BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00024255
         (1502 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA31653.1| polyprotein [Arabidopsis thaliana]                    267   e-103
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot...   261   e-100
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   315   9e-84
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc...   293   7e-77
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   293   9e-77
emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]         293   2e-76
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     288   1e-75
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   288   2e-75
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     288   2e-75
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     288   2e-75
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]         287   7e-75
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     285   2e-74
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   286   2e-74
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     285   3e-74
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           276   1e-72
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   277   1e-72
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   276   1e-72
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   276   1e-72
emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]   280   1e-72
ref|XP_005717320.1| Retrovirus-related Gag-Pol polyprotein [Chon...   192   5e-72

>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
          Length = 1291

 Score =  267 bits (683), Expect(2) = e-103
 Identities = 153/333 (45%), Positives = 207/333 (62%), Gaps = 9/333 (2%)
 Frame = +3

Query: 501  SSSSNIRAESSLQDKTVIEIHDDVEAEFETDGIKFKVETPIXXXXXXXXXXXXXXPSLAE 680
            S+   ++   +L    VI++ D+ E++ E+   + + ET +                LA 
Sbjct: 755  STLIKVKTPGNLNSGEVIQVSDEEESD-ESVEEEQEPETQVELPETQTTSSLANY-QLAR 812

Query: 681  RHERRSMRPPTRYGYEEHATCVFIAYDE---DEPTSYRAAVSSSHSIEWKQAMGEEMQSL 851
              ERR + PP R+  E       +  +    +EP SY+ A S     +WK A  EEM SL
Sbjct: 813  DRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLATHEEMDSL 872

Query: 852  HKNDTWELVKVPKGKKATGCKWVFTVKDRISGSRGIVDSVWYKARLVAKGYAQKEGVEYN 1031
             KN TW LV  P+ +K  GC+W+F +K   SGS G V+ V YKA+LVAKGY  +EGV+Y 
Sbjct: 873  IKNGTWVLVDKPQNRKIIGCRWLFKLK---SGSPG-VEPVRYKAQLVAKGYTHREGVDYQ 928

Query: 1032 EFFSLVVKHTSIRTLLALVS*FDMELEQMDVKTAFLHGDLEENIYMSQPDGYVVVGKEDY 1211
            E F+LVVKHTSIR L+++V   D+ELEQMDVKTAFLHG+LEE +YM QP+G +    E+ 
Sbjct: 929  EIFALVVKHTSIRILMSVVVDQDLELEQMDVKTAFLHGELEEELYMEQPEGCISEDGENK 988

Query: 1212 VCKLKKSLYGLKQSPR*WYLRFDK------FTRSDYDHCVYFRKLNDDSFIYLLPYVDDM 1373
            VC LKKSLYGLKQSPR W  RF++      F RS++D CVY +++++   +YLL YVDDM
Sbjct: 989  VCLLKKSLYGLKQSPRQWNKRFNRFMIDQNFIRSEHDACVYVKQVSEQEHLYLLLYVDDM 1048

Query: 1374 LIASRSKREIDLLQIQLSKEFEMKDLGQLRRYL 1472
            LIA +SK EI+ ++ QLS EFEMKD+G   R L
Sbjct: 1049 LIAGKSKSEINKVKEQLSMEFEMKDMGPASRIL 1081



 Score =  136 bits (343), Expect(2) = e-103
 Identities = 64/128 (50%), Positives = 86/128 (67%)
 Frame = +1

Query: 1   PQQNGVAERMNRTLLERAQCMRSNAGLSRYWWAEAVNTTCYLINRSPSTAIRFKTPMEVW 180
           PQQNGVAERMNRT++E+ +CM + +GL   +WAEA  T  YLINRSP++AI    P E+W
Sbjct: 605 PQQNGVAERMNRTIMEKVRCMLNESGLGEEFWAEAAATAAYLINRSPASAIDHNVPEELW 664

Query: 181 IGTPST*SHLRIFGCPAYFHVREDKITVRAKKAIFLGYLEGMKGYQLWCPEEKKIAVSRD 360
           +       HLR FG  AY H+ + K+  RA K IF+GY  G KGY++W  EE K  +SR+
Sbjct: 665 LNKKPGYKHLRRFGSIAYVHIDQGKLKPRALKGIFIGYPAGTKGYKIWLLEEHKCVISRN 724

Query: 361 VTFDEKAM 384
           V F E+++
Sbjct: 725 VLFHEESV 732


>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
            (strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
            unnamed protein product [Arabidopsis thaliana]
          Length = 1084

 Score =  261 bits (667), Expect(2) = e-100
 Identities = 149/333 (44%), Positives = 196/333 (58%), Gaps = 9/333 (2%)
 Frame = +3

Query: 501  SSSSNIRAESSLQDKTVIEIHDDVEAEFETDGIKFKVETPIXXXXXXXXXXXXXXPSLAE 680
            S+   ++   +L    VI++ D+ E++   D  + +   P                 L  
Sbjct: 655  STLIKMKTPGNLNSGGVIQVSDEEESDESVD--EEQEPEPQVELPETQTTSSLANYQLVR 712

Query: 681  RHERRSMRPPTRYGYEEHATCVFIAYDE---DEPTSYRAAVSSSHSIEWKQAMGEEMQSL 851
              ERR + PP R+  E       +  +    +EP SY+ A S     +WK A  EE  SL
Sbjct: 713  DRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLATHEEKNSL 772

Query: 852  HKNDTWELVKVPKGKKATGCKWVFTVKDRISGSRGIVDSVWYKARLVAKGYAQKEGVEYN 1031
             KN TW LV  PK +K  GC+W+F +K  I G    V+ V YKARLVAKGY Q+EGV+Y 
Sbjct: 773  IKNGTWVLVDKPKDRKIIGCRWLFKMKSGIPG----VEPVRYKARLVAKGYTQREGVDYQ 828

Query: 1032 EFFSLVVKHTSIRTLLALVS*FDMELEQMDVKTAFLHGDLEENIYMSQPDGYVVVGKEDY 1211
            E F+ V KHTSIR L+++V   D+ELEQMDVKT FLHG+LEE +YM QPDG++    E+ 
Sbjct: 829  EIFAPVAKHTSIRILMSVVVDQDLELEQMDVKTTFLHGELEEELYMEQPDGFISEDGENK 888

Query: 1212 VCKLKKSLYGLKQSPR*WYLRFDK------FTRSDYDHCVYFRKLNDDSFIYLLPYVDDM 1373
            VC LKKSLYGLKQSPR W  RF +      F RS++D CVY ++  +   +YLL YVDDM
Sbjct: 889  VCLLKKSLYGLKQSPRQWNKRFSRFMIDQNFIRSEHDACVYVKQAGEQDHLYLLLYVDDM 948

Query: 1374 LIASRSKREIDLLQIQLSKEFEMKDLGQLRRYL 1472
            LIA +SK EI+ ++ QLS EFEMKD+G   R L
Sbjct: 949  LIAGKSKSEINKVE-QLSMEFEMKDMGPASRIL 980



 Score =  134 bits (336), Expect(2) = e-100
 Identities = 62/126 (49%), Positives = 85/126 (67%)
 Frame = +1

Query: 1   PQQNGVAERMNRTLLERAQCMRSNAGLSRYWWAEAVNTTCYLINRSPSTAIRFKTPMEVW 180
           PQQNGVA+RMNRT++E+ +CM + +GL   +WAEA  T  YLI+RSP++AI    P E+W
Sbjct: 505 PQQNGVADRMNRTIMEKVRCMLNESGLGEEFWAEAAATAAYLISRSPASAIDHNVPEELW 564

Query: 181 IGTPST*SHLRIFGCPAYFHVREDKITVRAKKAIFLGYLEGMKGYQLWCPEEKKIAVSRD 360
           +       HLR FG  AY H+ + K+  RA K IF+GY  G KGY++W  EE+K  +SR+
Sbjct: 565 LNKKPGYKHLRRFGSIAYVHIDQGKLKPRALKGIFIGYPSGTKGYKIWLLEEQKCVISRN 624

Query: 361 VTFDEK 378
           V F E+
Sbjct: 625 VLFHEE 630


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  315 bits (807), Expect(2) = 9e-84
 Identities = 162/274 (59%), Positives = 204/274 (74%), Gaps = 9/274 (3%)
 Frame = +3

