NKK      Y+++K  + D+     ++++S     QEE H   +DSG
Sbjct: 286  KFGHYASECKAPSNKKFKEKANYVEEKIQEEDM-----LLMASYKKDEQEENHKWYLDSG 340

Query: 972  YLHYMSRKRNMFREMK*INSE*VIFGDGSASQIIGEVTLTVKSNNENPFVIKNVYYVSEL 793
              ++M  +++MF E+       V  GD S  ++ G+  + ++  N +   I NVYY+  +
Sbjct: 341  ASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSM 400

Query: 792  QHNLISVGHLEDTGYYTILAKKYYIITKENNKLI--IPKMENNLYQVEFDKEII----VN 631
            + N++S+G L + GY   L      I  + + LI  +P  +N ++ +    +I     + 
Sbjct: 401  KTNILSLGQLLEKGYDIRLKDNNLSIRDKESNLITKVPMSKNRMFVLNIRNDIAQCLKMC 460

Query: 630  HKVGEDLWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRASFLLSEN 451
            +K    LW+ R G+++   L+  +   +      I   +  C  CL     + SF    +
Sbjct: 461  YKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESS 520

Query: 450  RRKIK-LDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAF*YFKSFQN 274
             R  K L+ IHTD+   I+  S+ + NY+   IDD  R +++YFLK K   F  FK F+ 
Sbjct: 521  SRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKA 580

Query: 273  YI----GLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERKN*FLMN 106
            ++    GL IK+++++ G EF+S EF      + I  Q     SPQ NG+ ERKN  ++ 
Sbjct: 581  HVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILE 640

Query: 105  MA*AMLNNVDLDNIGW 58
            MA +ML +  L    W
Sbjct: 641  MARSMLKSKRLPKELW 656


>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1333

 Score =  139 bits (349), Expect = 3e-30
 Identities = 99/322 (30%), Positives = 163/322 (50%), Gaps = 13/322 (4%)
 Frame = -1

Query: 984  IDSGYLHYMSRKRNMFREMK*INSE*VIFGDGSASQIIGEVTLTVKSNNENPFVIKNVYY 805
            IDSG  ++MS  +++FR++       V  GD     I G+ T+ +K+   N   + +V Y
Sbjct: 313  IDSGCSNHMSSSKSLFRDLDESQKSEVRLGDDKQVHIEGKGTVEIKTVQGNVKFLYDVQY 372

Query: 804  VSELQHNLISVGHLEDTGYYTILAKKYY-IITKENNKLI--IPKMENNLYQVEF----DK 646
            V  L HNL+SVG L  +GY  +       I  KE+ + I  +P  +N ++ ++     + 
Sbjct: 373  VPTLAHNLLSVGQLMTSGYSVVFYDNACDIKDKESGRTIARVPMTQNKMFPLDISNVGNS 432

Query: 645  EIIVNHKVGEDLWNRRMGYISNTYLKK*AE-HAVRSHENTIIKNSSTCISCLARK*TRAS 469
             ++V  K   +LW+ R G+++  +LK   +   V    N  IK    C  C+  K TR S
Sbjct: 433  ALVVKEKNETNLWHLRYGHLNVNWLKLLVQKDMVIGLPN--IKELDLCEGCIYGKQTRKS 490

Query: 468  FLLSEN-RRKIKLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAF*Y 292
            F + ++ R    L+ +H DL   ++  S+    Y+    DD+ R S++YFLK+K   F  
Sbjct: 491  FPVGKSWRATTCLELVHADLCGPMKMESLGGSRYFLMFTDDYSRFSWVYFLKFKSETFET 550

Query: 291  FKSF----QNYIGLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERK 124
            FK F    +N  G  IKSL+ ++G EF S +F +   ++ I  +    Y+P+ NG+ ERK
Sbjct: 551  FKKFKAFVENQSGNKIKSLRTDRGGEFLSNDFNLFCEENGIRRELTAPYTPEQNGVAERK 610

Query: 123  N*FLMNMA*AMLNNVDLDNIGW 58
            N  ++ MA + L    L +  W
Sbjct: 611  NRTVVEMARSSLKAKGLPDYFW 632


>emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group]
          Length = 1314

 Score =  136 bits (343), Expect = 2e-29
 Identities = 108/351 (30%), Positives = 174/351 (49%), Gaps = 14/351 (3%)
 Frame = -1

Query: 1068 DKADKGDIKSFIEIMISSLYIINQEE*H---IDSGYLHYMSRKRNMFREMK*INSE*VIF 898
            ++A+    K   E M+ S +   +E+     IDSG  ++M+   N+FREM  +    +  
Sbjct: 304  NRANFSQEKEKSEEMVFSCHTAQEEKDDVWVIDSGCTNHMAADPNLFREMDSLYHAKIHM 363

