BLASTX nr result
ID: Ephedra25_contig00024148
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00024148
(600 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera] 61 2e-07
emb|CAN76439.1| hypothetical protein VITISV_001759 [Vitis vinifera] 50 2e-07
emb|CAN76821.1| hypothetical protein VITISV_017285 [Vitis vinifera] 52 9e-07
emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera] 49 1e-06
ref|XP_006590177.1| PREDICTED: uncharacterized protein LOC102669... 46 1e-06
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 42 2e-06
gb|EFA07743.1| hypothetical protein TcasGA2_TC002223 [Tribolium ... 50 2e-06
ref|XP_969432.2| PREDICTED: similar to Copia protein (Gag-int-po... 50 2e-06
gb|EFA05312.1| hypothetical protein TcasGA2_TC015470 [Tribolium ... 58 2e-06
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 42 2e-06
emb|CAN71445.1| hypothetical protein VITISV_042489 [Vitis vinifera] 48 3e-06
ref|XP_003240529.1| PREDICTED: copia protein-like [Acyrthosiphon... 44 4e-06
ref|XP_004237308.1| PREDICTED: uncharacterized protein LOC101266... 42 5e-06
ref|XP_004248624.1| PREDICTED: uncharacterized protein LOC101255... 42 5e-06
>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
Length = 1544
Score = 61.2 bits (147), Expect = 2e-07
Identities = 66/223 (29%), Positives = 98/223 (43%), Gaps = 24/223 (10%)
Frame = +2
Query: 2 SIVGIGDIQLNF-GETTI*LKNTYLVKGLGRSLIYLY*LIHNNY--------------KF 136
+++ +G+I LNF T+ LKN V + R+LI + L N Y KF
Sbjct: 652 AVLAVGNIALNFKNNRTLFLKNVLYVPSIRRNLIPISSLSKNGYSVCFNEFYDDSVVIKF 711
Query: 137 LAYQK*GGGIC---YRISRNNKIIA*GIEINGLLVMKPMKIKAFFTEKENTNLWHRRLGH 307
G + Y + ++ E+N ++ P+K K E T LWH RLGH
Sbjct: 712 REQMICSGSLIDSLYILKVTPELQLTNSEVNNFDIVAPLKRKRPI-ELSYTYLWHLRLGH 770
Query: 308 INNT*VSKINDAIIDGPKKSTTLKTVKLAFWQKCRGYLLTKRTE--KPQRS*N*YTL--- 472
IN + +I+ + DGP S LK L + C +TKR K R+ + L
Sbjct: 771 IN---LDRISLLVKDGPLSS--LKVEALPTCESCLEGKMTKRPFPLKGNRANDVLELIHS 825
Query: 473 -MCVNQLHQHHLVVKNT*TFTDNFSKMSWCYTLTRKSEVFQHF 598
+C Q + TFTD++S+ + Y L RKSE F+ F
Sbjct: 826 DLCGPMSVQARGGFEYFVTFTDDYSRYGYIYLLCRKSECFEKF 868
>emb|CAN76439.1| hypothetical protein VITISV_001759 [Vitis vinifera]
Length = 808
Score = 50.1 bits (118), Expect(2) = 2e-07
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +1
Query: 373 TQNCEACILAKM*RLPFNQ-KNRKTTKILELIHSNVCESITPASFGGKKY 519
+Q CE C++ K R F + K+ K K+LEL+HS++C I P S GGK+Y
Sbjct: 12 SQICEECVVGKQHRYQFPKGKSWKANKVLELVHSDICGPINPTSNGGKRY 61
Score = 30.8 bits (68), Expect(2) = 2e-07
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 524 TFTDNFSKMSWCYTLTRKSEVFQHF 598
TF D++S+ +W Y L KSE F F
Sbjct: 64 TFIDDYSRKTWVYFLQEKSEAFSTF 88