Query: 678  ERHERRSMRPPTRYGYEE---HATCVFIAYDEDEPTSYRAAVSSSHSIEWKQAMGEEMQS 848
            +R  R  +RPPTRYG+E+   +A  V    D  EP++Y+ A+ SS S +W  AMG+EM+S
Sbjct: 757  DRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMES 816

Query: 849  LHKNDTWELVKVPKGKKATGCKWVFTVKDRISGSRGIVDSVWYKARLVAKGYAQKEGVEY 1028
            LHKN TW+LV  P G+K   CKWVF  K+ IS + G+     YKAR+VA+G+ Q+EGV+Y
Sbjct: 817  LHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVK----YKARVVARGFNQREGVDY 872

Query: 1029 NEFFSLVVKHTSIRTLLALVS*FDMELEQMDVKTAFLHGDLEENIYMSQPDGYVVVGKED 1208
            NE FS VV+HTSIR LLA+V+  ++ELEQ+DVKTAFLHG+LEE IYM+QPDG+ V GKE+
Sbjct: 873  NEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKEN 932

Query: 1209 YVCKLKKSLYGLKQSPR*WYLRFDK------FTRSDYDHCVYFRKLNDDSFIYLLPYVDD 1370
            +VCKLKKSLYGLKQSPR WY RFD       +TRS YD CVY+ +LNDDSFIYL+ YVDD
Sbjct: 933  HVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDD 992

Query: 1371 MLIASRSKREIDLLQIQLSKEFEMKDLGQLRRYL 1472
            MLIA++ K +I  L+  LS EFEMKDLG  R+ L
Sbjct: 993  MLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKIL 1026



 Score = 24.3 bits (51), Expect(2) = 9e-84
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 1451 GAAKKILDMVICRDRK 1498
            GAA+KIL M I RDR+
Sbjct: 1020 GAARKILGMEIIRDRE 1035



 Score =  173 bits (439), Expect = 2e-40
 Identities = 83/147 (56%), Positives = 107/147 (72%)
 Frame = +1

Query: 1   PQQNGVAERMNRTLLERAQCMRSNAGLSRYWWAEAVNTTCYLINRSPSTAIRFKTPMEVW 180
           PQQNGVAERMN+TLLERA+CM SNAGL R +WAEAV+T CYLINR P T I+ KTPME+W
Sbjct: 568 PQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMW 627

Query: 181 IGTPST*SHLRIFGCPAYFHVREDKITVRAKKAIFLGYLEGMKGYQLWCPEEKKIAVSRD 360
            G  +  S+L+ FGC AY+HV E K+  RAKK +F+GY +G+KG+++W P EK++ +SR+
Sbjct: 628 SGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRN 687

Query: 361 VTFDEKAMVGVHKFTGWETPTENSEPG 441
           V FDE  ++          PT  SE G
Sbjct: 688 VVFDESPLLRT-----IVKPTTTSETG 709


>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 983

 Score =  293 bits (749), Expect(2) = 7e-77
 Identities = 162/335 (48%), Positives = 218/335 (65%), Gaps = 13/335 (3%)
 Frame = +3

Query: 507  SSNIRAESSLQDKTVIEIHDDVEAEF--ETDGIKFKVETPIXXXXXXXXXXXXXXPSLAE 680
            S+N+  ES  Q+KT +++   + +    E + +    + P+               S+A+
Sbjct: 465  STNVPVES--QEKTSVQVEHLISSGHAPEKEDVAINQDAPVIQDSDSSIVHQSPKRSIAK 522

Query: 681  RHERRSMRPPTRYGYEEHATCVFIAYDED-----EPTSYRAAVSSSHSIEWKQAMGEEMQ 845
               +R+++PP RY  E +     ++  E+     EP+ Y  A+ S     W   M +EM+
Sbjct: 523  DKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSIYSEAIVSDDCNRWITTMHDEME 582

Query: 846  SLHKNDTWELVKVPKGKKATGCKWVFTVKDRISGSRGIVDSVWYKARLVAKGYAQKEGVE 1025
            SL KN TWELVK+PK KK+  CKW+F  K+ +S S    D   YKARLVAKGY+Q   ++
Sbjct: 583  SLEKNHTWELVKLPKEKKSIRCKWIFKRKEGMSPS----DEARYKARLVAKGYSQIPSID 638

Query: 1026 YNEFFSLVVKHTSIRTLLALVS*FDMELEQMDVKTAFLHGDLEENIYMSQPDGYVVVGKE 1205
            +N+ FS +VKH+SIRTLL++V+  D ELEQMDVKTAFLHG+LEE+IYM QP+G+VV GKE
Sbjct: 639  FNDVFSPIVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKE 698

Query: 1206 DYVCKLKKSLYGLKQSPR*WYLRFD------KFTRSDYDHCVYFRKLNDDSFIYLLPYVD 1367
            + VC+LKKSLYGLKQSPR WY RFD      KF RS+YD+CVY  K+ D S IYLL YVD
Sbjct: 699  NLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDNCVYL-KVVDGSAIYLLLYVD 757

Query: 1368 DMLIASRSKREIDLLQIQLSKEFEMKDLGQLRRYL 1472
            DMLIA++ K EI+ L+ QLS EFEMKDLG  ++ L
Sbjct: 758  DMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKIL 792



 Score = 23.5 bits (49), Expect(2) = 7e-77
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 1451 GAAKKILDMVICRDR 1495
            GAAKKIL M I R+R
Sbjct: 786  GAAKKILGMEITRER 800



 Score = 90.1 bits (222), Expect = 2e-15
 Identities = 52/129 (40%), Positives = 68/129 (52%)
 Frame = +1

Query: 91  WWAEAVNTTCYLINRSPSTAIRFKTPMEVWIGTPST*SHLRIFGCPAYFHVREDKITVRA 270
           +WAEAV+T CYL+NRSPS AI  KTP+E                              RA
Sbjct: 391 FWAEAVSTACYLVNRSPSYAIDKKTPIEP-----------------------------RA 421

Query: 271 KKAIFLGYLEGMKGYQLWCPEEKKIAVSRDVTFDEKAMVGVHKFTGWETPTENSEPGKDV 450
            K IFLGY  G+KGY+LWCPE KK+ +SR+V F E  +  +H       P E+ E     
Sbjct: 422 IKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVI--LHDKPSTNVPVESQEK---- 475

Query: 451 DNLQVEHIV 477
            ++QVEH++
Sbjct: 476 TSVQVEHLI 484


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  293 bits (751), Expect(2) = 9e-77
 Identities = 164/335 (48%), Positives = 216/335 (64%), Gaps = 13/335 (3%)
 Frame = +3

Query: 507  SSNIRAESSLQDKTVIEIHDDVEAEF--ETDGIKFKVETPIXXXXXXXXXXXXXXPSLAE 680
            S+N+  ES  Q+K  +++   + +    E + +    + P+               S+A+
Sbjct: 930  STNVPVES--QEKASVQVEHLISSGHAPEKEDVAINQDEPVIEDSNSSIVQQSPKRSIAK 987

Query: 681  RHERRSMRPPTRYGYEEHATCVFIAYDED-----EPTSYRAAVSSSHSIEWKQAMGEEMQ 845
               +R+++PP RY  E +     ++  E+     EP++Y  A+ S     W  AM +EM+
Sbjct: 988  DRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEME 1047

Query: 846  SLHKNDTWELVKVPKGKKATGCKWVFTVKDRISGSRGIVDSVWYKARLVAKGYAQKEGVE 1025
            SL KN TWELVK+PK KK   CKW+F  K+ IS S    D   YKARL+AKGY+Q  G++
Sbjct: 1048 SLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSS----DEARYKARLIAKGYSQIPGID 1103

Query: 1026 YNEFFSLVVKHTSIRTLLALVS*FDMELEQMDVKTAFLHGDLEENIYMSQPDGYVVVGKE 1205
            +N+ FS VVKH+SIRTLL++V+  D ELEQMDVKTAFLHG+LEE+IYM QP G+VV GKE
Sbjct: 1104 FNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKE 1163

Query: 1206 DYVCKLKKSLYGLKQSPR*WYLRFD------KFTRSDYDHCVYFRKLNDDSFIYLLPYVD 1367
            + VC+LKKSLYGLKQSPR WY RFD      KF RS+YD CVY  K+ D S IYLL YVD
Sbjct: 1164 NLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL-KVVDGSAIYLLLYVD 1222