Query: 897  GDGSASQIIGEVTLTVKSNNENPFVIKNVYYVSELQHNLISVGHLEDTGYYTILAK-KYY 721
            G+GS +Q  G+ T+ V++  + P  IK+V  V +L+ NL+S+G L + GY          
Sbjct: 364  GNGSIAQSEGKGTVAVQTA-DGPKFIKDVLLVPDLKQNLLSIGQLLEHGYAVYFEDFSCK 422

Query: 720  IITKENNKLI----IPKMENNLYQVEFDKEIIVNHKVG-EDLWNRRMGYISNTYLKK*AE 556
            I+ ++NN+L+    + K  N L ++    ++ +  +V   DLW++RMG+++   LK    
Sbjct: 423  ILDRKNNRLVAKINMEKNRNFLLRMNHTTQMALRSEVDISDLWHKRMGHLNYRALKLLRT 482

Query: 555  HAVRSHENTIIKNSSTCISCLARK*TRASFLLSEN-RRKIKLDQIHTDLYDLIRNLSIDE 379
              +      I   S  C  C+  K  +ASF  S   R     + +HTD+   +  +S   
Sbjct: 483  KGMVQGLPFITLKSDPCEGCVFGKQIQASFPHSGAWRASAPFELVHTDIVGKVPTMSEGG 542

Query: 378  CNYYTCLIDDHRRCSFIYFLKYKFHAF*YFKSF----QNYIGLTIKSLKNNQG*EFSSCE 211
              Y+   IDD+ R  ++YFLK K  A   FK F    +N     IK L+++QG E+ S E
Sbjct: 543  NWYFITFIDDYTRMIWVYFLKEKSAALETFKKFKVMVENQSNRKIKVLRSDQGGEYISKE 602

Query: 210  FEVNIRQHEINHQKITSYSPQ*NGIVERKN*FLMNMA*AMLNNVDLDNIGW 58
            FE       I  Q  T YS Q NG+ ERKN  + +MA +ML +  +    W
Sbjct: 603  FEKYCENAGIRRQLTTGYSAQQNGVAERKNRTINDMANSMLQDKGMPKSFW 653


>gb|ABA99612.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1198

 Score =  135 bits (339), Expect = 5e-29
 Identities = 109/351 (31%), Positives = 173/351 (49%), Gaps = 14/351 (3%)
 Frame = -1

Query: 1068 DKADKGDIKSFIEIMISSLYIINQEE*H---IDSGYLHYMSRKRNMFREMK*INSE*VIF 898
            ++A+    K   E M+ S +   +E+     IDSG  ++M+   N+FREM       +  
Sbjct: 248  NRANFSQEKEKSEEMVFSCHTAQEEKDDVWVIDSGCTNHMAADPNLFREMDSSYHAKIHM 307

Query: 897  GDGSASQIIGEVTLTVKSNNENPFVIKNVYYVSELQHNLISVGHLEDTGYYTILAK-KYY 721
            G+GS +Q  G+ T+ V++  + P  IK+V  V +L+ NL+S+G L + GY          
Sbjct: 308  GNGSIAQSEGKGTVAVQTA-DGPKFIKDVLLVPDLKQNLLSIGQLLEHGYAVYFEDFSCK 366

Query: 720  IITKENNKLIIP-KMENN---LYQVEFDKEIIVNHKVG-EDLWNRRMGYISNTYLKK*AE 556
            I+ ++NN+L+    ME N   L ++    ++ +  ++   DLW++RMG+++   LK    
Sbjct: 367  ILDRKNNRLVAKINMEKNINFLLRMNHPTQMALRSEIDISDLWHKRMGHLNYRALKLLRT 426

Query: 555  HAVRSHENTIIKNSSTCISCLARK*TRASFLLSEN-RRKIKLDQIHTDLYDLIRNLSIDE 379
              +      I   S  C  C+  K  RASF  S   R    L+ +HTD+   +  +S   
Sbjct: 427  KGMVQGLPFITLKSDPCEGCVFGKQIRASFPHSGAWRASAPLELVHTDIVGKVPTISEGG 486

Query: 378  CNYYTCLIDDHRRCSFIYFLKYKFHAF*YFKSF----QNYIGLTIKSLKNNQG*EFSSCE 211
              Y+   IDD+ R  ++YFLK K  A   FK F    +N     IK L+++QG E+ S E
Sbjct: 487  NWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGGEYISKE 546

Query: 210  FEVNIRQHEINHQKITSYSPQ*NGIVERKN*FLMNMA*AMLNNVDLDNIGW 58
            FE       I  Q    YS Q NG+ ERKN  + +MA +ML +  +    W
Sbjct: 547  FEKYCENAGIRRQLTAGYSAQQNGVAERKNRTINDMANSMLQDKGMPKSFW 597


>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108711922|gb|ABF99717.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1335