>emb|CAN76821.1| hypothetical protein VITISV_017285 [Vitis vinifera]
Length = 672
Score = 52.4 bits (124), Expect(2) = 9e-07
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Frame = +1
Query: 373 TQNCEACILAKM*RLPFNQ-KNRKTTKILELIHSNVCESITPASFGGKKYI 522
+Q CE C++ K R F Q K+R+ +LEL+HS++C I P S GGKKY+
Sbjct: 349 SQVCEECVVGKQHRSQFPQGKSRRAKNVLELVHSDICGLINPTSNGGKKYL 399
Score = 26.6 bits (57), Expect(2) = 9e-07
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Frame = +2
Query: 2 SIVGIGDIQLN----FGETTI*LKNTYLVKGLGRSLIYLY*LIHNNYKFLAYQK*GGGIC 169
+++G GDI + F ET + N + V L +L+ L Y + QK G C
Sbjct: 223 NVMGKGDINIRTKNGFVET---ISNVFYVPDLKSNLLSAGQLQEKGY-IITIQK---GAC 275
Query: 170 --YRISRNNKIIA*GIEINGLLVMKPMKIKAFFTE--KENTNLWHRRLGHIN 313
Y SR I + N L +K +++F K+ + LWH R GH+N
Sbjct: 276 EIYDPSRG-AIAVVQMGSNRLFPLKIDSVQSFLMAEVKDLSWLWHLRYGHLN 326
>emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]
Length = 1283
Score = 48.5 bits (114), Expect(3) = 1e-06
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +1
Query: 373 TQNCEACILAKM*RLPFNQ-KNRKTTKILELIHSNVCESITPASFGGKKY 519
+Q CE C++ K R F + K+ + K+LEL+HS++C I P S GGK+Y
Sbjct: 457 SQICEECVVGKQHRYQFPKGKSWRXNKVLELVHSDICGPINPTSNGGKRY 506
Score = 26.9 bits (58), Expect(3) = 1e-06
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 524 TFTDNFSKMSWCYTLTRKSEVFQHF 598
TF ++S +W Y L KSE F F
Sbjct: 509 TFIXDYSXKTWVYFLQEKSEAFSTF 533
Score = 22.3 bits (46), Expect(3) = 1e-06
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 284 LWHRRLGHIN 313
LWH R GH+N
Sbjct: 425 LWHFRYGHLN 434
>ref|XP_006590177.1| PREDICTED: uncharacterized protein LOC102669657 [Glycine max]
Length = 711
Score = 45.8 bits (107), Expect(2) = 1e-06
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +1
Query: 376 QNCEACILAKM*RLPF-NQKNRKTTKILELIHSNVCESITPASFGGKKY 519
Q CE C++ K R F + + TK LELIH++VC I P SFG KY
Sbjct: 373 QLCEGCLIGKQFRKSFPKESTTRATKPLELIHTDVCGPIKPNSFGKNKY 421
Score = 32.3 bits (72), Expect(2) = 1e-06
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 527 FTDNFSKMSWCYTLTRKSEVFQHF 598
F D++S+ +W Y L KSEVF++F
Sbjct: 425 FIDDYSRKTWVYFLKEKSEVFENF 448
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 41.6 bits (96), Expect(2) = 2e-06
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Frame = +2
Query: 5 IVGIGDIQLNFGE-TTI*LKNTYLVKGLGRSLIYLY*LIHNNYKFLAYQK*GGGICYRIS 181
IVGIG +Q+ + T LK+ + G+ R+LI L L YK+ G G ++S
Sbjct: 331 IVGIGSVQIKTHDGITRTLKDVRHIPGMARNLISLSTLDAEGYKYS-----GSGGVVKVS 385
Query: 182 RNNKIIA*G-IEINGLLVMKPMKIKAFFT-------EKENTNLWHRRLGHIN 313
+ + + G + L V++ + T E TNLWH RLGH++
Sbjct: 386 KGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDEPNKTNLWHMRLGHMS 437
Score = 36.2 bits (82), Expect(2) = 2e-06
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 370 NTQNCEACILAKM*RLPFNQKNRKTTKILELIHSNVCESITPASFGGKKYI 522
N + CE C+ K R+ FN +T IL+ +H+++ S GG +Y+
Sbjct: 457 NMKFCERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYM 507
>gb|EFA07743.1| hypothetical protein TcasGA2_TC002223 [Tribolium castaneum]
Length = 1384
Score = 49.7 bits (117), Expect(2) = 2e-06
Identities = 22/46 (47%), Positives = 28/46 (60%)
Frame = +1
Query: 382 CEACILAKM*RLPFNQKNRKTTKILELIHSNVCESITPASFGGKKY 519
C C+ KM R PF +K+ + T LELIHS+VC + S GG KY
Sbjct: 453 CSVCVKGKMARTPFPKKSNRKTSTLELIHSDVCGPMRTQSLGGAKY 498
Score = 28.1 bits (61), Expect(2) = 2e-06
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 263 TEKENTNLWHRRLGHINNT*VSKINDAIIDGPKKSTTLK 379
++K +T L HRRLGH N T + AI +G K +K
Sbjct: 411 SQKVSTKLLHRRLGHPNMT---YVTSAIRNGYLKGVEIK 446
>ref|XP_969432.2| PREDICTED: similar to Copia protein (Gag-int-pol protein)
[Tribolium castaneum]
Length = 1360
Score = 49.7 bits (117), Expect(2) = 2e-06
Identities = 22/46 (47%), Positives = 28/46 (60%)
Frame = +1
Query: 382 CEACILAKM*RLPFNQKNRKTTKILELIHSNVCESITPASFGGKKY 519
C C+ KM R PF +K+ + T LELIHS+VC + S GG KY
Sbjct: 453 CSVCVKGKMARTPFPKKSNRKTSTLELIHSDVCGPMRTQSLGGAKY 498
Score = 28.1 bits (61), Expect(2) = 2e-06
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 263 TEKENTNLWHRRLGHINNT*VSKINDAIIDGPKKSTTLK 379
++K +T L HRRLGH N T + AI +G K +K
Sbjct: 411 SQKVSTKLLHRRLGHPNMT---YVTSAIRNGYLKGVEIK 446
>gb|EFA05312.1| hypothetical protein TcasGA2_TC015470 [Tribolium castaneum]
Length = 2375
Score = 57.8 bits (138), Expect = 2e-06
Identities = 25/52 (48%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Frame = +1
Query: 367 NNTQNCEACILAKM*RLPFNQKN-RKTTKILELIHSNVCESITPASFGGKKY 519
N +Q CE C+ +K+ +LPF +++ KTT++LELIHS++C ITP + GK+Y
Sbjct: 440 NESQICEVCVKSKITKLPFGKRSDNKTTRVLELIHSDLCGPITPETHDGKRY 491
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 41.6 bits (96), Expect(2) = 2e-06
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Frame = +2
Query: 5 IVGIGDIQLNFGE-TTI*LKNTYLVKGLGRSLIYLY*LIHNNYKFLAYQK*GGGICYRIS 181
IVGIG +Q+ + T LK+ + G+ R+LI L L YK+ G G ++S
Sbjct: 331 IVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYS-----GSGGVVKVS 385
Query: 182 RNNKIIA*G-IEINGLLVMKPMKIKAFFT-------EKENTNLWHRRLGHIN 313
+ + + G + L V++ + T E TNLWH RLGH++
Sbjct: 386 KGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDEPSKTNLWHMRLGHMS 437
Score = 35.8 bits (81), Expect(2) = 2e-06
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 370 NTQNCEACILAKM*RLPFNQKNRKTTKILELIHSNVCESITPASFGGKKYI 522