Query: 1368 DMLIASRSKREIDLLQIQLSKEFEMKDLGQLRRYL 1472
            DMLIA++ K EI  L+ QLS EFEMKDLG  ++ L
Sbjct: 1223 DMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKIL 1257



 Score = 22.3 bits (46), Expect(2) = 9e-77
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 1451 GAAKKILDMVICRDR 1495
            GAAKKIL M I R R
Sbjct: 1251 GAAKKILGMEITRKR 1265



 Score =  182 bits (463), Expect = 2e-43
 Identities = 89/159 (55%), Positives = 113/159 (71%)
 Frame = +1

Query: 1    PQQNGVAERMNRTLLERAQCMRSNAGLSRYWWAEAVNTTCYLINRSPSTAIRFKTPMEVW 180
            PQQNGVAERMNRT++ +A+C+ SNAGL + +WAEAV+T CYLINRSPS AI  KTP+EVW
Sbjct: 797  PQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVW 856

Query: 181  IGTPST*SHLRIFGCPAYFHVREDKITVRAKKAIFLGYLEGMKGYQLWCPEEKKIAVSRD 360
             G+P+  S LR+FGC AY HV   K+  RA K IFLGY  G+KGY+LWCPE KK+ +SR+
Sbjct: 857  SGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRN 916

Query: 361  VTFDEKAMVGVHKFTGWETPTENSEPGKDVDNLQVEHIV 477
            V F E  M  +H       P E+ E      ++QVEH++
Sbjct: 917  VVFHESVM--LHDKPSTNVPVESQEKA----SVQVEHLI 949


>emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]
          Length = 621

 Score =  293 bits (749), Expect = 2e-76
 Identities = 158/279 (56%), Positives = 197/279 (70%), Gaps = 11/279 (3%)
 Frame = +3

Query: 669  SLAERHERRSMRPPTRYGYEEHATCVFIAYDED-----EPTSYRAAVSSSHSIEWKQAMG 833
            S+A+   +RS +PP RY  E +     ++  E+     EP++Y  A+ S     W  AM 
Sbjct: 163  SIAKEKPKRSTKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMH 222

Query: 834  EEMQSLHKNDTWELVKVPKGKKATGCKWVFTVKDRISGSRGIVDSVWYKARLVAKGYAQK 1013
            +EM+SL KN TWELVK+PK KK   CKW+F  K+ IS S    D   YKARLVAKGY+Q 
Sbjct: 223  DEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKECISPS----DEAMYKARLVAKGYSQI 278

Query: 1014 EGVEYNEFFSLVVKHTSIRTLLALVS*FDMELEQMDVKTAFLHGDLEENIYMSQPDGYVV 1193
             G+++N+ FS VVKH+SIRTLL++V+  D ELEQMDVKTAFLHG+LEE+IYM QP+G+VV
Sbjct: 279  PGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVV 338

Query: 1194 VGKEDYVCKLKKSLYGLKQSPR*WYLRFD------KFTRSDYDHCVYFRKLNDDSFIYLL 1355
             GKE+ VC+LKKSLYGLKQSPR WY RFD      KF RS+YD CVY  K+ D S IYLL
Sbjct: 339  PGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYV-KVADGSAIYLL 397

Query: 1356 PYVDDMLIASRSKREIDLLQIQLSKEFEMKDLGQLRRYL 1472
             YVDDMLIA++ K EI  L+ QLS EFEMKDLG +++ L
Sbjct: 398  LYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAVKKIL 436


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  288 bits (738), Expect(2) = 1e-75
 Identities = 162/335 (48%), Positives = 215/335 (64%), Gaps = 13/335 (3%)
 Frame = +3

Query: 507  SSNIRAESSLQDKTVIEIHDDVEAEF--ETDGIKFKVETPIXXXXXXXXXXXXXXPSLAE 680
            S+N+  ES  Q+K  +++   + +    E + +    + P+               S+A+
Sbjct: 632  STNVPVES--QEKVSVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVQQSPKRSIAK 689

Query: 681  RHERRSMRPPTRYGYEEHATCVFIAYDED-----EPTSYRAAVSSSHSIEWKQAMGEEMQ 845
               +R+ +PP RY  E +     ++  E+     EP++Y  A+ S     W  AM +EM+
Sbjct: 690  DRPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEME 749

Query: 846  SLHKNDTWELVKVPKGKKATGCKWVFTVKDRISGSRGIVDSVWYKARLVAKGYAQKEGVE 1025
            SL KN +WEL K+PK KK   CKW+F  K+ +S S    D   YKARLVAKGY+Q  G++
Sbjct: 750  SLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPS----DEARYKARLVAKGYSQIPGID 805

Query: 1026 YNEFFSLVVKHTSIRTLLALVS*FDMELEQMDVKTAFLHGDLEENIYMSQPDGYVVVGKE 1205
            +N+ FS VVKH+SIRTLL++V+  D ELEQMDVKTAFLHG+LEE+IYM QP+G+VV GKE
Sbjct: 806  FNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKE 865

Query: 1206 DYVCKLKKSLYGLKQSPR*WYLRFD------KFTRSDYDHCVYFRKLNDDSFIYLLPYVD 1367
            + VC+LKKSLYGLKQSPR WY RFD      KF RS+YD CVY  K+ D S IYLL YVD
Sbjct: 866  NLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL-KVVDGSAIYLLLYVD 924

Query: 1368 DMLIASRSKREIDLLQIQLSKEFEMKDLGQLRRYL 1472
            DMLIA++ K EI  L+ QLS EFEMKDLG  ++ L
Sbjct: 925  DMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKIL 959



 Score = 23.5 bits (49), Expect(2) = 1e-75
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 1451 GAAKKILDMVICRDR 1495
            GAAKKIL M I R+R
Sbjct: 953  GAAKKILGMEITRER 967



 Score =  181 bits (459), Expect = 7e-43
 Identities = 89/159 (55%), Positives = 112/159 (70%)
 Frame = +1

Query: 1   PQQNGVAERMNRTLLERAQCMRSNAGLSRYWWAEAVNTTCYLINRSPSTAIRFKTPMEVW 180
           PQQNGVAERMNRT++ +A+CM SNA L + +WAEAV+T CYLINRSPS AI  KTP+EVW
Sbjct: 499 PQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVW 558

Query: 181 IGTPST*SHLRIFGCPAYFHVREDKITVRAKKAIFLGYLEGMKGYQLWCPEEKKIAVSRD 360
            G+P+  S LR+FGC AY HV   K+  R  K IFLGYL G+KGY+LWCPE KK+ +SR+
Sbjct: 559 SGSPANYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETKKVVISRN 618

Query: 361 VTFDEKAMVGVHKFTGWETPTENSEPGKDVDNLQVEHIV 477
           V F E  M  +H       P E+ E      ++QVEH++
Sbjct: 619 VVFHESIM--LHDKPSTNVPVESQEK----VSVQVEHLI 651


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  288 bits (737), Expect(2) = 2e-75
 Identities = 160/335 (47%), Positives = 215/335 (64%), Gaps = 13/335 (3%)
 Frame = +3

Query: 507  SSNIRAESSLQDKTVIEIHDDVEAEF--ETDGIKFKVETPIXXXXXXXXXXXXXXPSLAE 680
            S+N+  ES  Q+K  +++   + +    E + +    + P+               S+A+
Sbjct: 758  STNVPVES--QEKASVQVEHLISSGHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSIAK 815

Query: 681  RHERRSMRPPTRYGYEEHATCVFIAYDED-----EPTSYRAAVSSSHSIEWKQAMGEEMQ 845
               +R+++PP RY  E +     ++  E+     EP++Y  A+ S     W  AM +EM+
Sbjct: 816  DKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEME 875

Query: 846  SLHKNDTWELVKVPKGKKATGCKWVFTVKDRISGSRGIVDSVWYKARLVAKGYAQKEGVE 1025
            SL KN TWE VK+PK KK   CKW+F  K+ +S S    D   YKARLVAKGY+Q  G++
Sbjct: 876  SLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPS----DEARYKARLVAKGYSQIPGID 931

Query: 1026 YNEFFSLVVKHTSIRTLLALVS*FDMELEQMDVKTAFLHGDLEENIYMSQPDGYVVVGKE 1205
            +N+ FS ++KH+SIRTLL +V+  D ELEQMDVKTAFLHG+LEE+IYM QP+G+VV+GKE
Sbjct: 932  FNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKE 991