 Score =  134 bits (338), Expect = 6e-29
 Identities = 108/351 (30%), Positives = 172/351 (49%), Gaps = 14/351 (3%)
 Frame = -1

Query: 1068 DKADKGDIKSFIEIMISSLYIINQEE*H---IDSGYLHYMSRKRNMFREMK*INSE*VIF 898
            ++A+    K   E M+ S +   +E+     IDSG  ++M+   N+FREM       +  
Sbjct: 297  NRANFSQEKEKSEEMVFSCHTAQEEKDDVWVIDSGCTNHMAADPNLFREMDSSYHAKIHM 356

Query: 897  GDGSASQIIGEVTLTVKSNNENPFVIKNVYYVSELQHNLISVGHLEDTGYYTILAK-KYY 721
            G+GS +Q  G+ T+ V++  + P  IK+V  V +L+ NL+S+G L + GY          
Sbjct: 357  GNGSIAQSEGKGTVAVQTA-DGPKFIKDVLLVPDLKQNLLSIGQLLEHGYAVYFEDFSCK 415

Query: 720  IITKENNKLI----IPKMENNLYQVEFDKEIIVNHKVG-EDLWNRRMGYISNTYLKK*AE 556
            I+ ++NN+L+    + K  N L ++    ++ +  +V   DLW++RMG+++   LK    
Sbjct: 416  ILDRKNNRLVAKINMEKNRNFLLRMNHTTQMALRSEVDISDLWHKRMGHLNYRALKLLRT 475

Query: 555  HAVRSHENTIIKNSSTCISCLARK*TRASFLLSEN-RRKIKLDQIHTDLYDLIRNLSIDE 379
              +      I   S  C  C+  K  RASF  S   R    L+ +H D+   +  +S   
Sbjct: 476  KGMVQGLPFITLKSDPCEGCVFGKQIRASFPHSGAWRASAPLELVHADIVGKVPTISEGG 535

Query: 378  CNYYTCLIDDHRRCSFIYFLKYKFHAF*YFKSF----QNYIGLTIKSLKNNQG*EFSSCE 211
              Y+   IDD+ R  ++YFLK K  A   FK F    +N     IK L+++QG E+ S E
Sbjct: 536  NWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGREYISKE 595

Query: 210  FEVNIRQHEINHQKITSYSPQ*NGIVERKN*FLMNMA*AMLNNVDLDNIGW 58
            FE       I  Q    YS Q NG+ ERKN  + +MA +ML +  +    W
Sbjct: 596  FEKYCENAGIRRQLTAGYSAQQNGVAERKNRTINDMANSMLQDKGMPKSFW 646


>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
          Length = 1472

 Score =  130 bits (328), Expect = 9e-28
 Identities = 95/326 (29%), Positives = 164/326 (50%), Gaps = 17/326 (5%)
 Frame = -1

Query: 984  IDSGYLHYMSRKRNMFREMK*INSE*VIFGDGSASQIIGEVTLTVKSNNENPFVIKNVYY 805
            +DSG  ++M+  +++F+E+   +   V  GD    Q+ G+ T  V + + N  ++ NVY+
Sbjct: 293  LDSGCSNHMTGIKSLFKELDESHKLKVKLGDDKQVQVEGKGTXAVNNGHGNVKLLYNVYF 352

Query: 804  VSELQHNLISVGHLEDTGYYTILAKKYYIITKENNKLIIPKME---NNLYQVE---FDKE 643
            +  L  NL+SVG L  +GY  +      +I  + +  II  +    N L+ +E    +K 
Sbjct: 353  IPSLTQNLLSVGQLMVSGYSILFDGATCVIKDKKSDQIIVBVRMAANKLFPLEVSSIEKH 412

Query: 642  IIVNHKVGE-DLWNRRMGYISNTYLKK*AEHAVRSHENTI-----IKNSSTCISCLARK* 481
             +V  +  E +LW+ R G+++   LK      + S +  +     I + + C  C+  K 
Sbjct: 413  ALVVKETSESNLWHLRYGHLNVKGLK------LLSKKEMVFGLPKIDSVNVCEGCIYGKQ 466

Query: 480  TRASFLLSENRRKIK-LDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFH 304
            ++  F    +RR    L+ IH DL   ++  S     Y+    DDH R S++YFL+ K  
Sbjct: 467  SKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAE 526

Query: 303  AF*YFKSFQNYI----GLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGI 136
             F  FK F+ ++    G  IK L+ ++G EF S +F+V   +  ++ +  T YSP  NG+
Sbjct: 527  TFETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDFKVFXEEEGLHRELTTPYSPXQNGV 586

Query: 135  VERKN*FLMNMA*AMLNNVDLDNIGW 58
             ERKN  ++ MA +M+   +L N  W
Sbjct: 587  AERKNRTVVEMARSMMKAKNLSNHFW 612


