BLASTX nr result
ID: Ephedra25_contig00024424
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra25_contig00024424 (1583 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 321 6e-85 ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [A... 320 1e-84 ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr... 313 1e-82 gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis] 313 2e-82 ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 312 3e-82 ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mit... 311 5e-82 ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit... 311 6e-82 ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 310 1e-81 ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mit... 310 1e-81 gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theob... 309 2e-81 ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatul... 308 4e-81 ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 307 9e-81 ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 305 3e-80 ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian... 305 5e-80 gb|ESW29223.1| hypothetical protein PHAVU_002G053600g [Phaseolus... 303 1e-79 gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus pe... 303 1e-79 ref|XP_002883182.1| pseudouridine synthase family protein [Arabi... 301 4e-79 ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mit... 300 9e-79 gb|EMJ01008.1| hypothetical protein PRUPE_ppa004969mg [Prunus pe... 300 9e-79 ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutr... 300 1e-78 >ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera] gi|296090438|emb|CBI40257.3| unnamed protein product [Vitis vinifera] Length = 476 Score = 321 bits (822), Expect = 6e-85 Identities = 175/399 (43%), Positives = 240/399 (60%), Gaps = 9/399 (2%) Frame = +3 Query: 75 TALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRP 254 TAL+WV +CCP++P +L+QK+FRLRQV+ ++M Sbjct: 94 TALKWVVRCCPQLPRSLVQKLFRLRQVR-RESYNMITSDIGVQNQEHRLKRVAAKDLMNL 152 Query: 255 GMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQG 434 G ++ L SEK + + + ++ +L +YKDP +IV+NKP GLPVQG Sbjct: 153 GDQILLPITVEEFP-----SEKHE-YHCNDEEINFVHNLELYKDPAIIVVNKPPGLPVQG 206 Query: 435 GPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEK 614 G GI++S+D LA L Y E PRLVHRLD+D SG+L+MGRT+ SA++LH++FREKT Sbjct: 207 GIGIKRSLDELAATYLRYDCSEPPRLVHRLDRDSSGILIMGRTQTSATILHSIFREKTFG 266 Query: 615 FSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNST 794 S+ D + L+RRYWALVIG+ + +G I APL KVV DD SERI I + S+ Sbjct: 267 ASNNDIDTKKRILQRRYWALVIGSPRRPRGLISAPLGKVVVDDGKSERITIVDNVQTMSS 326 Query: 795 QDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRP 974 Q A+T++RVI S +G TWLEL P TGRKHQ+RVHCAE LG PI+GDYKYGW AH+KW+ Sbjct: 327 QHAITEYRVIKSSCHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWKQ 386 Query: 975 F--DPISKHIESELNAE-------ELNSGSVLSEEPLLHLHCRQISIPNITEAMNRPDIX 1127 I K+++ L+ +L SGS+L ++P LHLHC+Q+ +PN++ A+ + Sbjct: 387 LFQSNIEKNLDENLSNRKTHPFGLDLESGSILDKQPHLHLHCKQMVLPNVSLALQNLQLS 446 Query: 1128 XXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYMS 1244 FVAPLPSHM RSWD ++ Sbjct: 447 AECDLSELESL----------EFVAPLPSHMQRSWDILN 475 >ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [Amborella trichopoda] gi|548850328|gb|ERN08832.1| hypothetical protein AMTR_s00015p00025410 [Amborella trichopoda] Length = 457 Score = 320 bits (820), Expect = 1e-84 Identities = 173/401 (43%), Positives = 235/401 (58%), Gaps = 6/401 (1%) Frame = +3 Query: 60 KPPKVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXX 239 K P TAL+WV +CCP+VP +L+QK+FRLRQV+ Sbjct: 71 KAPSTTALKWVLRCCPQVPRSLIQKLFRLRQVRKESLNPAIASCLHKQAQYQQIKRVFAK 130 Query: 240 EIMRPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSG 419 + + G +++L E + M+YI SL +YKD ++V+NKP G Sbjct: 131 DTLNSGDRIFLPITVNPAV------EVEDDYICNKEEMEYIRSLEVYKDAAIVVVNKPPG 184 Query: 420 LPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFR 599 LPVQGG G++ S+D L ++L Y Y E PRLVHRLD+D SG+LVMGRT+ES +LLH++FR Sbjct: 185 LPVQGGTGVKLSLDVLVASSLKYDYSEVPRLVHRLDQDSSGILVMGRTQESTTLLHSIFR 244 Query: 600 EKTEKFS-SEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHE 776 +KT S + D LKR+YWALVIG +G I APL+K++ DD SERI ++ + Sbjct: 245 