Query: 1206 DYVCKLKKSLYGLKQSPR*WYLRFD------KFTRSDYDHCVYFRKLNDDSFIYLLPYVD 1367
            + VC+LKKSLYGLKQSPR WY RFD      KF RS+YD CVY  K+ D S IYLL YVD
Sbjct: 992  NLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL-KVVDGSAIYLLLYVD 1050

Query: 1368 DMLIASRSKREIDLLQIQLSKEFEMKDLGQLRRYL 1472
            DMLIA++ K EI  L+ QLS EF MKDLG  ++ L
Sbjct: 1051 DMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKIL 1085



 Score = 23.5 bits (49), Expect(2) = 2e-75
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 1451 GAAKKILDMVICRDR 1495
            GAAKKIL M I R+R
Sbjct: 1079 GAAKKILGMEITRER 1093



 Score =  175 bits (444), Expect = 4e-41
 Identities = 86/159 (54%), Positives = 110/159 (69%)
 Frame = +1

Query: 1    PQQNGVAERMNRTLLERAQCMRSNAGLSRYWWAEAVNTTCYLINRSPSTAIRFKTPMEVW 180
            PQQNGVAERMN  ++ +A+CM SNA L + +WAEAV+TTCYLINRSPS A   KTP+EVW
Sbjct: 625  PQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPIEVW 684

Query: 181  IGTPST*SHLRIFGCPAYFHVREDKITVRAKKAIFLGYLEGMKGYQLWCPEEKKIAVSRD 360
             G+P+  S LR+FGC AY HV   K+  RA K IFLGY  G+KGY+LWCPE KK+ +SR+
Sbjct: 685  SGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRN 744

Query: 361  VTFDEKAMVGVHKFTGWETPTENSEPGKDVDNLQVEHIV 477
            V F E  +  +H       P E+ E      ++QVEH++
Sbjct: 745  VVFHESVI--LHDKPSTNVPVESQEKA----SVQVEHLI 777


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  288 bits (737), Expect(2) = 2e-75
 Identities = 160/335 (47%), Positives = 215/335 (64%), Gaps = 13/335 (3%)
 Frame = +3

Query: 507  SSNIRAESSLQDKTVIEIHDDVEAEF--ETDGIKFKVETPIXXXXXXXXXXXXXXPSLAE 680
            S+N+  ES  Q+K  +++   + +    E + +    + P+               S+A+
Sbjct: 758  STNVPVES--QEKASVQVEHLISSGHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSIAK 815

Query: 681  RHERRSMRPPTRYGYEEHATCVFIAYDED-----EPTSYRAAVSSSHSIEWKQAMGEEMQ 845
               +R+++PP RY  E +     ++  E+     EP++Y  A+ S     W  AM +EM+
Sbjct: 816  DKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEME 875

Query: 846  SLHKNDTWELVKVPKGKKATGCKWVFTVKDRISGSRGIVDSVWYKARLVAKGYAQKEGVE 1025
            SL KN TWE VK+PK KK   CKW+F  K+ +S S    D   YKARLVAKGY+Q  G++
Sbjct: 876  SLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPS----DEARYKARLVAKGYSQIPGID 931

Query: 1026 YNEFFSLVVKHTSIRTLLALVS*FDMELEQMDVKTAFLHGDLEENIYMSQPDGYVVVGKE 1205
            +N+ FS ++KH+SIRTLL +V+  D ELEQMDVKTAFLHG+LEE+IYM QP+G+VV+GKE
Sbjct: 932  FNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKE 991

Query: 1206 DYVCKLKKSLYGLKQSPR*WYLRFD------KFTRSDYDHCVYFRKLNDDSFIYLLPYVD 1367
            + VC+LKKSLYGLKQSPR WY RFD      KF RS+YD CVY  K+ D S IYLL YVD
Sbjct: 992  NLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL-KVVDGSAIYLLLYVD 1050

Query: 1368 DMLIASRSKREIDLLQIQLSKEFEMKDLGQLRRYL 1472
            DMLIA++ K EI  L+ QLS EF MKDLG  ++ L
Sbjct: 1051 DMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKIL 1085



 Score = 23.5 bits (49), Expect(2) = 2e-75
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 1451 GAAKKILDMVICRDR 1495
            GAAKKIL M I R+R
Sbjct: 1079 GAAKKILGMEITRER 1093



 Score =  175 bits (444), Expect = 4e-41
 Identities = 86/159 (54%), Positives = 110/159 (69%)
 Frame = +1

Query: 1    PQQNGVAERMNRTLLERAQCMRSNAGLSRYWWAEAVNTTCYLINRSPSTAIRFKTPMEVW 180
            PQQNGVAERMN  ++ +A+CM SNA L + +WAEAV+TTCYLINRSPS A   KTP+EVW
Sbjct: 625  PQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPIEVW 684

Query: 181  IGTPST*SHLRIFGCPAYFHVREDKITVRAKKAIFLGYLEGMKGYQLWCPEEKKIAVSRD 360
             G+P+  S LR+FGC AY HV   K+  RA K IFLGY  G+KGY+LWCPE KK+ +SR+
Sbjct: 685  SGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRN 744

Query: 361  VTFDEKAMVGVHKFTGWETPTENSEPGKDVDNLQVEHIV 477
            V F E  +  +H       P E+ E      ++QVEH++
Sbjct: 745  VVFHESVI--LHDKPSTNVPVESQEKA----SVQVEHLI 777


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  288 bits (736), Expect(2) = 2e-75
 Identities = 162/335 (48%), Positives = 214/335 (63%), Gaps = 13/335 (3%)
 Frame = +3

Query: 507  SSNIRAESSLQDKTVIEIHDDVEAEF--ETDGIKFKVETPIXXXXXXXXXXXXXXPSLAE 680
            S+N+  ES  Q+K  +++   + +    E + +    + P+               S+A+
Sbjct: 695  STNVPVES--QEKASVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVHQSPKRSIAK 752

Query: 681  RHERRSMRPPTRYGYEEHATCVFIAYDED-----EPTSYRAAVSSSHSIEWKQAMGEEMQ 845
               +R+++PP RY  E       ++  E      EP++Y  A+ S     W  AM +EM+
Sbjct: 753  DKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDEME 812

Query: 846  SLHKNDTWELVKVPKGKKATGCKWVFTVKDRISGSRGIVDSVWYKARLVAKGYAQKEGVE 1025
            SL KN TWELVK+PK KK   CKW+F  K+ +S S    D   YKARLVAKGY+Q  G++
Sbjct: 813  SLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPS----DEARYKARLVAKGYSQIPGID 868

Query: 1026 YNEFFSLVVKHTSIRTLLALVS*FDMELEQMDVKTAFLHGDLEENIYMSQPDGYVVVGKE 1205
            +N+ FS VVKH+SIRTLL +V+  D ELEQM+VKTAFLHG+LEE+IYM QP+G+VV GKE
Sbjct: 869  FNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYMEQPEGFVVPGKE 928

Query: 1206 DYVCKLKKSLYGLKQSPR*WYLRFD------KFTRSDYDHCVYFRKLNDDSFIYLLPYVD 1367
            + VC+LKKSLYGLKQSPR WY RFD      KF  S+YD CVY  K+ D S IYLL YVD
Sbjct: 929  NLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSCVYL-KVVDGSVIYLLLYVD 987

Query: 1368 DMLIASRSKREIDLLQIQLSKEFEMKDLGQLRRYL 1472
            DMLIA++ K EI+ L+ QLS EFEMKDLG  ++ L
Sbjct: 988  DMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKIL 1022



 Score = 23.5 bits (49), Expect(2) = 2e-75
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 1451 GAAKKILDMVICRDR 1495
            GAAKKIL M I R+R
Sbjct: 1016 GAAKKILGMEITRER 1030



 Score =  179 bits (453), Expect = 4e-42
 Identities = 87/159 (54%), Positives = 111/159 (69%)
 Frame = +1

Query: 1    PQQNGVAERMNRTLLERAQCMRSNAGLSRYWWAEAVNTTCYLINRSPSTAIRFKTPMEVW 180
            PQQN VAERMNRT++ +A+CM SNAGL + +WAEAV+T CYLINRSP  AI  KTP+EVW
Sbjct: 562  PQQNDVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIEVW 621

