BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00024424
         (1583 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   321   6e-85
ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [A...   320   1e-84
ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr...   313   1e-82
gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]           313   2e-82
ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   312   3e-82
ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mit...   311   5e-82
ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit...   311   6e-82
ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   310   1e-81
ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mit...   310   1e-81
gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theob...   309   2e-81
ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatul...   308   4e-81
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   307   9e-81
ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   305   3e-80
ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian...   305   5e-80
gb|ESW29223.1| hypothetical protein PHAVU_002G053600g [Phaseolus...   303   1e-79
gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus pe...   303   1e-79
ref|XP_002883182.1| pseudouridine synthase family protein [Arabi...   301   4e-79
ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mit...   300   9e-79
gb|EMJ01008.1| hypothetical protein PRUPE_ppa004969mg [Prunus pe...   300   9e-79
ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutr...   300   1e-78

>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera]
            gi|296090438|emb|CBI40257.3| unnamed protein product
            [Vitis vinifera]
          Length = 476

 Score =  321 bits (822), Expect = 6e-85
 Identities = 175/399 (43%), Positives = 240/399 (60%), Gaps = 9/399 (2%)
 Frame = +3

Query: 75   TALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRP 254
            TAL+WV +CCP++P +L+QK+FRLRQV+                           ++M  
Sbjct: 94   TALKWVVRCCPQLPRSLVQKLFRLRQVR-RESYNMITSDIGVQNQEHRLKRVAAKDLMNL 152

Query: 255  GMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQG 434
            G ++ L             SEK +    +   + ++ +L +YKDP +IV+NKP GLPVQG
Sbjct: 153  GDQILLPITVEEFP-----SEKHE-YHCNDEEINFVHNLELYKDPAIIVVNKPPGLPVQG 206

Query: 435  GPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEK 614
            G GI++S+D LA   L Y   E PRLVHRLD+D SG+L+MGRT+ SA++LH++FREKT  
Sbjct: 207  GIGIKRSLDELAATYLRYDCSEPPRLVHRLDRDSSGILIMGRTQTSATILHSIFREKTFG 266

Query: 615  FSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNST 794
             S+ D     + L+RRYWALVIG+  + +G I APL KVV DD  SERI I    +  S+
Sbjct: 267  ASNNDIDTKKRILQRRYWALVIGSPRRPRGLISAPLGKVVVDDGKSERITIVDNVQTMSS 326

Query: 795  QDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRP 974
            Q A+T++RVI  S +G TWLEL P TGRKHQ+RVHCAE LG PI+GDYKYGW AH+KW+ 
Sbjct: 327  QHAITEYRVIKSSCHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWKQ 386

Query: 975  F--DPISKHIESELNAE-------ELNSGSVLSEEPLLHLHCRQISIPNITEAMNRPDIX 1127
                 I K+++  L+         +L SGS+L ++P LHLHC+Q+ +PN++ A+    + 
Sbjct: 387  LFQSNIEKNLDENLSNRKTHPFGLDLESGSILDKQPHLHLHCKQMVLPNVSLALQNLQLS 446

Query: 1128 XXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYMS 1244
                                  FVAPLPSHM RSWD ++
Sbjct: 447  AECDLSELESL----------EFVAPLPSHMQRSWDILN 475


>ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [Amborella trichopoda]
            gi|548850328|gb|ERN08832.1| hypothetical protein
            AMTR_s00015p00025410 [Amborella trichopoda]
          Length = 457

 Score =  320 bits (820), Expect = 1e-84
 Identities = 173/401 (43%), Positives = 235/401 (58%), Gaps = 6/401 (1%)
 Frame = +3

Query: 60   KPPKVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXX 239
            K P  TAL+WV +CCP+VP +L+QK+FRLRQV+                           
Sbjct: 71   KAPSTTALKWVLRCCPQVPRSLIQKLFRLRQVRKESLNPAIASCLHKQAQYQQIKRVFAK 130

Query: 240  EIMRPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSG 419
            + +  G +++L              E       +   M+YI SL +YKD  ++V+NKP G
Sbjct: 131  DTLNSGDRIFLPITVNPAV------EVEDDYICNKEEMEYIRSLEVYKDAAIVVVNKPPG 184

Query: 420  LPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFR 599
            LPVQGG G++ S+D L  ++L Y Y E PRLVHRLD+D SG+LVMGRT+ES +LLH++FR
Sbjct: 185  LPVQGGTGVKLSLDVLVASSLKYDYSEVPRLVHRLDQDSSGILVMGRTQESTTLLHSIFR 244

Query: 600  EKTEKFS-SEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHE 776
            +KT   S + D       LKR+YWALVIG     +G I APL+K++ DD  SERI ++ +
Sbjct: 245  DKTCGASFNVDIKNSKIILKRKYWALVIGNPQPSEGLISAPLSKLLLDDGKSERITVSED 304

Query: 777  KEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSA 956
             +  S + A+T++RV+  S +G TWLEL P TGRKHQ+RVHCAE LG PILGDYKYGW+A
Sbjct: 305  SKNKSARHAITEYRVLRSSGHGFTWLELYPRTGRKHQLRVHCAEVLGTPILGDYKYGWNA 364

Query: 957  HKKWRPFDPISKHIESELNAE-----ELNSGSVLSEEPLLHLHCRQISIPNITEAMNRPD 1121
            H+KW+PF  +    E  LN +     +L  GSV  ++P LHLHCRQ+++PN++ A     
Sbjct: 365  HRKWKPFPTLK--FEERLNRKAPFGLDLEGGSVSDKKPRLHLHCRQMTLPNMSLAFQH-- 420

Query: 1122 IXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYMS 1244
                                     VAPLP HM RSWD ++
Sbjct: 421  --------LHEQSVDDLSKLEKLDLVAPLPLHMRRSWDILN 453


>ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina]
            gi|557524859|gb|ESR36165.1| hypothetical protein
            CICLE_v10028283mg [Citrus clementina]
          Length = 494

 Score =  313 bits (802), Expect = 1e-82
 Identities = 168/401 (41%), Positives = 237/401 (59%), Gaps = 9/401 (2%)
 Frame = +3

Query: 69   KVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIM 248
            + TAL+WV +CCP +P   +QK+FRL QV+                           + +
Sbjct: 110  ETTALKWVLQCCPGLPRNFVQKLFRLSQVR-RESPSLDSSANEGHEQEIKLKRVAAKDSL 168

Query: 249  RPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPV 428
            + G +++L               + +        + +I+SL +YKD  +IV+NKP G+PV
Sbjct: 169  KLGDRIFLPISIQESP------SRKEKCPCTEEEVGFIQSLELYKDSAIIVINKPHGMPV 222

Query: 429  QGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKT 608
            QGG GI++SID LA   L+Y Y E PRLVHRLD+D SG+LVMGRT+ SA++LH++FREKT
Sbjct: 223  QGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKT 282

Query: 609  EKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGN 788
               S ED     + L+R YWALV+GT    +G I APL KVV D+  S+RI + +  +  
Sbjct: 283  FSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLRKVVVDNGKSDRITVVNNDQIM 342

Query: 789  STQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKW 968
            S Q AVT ++VI PS +G TWL+L P TGRKHQ+RVHCAE LG PI+GDYKYGW  H+KW
Sbjct: 343  SAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKW 402

Query: 969  RPFDP--ISKHIESELNAE-------ELNSGSVLSEEPLLHLHCRQISIPNITEAMNRPD 1121
            + F P  ++K    E   E       +L SGS+L ++P LHLHC+++++PN+++A+ +  
Sbjct: 403  KQFHPSDLNKDSNDETPKEKTLHFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQKVQ 462

Query: 1122 IXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYMS 1244
            +                      + VAPLPSHM RSWD ++
Sbjct: 463  LSSGCDVSKLESL----------KLVAPLPSHMQRSWDVLN 493


>gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score =  313 bits (801), Expect = 2e-82
 Identities = 173/400 (43%), Positives = 233/400 (58%), Gaps = 9/400 (2%)
 Frame = +3

Query: 60   KPPKVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXX 239
            K    TAL+WV +CCPE+P +L+QK+FRLRQV+                           
Sbjct: 83   KSAATTALKWVVRCCPELPRSLVQKLFRLRQVR-RESFNVEDCNAGDQLGKPRLRRVSAK 141

Query: 240  EIMRPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSG 419
            + +  G K++L              EK +    +   +K+I SL +YKDP ++V+NKP G
Sbjct: 142  DSLNLGDKIFLPISVKELPV-----EKKECF-CNEEEVKFIRSLELYKDPAIVVVNKPPG 195

Query: 420  LPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFR 599
            LPVQGG GI+ S+D LAV  LSY Y E PRLVHRLD+DCSG+LVMGRT+ SA++LH++FR
Sbjct: 196  LPVQGGIGIKTSLDQLAVTCLSYDYTEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFR 255

Query: 600  EKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEK 779
            EKT   S+++       L+RRYWA VIG+     G I APL KVV D+  S+RI + +  
Sbjct: 256  EKTFGASNDETVKGKIVLQRRYWAFVIGSPRHPNGLISAPLRKVVLDNGKSDRITVVNGS 315

Query: 780  EGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAH 959
               S+Q A+T ++VIG S +G TWLEL P TGRKHQ+RVHCAE LG P++GDYKYGW AH
Sbjct: 316  HTLSSQHAITKYKVIGSSSHGYTWLELSPLTGRKHQLRVHCAEVLGTPMVGDYKYGWQAH 375

Query: 960  KKWRPF---DPISKHIESELNAEEL------NSGSVLSEEPLLHLHCRQISIPNITEAMN 1112
            + W+P    DP +K IE     + L      ++GS+  + P LHLHC+Q+ +PNI+  + 
Sbjct: 376  RDWKPLHWPDPDNKCIEVLPKRKNLPFGLNMDNGSISEKHPRLHLHCKQMVLPNISHVLQ 435

Query: 1113 RPDIXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSW 1232
                                      +  APLPS+M RSW
Sbjct: 436  N----------VQRYSDYELSRLERLKLDAPLPSYMQRSW 465


>ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cicer
            arietinum]
          Length = 458

 Score =  312 bits (799), Expect = 3e-82
 Identities = 174/395 (44%), Positives = 235/395 (59%), Gaps = 8/395 (2%)
 Frame = +3

Query: 75   TALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRP 254
            TAL+WV +CCP++P  L+ K+FRLRQV++                          + +  
Sbjct: 80   TALKWVTQCCPQIPKTLVHKLFRLRQVRMLPNSPLIADKLKRVGAK---------DTLNS 130

Query: 255  GMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQG 434
            G +++L              +  Q L L  + +K++ SLVIYKDP  +VLNKP G+PVQG
Sbjct: 131  GDRIFLPNSVKQQHQHQQTPK--QPLTLTPKQIKFMRSLVIYKDPATVVLNKPPGMPVQG 188

Query: 435  GPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEK 614
            G  I+ S+D+LA ++L+Y Y + PRLVHRLD+DCSG+LVMGRT+ S  +LH++FR+KT +
Sbjct: 189  GINIKWSLDALAASSLNYDYSQPPRLVHRLDRDCSGILVMGRTQTSTVVLHSIFRDKTSR 248

Query: 615  FSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNST 794
             S  + T   + L+RRYWALVIG   +  G I +PL KVV D+  S+RI I +     S+
Sbjct: 249  ASDHNDTE-KRILQRRYWALVIGRPRRSGGLITSPLGKVVVDNGKSDRITIVNNSTLVSS 307