>gb|ABW74566.1| integrase [Boechera divaricarpa]
          Length = 1165

 Score =  129 bits (324), Expect = 3e-27
 Identities = 92/330 (27%), Positives = 165/330 (50%), Gaps = 17/330 (5%)
 Frame = -1

Query: 987  HIDSGYLHYMSRKRNMFREMK*INSE*VIFGDGSASQIIGEVTLTVKSNNENPFVIKNVY 808
            ++DSG  ++M+  ++ F+E+   +   V  G+    Q+ G   + V + + N  +I  VY
Sbjct: 148  YLDSGCSNHMTGTKSSFKELDESHKLKVKLGNDKEVQVEGRGVVAVHNGHGNLKLIYGVY 207

Query: 807  YVSELQHNLISVGHLEDTGYYTILAKKYYIITKENNKL---IIPKMENNLYQVEFD---- 649
            Y+ +L HNL+SVG + +     +      +I ++ + +   ++ K  NNLY +E      
Sbjct: 208  YIPDLAHNLLSVGQMVENNCSVLFDGNECVIKEKKSGVTLAMVKKTSNNLYPLEMSSVET 267

Query: 648  KEIIVNHKVGEDLWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSST-----CISCLARK 484
            K ++        L + R G++    L+      V + ++ +I          C  C+  K
Sbjct: 268  KALVAKVSDISKLLHLRYGHLHENGLR------VLNQKDMVIGLPKIGALKLCEGCVYGK 321

Query: 483  *TRASFLLSENRRKIK-LDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKF 307
             +R SF +   RR  + L+ +H DL   ++  S+    Y+  L DD+ R S++YFLK K 
Sbjct: 322  QSRRSFPVGRARRATQYLEIVHADLCGPMQTASLGGSKYFLMLTDDYSRMSWVYFLKSKG 381

Query: 306  HAF*YFKSFQNYIGLT----IKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NG 139
             AF  FK+F+  +       +K L+ ++G EF+S +F     +  I+H+  T+Y+P+ NG
Sbjct: 382  EAFDMFKNFKALVEKQSEQQVKVLRTDRGGEFTSTKFNQFCEKEGIHHELTTAYTPEQNG 441

Query: 138  IVERKN*FLMNMA*AMLNNVDLDNIGWMRS 49
            + ERKN  ++ MA +ML   +L N  W  S
Sbjct: 442  VAERKNTTVVEMARSMLKERNLPNQFWAES 471


>emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]
          Length = 1269

 Score =  129 bits (324), Expect = 3e-27
 Identities = 94/318 (29%), Positives = 154/318 (48%), Gaps = 9/318 (2%)
 Frame = -1

Query: 984  IDSGYLHYMSRKRNMFREMK*INSE*VIFGDGSASQIIGEVTLTVKSNNENPFVIKNVYY 805
            IDSG   +M++  ++F  +       V  G+G   Q  G+ T+ + S      ++ NV Y
Sbjct: 318  IDSGCTSHMTKHLSIFTSIDRSVQPKVKLGNGEVVQAKGKGTIAI-STKRGTKIVTNVLY 376

Query: 804  VSELQHNLISVGHLEDTGYYTILAKKYYIITK-ENNKLIIPKMENNLYQVEFD--KEIIV 634
            + +L  NL+SV  +   GY     + +  I+     K+   KM  N + ++ D  +  + 
Sbjct: 377  IPDLDQNLLSVAQMLRNGYAVSFKENFCFISDVHGTKIAKIKMNGNSFYLKLDLVEGHVF 436

Query: 633  NHKVGEDL-WNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRASFLLS 457
            + K+ E + W++R G+ +   L+   E  +      I  N+ TC SC   K  R  F  +
Sbjct: 437  SAKIDESVVWHKRYGHFNLKSLRFMQEAGMVEDMPEISVNAQTCESCELGKQQRQPFPQN 496

Query: 456  ENRRKI-KLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAF*YFKSF 280
             ++R   KL+ IH+D+   +   S+    Y+   IDD  R +++YFLK K      FKSF
Sbjct: 497  MSKRATHKLELIHSDICGPMSTTSLSNNVYFALFIDDFSRMTWVYFLKTKSQVLSMFKSF 556

Query: 279  QNYI----GLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERKN*FL 112
            +  +    G  +K L+ + G E++S EF V  ++  I HQ    YSPQ NG+ +RKN  +
Sbjct: 557  KKMVETQSGQNVKVLRTDNGGEYTSKEFSVFCQEAGIVHQLTAPYSPQQNGVSKRKNRTV 616

Query: 111  MNMA*AMLNNVDLDNIGW 58
            M MA  ML    L  + W
Sbjct: 617  MEMARCMLFEKKLPKLLW 634


>emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]
          Length = 1274