DKTCGASFNVDIKNSKIILKRKYWALVIGNPQPSEGLISAPLSKLLLDDGKSERITVSED 304 Query: 777 KEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSA 956 + S + A+T++RV+ S +G TWLEL P TGRKHQ+RVHCAE LG PILGDYKYGW+A Sbjct: 305 SKNKSARHAITEYRVLRSSGHGFTWLELYPRTGRKHQLRVHCAEVLGTPILGDYKYGWNA 364 Query: 957 HKKWRPFDPISKHIESELNAE-----ELNSGSVLSEEPLLHLHCRQISIPNITEAMNRPD 1121 H+KW+PF + E LN + +L GSV ++P LHLHCRQ+++PN++ A Sbjct: 365 HRKWKPFPTLK--FEERLNRKAPFGLDLEGGSVSDKKPRLHLHCRQMTLPNMSLAFQH-- 420 Query: 1122 IXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYMS 1244 VAPLP HM RSWD ++ Sbjct: 421 --------LHEQSVDDLSKLEKLDLVAPLPLHMRRSWDILN 453 >ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina] gi|557524859|gb|ESR36165.1| hypothetical protein CICLE_v10028283mg [Citrus clementina] Length = 494 Score = 313 bits (802), Expect = 1e-82 Identities = 168/401 (41%), Positives = 237/401 (59%), Gaps = 9/401 (2%) Frame = +3 Query: 69 KVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIM 248 + TAL+WV +CCP +P +QK+FRL QV+ + + Sbjct: 110 ETTALKWVLQCCPGLPRNFVQKLFRLSQVR-RESPSLDSSANEGHEQEIKLKRVAAKDSL 168 Query: 249 RPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPV 428 + G +++L + + + +I+SL +YKD +IV+NKP G+PV Sbjct: 169 KLGDRIFLPISIQESP------SRKEKCPCTEEEVGFIQSLELYKDSAIIVINKPHGMPV 222 Query: 429 QGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKT 608 QGG GI++SID LA L+Y Y E PRLVHRLD+D SG+LVMGRT+ SA++LH++FREKT Sbjct: 223 QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 282 Query: 609 EKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGN 788 S ED + L+R YWALV+GT +G I APL KVV D+ S+RI + + + Sbjct: 283 FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLRKVVVDNGKSDRITVVNNDQIM 342 Query: 789 STQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKW 968 S Q AVT ++VI PS +G TWL+L P TGRKHQ+RVHCAE LG PI+GDYKYGW H+KW Sbjct: 343 SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW 402 Query: 969 RPFDP--ISKHIESELNAE-------ELNSGSVLSEEPLLHLHCRQISIPNITEAMNRPD 1121 + F P ++K E E +L SGS+L ++P LHLHC+++++PN+++A+ + Sbjct: 403 KQFHPSDLNKDSNDETPKEKTLHFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQKVQ 462 Query: 1122 IXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYMS 1244 + + VAPLPSHM RSWD ++ Sbjct: 463 LSSGCDVSKLESL----------KLVAPLPSHMQRSWDVLN 493 >gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis] Length = 470 Score = 313 bits (801), Expect = 2e-82 Identities = 173/400 (43%), Positives = 233/400 (58%), Gaps = 9/400 (2%) Frame = +3 Query: 60 KPPKVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXX 239 K TAL+WV +CCPE+P +L+QK+FRLRQV+ Sbjct: 83 KSAATTALKWVVRCCPELPRSLVQKLFRLRQVR-RESFNVEDCNAGDQLGKPRLRRVSAK 141 Query: 240 EIMRPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSG 419 + + G K++L EK + + +K+I SL +YKDP ++V+NKP G Sbjct: 142 DSLNLGDKIFLPISVKELPV-----EKKECF-CNEEEVKFIRSLELYKDPAIVVVNKPPG 195 Query: 420 LPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFR 599 LPVQGG GI+ S+D LAV LSY Y E PRLVHRLD+DCSG+LVMGRT+ SA++LH++FR Sbjct: 196 LPVQGGIGIKTSLDQLAVTCLSYDYTEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFR 255 Query: 600 EKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEK 779 EKT S+++ L+RRYWA VIG+ G I APL KVV D+ S+RI + + Sbjct: 256 EKTFGASNDETVKGKIVLQRRYWAFVIGSPRHPNGLISAPLRKVVLDNGKSDRITVVNGS 315 Query: 780 EGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAH 959 S+Q A+T ++VIG S +G TWLEL P TGRKHQ+RVHCAE LG P++GDYKYGW AH Sbjct: 316 HTLSSQHAITKYKVIGSSSHGYTWLELSPLTGRKHQLRVHCAEVLGTPMVGDYKYGWQAH 375 Query: 960 KKWRPF---DPISKHIESELNAEEL------NSGSVLSEEPLLHLHCRQISIPNITEAMN 1112 + W+P DP +K IE + L ++GS+ + P LHLHC+Q+ +PNI+ + Sbjct: 376 RDWKPLHWPDPDNKCIEVLPKRKNLPFGLNMDNGSISEKHPRLHLHCKQMVLPNISHVLQ 435 Query: 1113 RPDIXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSW 1232 + APLPS+M RSW Sbjct: 436 N----------VQRYSDYELSRLERLKLDAPLPSYMQRSW 465 >ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cicer arietinum] Length = 458 Score = 312 bits (799), Expect = 3e-82 Identities = 174/395 (44%), Positives = 235/395 (59%), Gaps = 8/395 (2%) Frame = +3 Query: 75 TALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRP 254 TAL+WV +CCP++P L+ K+FRLRQV++ + + Sbjct: 80 TALKWVTQCCPQIPKTLVHKLFRLRQVRMLPNSPLIADKLKRVGAK---------DTLNS 130 Query: 