Query: 795  QDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRP 974
            Q AVT++RV+G S  G TWLEL P TGRKHQ+RVHCAE LG PI+GDYKYGW AHKKW  
Sbjct: 308  QHAVTEYRVLGSSSDGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKKWGH 367

Query: 975  FDPIS-KHIESELNAEE-------LNSGSVLSEEPLLHLHCRQISIPNITEAMNRPDIXX 1130
            FD  + +    EL  EE       LN GS+  + P LHLHC+QI +PNI++A+   D+  
Sbjct: 368  FDLCNLEDSTEELLKEETLPFGLNLNKGSISDKHPRLHLHCKQIILPNISQALQ--DVQS 425

Query: 1131 XXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWD 1235
                                +  A LP +M RSWD
Sbjct: 426  LSASNCDLSVVEAL------KLEAELPPYMQRSWD 454


>ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X2 [Glycine max]
          Length = 429

 Score =  311 bits (797), Expect = 5e-82
 Identities = 170/395 (43%), Positives = 228/395 (57%), Gaps = 8/395 (2%)
 Frame = +3

Query: 75   TALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRP 254
            TAL+WV +CCP +P AL+ K+FRLRQV++                           I+ P
Sbjct: 56   TALKWVVRCCPHLPRALVHKLFRLRQVRIHPATVIQQQTFKRVRVAAKDTLNTGDRILLP 115

Query: 255  GMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQG 434
                              + +      L  + + +I +LVIYKDP ++VLNKP G+PVQG
Sbjct: 116  --------------QSVKVKQTPTHSHLTPQQINFIRTLVIYKDPAILVLNKPPGMPVQG 161

Query: 435  GPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEK 614
            G  I++S+D++A A+L+YGY + PRLVHRLD+DCSG+LVMGRT  S ++LH++FREKT +
Sbjct: 162  GINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVMGRTHTSTTVLHSIFREKTSR 221

Query: 615  FSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNST 794
             +S+D     + L+RRYWALV+G   + +G + A L KVV D+  S+RI I       S+
Sbjct: 222  -ASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTLMSS 280

Query: 795  QDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRP 974
            Q A+T++RVI  S  G TWLEL P TGRKHQ+RVHCAE LG PI+GDYKYGW AH+KW  
Sbjct: 281  QHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGH 340

Query: 975  FD-PISKHIESELNAEE-------LNSGSVLSEEPLLHLHCRQISIPNITEAMNRPDIXX 1130
            FD P  +    EL  EE       LN GS+    P LHLHC+Q+ +PNI++A+       
Sbjct: 341  FDLPNVEDSREELLNEEKLPFGLNLNKGSISENHPRLHLHCKQMVLPNISQALQN----- 395

Query: 1131 XXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWD 1235
                                  VA LP +M RSWD
Sbjct: 396  -----VQSASSCDLSLVEELELVADLPPYMQRSWD 425


>ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Solanum
            tuberosum]
          Length = 467

 Score =  311 bits (796), Expect = 6e-82
 Identities = 171/412 (41%), Positives = 241/412 (58%), Gaps = 9/412 (2%)
 Frame = +3

Query: 36   IERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXX 215
            ++   +++    +TAL+WV +CCPE+P +L+QK+FRLRQV+                   
Sbjct: 80   VKMDVKENSTNTMTALKWVQRCCPELPKSLVQKLFRLRQVR----------RDSSNVEEQ 129

Query: 216  XXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQL 395
                    E M  G +++L             SEK           K++ SL +YKDP++
Sbjct: 130  RPKRVSAKESMNVGDRIFLPITVQKFP-----SEKVVYYPSSEEERKFVHSLELYKDPEI 184

Query: 396  IVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESA 575
            +V+NKP G+PVQGG GI++S+D LA   + + Y E PRLVHRLD+DCSG+LVMGRT+ SA
Sbjct: 185  VVVNKPPGMPVQGGIGIKRSLDELAAKYMRHEYSEAPRLVHRLDRDCSGLLVMGRTQLSA 244

Query: 576  SLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSE 755
            S LH++FREKT    +ED     + L+++YWALVIG   +  G I APL K+V D+  SE
Sbjct: 245  SALHSIFREKTFDSQNEDLESKKRILQKKYWALVIGCPRRSGGIISAPLGKLVLDNGKSE 304

Query: 756  RILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGD 935
            RI I  +    S Q AVT++R+IG S  G TWLEL P TGRKHQ+RVHCAEALG PI+GD
Sbjct: 305  RITIMSDVRAPSAQYAVTEYRIIGSSEKGYTWLELSPLTGRKHQLRVHCAEALGTPIVGD 364

Query: 936  YKYGWSAHKKWR--PFDPISKHIESELNAEE-------LNSGSVLSEEPLLHLHCRQISI 1088
            YKYGW AH+K +  P      ++  ++  ++       L +GS+  ++P LHLHC+++ +
Sbjct: 365  YKYGWQAHRKLKHLPLPTSVLNLGVQIPRQKPDPFNLRLGNGSISDKQPHLHLHCKEMVL 424

Query: 1089 PNITEAMNRPDIXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYMS 1244
            PNI+ A+ R  +                      + VAPLP HM +SWD +S
Sbjct: 425  PNISLALQRAQVVSDTDLVDVESI----------KLVAPLPFHMQKSWDCLS 466


>ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum
            lycopersicum]
          Length = 467

 Score =  310 bits (794), Expect = 1e-81
 Identities = 173/400 (43%), Positives = 236/400 (59%), Gaps = 9/400 (2%)
 Frame = +3