 Score =  128 bits (322), Expect = 4e-27
 Identities = 93/326 (28%), Positives = 164/326 (50%), Gaps = 17/326 (5%)
 Frame = -1

Query: 984  IDSGYLHYMSRKRNMFREMK*INSE*VIFGDGSASQIIGEVTLTVKSNNENPFVIKNVYY 805
            +DSG  ++M+  +++F+E+   +   V  GD     + G+  + V + + N  ++ NVY+
Sbjct: 308  LDSGCSNHMTGIKSLFKELDESHKLKVKLGDDKQVXVEGKGIMAVNNGHGNVKLLYNVYF 367

Query: 804  VSELQHNLISVGHLEDTGYYTILAKKYYIITKENNKLIIPKME---NNLYQVE---FDKE 643
            +  L  NL+SVG L  +GY  +      +I  + +  II  +    N L+ +E    +K 
Sbjct: 368  IPSLTQNLLSVGQLMVSGYSILFDGATCVIKDKKSDQIIVNVRMAANKLFPLEVSSIEKH 427

Query: 642  IIVNHKVGE-DLWNRRMGYISNTYLKK*AEHAVRSHENTI-----IKNSSTCISCLARK* 481
             +V  +  E +LW+ R G+++   LK      + S +  +     I + + C  C+  K 
Sbjct: 428  ALVVKETSESNLWHLRYGHLNVKGLK------LLSKKEMVFGLPKIDSVNVCEGCIYGKQ 481

Query: 480  TRASFLLSENRRKIK-LDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFH 304
            ++  F    +RR    L+ IH DL   ++  S     Y+    DDH R S++YFL+ K  
Sbjct: 482  SKKPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAE 541

Query: 303  AF*YFKSFQNYI----GLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGI 136
             F  FK F+ ++    G  IK L+ ++G EF S +F+V   +  ++ +  T YSP+ NG+
Sbjct: 542  TFETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDFKVFCEEEGLHRELTTPYSPEQNGV 601

Query: 135  VERKN*FLMNMA*AMLNNVDLDNIGW 58
             ERKN  ++ MA +M+   +L N  W
Sbjct: 602  AERKNRTVVEMARSMMKAKNLSNHFW 627


>gb|AAT38786.2| Gag-pol polyprotein, putative [Solanum demissum]
          Length = 1140

 Score =  127 bits (319), Expect = 1e-26
 Identities = 95/318 (29%), Positives = 161/318 (50%), Gaps = 9/318 (2%)
 Frame = -1

Query: 984  IDSGYLHYMSRKRNMFREMK*INSE*VIFGDGSASQIIGEVTLTVKSNNENPFVIKNVYY 805
            +DSG  H+M+   N+F  +       V  GDG      G+  + V++ +    +I NV +
Sbjct: 336  VDSGCTHHMTANLNIFEWLDKKYFSKVRLGDGRLVDAAGKGAVAVQTPSGMK-IISNVLF 394

Query: 804  VSELQHNLISVGHLEDTGYYTILAKKYY-IITKENNKLIIPKMENNLYQVEFDKEIIVNH 628
            V E+  +L+SVG L D  Y  +   K   I+     KL+  KM N  + +++    I  +
Sbjct: 395  VPEISQSLLSVGQLLDKNYALLFKDKTCEIMDPTGIKLLSVKMNNRSFPLDWKHTDIGAY 454

Query: 627  KVGED---LWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRASFLLS 457
               +D   +W++R+G I+   LK      + +   +I + S+ C  C   K +++ F ++
Sbjct: 455  VSIQDETYVWHKRLGQINFKSLKLMQNKDLVADMPSINETSNVCGVCQIGKLSQSPFPIN 514

Query: 456  ENRRKI-KLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAF*YFKSF 280
            +  R   KL  IHTD+   +   S +   Y+   I+D  R  ++YFLK+K   F  F+ F
Sbjct: 515  QAWRATEKLQLIHTDVCGPMSTPSYNGSKYFLLFINDLTRFCWVYFLKHKSEVFVAFQRF 574

Query: 279  ----QNYIGLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERKN*FL 112
                +N  G  IK L+++ G EF+S +F+  +++  I+HQ   +Y+PQ NG+ ERKN  +
Sbjct: 575  KATVENQCGSLIKILRSDNGTEFTSNQFKDFLQKAGIHHQLTVTYTPQQNGVSERKNRSI 634

Query: 111  MNMA*AMLNNVDLDNIGW 58
            MNMA  +L    L  + W
Sbjct: 635  MNMARCLLFEKGLPKVLW 652


>emb|CBI40240.3| unnamed protein product [Vitis vinifera]
          Length = 2196

 Score =  127 bits (318), Expect = 1e-26
 Identities = 94/318 (29%), Positives = 153/318 (48%), Gaps = 9/318 (2%)
 Frame = -1