Query: 181  IGTPST*SHLRIFGCPAYFHVREDKITVRAKKAIFLGYLEGMKGYQLWCPEEKKIAVSRD 360
             G+P+  S LR+FGC AY HV   K+  RA K IFLGY  G+KGY+LWCPE KK+ +SR+
Sbjct: 622  SGSPTNYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYASGVKGYKLWCPETKKVVISRN 681

Query: 361  VTFDEKAMVGVHKFTGWETPTENSEPGKDVDNLQVEHIV 477
            V F E  +  +H       P E+ E      ++QVEH++
Sbjct: 682  VVFHESVI--LHDKPSTNVPVESQEKA----SVQVEHLI 714


>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]
          Length = 1007

 Score =  287 bits (735), Expect = 7e-75
 Identities = 163/335 (48%), Positives = 213/335 (63%), Gaps = 13/335 (3%)
 Frame = +3

Query: 507  SSNIRAESSLQDKTVIEIHDDVEAEF--ETDGIKFKVETPIXXXXXXXXXXXXXXPSLAE 680
            S+N+  ES  Q+K  +++   + +    E + +    + P+                +A+
Sbjct: 505  STNVPVES--QEKASVQVEHLISSGHAPEKENVAINQDVPVIEDSDSSTVQQSPKRFIAK 562

Query: 681  RHERRSMRPPTRYGYEEHATCVFIAYDED-----EPTSYRAAVSSSHSIEWKQAMGEEMQ 845
               +R+ +PP RY  E +     ++  ED     EP++Y  A+ S     W  AM +EM+
Sbjct: 563  DKPKRNTKPPQRYIEEANIVAYALSVAEDIEGNAEPSTYSEAIVSDDCNRWITAMHDEME 622

Query: 846  SLHKNDTWELVKVPKGKKATGCKWVFTVKDRISGSRGIVDSVWYKARLVAKGYAQKEGVE 1025
            SL KN TWELVK+PK KK   CKW+F  K  IS S    D   YKARLVAKGY+Q  G++
Sbjct: 623  SLEKNHTWELVKLPKEKKPIRCKWIFKRKKGISPS----DEAMYKARLVAKGYSQIPGID 678

Query: 1026 YNEFFSLVVKHTSIRTLLALVS*FDMELEQMDVKTAFLHGDLEENIYMSQPDGYVVVGKE 1205
            +N+ FS VVKH+SIRTLL++V+  D ELEQMDVKTAFLHG+LEE+IYM Q +G+VV GKE
Sbjct: 679  FNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQSEGFVVPGKE 738

Query: 1206 DYVCKLKKSLYGLKQSPR*WYLRFD------KFTRSDYDHCVYFRKLNDDSFIYLLPYVD 1367
            + VC+LKKSLYGLKQS R WY RFD      KF RS+YD CVY  K+ D S IYLL YVD
Sbjct: 739  NLVCRLKKSLYGLKQSSRQWYKRFDSFMLSQKFRRSNYDSCVYV-KVADGSAIYLLLYVD 797

Query: 1368 DMLIASRSKREIDLLQIQLSKEFEMKDLGQLRRYL 1472
            DMLIA++ K EI  L+ QLS EFEMKDLG +++ L
Sbjct: 798  DMLIAAKDKSEIAKLKAQLSSEFEMKDLGAVKKIL 832



 Score =  136 bits (343), Expect = 2e-29
 Identities = 68/134 (50%), Positives = 86/134 (64%)
 Frame = +1

Query: 76  GLSRYWWAEAVNTTCYLINRSPSTAIRFKTPMEVWIGTPST*SHLRIFGCPAYFHVREDK 255
           GL + +W E V+T CYLINRSPS AI  KTP+EVW  +P   S LR+FGC AY HV   K
Sbjct: 397 GLPKQFWVETVSTACYLINRSPSYAIDKKTPIEVWSDSPVNYSDLRVFGCTAYAHVDNGK 456

Query: 256 ITVRAKKAIFLGYLEGMKGYQLWCPEEKKIAVSRDVTFDEKAMVGVHKFTGWETPTENSE 435
           +  RA K IFLGY  GMKGY+LWCP+ KK+ +SR+V F E  M  +H       P E+ E
Sbjct: 457 LEPRAIKCIFLGYPSGMKGYKLWCPKTKKVVISRNVVFHESVM--LHDKPSTNVPVESQE 514

Query: 436 PGKDVDNLQVEHIV 477
                 ++QVEH++
Sbjct: 515 KA----SVQVEHLI 524


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  285 bits (728), Expect(2) = 2e-74
 Identities = 161/335 (48%), Positives = 215/335 (64%), Gaps = 13/335 (3%)
 Frame = +3

Query: 507  SSNIRAESSLQDKTVIEIHDDVEAEF--ETDGIKFKVETPIXXXXXXXXXXXXXXPSLAE 680
            S+N+  ES  Q+K  +++   + +    E + +    +  +               S+A+
Sbjct: 602  STNVPVES--QEKASVQVEHLISSGHAPEKEDVAINQDASVIEDSDSSAVQQSPKRSIAK 659

Query: 681  RHERRSMRPPTRYGYEEHATCVFIAYDED-----EPTSYRAAVSSSHSIEWKQAMGEEMQ 845
               +R+++PP RY  E +     ++  E+     EP++Y  A+ S     W  AM +EM+
Sbjct: 660  DKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDGCNRWITAMHDEME 719

Query: 846  SLHKNDTWELVKVPKGKKATGCKWVFTVKDRISGSRGIVDSVWYKARLVAKGYAQKEGVE 1025
            SL KN TWELVK+PK KK   CKW+F  K  +S S    D   YKARLVAKGY+Q  G++
Sbjct: 720  SLEKNHTWELVKLPKEKKPIRCKWIFKRKKGMSPS----DEARYKARLVAKGYSQIPGID 775

Query: 1026 YNEFFSLVVKHTSIRTLLALVS*FDMELEQMDVKTAFLHGDLEENIYMSQPDGYVVVGKE 1205
            +N+ FS V+KH+SIRTLL++V+  D ELEQMDVKTAFLHG+LEE+IYM QP+G+VV GKE
Sbjct: 776  FNDVFSPVLKHSSIRTLLSIVAVHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKE 835

Query: 1206 DYVCKLKKSLYGLKQSPR*WYLRFD------KFTRSDYDHCVYFRKLNDDSFIYLLPYVD 1367
            + V +LKKSLYGLKQSPR WY RFD      KF RS+YD CVY  K+ D S IYLL YVD
Sbjct: 836  NLVYRLKKSLYGLKQSPRQWYKRFDSFMFSQKFRRSNYDSCVYL-KVVDGSSIYLLLYVD 894

Query: 1368 DMLIASRSKREIDLLQIQLSKEFEMKDLGQLRRYL 1472
            DMLIA++ K EI+ L+ QLS EFEMKDLG  ++ L
Sbjct: 895  DMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKIL 929



 Score = 23.5 bits (49), Expect(2) = 2e-74
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 1451 GAAKKILDMVICRDR 1495
            GAAKKIL M I R+R
Sbjct: 923  GAAKKILGMEITRER 937



 Score =  102 bits (254), Expect = 4e-19
 Identities = 50/106 (47%), Positives = 67/106 (63%)
 Frame = +1

Query: 160 KTPMEVWIGTPST*SHLRIFGCPAYFHVREDKITVRAKKAIFLGYLEGMKGYQLWCPEEK 339
           KTP+EVW G+P+  S LR+FGC AY HV   K+  RA K IFLGY  G+K Y+LWCP+ K
Sbjct: 522 KTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKDYKLWCPKTK 581

Query: 340 KIAVSRDVTFDEKAMVGVHKFTGWETPTENSEPGKDVDNLQVEHIV 477
           K+ +SR+V F E  M  +H       P E+ E      ++QVEH++
Sbjct: 582 KVVISRNVVFHESVM--LHDKPSTNVPVESQEKA----SVQVEHLI 621


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  286 bits (731), Expect = 2e-74
 Identities = 155/288 (53%), Positives = 193/288 (67%), Gaps = 18/288 (6%)
 Frame = +3

Query: 669  SLAERHERRSMRPPTRY---------GYEEHATCVFIAYDEDEPTSYRAAVSSSHSIEWK 821
            S+A    RR +R P RY              A  V      +EP SY+ A+ S  S +W 
Sbjct: 871  SIAAHRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWL 930