Query: 72   VTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMR 251
            +TAL+WV +CCPE+P +L+QK+FRLRQV+                           E M 
Sbjct: 92   MTALKWVQRCCPELPKSLVQKLFRLRQVR----------RDSSNVEEQRPKRVSAKESMN 141

Query: 252  PGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQ 431
             G +++L             SEK           K++ SL +YKD ++IV+NKP G+PVQ
Sbjct: 142  VGDRIFLPITVQKFP-----SEKVVYYPSSEEERKFVHSLELYKDAEIIVVNKPPGMPVQ 196

Query: 432  GGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTE 611
            GG GI++S+D LA   +S+ Y E PRLVHRLD+DCSG+LVMGRT+ SAS LH++FREKT 
Sbjct: 197  GGIGIKRSLDELAAKYMSHQYSEAPRLVHRLDRDCSGLLVMGRTQLSASALHSIFREKTF 256

Query: 612  KFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNS 791
               +ED     + L+++YWALVIG   +  G I APL K+V D+  SERI I  +    S
Sbjct: 257  DSQNEDLESKKRILQKKYWALVIGCPRRSGGIISAPLGKLVLDNGKSERITIMSDVREPS 316

Query: 792  TQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWR 971
             Q AVT++R+IG S  G TWLEL P TGRKHQ+RVHCAEALG PI+GDYKYGW AH+K +
Sbjct: 317  AQYAVTEYRIIGSSEKGYTWLELSPLTGRKHQLRVHCAEALGTPIVGDYKYGWQAHRKLK 376

Query: 972  --PFDPISKHIESELNAEE-------LNSGSVLSEEPLLHLHCRQISIPNITEAMNRPDI 1124
              P      ++  E+  ++       L +GS+  ++P LHLHC+++ +PNI+ A+ R  +
Sbjct: 377  HLPLPTSVLNLVVEIPRQKPDPFNLRLGNGSISDKQPHLHLHCKEMVLPNISLALQRAQV 436

Query: 1125 XXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYMS 1244
                                  + VAPLP HM +SWD +S
Sbjct: 437  VSDADLVDVESI----------KLVAPLPFHMQKSWDCLS 466


>ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X1 [Glycine max]
          Length = 427

 Score =  310 bits (793), Expect = 1e-81
 Identities = 170/395 (43%), Positives = 231/395 (58%), Gaps = 8/395 (2%)
 Frame = +3

Query: 75   TALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRP 254
            TAL+WV +CCP +P AL+ K+FRLRQV++                          + +  
Sbjct: 56   TALKWVVRCCPHLPRALVHKLFRLRQVRIHPATVIQQQTFKRVAAK---------DTLNT 106

Query: 255  GMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQG 434
            G ++ L            + +      L  + + +I +LVIYKDP ++VLNKP G+PVQG
Sbjct: 107  GDRILLPQSVK-------VKQTPTHSHLTPQQINFIRTLVIYKDPAILVLNKPPGMPVQG 159

Query: 435  GPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEK 614
            G  I++S+D++A A+L+YGY + PRLVHRLD+DCSG+LVMGRT  S ++LH++FREKT +
Sbjct: 160  GINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVMGRTHTSTTVLHSIFREKTSR 219

Query: 615  FSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNST 794
             +S+D     + L+RRYWALV+G   + +G + A L KVV D+  S+RI I       S+
Sbjct: 220  -ASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTLMSS 278

Query: 795  QDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRP 974
            Q A+T++RVI  S  G TWLEL P TGRKHQ+RVHCAE LG PI+GDYKYGW AH+KW  
Sbjct: 279  QHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGH 338

Query: 975  FD-PISKHIESELNAEE-------LNSGSVLSEEPLLHLHCRQISIPNITEAMNRPDIXX 1130
            FD P  +    EL  EE       LN GS+    P LHLHC+Q+ +PNI++A+       
Sbjct: 339  FDLPNVEDSREELLNEEKLPFGLNLNKGSISENHPRLHLHCKQMVLPNISQALQN----- 393

Query: 1131 XXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWD 1235
                                  VA LP +M RSWD
Sbjct: 394  -----VQSASSCDLSLVEELELVADLPPYMQRSWD 423


>gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
          Length = 477

 Score =  309 bits (791), Expect = 2e-81
 Identities = 167/403 (41%), Positives = 235/403 (58%), Gaps = 11/403 (2%)
 Frame = +3

Query: 69   KVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIM 248
            + TA++WV +CCPE+P +L+QK+FRLRQV+                           ++ 
Sbjct: 93   ETTAVKWVMRCCPELPRSLVQKLFRLRQVR---------RESHVLEVAGDGCQVQTVQLK 143

Query: 249  RPGMK--LYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGL 422
            R G K  L +              E+ Q        + +I  L +YKDP +IVLNKP G+
Sbjct: 144  RVGAKDALNIGDRIFLPFSVREFREEKQESGCTEEELNFIRGLELYKDPAIIVLNKPPGM 203

Query: 423  PVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFRE 602
            PVQGG GI+ S+D LA A L + Y E PRLVHRLD+D SG+LVMGRT+ SA++LH++FRE
Sbjct: 204  PVQGGIGIKWSLDKLAAACLCFDYSEPPRLVHRLDRDSSGILVMGRTQMSATILHSVFRE 263

Query: 603  KTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKE 782
            +T   S +D     + L++RYWALVIG+  + +G I+APL KVV DD  S+RI +    +
Sbjct: 264  ETNDASKDDVDNEKRILQKRYWALVIGSPRRPKGMIVAPLRKVVVDDGKSDRITVFDNSQ 323

Query: 783  GNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHK 962
              S+Q A T+++VI  + +G TWLEL P TGRKHQ+RVHCAE LG PI+GDYKYGW AH+
Sbjct: 324  IVSSQRAKTEYQVIKTTSHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHR 383