N + CE C+ K R+ FN +T IL+ +H+++ S GG +Y+
Sbjct: 457 NMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYM 507
>emb|CAN71445.1| hypothetical protein VITISV_042489 [Vitis vinifera]
Length = 1246
Score = 47.8 bits (112), Expect(3) = 3e-06
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +1
Query: 373 TQNCEACILAKM*RLPFNQ-KNRKTTKILELIHSNVCESITPASFGGKKY 519
+Q CE C+ K R F + K+ + K+LEL+HS++C I P S GGK+Y
Sbjct: 457 SQICEECVXGKQHRYQFPKGKSWRXNKVLELVHSDICGPINPTSNGGKRY 506
Score = 26.2 bits (56), Expect(3) = 3e-06
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 524 TFTDNFSKMSWCYTLTRKSEVFQHF 598
TF ++S +W Y L KSE F F
Sbjct: 509 TFIXDYSWKTWVYFLQEKSEAFSTF 533
Score = 22.3 bits (46), Expect(3) = 3e-06
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 284 LWHRRLGHIN 313
LWH R GH+N
Sbjct: 425 LWHFRYGHLN 434
>ref|XP_003240529.1| PREDICTED: copia protein-like [Acyrthosiphon pisum]
Length = 1279
Score = 43.9 bits (102), Expect(2) = 4e-06
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = +1
Query: 364 INN---TQNCEACILAKM*RLPFNQKNRKTTKILELIHSNVCESITPASFGGKKY 519
INN + C CI +K LPF+ + T+ LELIHS+VC I P ++ K+Y
Sbjct: 441 INNEKYNEICGVCISSKQAALPFSGTRVRATRPLELIHSDVCGPIEPQTWDNKRY 495
Score = 32.7 bits (73), Expect(2) = 4e-06
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 254 AFFTEKENTNLWHRRLGHINNT*VSKINDAIIDG 355
A ++ +LWHRRLGH+N + K+ D I+DG
Sbjct: 406 ANYSYSNTIDLWHRRLGHLNFQTLEKLPD-IVDG 438
>ref|XP_004237308.1| PREDICTED: uncharacterized protein LOC101266020 [Solanum
lycopersicum]
Length = 771
Score = 42.4 bits (98), Expect(2) = 5e-06
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 361 KINNTQNCEACILAKM*RLPFNQKNRKTT-KILELIHSNVCESITPASFGGKKYI 522
K + CEAC+ K R F KN+ T+ + LEL+H ++C + S GKKYI
Sbjct: 467 KFAENKICEACVKGKQIRSSFKPKNQVTSSRTLELLHMDLCGPLKVQSRNGKKYI 521
Score = 33.9 bits (76), Expect(2) = 5e-06
Identities = 11/23 (47%), Positives = 20/23 (86%)
Frame = +2
Query: 266 EKENTNLWHRRLGHINNT*VSKI 334
+ EN +LWHRRLGH++++ ++K+
Sbjct: 432 QNENADLWHRRLGHVSSSLLNKL 454
>ref|XP_004248624.1| PREDICTED: uncharacterized protein LOC101255637 [Solanum
lycopersicum]
Length = 703
Score = 42.4 bits (98), Expect(2) = 5e-06
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 361 KINNTQNCEACILAKM*RLPFNQKNRKTT-KILELIHSNVCESITPASFGGKKYI 522
K + CEAC+ K R F KN+ T+ + LEL+H ++C + S GKKYI
Sbjct: 516 KFAENKICEACVKGKQIRSSFKPKNQVTSSRTLELLHMDLCGPLKVQSRNGKKYI 570
Score = 33.9 bits (76), Expect(2) = 5e-06
Identities = 11/23 (47%), Positives = 20/23 (86%)
Frame = +2
Query: 266 EKENTNLWHRRLGHINNT*VSKI 334
+ EN +LWHRRLGH++++ ++K+
Sbjct: 481 QNENVDLWHRRLGHVSSSLLNKL 503