255 GMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQG 434 G +++L + Q L L + +K++ SLVIYKDP +VLNKP G+PVQG Sbjct: 131 GDRIFLPNSVKQQHQHQQTPK--QPLTLTPKQIKFMRSLVIYKDPATVVLNKPPGMPVQG 188 Query: 435 GPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEK 614 G I+ S+D+LA ++L+Y Y + PRLVHRLD+DCSG+LVMGRT+ S +LH++FR+KT + Sbjct: 189 GINIKWSLDALAASSLNYDYSQPPRLVHRLDRDCSGILVMGRTQTSTVVLHSIFRDKTSR 248 Query: 615 FSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNST 794 S + T + L+RRYWALVIG + G I +PL KVV D+ S+RI I + S+ Sbjct: 249 ASDHNDTE-KRILQRRYWALVIGRPRRSGGLITSPLGKVVVDNGKSDRITIVNNSTLVSS 307 Query: 795 QDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRP 974 Q AVT++RV+G S G TWLEL P TGRKHQ+RVHCAE LG PI+GDYKYGW AHKKW Sbjct: 308 QHAVTEYRVLGSSSDGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKKWGH 367 Query: 975 FDPIS-KHIESELNAEE-------LNSGSVLSEEPLLHLHCRQISIPNITEAMNRPDIXX 1130 FD + + EL EE LN GS+ + P LHLHC+QI +PNI++A+ D+ Sbjct: 368 FDLCNLEDSTEELLKEETLPFGLNLNKGSISDKHPRLHLHCKQIILPNISQALQ--DVQS 425 Query: 1131 XXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWD 1235 + A LP +M RSWD Sbjct: 426 LSASNCDLSVVEAL------KLEAELPPYMQRSWD 454 >ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform X2 [Glycine max] Length = 429 Score = 311 bits (797), Expect = 5e-82 Identities = 170/395 (43%), Positives = 228/395 (57%), Gaps = 8/395 (2%) Frame = +3 Query: 75 TALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRP 254 TAL+WV +CCP +P AL+ K+FRLRQV++ I+ P Sbjct: 56 TALKWVVRCCPHLPRALVHKLFRLRQVRIHPATVIQQQTFKRVRVAAKDTLNTGDRILLP 115 Query: 255 GMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQG 434 + + L + + +I +LVIYKDP ++VLNKP G+PVQG Sbjct: 116 --------------QSVKVKQTPTHSHLTPQQINFIRTLVIYKDPAILVLNKPPGMPVQG 161 Query: 435 GPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEK 614 G I++S+D++A A+L+YGY + PRLVHRLD+DCSG+LVMGRT S ++LH++FREKT + Sbjct: 162 GINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVMGRTHTSTTVLHSIFREKTSR 221 Query: 615 FSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNST 794 +S+D + L+RRYWALV+G + +G + A L KVV D+ S+RI I S+ Sbjct: 222 -ASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTLMSS 280 Query: 795 QDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRP 974 Q A+T++RVI S G TWLEL P TGRKHQ+RVHCAE LG PI+GDYKYGW AH+KW Sbjct: 281 QHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGH 340 Query: 975 FD-PISKHIESELNAEE-------LNSGSVLSEEPLLHLHCRQISIPNITEAMNRPDIXX 1130 FD P + EL EE LN GS+ P LHLHC+Q+ +PNI++A+ Sbjct: 341 FDLPNVEDSREELLNEEKLPFGLNLNKGSISENHPRLHLHCKQMVLPNISQALQN----- 395 Query: 1131 XXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWD 1235 VA LP +M RSWD Sbjct: 396 -----VQSASSCDLSLVEELELVADLPPYMQRSWD 425 >ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Solanum tuberosum] Length = 467 Score = 311 bits (796), Expect = 6e-82 Identities = 171/412 (41%), Positives = 241/412 (58%), Gaps = 9/412 (2%) Frame = +3 Query: 36 IERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXX 215 ++ +++ +TAL+WV +CCPE+P +L+QK+FRLRQV+ Sbjct: 80 VKMDVKENSTNTMTALKWVQRCCPELPKSLVQKLFRLRQVR----------RDSSNVEEQ 129 Query: 216 XXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQL 395 E M G +++L SEK K++ SL +YKDP++ Sbjct: 130 RPKRVSAKESMNVGDRIFLPITVQKFP-----SEKVVYYPSSEEERKFVHSLELYKDPEI 184 Query: 396 IVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESA 575 +V+NKP G+PVQGG GI++S+D LA + + Y E PRLVHRLD+DCSG+LVMGRT+ SA Sbjct: 185 VVVNKPPGMPVQGGIGIKRSLDELAAKYMRHEYSEAPRLVHRLDRDCSGLLVMGRTQLSA 244 Query: 576 SLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSE 755 S LH++FREKT +ED + L+++YWALVIG + G I APL K+V D+ SE Sbjct: 245 SALHSIFREKTFDSQNEDLESKKRILQKKYWALVIGCPRRSGGIISAPLGKLVLDNGKSE 304 Query: 756 RILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGD 935 RI I + S Q AVT++R+IG S G TWLEL P TGRKHQ+RVHCAEALG PI+GD Sbjct: 305 RITIMSDVRAPSAQYAVTEYRIIGSSEKGYTWLELSPLTGRKHQLRVHCAEALGTPIVGD 364 Query: 936 YKYGWSAHKKWR--PFDPISKHIESELNAEE-------LNSGSVLSEEPLLHLHCRQISI 1088 YKYGW AH+K + P ++ ++ ++ L +GS+ ++P LHLHC+++ + Sbjct: 365 YKYGWQAHRKLKHLPLPTSVLNLGVQIPRQKPDPFNLRLGNGSISDKQPHLHLHCKEMVL 424 Query: 1089 PNITEAMNRPDIXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYMS 1244 PNI+ A+ R + + VAPLP HM +SWD +S Sbjct: 425 PNISLALQRAQVVSDTDLVDVESI----------KLVAPLPFHMQKSWDCLS 466 >ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum lycopersicum] Length = 467 Score = 310 bits (794), Expect = 1e-81 Identities = 173/400 (43%), Positives = 236/400 (59%), Gaps = 9/400 (2%) Frame = +3 Query: 72 VTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMR 251 +TAL+WV +CCPE+P +L+QK+FRLRQV+ E M Sbjct: 92 MTALKWVQRCCPELPKSLVQKLFRLRQVR----------RDSSNVEEQRPKRVSAKESMN 141 Query: 252 PGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQ 431 G +++L SEK K++ SL +YKD ++IV+NKP G+PVQ Sbjct: 142 VGDRIFLPITVQKFP-----SEKVVYYPSSEEERKFVHSLELYKDAEIIVVNKPPGMPVQ 196 Query: 432 GGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTE 611 GG GI++S+D LA +S+ Y E PRLVHRLD+DCSG+LVMGRT+ SAS LH++FREKT Sbjct: 197 GGIGIKRSLDELAAKYMSHQYSEAPRLVHRLDRDCSGLLVMGRTQLSASALHSIFREKTF 256 Query: 612 KFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNS 791 +ED + L+++YWALVIG + G I APL K+V D+ SERI I + S Sbjct: 257 DSQNEDLESKKRILQKKYWALVIGCPRRSGGIISAPLGKLVLDNGKSERITIMSDVREPS 316 Query: 792 TQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWR 971 Q AVT++R+IG S G TWLEL P TGRKHQ+RVHCAEALG PI+GDYKYGW AH+K + Sbjct: 317 AQYAVTEYRIIGSSEKGYTWLELSPLTGRKHQLRVHCAEALGTPIVGDYKYGWQAHRKLK 376 Query: 972 --PFDPISKHIESELNAEE-------LNSGSVLSEEPLLHLHCRQISIPNITEAMNRPDI 1124 P ++ E+ ++ L +GS+ ++P LHLHC+++ +PNI+ A+ R + Sbjct: 377 HLPLPTSVLNLVVEIPRQKPDPFNLRLGNGSISDKQPHLHLHCKEMVLPNISLALQRAQV 436 Query: 1125 XXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYMS 1244 + VAPLP HM +SWD +S Sbjct: 437 VSDADLVDVESI----------KLVAPLPFHMQKSWDCLS 466 >ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform X1 [Glycine max] Length = 427 Score = 310 bits (793), Expect = 1e-81 Identities = 170/395 (43%), Positives = 231/395 (58%), Gaps = 8/395 (2%) Frame = +3 Query: 75 TALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRP 254 TAL+WV +CCP +P AL+ K+FRLRQV++ + + Sbjct: 56 TALKWVVRCCPHLPRALVHKLFRLRQVRIHPATVIQQQTFKRVAAK---------DTLNT 106 Query: 255 GMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQG 434 G ++ L + + L + + +I +LVIYKDP ++VLNKP G+PVQG Sbjct: 107 GDRILLPQSVK-------VKQTPTHSHLTPQQINFIRTLVIYKDPAILVLNKPPGMPVQG 159 Query: 435 GPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEK 614 G I++S+D++A A+L+YGY + PRLVHRLD+DCSG+LVMGRT S ++LH++FREKT + Sbjct: 160 GINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVMGRTHTSTTVLHSIFREKTSR 219 Query: 615 FSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNST 794 +S+D + L+RRYWALV+G + +G + A L KVV D+ S+RI I S+ Sbjct: 220 -ASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTLMSS 278 Query: 795 QDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRP 974 Q A+T++RVI S G TWLEL P TGRKHQ+RVHCAE LG PI+GDYKYGW AH+KW Sbjct: 279 QHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGH 338 Query: 975 FD-PISKHIESELNAEE-------LNSGSVLSEEPLLHLHCRQISIPNITEAMNRPDIXX 1130 FD P + EL EE LN GS+ P LHLHC+Q+ +PNI++A+ Sbjct: 339 FDLPNVEDSREELLNEEKLPFGLNLNKGSISENHPRLHLHCKQMVLPNISQALQN----- 393 Query: 1131 XXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWD 1235 VA LP +M RSWD Sbjct: 394 -----VQSASSCDLSLVEELELVADLPPYMQRSWD 423 >gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao] Length = 477 Score = 309 bits (791), Expect = 2e-81 Identities = 167/403 (41%), Positives = 235/403 (58%), Gaps = 11/403 (2%) Frame = +3 Query: 69 KVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIM 248 + TA++WV +CCPE+P +L+QK+FRLRQV+ ++ Sbjct: 93 ETTAVKWVMRCCPELPRSLVQKLFRLRQVR---------RESHVLEVAGDGCQVQTVQLK 143 Query: 249 RPGMK--LYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGL 422 R G K L + E+ Q + +I L +YKDP +IVLNKP G+ Sbjct: 144 RVGAKDALNIGDRIFLPFSVREFREEKQESGCTEEELNFIRGLELYKDPAIIVLNKPPGM 203 Query: 423 PVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFRE 602 PVQGG GI+ S+D LA A L + Y E PRLVHRLD+D SG+LVMGRT+ SA++LH++FRE Sbjct: 204 PVQGGIGIKWSLDKLAAACLCFDYSEPPRLVHRLDRDSSGILVMGRTQMSATILHSVFRE 263 Query: 603 KTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKE 782 +T S +D + L++RYWALVIG+ + +G I+APL KVV DD S+RI + + Sbjct: 264 ETNDASKDDVDNEKRILQKRYWALVIGSPRRPKGMIVAPLRKVVVDDGKSDRITVFDNSQ 323 Query: 783 GNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHK 962 S+Q A T+++VI + +G TWLEL P TGRKHQ+RVHCAE LG PI+GDYKYGW AH+ Sbjct: 324 IVSSQRAKTEYQVIKTTSHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHR 383 Query: 963 KWR--PFDPISKHIESELNAE-------ELNSGSVLSEEPLLHLHCRQISIPNITEAMNR 1115 +W+ P + K + E ++SGS+ ++ P LHLHCR++ PN+++A+ Sbjct: 384 RWQHLPESDLKKSSNDKCPEENMLPFGLNMDSGSISAKRPRLHLHCREMIFPNVSQALQN 443 Query: 1116 PDIXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYMS 1244 + VAPLPS+M +SWD M+ Sbjct: 444 LQLSTDHDLSKLKSL----------EVVAPLPSYMQKSWDIMN 476 >ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatula] gi|355501934|gb|AES83137.1| RNA pseudourine synthase [Medicago truncatula] Length = 430 Score = 308 bits (789), Expect = 4e-81 Identities = 164/353 (46%), Positives = 219/353 (62%), Gaps = 9/353 (2%) Frame = +3 Query: 78 ALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPG 257 AL+WV +CCPE+P L+ K+FRL+QV++ + + G Sbjct: 50 ALKWVIRCCPELPKTLIHKLFRLKQVRMLPRQQDDNKFKRVTPK----------DTLNSG 99 Query: 258 MKLYLXXXXXXXXXXXXMSEKAQS-LRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQG 434 +++L K +S L L + + +I SLVIYKDP ++VLNKP G+PVQG Sbjct: 100 DRIFLPNSVKQQIPLTPTPPKHESPLTLTAKQINFIRSLVIYKDPHILVLNKPPGMPVQG 159 Query: 435 GPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEK 614 G I+ S+D++A +L+Y Y + PRLVHRLD+DCSG+LVMGRTK S +LLH++FREKT + Sbjct: 160 GINIKLSLDAVAAQSLNYDYSQPPRLVHRLDRDCSGILVMGRTKTSTALLHSIFREKTSR 219 Query: 615 FSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNST 794 S+E+ L+RRYWALV+G + G + APL KVV D+ S+RI I S+ Sbjct: 220 ASNEENDTEKIILQRRYWALVLGCPRRSGGVVNAPLGKVVVDNGKSDRITIVDNSALLSS 279 Query: 795 QDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRP 974 Q AVT++RVI S +G TWLEL P TGRKHQ+RVHCAE LG PI+GDYKYG AHKKW Sbjct: 280 QHAVTEYRVISSSSHGFTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHKKWGQ 339 Query: 975 FD--PISKHIESELNAE------ELNSGSVLSEEPLLHLHCRQISIPNITEAM 1109 FD + E L E LN GS+ + P LHLHC+QI +PNI++A+ Sbjct: 340 FDFSNLEDSTEEHLKEEALPFGLNLNKGSISDKHPRLHLHCKQIVLPNISQAL 392 >ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis sativus] Length = 471 Score = 307 bits (786), Expect = 9e-81 Identities = 167/399 (41%), Positives = 237/399 (59%), Gaps = 8/399 (2%) Frame = +3 Query: 72 VTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMR 251 +TAL+WV +CCPE+P +L+QK+FRLR KV +I+ Sbjct: 95 ITALKWVIRCCPELPRSLVQKLFRLR--KVRRGSSMIENSEYNLEARDQLKRVAAKDILN 152 Query: 252 PGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQ 431 G +++L +EK + + ++ SLV++KDP ++V+NKP GLPVQ Sbjct: 153 VGDQIFLPMSVQVFS-----TEKTRDY-CNKEEETFMHSLVLHKDPAILVINKPPGLPVQ 206 Query: 432 GGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTE 611 GG G+++S+D LA + LSYGY E PRLVHRLD+D SG+L+MGRT S SLLH++FREKT Sbjct: 207 GGIGVKRSLDELAASCLSYGYSEPPRLVHRLDRDSSGILIMGRTSTSTSLLHSVFREKTF 266 Query: 612 KFSSEDPTMFGQK--LKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEG 785 + S + +K L +RYWALVIG+ + +G I APL K+V DD SE+I++ E Sbjct: 267 EASKHANHVDSEKKILLKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEP 326 Query: 786 NSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKK 965 Q A+T ++VI S +G TWLELCP TGRKHQ+RVHCAE LG PI+GDYKYGW AHK Sbjct: 327 MPFQQAITQYKVI-KSHHGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKN 385 Query: 966 WRPFDPISKHIESELNAE------ELNSGSVLSEEPLLHLHCRQISIPNITEAMNRPDIX 1127 W+PF S +++ + + SGS+ P LHLHC+Q+++P+++ A++ + Sbjct: 386 WKPF--CSNFHKNQGKKQFLPFGLDFESGSIAENSPRLHLHCKQLTLPDVSFALHNDSLD 443 Query: 1128 XXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYMS 1244 APLPS+M +SWD ++ Sbjct: 444 RDCSRLECL------------ELDAPLPSYMQKSWDIIN 470 >ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis sativus] Length = 466 Score = 305 bits (782), Expect = 3e-80 Identities = 166/399 (41%), Positives = 237/399 (59%), Gaps = 8/399 (2%) Frame = +3 Query: 72 VTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMR 251 +TAL+WV +CCPE+P +L+QK+FRLR+V +I+ Sbjct: 95 ITALKWVIRCCPELPRSLVQKLFRLRKVP-------RQLNVGCGNSHHQLKRVAAKDILN 147 Query: 252 PGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQ 431 G +++L +EK + + ++ SLV++KDP ++V+NKP GLPVQ Sbjct: 148 VGDQIFLPMSVQVFS-----TEKTRDY-CNKEEETFMHSLVLHKDPAILVINKPPGLPVQ 201 Query: 432 GGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTE 611 GG G+++S+D LA + LSYGY E PRLVHRLD+D SG+L+MGRT S SLLH++FREKT Sbjct: 202 GGIGVKRSLDELAASCLSYGYSEPPRLVHRLDRDSSGILIMGRTSTSTSLLHSVFREKTF 261 Query: 612 KFSSEDPTMFGQK--LKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEG 785 + S + +K L +RYWALVIG+ + +G I APL K+V DD SE+I++ E Sbjct: 262 EASKHANHVDSEKKILLKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEP 321 Query: 786 NSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKK 965 Q A+T ++VI S +G TWLELCP TGRKHQ+RVHCAE LG PI+GDYKYGW AHK Sbjct: 322 MPFQQAITQYKVI-KSHHGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKN 380 Query: 966 WRPFDPISKHIESELNAE------ELNSGSVLSEEPLLHLHCRQISIPNITEAMNRPDIX 1127 W+PF S +++ + + SGS+ P LHLHC+Q+++P+++ A++ + Sbjct: 381 WKPF--CSNFHKNQGKKQFLPFGLDFESGSIAENNPRLHLHCKQLTLPDVSFALHNDSLD 438 Query: 1128 XXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYMS 1244 APLPS+M +SWD ++ Sbjct: 439 RDCSRLECL------------ELDAPLPSYMQKSWDIIN 465 >ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana] gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA pseudouridine synthase 4, mitochondrial; AltName: Full=RNA pseudouridylate synthase 4; AltName: Full=RNA-uridine isomerase 4; Flags: Precursor gi|11994467|dbj|BAB02469.1| unnamed protein product [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1| hypothetical protein [Arabidopsis thaliana] gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine synthase 4 [Arabidopsis thaliana] Length = 477 Score = 305 bits (780), Expect = 5e-80 Identities = 174/416 (41%), Positives = 242/416 (58%), Gaps = 3/416 (0%) Frame = +3 Query: 3 LGKNLMEDNFPIERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXX 182 +GK+L+ D ++ S K TALRW+ +C P++P L+QK+FRLRQV+ Sbjct: 70 VGKDLLSDGDSVKSSTDNSK---TTALRWILRCRPDLPRTLVQKLFRLRQVR----REMS 122 Query: 183 XXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYI 362 E + G ++YL ++K +S + K++ Sbjct: 123 MSVDGDELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPQTPPAKK-ESFQCSDEERKFV 181 Query: 363 ESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSG 542 SLV+YKDP +IVLNKP GL VQGG GI+ SID LA + L + E PRLVHRLD+DCSG Sbjct: 182 CSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAASCLKFDKSESPRLVHRLDRDCSG 241 Query: 543 VLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPL 722 +LV+ RT+ +A++LH++FREKT S+ + LKR+Y ALVIG +++G+I APL Sbjct: 242 LLVLARTQTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQRGQISAPL 301 Query: 723 TKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHC 902 KVV DD SERI + E STQ A+T++RVI S +G TWLEL P TGRKHQ+RVHC Sbjct: 302 RKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHC 361 Query: 903 AEALGMPILGDYKYGWSAHKKWRPFDPISKHIESELNAE---ELNSGSVLSEEPLLHLHC 1073 AE LG PI+GDYKYGW AHK PF + + ++ +L+ G V S++P LHLH Sbjct: 362 AEVLGTPIVGDYKYGWQAHKAREPFVSSENNPTKQSSSPFGLDLDGGDVSSKQPHLHLHS 421 Query: 1074 RQISIPNITEAMNRPDIXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYM 1241 +QI +PNI++ + + + +F APLPSHM S++ + Sbjct: 422 KQIDLPNISQLLEKMQVSSDSDISDLDSL----------KFDAPLPSHMQLSFNLL 467 >gb|ESW29223.1| hypothetical protein PHAVU_002G053600g [Phaseolus vulgaris] Length = 432 Score = 303 bits (777), Expect = 1e-79 Identities = 167/398 (41%), Positives = 225/398 (56%), Gaps = 8/398 (2%) Frame = +3 Query: 75 TALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRP 254 TAL+W+ +CCP P +LL K+FRLRQV+V + + Sbjct: 60 TALKWIVRCCPSAPISLLHKLFRLRQVRVLSPPHTETLKRVAAK-----------DTLNS 108 Query: 255 GMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQG 434 G ++ L + L + + +I +LVI+KDP ++VLNKP G+PVQG Sbjct: 109 GDRILLPQSVQQKPTPTRKPHSS----LTPQQINFIRTLVIHKDPAILVLNKPPGMPVQG 164 Query: 435 GPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEK 614 G I+ S+D +A A L+Y Y E PRLVHRLD+DCSG+LVMGRT+ S ++LH++FREKT + Sbjct: 165 GINIKHSLDVVAAACLNYEYSEPPRLVHRLDRDCSGILVMGRTQTSTTVLHSIFREKTSR 224 Query: 615 FSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNST 794 + +D + L+RRYWALV+G +G + A L KVV D+ S+RI + S+ Sbjct: 225 -ALDDTEEEKRILQRRYWALVLGRPRCSKGLVTASLGKVVVDNGKSDRITVVDNSTSLSS 283 Query: 795 QDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRP 974 Q A+T++RVI S G TWLEL P TGRKHQ+RVHCAE LG PI+GDYKYGW AH+KW Sbjct: 284 QHAITEYRVIASSSQGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGN 343 Query: 975 FD--PISKHIESELNAE------ELNSGSVLSEEPLLHLHCRQISIPNITEAMNRPDIXX 1130 FD + E L E LN+GS+ P LHLHC++I +PNI+EA+ Sbjct: 344 FDLSNVEDSCEEHLKEETLPFGLNLNNGSISENRPRLHLHCKKIVLPNISEALQN----- 398 Query: 1131 XXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYMS 1244 + VA LP +M RSWD S Sbjct: 399 -----VQSFSNCDLSQVEGLQLVADLPPYMQRSWDITS 431 >gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica] Length = 483 Score = 303 bits (776), Expect = 1e-79 Identities = 168/400 (42%), Positives = 230/400 (57%), Gaps = 13/400 (3%) Frame = +3 Query: 75 TALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRP 254 TAL+WV +CCPE+P +L+QK+FRLRQV+ + M Sbjct: 94 TALKWVTRCCPELPRSLVQKLFRLRQVR-RESCDMECSGEGVEALERPLKRVAAKDSMNV 152 Query: 255 GMKLYLXXXXXXXXXXXX-MSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQ 431 G +++L + + + +I SL +YKDP +IV+NKP G+PVQ Sbjct: 153 GDRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQ 212 Query: 432 GGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTE 611 GG GI++S+D LA A LSY + E PRLVHRLD+D SG+LVMGRT+ SA++LH++FREKT Sbjct: 213 GGIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTF 272 Query: 612 KFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNS 791 S+++ + L+RRYWALVIG+ Q++G I APL KVV D+ S+RI I ++ + Sbjct: 273 GASNDEIDDAKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLP 332 Query: 792 TQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWR 971 +Q A+T ++VIG G TWLEL P TGRKHQ+RVHCAE L PI+GDYKYGW H+ W+ Sbjct: 333 SQHAITKYKVIGSPCPGYTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWK 392 Query: 972 PFD------------PISKHIESELNAEELNSGSVLSEEPLLHLHCRQISIPNITEAMNR 1115 P P K++ +LN E SGSV + P LHLHC+Q+ +PN+ A+ Sbjct: 393 PLAWSNNECHSDEEFPKRKNLPFDLNME---SGSVSEKNPRLHLHCKQMVLPNVNLALQN 449 Query: 1116 PDIXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWD 1235 + VA LPS M RSW+ Sbjct: 450 VKLHSDSDLSELESL----------ELVAALPSFMQRSWN 479 >ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297329022|gb|EFH59441.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] Length = 477 Score = 301 bits (772), Expect = 4e-79 Identities = 174/416 (41%), Positives = 240/416 (57%), Gaps = 3/416 (0%) Frame = +3 Query: 3 LGKNLMEDNFPIERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXX 182 +GK+L+ D ++ S K TALRW+ +C P++P L+QK+FRLRQV+ Sbjct: 70 VGKDLLSDGDSVKASTDNSK---TTALRWILRCRPDLPRTLVQKLFRLRQVR----RQMS 122 Query: 183 XXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYI 362 E + G ++YL ++K +S + K++ Sbjct: 123 LSVDGHELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPPTPPAKK-ESFQCSEEERKFV 181 Query: 363 ESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSG 542 SLV+YKDP +IVLNKP GL VQGG GI+ SID LA L++ E PRLVHRLD+DCSG Sbjct: 182 CSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAATCLTFDKSESPRLVHRLDRDCSG 241 Query: 543 VLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPL 722 +LV+ RT+ +A++LH++FREKT S+ + LKR+Y ALVIG +++G+I APL Sbjct: 242 LLVLARTQTAATVLHSIFREKTCGASAYGVKKNIKSLKRKYMALVIGCPRRQKGQISAPL 301 Query: 723 TKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHC 902 KVV DD S+RI + E STQ A+T+++VI S +G TWLEL P TGRKHQ+RVHC Sbjct: 302 RKVVVDDGKSDRITVNDNGELVSTQHAITEYKVIESSPHGYTWLELRPLTGRKHQLRVHC 361 Query: 903 AEALGMPILGDYKYGWSAHKKWRPF---DPISKHIESELNAEELNSGSVLSEEPLLHLHC 1073 AE LG PILGDYKYGW AHK PF + S +L+ G V S++P LHLH Sbjct: 362 AEVLGTPILGDYKYGWQAHKAREPFVSSETTPTKPSSSPFGLDLDGGDVSSKQPHLHLHS 421 Query: 1074 RQISIPNITEAMNRPDIXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYM 1241 +QI +PNI++ + + + +F APLPSHM S++ + Sbjct: 422 KQIDLPNISQLLEKMQVSSDSDISDLDSL----------KFDAPLPSHMQLSFNLL 467 >ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform X1 [Citrus sinensis] gi|568867349|ref|XP_006487000.