Query: 822  QAMGEEMQSLHKNDTWELVKVPKGKKATGCKWVFTVKDRISGSRGIVDSVWYKARLVAKG 1001
             +M +EM SL KN TWELV +P+G K   CKW+F +KD IS      +   YK+RLVAKG
Sbjct: 931  SSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXD----EPPKYKSRLVAKG 986

Query: 1002 YAQKEGVEYNEFFSLVVKHTSIRTLLALVS*FDMELEQMDVKTAFLHGDLEENIYMSQPD 1181
            ++QKEG++YNE FS VVKH SIR LLA+VS F++EL+Q+DVKTAFLHG+LEE IYM QP+
Sbjct: 987  FSQKEGIDYNEVFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPE 1046

Query: 1182 GYVVVGKEDYVCKLKKSLYGLKQSPR*WYLRFD------KFTRSDYDHCVYFRKLNDDSF 1343
            G+V   K D+VC LKKSLYGLKQSPR WY RFD      +F R+ YD CVYF+ L D SF
Sbjct: 1047 GFVDSEKSDHVCFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDGSF 1106

Query: 1344 IYLLPYVDDMLIASRSKREIDLLQIQLSKEFEMKDLGQLRRYL---IW 1478
            IYLL YVDDMLIA++++ EI+ L+  LS EFEMKDLG  ++ L   IW
Sbjct: 1107 IYLLLYVDDMLIAAKNRAEINKLKQLLSSEFEMKDLGAAKKILGMEIW 1154



 Score =  188 bits (478), Expect = 5e-45
 Identities = 96/163 (58%), Positives = 117/163 (71%), Gaps = 2/163 (1%)
 Frame = +1

Query: 1    PQQNGVAERMNRTLLERAQCMRSNAGLSRYWWAEAVNTTCYLINRSPSTAIRFKTPMEVW 180
            PQQNGVAERMN+TL++RA+CMR +AGLS+ +WAEAVNT  YL+NRSPSTAI FKTP EVW
Sbjct: 689  PQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVW 748

Query: 181  IGTPST*SHLRIFGCPAYFHVREDKITVRAKKAIFLGYLEGMKGYQLWCPEEK--KIAVS 354
             G PS  S L+IFGCPAY HV + K+  RA K IFLGY  G+KGY+LWC E++  K  +S
Sbjct: 749  SGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIIS 808

Query: 355  RDVTFDEKAMVGVHKFTGWETPTENSEPGKDVDNLQVEHIVPM 483
            RDVTFDE AM G  K  G    T  ++ G +   ++ E   PM
Sbjct: 809  RDVTFDESAMFGQRKEFGDLAGTSKTDLGAN-QKVEFEVDAPM 850


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  285 bits (730), Expect = 3e-74
 Identities = 150/275 (54%), Positives = 188/275 (68%), Gaps = 7/275 (2%)
 Frame = +3

Query: 669  SLAERHERRSMRPPTRYGYE-EHATCVFIAYDEDEPTSYRAAVSSSHSIEWKQAMGEEMQ 845
            S+A    +R+ +P  R+G+E E      ++  + +PT+Y  A+ S  S  W  AM EEM+
Sbjct: 747  SIALDKPKRNRKPIQRFGFEPEEDVSRALSISQGDPTTYEDAIESVESAGWIGAMTEEME 806

Query: 846  SLHKNDTWELVKVPKGKKATGCKWVFTVKDRISGSRGIVDSVWYKARLVAKGYAQKEGVE 1025
            SLHKN  WELV  PK +K  GCKWVF  K+ I       D++ YKARLVAKGY+QKEGV+
Sbjct: 807  SLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHED----DAITYKARLVAKGYSQKEGVD 862

Query: 1026 YNEFFSLVVKHTSIRTLLALVS*FDMELEQMDVKTAFLHGDLEENIYMSQPDGYVVVGKE 1205
            Y+E FS VVKHTSIR LL++ + +DME+EQMDVKTAFLHGDLEE+IYMSQP+G+V  GKE
Sbjct: 863  YDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKE 922

Query: 1206 DYVCKLKKSLYGLKQSPR*WYLRFDK------FTRSDYDHCVYFRKLNDDSFIYLLPYVD 1367
            + VC+LKKSLYGLKQSPR WY  FD       +TR  YD CVY+    D   I LL YVD
Sbjct: 923  NLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYDCCVYYHVFEDGKVILLLLYVD 982

Query: 1368 DMLIASRSKREIDLLQIQLSKEFEMKDLGQLRRYL 1472
            DMLIA R   +I  L+ +L  EF+MKDLG  ++ L
Sbjct: 983  DMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQKIL 1017



 Score =  148 bits (373), Expect = 7e-33
 Identities = 75/156 (48%), Positives = 100/156 (64%), Gaps = 7/156 (4%)
 Frame = +1

Query: 1    PQQNGVAERMNRTLLERAQCMRSNAGLSRYWWAEAVNTTCYLINRSPSTAIRFKTPMEVW 180
            PQQNGVAERMNRTL+E+ + MR +AGL   +WAEA N  CYLINRSPS AI FK   EVW
Sbjct: 551  PQQNGVAERMNRTLMEKERSMRFHAGLPEEFWAEAANHACYLINRSPSRAINFKCAEEVW 610

Query: 181  IGTPST*SHLRIFGCPAYFHVRED---KITVRAKKAIFLGYLEGMKGYQLWCPEEKKIAV 351
             G P   S+LR+FGC AY H+ +D   K+  ++ + +F+G+ +G+KGY+LW    +K  +
Sbjct: 611  SGKPVDYSNLRVFGCSAYAHIPKDERTKLEPKSLECLFIGFEKGVKGYKLWDIVNEKKVI 670

Query: 352  SRDVTFDEKAMVGVH----KFTGWETPTENSEPGKD 447
            SRDV FDE+  + +          E   E +E G D
Sbjct: 671  SRDVVFDEREAISISLAKPSVADSEAQVEQNEQGND 706


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  276 bits (707), Expect(2) = 1e-72
 Identities = 151/279 (54%), Positives = 192/279 (68%), Gaps = 11/279 (3%)
 Frame = +3

Query: 669  SLAERHERRSMRPPTRYGYEEHATCVFIAYDED-----EPTSYRAAVSSSHSIEWKQAMG 833
            S+A+R  +R+ +PP R   E + +   ++  E      EP +Y+ AV    S  W  AM 
Sbjct: 780  SIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMH 839

Query: 834  EEMQSLHKNDTWELVKVPKGKKATGCKWVFTVKDRISGSRGIVDSVWYKARLVAKGYAQK 1013
            EEMQSL KN TWE+V +PK KK   CKW+F  K+ +S S    +   YKARLVA+GY+Q 
Sbjct: 840  EEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLS----EPPKYKARLVARGYSQI 895

Query: 1014 EGVEYNEFFSLVVKHTSIRTLLALVS*FDMELEQMDVKTAFLHGDLEENIYMSQPDGYVV 1193
             GV+YN+ FS VVKH+SIRT L++V+  D+ELEQ+DVKTAFLHG+LEE+IYM QP+G++V
Sbjct: 896  PGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIV 955

Query: 1194 VGKEDYVCKLKKSLYGLKQSPR*WYLRFD------KFTRSDYDHCVYFRKLNDDSFIYLL 1355
             GKE YVCKLK+SLYGLKQSPR W  RFD       F RS YD CVY + +N  S IYLL
Sbjct: 956  PGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-GSPIYLL 1014

Query: 1356 PYVDDMLIASRSKREIDLLQIQLSKEFEMKDLGQLRRYL 1472
             YVDDMLIA++SK EI  L+  LS EF+MKDLG  ++ L
Sbjct: 1015 LYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKIL 1053



 Score = 25.8 bits (55), Expect(2) = 1e-72
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 1451 GAAKKILDMVICRDRK 1498
            G+AKKIL M I RDRK
Sbjct: 1047 GSAKKILGMEISRDRK 1062



 Score =  162 bits (411), Expect = 3e-37
 Identities = 88/173 (50%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
 Frame = +1

Query: 1    PQQNGVAERMNRTLLERAQCMRSNAGLSRYWWAEAVNTTCYLINRSPSTAIRFKTPMEVW 180
            PQQNGVAERMNRT++ RA+CM S+A +++ +WAEA +T CYLINRSPS  +  KTP+EVW
Sbjct: 584  PQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVW 643