Query: 984  IDSGYLHYMSRKRNMFREMK*INSE*VIFGDGSASQIIGEVTLTVKSNNENPFVIKNVYY 805
            IDSG   +M++  ++F  +       V  G+G   Q  G+ T+ + +      ++ NV Y
Sbjct: 337  IDSGCTSHMTKYLSIFTSIDRSVQPKVKLGNGEVVQAKGKGTIAISTKRRTK-IVTNVLY 395

Query: 804  VSELQHNLISVGHLEDTGYYTILAKKYYIITKENNKLIIP-KMENNLYQVEFD--KEIIV 634
            + +L  NL+SV  +   GY       +  IT  + K I   KM  N + ++ D  +  + 
Sbjct: 396  IPDLDQNLLSVAQMLRNGYAVFFKGNFCFITNVHGKEIAKIKMNGNNFYLKLDLVEGHVF 455

Query: 633  NHKVGEDL-WNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRASFLLS 457
            + K+ E + W++R G+ +   L+   E  +      I  N+ TC SC   K  R  F  +
Sbjct: 456  SAKIDESVVWHKRYGHFNLKSLRFMQEAGMVEDMPEISVNAQTCESCELGKQQRQPFPQN 515

Query: 456  ENRRKI-KLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAF*YFKSF 280
             +++   KL+ I++D+   +   S+    Y+   IDD  R +++YFLK K      FKSF
Sbjct: 516  MSKKATHKLELINSDICGPMSTASLSNNVYFALFIDDLSRMTWVYFLKTKSQVLSVFKSF 575

Query: 279  QNYI----GLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERKN*FL 112
            +  +    G  +K L+ + G E+ S E  V  ++  I HQ I  YSPQ NG+ ERKN  +
Sbjct: 576  KKMVETQSGQNVKVLRTDNGGEYISKELNVFCQEAGIVHQLIAPYSPQQNGVFERKNRTV 635

Query: 111  MNMA*AMLNNVDLDNIGW 58
            M MA  ML    L  + W
Sbjct: 636  MEMARCMLFEKKLPKLLW 653


>emb|CBI37296.3| unnamed protein product [Vitis vinifera]
          Length = 3048

 Score =  127 bits (318), Expect = 1e-26
 Identities = 98/323 (30%), Positives = 160/323 (49%), Gaps = 14/323 (4%)
 Frame = -1

Query: 984  IDSGYLHYMSRKRNMFREMK*INSE*VIFGDGSASQIIGEVTLTVKSNNENPFVIKNVYY 805
            +DSG  ++M  K++ F +      + V  G+ ++  ++G+  + +K N E   +I  V+Y
Sbjct: 322  LDSGCSNHMCGKKDYFSDFDGTFRDSVKLGNNTSMSVLGKGNVRLKVN-EMTQIITGVFY 380

Query: 804  VSELQHNLISVGHLEDTGYYTILAK--KYYIITKENNKLIIPKMENN----LYQVEFDKE 643
            V EL++NL+S+G L++ G  TIL +  K  +   +   ++  KM +N    LY +     
Sbjct: 381  VPELKNNLLSIGQLQEKGL-TILFQHGKCKVFHSQKGLIMDTKMSSNRMFMLYALSQPIS 439

Query: 642  IIVNHKVGED---LWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRA 472
                + V ED   LW+ R G++S   LK   +  + +        S  C  CL  K  R+
Sbjct: 440  STCFNTVTEDILQLWHCRYGHLSFQGLKTLQQRKMVNGLPQFQPPSKLCKDCLVGKQHRS 499

Query: 471  SFLLSENRRKIKLDQ-IHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAF* 295
            S     N R  ++ Q +H D+   I  +S  +  Y     DD  R +++YFL  K  AF 
Sbjct: 500  SIPKKSNWRAAEILQLVHADICGPINPISNSKKRYLLTFTDDFSRKTWVYFLVEKSEAFA 559

Query: 294  YFKSFQNYI----GLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVER 127
             FKSF+ Y+       ++ L+ ++G EF+S EF +    H I  Q   +Y+PQ NG+ ER
Sbjct: 560  VFKSFKTYVEKETSSFLRCLRTDRGGEFTSQEFAIFCDVHGIRRQLTAAYTPQQNGVAER 619

Query: 126  KN*FLMNMA*AMLNNVDLDNIGW 58
            KN  +MNM  +ML+   L    W
Sbjct: 620  KNRTIMNMVRSMLSAKKLPKTFW 642


>emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]
          Length = 2041

 Score =  126 bits (317), Expect = 2e-26
 Identities = 94/318 (29%), Positives = 153/318 (48%), Gaps = 9/318 (2%)
 Frame = -1