Query: 963  KWR--PFDPISKHIESELNAE-------ELNSGSVLSEEPLLHLHCRQISIPNITEAMNR 1115
            +W+  P   + K    +   E        ++SGS+ ++ P LHLHCR++  PN+++A+  
Sbjct: 384  RWQHLPESDLKKSSNDKCPEENMLPFGLNMDSGSISAKRPRLHLHCREMIFPNVSQALQN 443

Query: 1116 PDIXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYMS 1244
              +                        VAPLPS+M +SWD M+
Sbjct: 444  LQLSTDHDLSKLKSL----------EVVAPLPSYMQKSWDIMN 476


>ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatula]
            gi|355501934|gb|AES83137.1| RNA pseudourine synthase
            [Medicago truncatula]
          Length = 430

 Score =  308 bits (789), Expect = 4e-81
 Identities = 164/353 (46%), Positives = 219/353 (62%), Gaps = 9/353 (2%)
 Frame = +3

Query: 78   ALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRPG 257
            AL+WV +CCPE+P  L+ K+FRL+QV++                          + +  G
Sbjct: 50   ALKWVIRCCPELPKTLIHKLFRLKQVRMLPRQQDDNKFKRVTPK----------DTLNSG 99

Query: 258  MKLYLXXXXXXXXXXXXMSEKAQS-LRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQG 434
             +++L               K +S L L  + + +I SLVIYKDP ++VLNKP G+PVQG
Sbjct: 100  DRIFLPNSVKQQIPLTPTPPKHESPLTLTAKQINFIRSLVIYKDPHILVLNKPPGMPVQG 159

Query: 435  GPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEK 614
            G  I+ S+D++A  +L+Y Y + PRLVHRLD+DCSG+LVMGRTK S +LLH++FREKT +
Sbjct: 160  GINIKLSLDAVAAQSLNYDYSQPPRLVHRLDRDCSGILVMGRTKTSTALLHSIFREKTSR 219

Query: 615  FSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNST 794
             S+E+       L+RRYWALV+G   +  G + APL KVV D+  S+RI I       S+
Sbjct: 220  ASNEENDTEKIILQRRYWALVLGCPRRSGGVVNAPLGKVVVDNGKSDRITIVDNSALLSS 279

Query: 795  QDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRP 974
            Q AVT++RVI  S +G TWLEL P TGRKHQ+RVHCAE LG PI+GDYKYG  AHKKW  
Sbjct: 280  QHAVTEYRVISSSSHGFTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHKKWGQ 339

Query: 975  FD--PISKHIESELNAE------ELNSGSVLSEEPLLHLHCRQISIPNITEAM 1109
            FD   +    E  L  E       LN GS+  + P LHLHC+QI +PNI++A+
Sbjct: 340  FDFSNLEDSTEEHLKEEALPFGLNLNKGSISDKHPRLHLHCKQIVLPNISQAL 392


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
            sativus]
          Length = 471

 Score =  307 bits (786), Expect = 9e-81
 Identities = 167/399 (41%), Positives = 237/399 (59%), Gaps = 8/399 (2%)
 Frame = +3

Query: 72   VTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMR 251
            +TAL+WV +CCPE+P +L+QK+FRLR  KV                          +I+ 
Sbjct: 95   ITALKWVIRCCPELPRSLVQKLFRLR--KVRRGSSMIENSEYNLEARDQLKRVAAKDILN 152

Query: 252  PGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQ 431
             G +++L             +EK +    +     ++ SLV++KDP ++V+NKP GLPVQ
Sbjct: 153  VGDQIFLPMSVQVFS-----TEKTRDY-CNKEEETFMHSLVLHKDPAILVINKPPGLPVQ 206

Query: 432  GGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTE 611
            GG G+++S+D LA + LSYGY E PRLVHRLD+D SG+L+MGRT  S SLLH++FREKT 
Sbjct: 207  GGIGVKRSLDELAASCLSYGYSEPPRLVHRLDRDSSGILIMGRTSTSTSLLHSVFREKTF 266

Query: 612  KFSSEDPTMFGQK--LKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEG 785
            + S     +  +K  L +RYWALVIG+  + +G I APL K+V DD  SE+I++    E 
Sbjct: 267  EASKHANHVDSEKKILLKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEP 326

Query: 786  NSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKK 965
               Q A+T ++VI  S +G TWLELCP TGRKHQ+RVHCAE LG PI+GDYKYGW AHK 
Sbjct: 327  MPFQQAITQYKVI-KSHHGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKN 385

Query: 966  WRPFDPISKHIESELNAE------ELNSGSVLSEEPLLHLHCRQISIPNITEAMNRPDIX 1127
            W+PF   S   +++   +      +  SGS+    P LHLHC+Q+++P+++ A++   + 
Sbjct: 386  WKPF--CSNFHKNQGKKQFLPFGLDFESGSIAENSPRLHLHCKQLTLPDVSFALHNDSLD 443

Query: 1128 XXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYMS 1244
                                    APLPS+M +SWD ++
Sbjct: 444  RDCSRLECL------------ELDAPLPSYMQKSWDIIN 470


>ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
            sativus]
          Length = 466

 Score =  305 bits (782), Expect = 3e-80
 Identities = 166/399 (41%), Positives = 237/399 (59%), Gaps = 8/399 (2%)
 Frame = +3

Query: 72   VTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMR 251
            +TAL+WV +CCPE+P +L+QK+FRLR+V                            +I+ 
Sbjct: 95   ITALKWVIRCCPELPRSLVQKLFRLRKVP-------RQLNVGCGNSHHQLKRVAAKDILN 147

Query: 252  PGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQ 431
             G +++L             +EK +    +     ++ SLV++KDP ++V+NKP GLPVQ
Sbjct: 148  VGDQIFLPMSVQVFS-----TEKTRDY-CNKEEETFMHSLVLHKDPAILVINKPPGLPVQ 201