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform X2 [Citrus sinensis] Length = 362 Score = 300 bits (769), Expect = 9e-79 Identities = 151/307 (49%), Positives = 206/307 (67%), Gaps = 9/307 (2%) Frame = +3 Query: 351 MKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDK 530 +++I+SL +YKD +IV+NKP G+PVQGG GI++SID LA L+Y Y E PRLVHRLD+ Sbjct: 65 VEFIQSLELYKDSAIIVINKPHGMPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDR 124 Query: 531 DCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRI 710 D SG+LVMGRT+ SA++LH++FREKT S ED + L+R YWALV+GT +G I Sbjct: 125 DSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKKILQRWYWALVVGTPRCSKGVI 184 Query: 711 IAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQV 890 APL KVV D+ S+RI + + + S Q AVT ++VI PS +G TWL+L P TGRKHQ+ Sbjct: 185 SAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQL 244 Query: 891 RVHCAEALGMPILGDYKYGWSAHKKWRPFDP--ISKHIESELNAE-------ELNSGSVL 1043 RVHCAE LG PI+GDYKYGW H+KW+ F P +SK E+ E +L SGS+L Sbjct: 245 RVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSIL 304 Query: 1044 SEEPLLHLHCRQISIPNITEAMNRPDIXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMS 1223 ++P LHLHC+++++PN+++A+ + + + VAPLPSHM Sbjct: 305 EKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETL----------KLVAPLPSHMQ 354 Query: 1224 RSWDYMS 1244 RSWD ++ Sbjct: 355 RSWDVLN 361 >gb|EMJ01008.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica] Length = 481 Score = 300 bits (769), Expect = 9e-79 Identities = 168/400 (42%), Positives = 230/400 (57%), Gaps = 13/400 (3%) Frame = +3 Query: 75 TALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRP 254 TAL+WV +CCPE+P +L+QK+FRLRQV+ + M Sbjct: 94 TALKWVTRCCPELPRSLVQKLFRLRQVR-RESCDMECSGEGVEALERPLKRVAAKDSMNV 152 Query: 255 GMKLYLXXXXXXXXXXXX-MSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQ 431 G +++L + + + +I SL +YKDP +IV+NKP G+PVQ Sbjct: 153 GDRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQ 212 Query: 432 GGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTE 611 GG GI++S+D LA A LSY + E PRLVHRLD+D SG+LVMGRT+ SA++LH++FREKT Sbjct: 213 GGIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTF 272 Query: 612 KFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNS 791 S+++ + L+RRYWALVIG+ Q++G I APL KVV D+ S+RI I ++ + Sbjct: 273 GASNDEIDDAKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLP 332 Query: 792 TQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWR 971 +Q A+T ++VIG Y TWLEL P TGRKHQ+RVHCAE L PI+GDYKYGW H+ W+ Sbjct: 333 SQHAITKYKVIGSPCY--TWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWK 390 Query: 972 PFD------------PISKHIESELNAEELNSGSVLSEEPLLHLHCRQISIPNITEAMNR 1115 P P K++ +LN E SGSV + P LHLHC+Q+ +PN+ A+ Sbjct: 391 PLAWSNNECHSDEEFPKRKNLPFDLNME---SGSVSEKNPRLHLHCKQMVLPNVNLALQN 447 Query: 1116 PDIXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWD 1235 + VA LPS M RSW+ Sbjct: 448 VKLHSDSDLSELESL----------ELVAALPSFMQRSWN 477 >ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutrema salsugineum] gi|557107647|gb|ESQ47954.1| hypothetical protein EUTSA_v10020633mg [Eutrema salsugineum] Length = 477 Score = 300 bits (768), Expect = 1e-78 Identities = 176/417 (42%), Positives = 239/417 (57%), Gaps = 4/417 (0%) Frame = +3 Query: 3 LGKNLMEDNFPIERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXX 182 +GK L D ++ S TALRW+ +C P++P L+QK+FRLRQV+ Sbjct: 73 VGKELFSDGDSVKASS----DGSTTALRWILRCRPDLPRTLVQKLFRLRQVR----REMS 124 Query: 183 XXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYI 362 E + G ++YL K +S K++ Sbjct: 125 LSCDGDELQRSQLKRVAAKESLNLGDRIYLPLSVNNDAPPPA---KKESFCCSEEERKFV 181 Query: 363 ESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSG 542 SLV+YKDP +IVLNKP GL VQGG GI+ SID LA L++G E PRLVHRLD+DCSG Sbjct: 182 CSLVLYKDPAIIVLNKPHGLAVQGGTGIKISIDELAATCLTFGKSESPRLVHRLDRDCSG 241 Query: 543 VLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPL 722 +LV+GRT+ +A++LH++FREKT S+ + LKR+Y ALVIG +++G+I APL Sbjct: 242 LLVLGRTQTAATVLHSIFREKTSGASAYSVKKNIKSLKRKYLALVIGCPRRQRGQISAPL 301 Query: 723 TKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHC 902 KVV DD S+RI + E STQ A+T++RVI S +G TWLEL P TGRKHQ+RVHC Sbjct: 302 RKVVVDDGKSDRITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHC 361 Query: 903 AEALGMPILGDYKYGWSAHKKWRPF----DPISKHIESELNAEELNSGSVLSEEPLLHLH 1070 AE LG PILGDYKYGW AHK PF + +K S +L+ G V S++P LHLH Sbjct: 362 AEVLGTPILGDYKYGWQAHKSREPFVSSGNTPTKPSLSPFGL-DLDGGDVSSKQPHLHLH 420 Query: 1071 CRQISIPNITEAMNRPDIXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYM 1241 +QI +PNI++ + + ++ +F APLP+HM S++ + Sbjct: 421 SKQIDLPNISQLLEQLEVSSDSDSSEHDCL----------KFDAPLPAHMQLSFNLL 467