Query: 181  IGTPST*SHLRIFGCPAYFHVREDKITVRAKKAIFLGYLEGMKGYQLWCPEEKKIAVSRD 360
             GTP+  S L++FGC AY HV   K+  RA K +FLGY  G+KGY+LW PE  K  +SR 
Sbjct: 644  SGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRS 703

Query: 361  VTFDEKAMVGVHKFTGWETPTENSEPGKDVD--NLQVEHIVPMFLDH*GLQVQ 513
            V F+E  M     FT    P+E+  P K++   ++QVEH+     D  G+QV+
Sbjct: 704  VVFNESVM-----FTN-SLPSEH-VPEKELQRMHMQVEHVD----DDTGVQVE 745


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  277 bits (709), Expect(2) = 1e-72
 Identities = 150/279 (53%), Positives = 192/279 (68%), Gaps = 11/279 (3%)
 Frame = +3

Query: 672  LAERHERRSMRPPTRYGYEEHATCVFIAYDED-----EPTSYRAAVSSSHSIEWKQAMGE 836
            +A+R  +R+ +PP R   E + +   ++  E      EP +Y+ AV    S  W  AM E
Sbjct: 779  IAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHE 838

Query: 837  EMQSLHKNDTWELVKVPKGKKATGCKWVFTVKDRISGSRGIVDSVWYKARLVAKGYAQKE 1016
            EMQSL KN TWE+V +PK KK   CKW+F  K+ +S S    +   YKARLVA+GY+Q  
Sbjct: 839  EMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSS----EPPKYKARLVARGYSQIP 894

Query: 1017 GVEYNEFFSLVVKHTSIRTLLALVS*FDMELEQMDVKTAFLHGDLEENIYMSQPDGYVVV 1196
            GV+YN+ FS VVKH+SIRT L++V+  D+ELEQ+DVKTAFLHG+LEE+IYM QP+G++V 
Sbjct: 895  GVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVP 954

Query: 1197 GKEDYVCKLKKSLYGLKQSPR*WYLRFD------KFTRSDYDHCVYFRKLNDDSFIYLLP 1358
            GKE YVCKLK+SLYGLKQSPR W  RFD       F RS YD CVY + +N  S IYLL 
Sbjct: 955  GKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLL 1013

Query: 1359 YVDDMLIASRSKREIDLLQIQLSKEFEMKDLGQLRRYLI 1475
            YVDDMLIA++SK EI  L+  LS EF+MKDLG  ++ L+
Sbjct: 1014 YVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILV 1052



 Score = 25.0 bits (53), Expect(2) = 1e-72
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 1451 GAAKKILDMVICRDRK 1498
            G+AKKIL M I RDRK
Sbjct: 1045 GSAKKILVMEISRDRK 1060



 Score =  164 bits (414), Expect = 1e-37
 Identities = 88/173 (50%), Positives = 118/173 (68%), Gaps = 2/173 (1%)
 Frame = +1

Query: 1    PQQNGVAERMNRTLLERAQCMRSNAGLSRYWWAEAVNTTCYLINRSPSTAIRFKTPMEVW 180
            PQQNGVAERMNRT++ RA+CM S+A +++ +WAEA +T CYLINRSPS  +  KTP+EVW
Sbjct: 582  PQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVW 641

Query: 181  IGTPST*SHLRIFGCPAYFHVREDKITVRAKKAIFLGYLEGMKGYQLWCPEEKKIAVSRD 360
             GTP+  S L++FGC AY HV   K+  RA K +FLGY  G+KGY+LW PE  K  +SR 
Sbjct: 642  SGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRS 701

Query: 361  VTFDEKAMVGVHKFTGWETPTENSEPGKDVD--NLQVEHIVPMFLDH*GLQVQ 513
            V F+E  M     FT    P+E+  P K++   ++QVEH+     D+ G+QV+
Sbjct: 702  VVFNESVM-----FTN-SLPSEH-VPEKELQRMHMQVEHVD----DYTGVQVE 743


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  276 bits (706), Expect(2) = 1e-72
 Identities = 150/278 (53%), Positives = 191/278 (68%), Gaps = 11/278 (3%)
 Frame = +3

Query: 672  LAERHERRSMRPPTRYGYEEHATCVFIAYDED-----EPTSYRAAVSSSHSIEWKQAMGE 836
            +A+R  +R+ +PP R   E + +   ++  E      EP +Y+ AV    S  W  AM E
Sbjct: 779  IAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHE 838

Query: 837  EMQSLHKNDTWELVKVPKGKKATGCKWVFTVKDRISGSRGIVDSVWYKARLVAKGYAQKE 1016
            EMQSL KN TWE+V +PK KK   CKW+F  K+ +S S    +   YKARLVA+GY+Q  
Sbjct: 839  EMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSS----EPPKYKARLVARGYSQIP 894

Query: 1017 GVEYNEFFSLVVKHTSIRTLLALVS*FDMELEQMDVKTAFLHGDLEENIYMSQPDGYVVV 1196
            GV+YN+ FS VVKH+SIRT L++V+  D+ELEQ+DVKTAFLHG+LEE+IYM QP+G++V 
Sbjct: 895  GVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVP 954

Query: 1197 GKEDYVCKLKKSLYGLKQSPR*WYLRFD------KFTRSDYDHCVYFRKLNDDSFIYLLP 1358
            GKE YVCKLK+SLYGLKQSPR W  RFD       F RS YD CVY + +N  S IYLL 
Sbjct: 955  GKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLL 1013

Query: 1359 YVDDMLIASRSKREIDLLQIQLSKEFEMKDLGQLRRYL 1472
            YVDDMLIA++SK EI  L+  LS EF+MKDLG  ++ L
Sbjct: 1014 YVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKIL 1051



 Score = 25.8 bits (55), Expect(2) = 1e-72
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 1451 GAAKKILDMVICRDRK 1498
            G+AKKIL M I RDRK
Sbjct: 1045 GSAKKILGMEISRDRK 1060



 Score =  162 bits (411), Expect = 3e-37
 Identities = 88/173 (50%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
 Frame = +1

Query: 1    PQQNGVAERMNRTLLERAQCMRSNAGLSRYWWAEAVNTTCYLINRSPSTAIRFKTPMEVW 180
            PQQNGVAERMNRT++ RA+CM S+A +++ +WAEA +T CYLINRSPS  +  KTP+EVW
Sbjct: 582  PQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVW 641

Query: 181  IGTPST*SHLRIFGCPAYFHVREDKITVRAKKAIFLGYLEGMKGYQLWCPEEKKIAVSRD 360
             GTP+  S L++FGC AY HV   K+  RA K +FLGY  G+KGY+LW PE  K  +SR 
Sbjct: 642  SGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRS 701

Query: 361  VTFDEKAMVGVHKFTGWETPTENSEPGKDVD--NLQVEHIVPMFLDH*GLQVQ 513
            V F+E  M     FT    P+E+  P K++   ++QVEH+     D  G+QV+
Sbjct: 702  VVFNESVM-----FTN-SLPSEH-VPEKELQRMHMQVEHVD----DDTGVQVE 743


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  276 bits (706), Expect(2) = 1e-72
 Identities = 150/278 (53%), Positives = 191/278 (68%), Gaps = 11/278 (3%)
 Frame = +3

Query: 672  LAERHERRSMRPPTRYGYEEHATCVFIAYDED-----EPTSYRAAVSSSHSIEWKQAMGE 836
            +A+R  +R+ +PP R   E + +   ++  E      EP +Y+ AV    S  W  AM E
Sbjct: 779  IAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHE 838

Query: 837  EMQSLHKNDTWELVKVPKGKKATGCKWVFTVKDRISGSRGIVDSVWYKARLVAKGYAQKE 1016
            EMQSL KN TWE+V +PK KK   CKW+F  K+ +S S    +   YKARLVA+GY+Q  
Sbjct: 839  EMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSS----EPPKYKARLVARGYSQIP 894

Query: 1017 GVEYNEFFSLVVKHTSIRTLLALVS*FDMELEQMDVKTAFLHGDLEENIYMSQPDGYVVV 1196
            GV+YN+ FS VVKH+SIRT L++V+  D+ELEQ+DVKTAFLHG+LEE+IYM QP+G++V 
Sbjct: 895  GVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVP 954

Query: 1197 GKEDYVCKLKKSLYGLKQSPR*WYLRFD------KFTRSDYDHCVYFRKLNDDSFIYLLP 1358
            GKE YVCKLK+SLYGLKQSPR W  RFD       F RS YD CVY + +N  S IYLL 
Sbjct: 955  GKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLL 1013