Query: 432  GGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTE 611
            GG G+++S+D LA + LSYGY E PRLVHRLD+D SG+L+MGRT  S SLLH++FREKT 
Sbjct: 202  GGIGVKRSLDELAASCLSYGYSEPPRLVHRLDRDSSGILIMGRTSTSTSLLHSVFREKTF 261

Query: 612  KFSSEDPTMFGQK--LKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEG 785
            + S     +  +K  L +RYWALVIG+  + +G I APL K+V DD  SE+I++    E 
Sbjct: 262  EASKHANHVDSEKKILLKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEP 321

Query: 786  NSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKK 965
               Q A+T ++VI  S +G TWLELCP TGRKHQ+RVHCAE LG PI+GDYKYGW AHK 
Sbjct: 322  MPFQQAITQYKVI-KSHHGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKN 380

Query: 966  WRPFDPISKHIESELNAE------ELNSGSVLSEEPLLHLHCRQISIPNITEAMNRPDIX 1127
            W+PF   S   +++   +      +  SGS+    P LHLHC+Q+++P+++ A++   + 
Sbjct: 381  WKPF--CSNFHKNQGKKQFLPFGLDFESGSIAENNPRLHLHCKQLTLPDVSFALHNDSLD 438

Query: 1128 XXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYMS 1244
                                    APLPS+M +SWD ++
Sbjct: 439  RDCSRLECL------------ELDAPLPSYMQKSWDIIN 465


>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
            gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
            pseudouridine synthase 4, mitochondrial; AltName:
            Full=RNA pseudouridylate synthase 4; AltName:
            Full=RNA-uridine isomerase 4; Flags: Precursor
            gi|11994467|dbj|BAB02469.1| unnamed protein product
            [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis
            thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine
            synthase 4 [Arabidopsis thaliana]
          Length = 477

 Score =  305 bits (780), Expect = 5e-80
 Identities = 174/416 (41%), Positives = 242/416 (58%), Gaps = 3/416 (0%)
 Frame = +3

Query: 3    LGKNLMEDNFPIERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXX 182
            +GK+L+ D   ++ S    K    TALRW+ +C P++P  L+QK+FRLRQV+        
Sbjct: 70   VGKDLLSDGDSVKSSTDNSK---TTALRWILRCRPDLPRTLVQKLFRLRQVR----REMS 122

Query: 183  XXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYI 362
                               E +  G ++YL             ++K +S +      K++
Sbjct: 123  MSVDGDELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPQTPPAKK-ESFQCSDEERKFV 181

Query: 363  ESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSG 542
             SLV+YKDP +IVLNKP GL VQGG GI+ SID LA + L +   E PRLVHRLD+DCSG
Sbjct: 182  CSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAASCLKFDKSESPRLVHRLDRDCSG 241

Query: 543  VLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPL 722
            +LV+ RT+ +A++LH++FREKT   S+       + LKR+Y ALVIG   +++G+I APL
Sbjct: 242  LLVLARTQTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQRGQISAPL 301

Query: 723  TKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHC 902
             KVV DD  SERI +    E  STQ A+T++RVI  S +G TWLEL P TGRKHQ+RVHC
Sbjct: 302  RKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHC 361

Query: 903  AEALGMPILGDYKYGWSAHKKWRPFDPISKHIESELNAE---ELNSGSVLSEEPLLHLHC 1073
            AE LG PI+GDYKYGW AHK   PF     +   + ++    +L+ G V S++P LHLH 
Sbjct: 362  AEVLGTPIVGDYKYGWQAHKAREPFVSSENNPTKQSSSPFGLDLDGGDVSSKQPHLHLHS 421

Query: 1074 RQISIPNITEAMNRPDIXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYM 1241
            +QI +PNI++ + +  +                      +F APLPSHM  S++ +
Sbjct: 422  KQIDLPNISQLLEKMQVSSDSDISDLDSL----------KFDAPLPSHMQLSFNLL 467


>gb|ESW29223.1| hypothetical protein PHAVU_002G053600g [Phaseolus vulgaris]
          Length = 432

 Score =  303 bits (777), Expect = 1e-79
 Identities = 167/398 (41%), Positives = 225/398 (56%), Gaps = 8/398 (2%)
 Frame = +3

Query: 75   TALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRP 254
            TAL+W+ +CCP  P +LL K+FRLRQV+V                          + +  
Sbjct: 60   TALKWIVRCCPSAPISLLHKLFRLRQVRVLSPPHTETLKRVAAK-----------DTLNS 108

Query: 255  GMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQG 434
            G ++ L                +    L  + + +I +LVI+KDP ++VLNKP G+PVQG
Sbjct: 109  GDRILLPQSVQQKPTPTRKPHSS----LTPQQINFIRTLVIHKDPAILVLNKPPGMPVQG 164

Query: 435  GPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEK 614
            G  I+ S+D +A A L+Y Y E PRLVHRLD+DCSG+LVMGRT+ S ++LH++FREKT +
Sbjct: 165  GINIKHSLDVVAAACLNYEYSEPPRLVHRLDRDCSGILVMGRTQTSTTVLHSIFREKTSR 224

Query: 615  FSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNST 794
             + +D     + L+RRYWALV+G     +G + A L KVV D+  S+RI +       S+
Sbjct: 225  -ALDDTEEEKRILQRRYWALVLGRPRCSKGLVTASLGKVVVDNGKSDRITVVDNSTSLSS 283

Query: 795  QDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRP 974
            Q A+T++RVI  S  G TWLEL P TGRKHQ+RVHCAE LG PI+GDYKYGW AH+KW  
Sbjct: 284  QHAITEYRVIASSSQGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGN 343