Query: 984  IDSGYLHYMSRKRNMFREMK*INSE*VIFGDGSASQIIGEVTLTVKSNNENPFVIKNVYY 805
            IDSG   +M++  ++F  +       V  G+G   Q  G+ T+ + S      ++ NV Y
Sbjct: 1051 IDSGXTSHMTKHLSIFTSIDRSVQPKVKLGNGEXVQAKGKGTIAI-STKRGTKIVTNVLY 1109

Query: 804  VSELQHNLISVGHLEDTGYYTILAKKYYIITKENNKLIIP-KMENNLYQVEFD--KEIIV 634
            + +L  NL+SV  +   GY     + +  I+  +   I   KM  N + ++ D  +  + 
Sbjct: 1110 IPDLDQNLLSVAQMLRNGYXVSFKENFCFISDVHGTEIXKIKMNGNSFYLKLDLVEGHVF 1169

Query: 633  NHKVGEDL-WNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRASFLLS 457
            + K+ E + W++R  + +   L+   E  +      I  N+ TC SC   K  R  F  +
Sbjct: 1170 SAKIDESVVWHKRYXHFNLKSLRFMQEAXMVEDMPEISVNAQTCESCELGKQQRQPFPQN 1229

Query: 456  ENRRKI-KLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAF*YFKSF 280
             ++R   KL+ IH+D+   +   S+    Y+   IDD  R +++YFLK K      FKSF
Sbjct: 1230 MSKRATHKLELIHSDICGPMSTTSLSNNVYFALFIDDFSRMTWVYFLKTKSQVLSMFKSF 1289

Query: 279  QNYI----GLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERKN*FL 112
            +  +    G  +K L+ + G E++S EF V  ++  I HQ    YSPQ NG+ ERKN  +
Sbjct: 1290 KKMVETQSGQXVKVLRTDNGGEYTSKEFSVFCQEAGIVHQLTAPYSPQXNGVSERKNRTV 1349

Query: 111  MNMA*AMLNNVDLDNIGW 58
            M MA  ML    L  + W
Sbjct: 1350 MEMARCMLFEKKLPKLLW 1367


>gb|AGW47867.1| polyprotein [Phaseolus vulgaris]
          Length = 1471

 Score =  125 bits (314), Expect = 4e-26
 Identities = 91/322 (28%), Positives = 161/322 (50%), Gaps = 12/322 (3%)
 Frame = -1

Query: 987  HIDSGYLHYMSRKRNMFREMK*INSE*VIFGDGSASQIIGEVTLTVKSNNENPFVIKNVY 808
            ++DSG  ++M     +F++M+ I    V FGD S  ++ G  T+     +     +++VY
Sbjct: 357  YLDSGASNHMCGHEYLFKDMQKIEDGHVSFGDASKVEVKGRGTVCYLQKDGLIGSLQDVY 416

Query: 807  YVSELQHNLISVGHLEDTGYYTILAKKYYIITKENNKLIIPKME---NNLYQVEF----D 649
            YV +L+ N++S+G L + GY +I  K  ++  K     ++ ++E   N +Y++      +
Sbjct: 417  YVPDLKTNILSMGQLTEKGY-SIFLKDRFLHLKNKQGCLVARIEMARNRMYKLNLRSIRE 475

Query: 648  KEIIVNHKVGEDLWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRAS 469
            K + VN +    LW+ R G++ +  LK+ A+  +      +      C  C+  K  R S
Sbjct: 476  KCLQVNIEDKASLWHLRFGHLHHGGLKELAKKNMVHGLPNMDYEGKFCEECVLSKHVRTS 535

Query: 468  F-LLSENRRKIKLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAF*Y 292
            F   ++   K  L+ IHTD+   I   S     Y+   IDD  R +++YFLK K  AF  
Sbjct: 536  FPKKAQYWAKQPLELIHTDICGPITPESFSGKRYFITFIDDFSRKTWVYFLKEKSEAFEV 595

Query: 291  FKSFQNYIGLT----IKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERK 124
            FK F+  +  T    IK++++++G E++S  F     +  I       Y+PQ NG+ ERK
Sbjct: 596  FKKFKVMVERTTDKQIKAVRSDRGGEYTSTTFMEYCEEQGIRRFLTAPYTPQQNGVAERK 655

Query: 123  N*FLMNMA*AMLNNVDLDNIGW 58
            N  +++M  +ML +  +    W
Sbjct: 656  NRTILDMVRSMLKSKKMPKEFW 677


>gb|ABH07409.1| putative pol polyprotein [Brassica oleracea var. botrytis]
          Length = 1239

 Score =  125 bits (314), Expect = 4e-26
 Identities = 89/321 (27%), Positives = 161/321 (50%), Gaps = 11/321 (3%)
 Frame = -1

Query: 987  HIDSGYLHYMSRKRNMFREMK*INSE*VIFGDGSASQIIGEVTLTVKSNNENPFVIKNVY 808
            ++D+G  ++M+  ++ F E+       V FGDGS  +I G+ ++  ++      ++ N+Y
Sbjct: 202  YLDNGASNHMTGDKSFFSELNESIKGRVKFGDGSCVKINGKGSIIFEAKTGEQKLLTNIY 261