Query: 1359 YVDDMLIASRSKREIDLLQIQLSKEFEMKDLGQLRRYL 1472
            YVDDMLIA++SK EI  L+  LS EF+MKDLG  ++ L
Sbjct: 1014 YVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKIL 1051



 Score = 25.8 bits (55), Expect(2) = 1e-72
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 1451 GAAKKILDMVICRDRK 1498
            G+AKKIL M I RDRK
Sbjct: 1045 GSAKKILGMEISRDRK 1060



 Score =  160 bits (405), Expect = 1e-36
 Identities = 87/173 (50%), Positives = 116/173 (67%), Gaps = 2/173 (1%)
 Frame = +1

Query: 1    PQQNGVAERMNRTLLERAQCMRSNAGLSRYWWAEAVNTTCYLINRSPSTAIRFKTPMEVW 180
            PQQNGVAERMNRT++ RA+CM S+A +++ +WAEA +T CYLINRSPS  +  KTP+EVW
Sbjct: 582  PQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVW 641

Query: 181  IGTPST*SHLRIFGCPAYFHVREDKITVRAKKAIFLGYLEGMKGYQLWCPEEKKIAVSRD 360
             G P+  S L++FGC AY HV   K+  RA K +FLGY  G+KGY+LW PE  K  +SR 
Sbjct: 642  SGMPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRS 701

Query: 361  VTFDEKAMVGVHKFTGWETPTENSEPGKDVD--NLQVEHIVPMFLDH*GLQVQ 513
            V F+E  M     FT    P+E+  P K++   ++QVEH+     D  G+QV+
Sbjct: 702  VVFNESVM-----FTN-SLPSEH-VPEKELQRMHMQVEHVD----DDTGVQVE 743


>emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]
          Length = 595

 Score =  280 bits (715), Expect = 1e-72
 Identities = 144/275 (52%), Positives = 197/275 (71%), Gaps = 7/275 (2%)
 Frame = +3

Query: 669  SLAERHERRSMRPPTRYGYEEHATCVFIAYDEDEPTSYRAAVSSSHSIEWKQAMGEEMQS 848
            S+A    RR+++PPTRYG+E+  +   I   +D P +++ A+ +     W  AM EE+Q 
Sbjct: 128  SIAIDKPRRTIKPPTRYGFEDLVSYALITSSKD-PITFQEAIHNQEKSRWMGAMVEEIQF 186

Query: 849  LHKNDTWELVKVPKGKKATGCKWVFTVKDRISGSRGIVDSVWYKARLVAKGYAQKEGVEY 1028
            LHKN TW+LV+ P+GK+A GCKWV+  K+ IS   G      +KARLVAKGY+Q++GV+Y
Sbjct: 187  LHKNQTWDLVEPPEGKRAIGCKWVYKKKEAISKKEGEK----FKARLVAKGYSQRKGVDY 242

Query: 1029 NEFFSLVVKHTSIRTLLALVS*FDMELEQMDVKTAFLHGDLEENIYMSQPDGYVVVGKED 1208
            +E FS +V+HTSIRT+L LV+ FDM+LEQMDV+T FLHGDLEE +YM QP+G++  G+E 
Sbjct: 243  DEIFSPMVRHTSIRTVLGLVAHFDMQLEQMDVETTFLHGDLEELVYMVQPEGFIQPGQEH 302

Query: 1209 YVCKLKKSLYGLKQSPR*WYLRFDK------FTRSDYDHCVYFRKLNDD-SFIYLLPYVD 1367
             VCKL+KSLYGLKQSPR WY  FD       + R +YD  VY + L+DD SFI+LL YVD
Sbjct: 303  LVCKLRKSLYGLKQSPRQWYKCFDSYIIRIGYKRCEYDCFVYVKSLDDDSSFIFLLLYVD 362

Query: 1368 DMLIASRSKREIDLLQIQLSKEFEMKDLGQLRRYL 1472
            DMLIA++S  E++ L+  LSKEF+MK+L   ++ +
Sbjct: 363  DMLIAAKSMVEVNKLKSLLSKEFDMKELDAAKKII 397


>ref|XP_005717320.1| Retrovirus-related Gag-Pol polyprotein [Chondrus crispus]
            gi|515797406|emb|CDF77536.1| Retrovirus-related Gag-Pol
            polyprotein [Chondrus crispus]
          Length = 1365

 Score =  192 bits (487), Expect(2) = 5e-72
 Identities = 118/330 (35%), Positives = 178/330 (53%), Gaps = 10/330 (3%)
 Frame = +3

Query: 504  SSSNIRAESSLQDKTVIEIHDDVEA-EFETDGIKFKVETPIXXXXXXXXXXXXXXPSLAE 680
            +++ + +E       VIE  D     E + D +   VETP               P+ A 
Sbjct: 760  NANEVGSEEDEISGEVIENEDTHSVGENDEDDVSPPVETP---------NVTPPTPTPAV 810

Query: 681  RHERRSMRPPTRYGYEEHATCVFIAYDE--DEPTSYRAAVSSSHSIEWKQAMGEEMQSLH 854
            R   R  RPP  +     A  +        + P +++ A     +  W+  + +E+ S  
Sbjct: 811  RRSSRISRPPGSWWRSNFAAALLSHAHVAIEGPKTFKQATHGPRAAFWQTGIDKELASQT 870

Query: 855  KNDTWELVKVPKGKKATGCKWVFTVKDRISGSRGIVDSVWYKARLVAKGYAQKEGVEYNE 1034
            KN TW+LV   +       +WVF VK     +  IV+S   KARLVA+G+ Q +G++Y E
Sbjct: 871  KNQTWKLVPRSEASNILTSRWVFNVKQLPDANGNIVESA--KARLVARGFQQVQGLDYTE 928

Query: 1035 FFSLVVKHTSIRTLLALVS*FDMELEQMDVKTAFLHGDLEENIYMSQPDGYVVVGKEDYV 1214
             ++ V+K T+IR LLALV+ +D+EL QMDV TAFL+GDL+E+IYM QP+G V   K D+V
Sbjct: 929  TYAPVIKFTTIRLLLALVAHYDLELHQMDVVTAFLNGDLDEDIYMEQPEGCVDKSKSDHV 988

Query: 1215 CKLKKSLYGLKQSPR*WYLRFDKFTRSDY-------DHCVYFRKLNDDSFIYLLPYVDDM 1373
            CKL K+LYGLKQ+PR W+ + D F   +        D C+Y +++ +   +  L YVDD+
Sbjct: 989  CKLLKALYGLKQAPRQWHTKVDDFLLGELGFEISRSDPCLYIKRIGNTIMLIAL-YVDDL 1047

Query: 1374 LIASRSKREIDLLQIQLSKEFEMKDLGQLR 1463
            L+A      I  ++ +L+K FEMKDL + +
Sbjct: 1048 LLAGSDIHAIKWMKGELNKRFEMKDLSEAK 1077



 Score =  108 bits (269), Expect(2) = 5e-72
 Identities = 59/151 (39%), Positives = 92/151 (60%), Gaps = 4/151 (2%)
 Frame = +1

Query: 1    PQQNGVAERMNRTLLERAQCMRSNAGLSRYWWAEAVNTTCYLINRSPSTAIRFK-TPMEV 177
            P+QNGVAER+NRTL++  + M S+  +S+ +WAEA+ T  Y+ NR  S A+    TP  +
Sbjct: 595  PEQNGVAERLNRTLIDLVRSMLSHKQVSKRFWAEALATAVYVRNRVTSRALPVNTTPHHI 654

Query: 178  WIGTPST*SHLRIFGCPAYFHVRE---DKITVRAKKAIFLGYLEGMKGYQLWCPEEKKIA 348
            W+ +     HLR+FG   ++ + +    K+ +RA++A+FLGY +  K Y+LW  E  K+ 
Sbjct: 655  WMKSTPNVGHLRVFGSKCWYTLPKLELRKLDLRAREAMFLGYSQCSKAYKLWDGELSKVV 714

Query: 349  VSRDVTFDEKAMVGVHKFTGWETPTENSEPG 441
            VSRD  FDE +  G+H     E  + +S+ G
Sbjct: 715  VSRDAKFDE-STCGMHDIPAHEKDSISSDVG 744