Query: 975  FD--PISKHIESELNAE------ELNSGSVLSEEPLLHLHCRQISIPNITEAMNRPDIXX 1130
            FD   +    E  L  E       LN+GS+    P LHLHC++I +PNI+EA+       
Sbjct: 344  FDLSNVEDSCEEHLKEETLPFGLNLNNGSISENRPRLHLHCKKIVLPNISEALQN----- 398

Query: 1131 XXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYMS 1244
                                + VA LP +M RSWD  S
Sbjct: 399  -----VQSFSNCDLSQVEGLQLVADLPPYMQRSWDITS 431


>gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
          Length = 483

 Score =  303 bits (776), Expect = 1e-79
 Identities = 168/400 (42%), Positives = 230/400 (57%), Gaps = 13/400 (3%)
 Frame = +3

Query: 75   TALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRP 254
            TAL+WV +CCPE+P +L+QK+FRLRQV+                           + M  
Sbjct: 94   TALKWVTRCCPELPRSLVQKLFRLRQVR-RESCDMECSGEGVEALERPLKRVAAKDSMNV 152

Query: 255  GMKLYLXXXXXXXXXXXX-MSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQ 431
            G +++L             +    +        + +I SL +YKDP +IV+NKP G+PVQ
Sbjct: 153  GDRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQ 212

Query: 432  GGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTE 611
            GG GI++S+D LA A LSY + E PRLVHRLD+D SG+LVMGRT+ SA++LH++FREKT 
Sbjct: 213  GGIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTF 272

Query: 612  KFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNS 791
              S+++     + L+RRYWALVIG+  Q++G I APL KVV D+  S+RI I ++ +   
Sbjct: 273  GASNDEIDDAKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLP 332

Query: 792  TQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWR 971
            +Q A+T ++VIG    G TWLEL P TGRKHQ+RVHCAE L  PI+GDYKYGW  H+ W+
Sbjct: 333  SQHAITKYKVIGSPCPGYTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWK 392

Query: 972  PFD------------PISKHIESELNAEELNSGSVLSEEPLLHLHCRQISIPNITEAMNR 1115
            P              P  K++  +LN E   SGSV  + P LHLHC+Q+ +PN+  A+  
Sbjct: 393  PLAWSNNECHSDEEFPKRKNLPFDLNME---SGSVSEKNPRLHLHCKQMVLPNVNLALQN 449

Query: 1116 PDIXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWD 1235
              +                        VA LPS M RSW+
Sbjct: 450  VKLHSDSDLSELESL----------ELVAALPSFMQRSWN 479


>ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297329022|gb|EFH59441.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 477

 Score =  301 bits (772), Expect = 4e-79
 Identities = 174/416 (41%), Positives = 240/416 (57%), Gaps = 3/416 (0%)
 Frame = +3

Query: 3    LGKNLMEDNFPIERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXX 182
            +GK+L+ D   ++ S    K    TALRW+ +C P++P  L+QK+FRLRQV+        
Sbjct: 70   VGKDLLSDGDSVKASTDNSK---TTALRWILRCRPDLPRTLVQKLFRLRQVR----RQMS 122

Query: 183  XXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYI 362
                               E +  G ++YL             ++K +S +      K++
Sbjct: 123  LSVDGHELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPPTPPAKK-ESFQCSEEERKFV 181

Query: 363  ESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSG 542
             SLV+YKDP +IVLNKP GL VQGG GI+ SID LA   L++   E PRLVHRLD+DCSG
Sbjct: 182  CSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAATCLTFDKSESPRLVHRLDRDCSG 241

Query: 543  VLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPL 722
            +LV+ RT+ +A++LH++FREKT   S+       + LKR+Y ALVIG   +++G+I APL
Sbjct: 242  LLVLARTQTAATVLHSIFREKTCGASAYGVKKNIKSLKRKYMALVIGCPRRQKGQISAPL 301

Query: 723  TKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHC 902
             KVV DD  S+RI +    E  STQ A+T+++VI  S +G TWLEL P TGRKHQ+RVHC
Sbjct: 302  RKVVVDDGKSDRITVNDNGELVSTQHAITEYKVIESSPHGYTWLELRPLTGRKHQLRVHC 361

Query: 903  AEALGMPILGDYKYGWSAHKKWRPF---DPISKHIESELNAEELNSGSVLSEEPLLHLHC 1073
            AE LG PILGDYKYGW AHK   PF   +       S     +L+ G V S++P LHLH 
Sbjct: 362  AEVLGTPILGDYKYGWQAHKAREPFVSSETTPTKPSSSPFGLDLDGGDVSSKQPHLHLHS 421

Query: 1074 RQISIPNITEAMNRPDIXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYM 1241
            +QI +PNI++ + +  +                      +F APLPSHM  S++ +
Sbjct: 422  KQIDLPNISQLLEKMQVSSDSDISDLDSL----------KFDAPLPSHMQLSFNLL 467


>ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X1 [Citrus sinensis] gi|568867349|ref|XP_006487000.1|
            PREDICTED: RNA pseudouridine synthase 4,
            mitochondrial-like isoform X2 [Citrus sinensis]
          Length = 362

 Score =  300 bits (769), Expect = 9e-79
 Identities = 151/307 (49%), Positives = 206/307 (67%), Gaps = 9/307 (2%)
 Frame = +3

Query: 351  MKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDK 530
            +++I+SL +YKD  +IV+NKP G+PVQGG GI++SID LA   L+Y Y E PRLVHRLD+
Sbjct: 65   VEFIQSLELYKDSAIIVINKPHGMPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDR 124

Query: 531  DCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRI 710
            D SG+LVMGRT+ SA++LH++FREKT   S ED     + L+R YWALV+GT    +G I
Sbjct: 125  DSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKKILQRWYWALVVGTPRCSKGVI 184