Query: 807  YVSELQHNLISVGHLEDTGYYTILAKKYYIITKENNKLIIP--KMENNLYQV--EFDKEI 640
            Y+ EL+ N++S+G   + G    +   Y  +   + +L++   +  N LY+V  +  K  
Sbjct: 262  YIPELRSNILSLGQATEQGCDVRMKDNYLTLRDPSGRLLVKVLRSPNRLYKVSLKVGKPS 321

Query: 639  IVNHKVGED--LWNRRMGYISNTYLKK*AEHAVRSHENTIIKNSSTCISCLARK*TRASF 466
             +  K+ E+   W+ R+G+I+   +K  A+  +      I +    C SCL  K TR SF
Sbjct: 322  CLLTKINEEPWRWHARLGHINFKTIKDMAKLEMVRGLPEINEEKKLCESCLVGKQTRNSF 381

Query: 465  -LLSENRRKIKLDQIHTDLYDLIRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAF*YF 289
               + +R    L+ +H DL   I   ++ +  Y   +IDD+ R  +   LK K   F  F
Sbjct: 382  PSATPHRSSQVLELLHADLCGPISPSTLAQNRYIFVIIDDNTRYMWSILLKEKSEVFEKF 441

Query: 288  KSF----QNYIGLTIKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERKN 121
            K+F    +  +   I +L+ ++G EF+S +F+     + I       Y+PQ NG+VER+N
Sbjct: 442  KTFKALVEKEVNKVIVTLRTDRGGEFTSRDFQDYCNNNGIRRHLTAPYTPQQNGVVERRN 501

Query: 120  *FLMNMA*AMLNNVDLDNIGW 58
              LM M  +ML  +++ N  W
Sbjct: 502  RTLMEMTRSMLKAMNVPNYMW 522


>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  125 bits (313), Expect = 5e-26
 Identities = 100/371 (26%), Positives = 176/371 (47%), Gaps = 23/371 (6%)
 Frame = -1

Query: 1089 NKKQYLQDKADKGDIKS-----------FIEIMISSLYIINQEE*HIDSGYLHYMSRKRN 943
            NK Q+ Q +  KG+              ++   +SS  +  ++E  +D+G  ++M+ KR 
Sbjct: 265  NKPQFKQSQVVKGESSGGKGNLAEAAGYYVSEALSSTEVHLEDEWILDTGCSYHMTYKRE 324

Query: 942  MFREMK*INSE*VIFGDGSASQIIGEVTLTVKSNNENPFVIKNVYYVSELQHNLISVGHL 763
             F E        V  G+ + S++ G  T+ VK+++    V+ NV Y+ ++  NL+S+G  
Sbjct: 325  WFHEFNEDAGGSVRMGNKTVSRVRGVGTIRVKNSDGLTIVLTNVRYIPDMDRNLLSLGTF 384

Query: 762  EDTGYYTILAKKYYIITKENNKLIIPKMENNLYQVEFD---KEIIVNHKVGED--LWNRR 598
            E  GY          I   N  L+  +  + LY + +     E +   K  +D  LW++R
Sbjct: 385  EKAGYKFESEDGILRIKAGNQVLLTGRRYDTLYLLNWKPVASESLAVVKRADDTVLWHQR 444

Query: 597  MGYISNTYLKK*AEHAVRSH--ENTIIKNSSTCISCLARK*TRASFLLSENRRKIKLDQI 424
            + ++S    +K  E  VR    +   + +   C  C+  K  R SF L+ +  K KL+ I
Sbjct: 445  LCHMS----QKNMEILVRKGFLDKKKVSSLDVCEDCIYGKAKRKSFSLAHHDTKEKLEYI 500

Query: 423  HTDLYDL-IRNLSIDECNYYTCLIDDHRRCSFIYFLKYKFHAF*YFKSF----QNYIGLT 259
            H+DL+      LS+ +C Y+  +IDD  R  ++YF+K K  AF  F  +    +N     
Sbjct: 501  HSDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYFMKTKDEAFEKFVEWVNLVENQTDRR 560

Query: 258  IKSLKNNQG*EFSSCEFEVNIRQHEINHQKITSYSPQ*NGIVERKN*FLMNMA*AMLNNV 79
            +K+L+ + G EF +  F+       I+  +  +Y+PQ NG+ ER N  +M    +ML++ 
Sbjct: 561  VKTLRTDNGLEFCNKLFDGFCESIGIHRHRTCAYTPQQNGVAERMNRTIMEKVRSMLSDS 620

Query: 78   DLDNIGWMRSS 46
             L    W  ++
Sbjct: 621  GLPKRFWAEAT 631