Query: 711  IAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQV 890
             APL KVV D+  S+RI + +  +  S Q AVT ++VI PS +G TWL+L P TGRKHQ+
Sbjct: 185  SAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQL 244

Query: 891  RVHCAEALGMPILGDYKYGWSAHKKWRPFDP--ISKHIESELNAE-------ELNSGSVL 1043
            RVHCAE LG PI+GDYKYGW  H+KW+ F P  +SK    E+  E       +L SGS+L
Sbjct: 245  RVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSIL 304

Query: 1044 SEEPLLHLHCRQISIPNITEAMNRPDIXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMS 1223
             ++P LHLHC+++++PN+++A+ +  +                      + VAPLPSHM 
Sbjct: 305  EKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETL----------KLVAPLPSHMQ 354

Query: 1224 RSWDYMS 1244
            RSWD ++
Sbjct: 355  RSWDVLN 361


>gb|EMJ01008.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
          Length = 481

 Score =  300 bits (769), Expect = 9e-79
 Identities = 168/400 (42%), Positives = 230/400 (57%), Gaps = 13/400 (3%)
 Frame = +3

Query: 75   TALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXXXXXXXXXXXXXXXXXXXXXEIMRP 254
            TAL+WV +CCPE+P +L+QK+FRLRQV+                           + M  
Sbjct: 94   TALKWVTRCCPELPRSLVQKLFRLRQVR-RESCDMECSGEGVEALERPLKRVAAKDSMNV 152

Query: 255  GMKLYLXXXXXXXXXXXX-MSEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQ 431
            G +++L             +    +        + +I SL +YKDP +IV+NKP G+PVQ
Sbjct: 153  GDRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQ 212

Query: 432  GGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTE 611
            GG GI++S+D LA A LSY + E PRLVHRLD+D SG+LVMGRT+ SA++LH++FREKT 
Sbjct: 213  GGIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTF 272

Query: 612  KFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNS 791
              S+++     + L+RRYWALVIG+  Q++G I APL KVV D+  S+RI I ++ +   
Sbjct: 273  GASNDEIDDAKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLP 332

Query: 792  TQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWR 971
            +Q A+T ++VIG   Y  TWLEL P TGRKHQ+RVHCAE L  PI+GDYKYGW  H+ W+
Sbjct: 333  SQHAITKYKVIGSPCY--TWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWK 390

Query: 972  PFD------------PISKHIESELNAEELNSGSVLSEEPLLHLHCRQISIPNITEAMNR 1115
            P              P  K++  +LN E   SGSV  + P LHLHC+Q+ +PN+  A+  
Sbjct: 391  PLAWSNNECHSDEEFPKRKNLPFDLNME---SGSVSEKNPRLHLHCKQMVLPNVNLALQN 447

Query: 1116 PDIXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWD 1235
              +                        VA LPS M RSW+
Sbjct: 448  VKLHSDSDLSELESL----------ELVAALPSFMQRSWN 477


>ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutrema salsugineum]
            gi|557107647|gb|ESQ47954.1| hypothetical protein
            EUTSA_v10020633mg [Eutrema salsugineum]
          Length = 477

 Score =  300 bits (768), Expect = 1e-78
 Identities = 176/417 (42%), Positives = 239/417 (57%), Gaps = 4/417 (0%)
 Frame = +3

Query: 3    LGKNLMEDNFPIERSKRKHKPPKVTALRWVAKCCPEVPFALLQKMFRLRQVKVXXXXXXX 182
            +GK L  D   ++ S         TALRW+ +C P++P  L+QK+FRLRQV+        
Sbjct: 73   VGKELFSDGDSVKASS----DGSTTALRWILRCRPDLPRTLVQKLFRLRQVR----REMS 124

Query: 183  XXXXXXXXXXXXXXXXXXXEIMRPGMKLYLXXXXXXXXXXXXMSEKAQSLRLDTRTMKYI 362
                               E +  G ++YL               K +S        K++
Sbjct: 125  LSCDGDELQRSQLKRVAAKESLNLGDRIYLPLSVNNDAPPPA---KKESFCCSEEERKFV 181

Query: 363  ESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSG 542
             SLV+YKDP +IVLNKP GL VQGG GI+ SID LA   L++G  E PRLVHRLD+DCSG
Sbjct: 182  CSLVLYKDPAIIVLNKPHGLAVQGGTGIKISIDELAATCLTFGKSESPRLVHRLDRDCSG 241

Query: 543  VLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPL 722
            +LV+GRT+ +A++LH++FREKT   S+       + LKR+Y ALVIG   +++G+I APL
Sbjct: 242  LLVLGRTQTAATVLHSIFREKTSGASAYSVKKNIKSLKRKYLALVIGCPRRQRGQISAPL 301

Query: 723  TKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHC 902
             KVV DD  S+RI +    E  STQ A+T++RVI  S +G TWLEL P TGRKHQ+RVHC
Sbjct: 302  RKVVVDDGKSDRITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHC 361

Query: 903  AEALGMPILGDYKYGWSAHKKWRPF----DPISKHIESELNAEELNSGSVLSEEPLLHLH 1070
            AE LG PILGDYKYGW AHK   PF    +  +K   S     +L+ G V S++P LHLH
Sbjct: 362  AEVLGTPILGDYKYGWQAHKSREPFVSSGNTPTKPSLSPFGL-DLDGGDVSSKQPHLHLH 420

Query: 1071 CRQISIPNITEAMNRPDIXXXXXXXXXXXXXXXXXXXXXQRFVAPLPSHMSRSWDYM 1241
             +QI +PNI++ + + ++                      +F APLP+HM  S++ +
Sbjct: 421  SKQIDLPNISQLLEQLEVSSDSDSSEHDCL----------KFDAPLPAHMQLSFNLL 467