BLASTX nr result
ID: Ephedra25_contig00024099
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra25_contig00024099 (767 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABN08974.1| gag-pol polyprotein, putative [Medicago truncatula] 197 2e-56 gb|AAO73529.1| gag-pol polyprotein [Glycine max] 189 2e-55 gb|AAO73527.1| gag-pol polyprotein [Glycine max] 189 3e-55 gb|AAO73521.1| gag-pol polyprotein [Glycine max] 189 3e-55 ref|XP_006577547.1| PREDICTED: uncharacterized protein LOC102662... 188 7e-55 gb|AAO73523.1| gag-pol polyprotein [Glycine max] 186 2e-54 gb|AAO73525.1| gag-pol polyprotein [Glycine max] 189 5e-54 gb|AAC64917.1| gag-pol polyprotein [Glycine max] 188 2e-53 gb|AAN40030.1| putative gag-pol polyprotein [Zea mays] 186 4e-52 gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-ty... 188 4e-52 gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana] 188 1e-51 gb|AAP53706.1| retrotransposon protein, putative, unclassified [... 183 5e-51 gb|ABM55238.1| integrase [Beta vulgaris] 181 1e-50 gb|ABH08430.1| putative integrase [Beta vulgaris] 181 1e-50 gb|ABA98230.2| retrotransposon protein, putative, unclassified [... 181 2e-50 gb|AAO37468.1| putative polyprotein [Oryza sativa Japonica Group] 179 3e-50 gb|ABF96984.1| retrotransposon protein, putative, Ty1-copia subc... 179 3e-50 gb|AAX96565.1| retrotransposon protein, putative, Ty1-copia sub-... 179 1e-49 ref|XP_004310161.1| PREDICTED: uncharacterized protein LOC101309... 174 2e-49 gb|AAT85178.1| putative polyprotein [Oryza sativa Japonica Group... 174 2e-49 >gb|ABN08974.1| gag-pol polyprotein, putative [Medicago truncatula] Length = 469 Score = 197 bits (501), Expect(2) = 2e-56 Identities = 94/212 (44%), Positives = 144/212 (67%) Frame = +3 Query: 9 YEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFSNSNDEVRGEFVKKMEE 188 YE+L FL+ G++K D TL+V + ++I QIYVDDIVF ++++ FV++M+ Sbjct: 142 YERLTEFLINQGYKKGGTDKTLFVKKEHGGVMIAQIYVDDIVFGGMSNQMVQHFVQQMQS 201 Query: 189 SFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIINTPMATRMILEK 368 FEMS+ +L +FLG+Q Q + F+SQ Y KN+VR FG+D TP AT + L K Sbjct: 202 EFEMSLVGELTYFLGLQIRQMEDTIFISQSKYAKNIVRKFGLDNASHKRTPTATHLKLSK 261 Query: 369 NEEEDQLDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLDE 548 +E +D SLYRS+I SL+Y+TA+RPDI+FA+G+ +R+QA+P++SH KRIL+Y++ Sbjct: 262 DENGVAVDQSLYRSMIGSLLYLTASRPDITFAVGVCARYQAEPKMSHLAQVKRILKYVNG 321 Query: 549 TTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 644 TT+ G+ Y+ + +L GY D++W G+ D+K Sbjct: 322 TTDYGVLYSHSNNSQLIGYCDADWAGSADDRK 353 Score = 49.3 bits (116), Expect(2) = 2e-56 Identities = 23/42 (54%), Positives = 31/42 (73%) Frame = +1 Query: 640 KSTSGYYFMMGNTPITWTSRKQQCVALSTSKAEYITAANSAS 765 KSTSG F +GN ++W S+KQ V+LST++AEYI A +S S Sbjct: 353 KSTSGGCFFLGNNLVSWFSKKQNSVSLSTAEAEYIAAESSCS 394 >gb|AAO73529.1| gag-pol polyprotein [Glycine max] Length = 1577 Score = 189 bits (481), Expect(2) = 2e-55 Identities = 92/212 (43%), Positives = 143/212 (67%) Frame = +3 Query: 9 YEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFSNSNDEVRGEFVKKMEE 188 YE+L FL + G++K +D TL+V + +++I QIYVDDIVF ++E+ FV++M+ Sbjct: 1226 YERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQS 1285 Query: 189 SFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIINTPMATRMILEK 368 FEMS+ +L +FLG+Q Q + F+SQ Y KN+V+ FG++ TP T + L K Sbjct: 1286 EFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSK 1345 Query: 369 NEEEDQLDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLDE 548 +E +D SLYRS+I SL+Y+TA+RPDI++A+G+ +R+QA+P+ISH KRIL+Y++ Sbjct: 1346 DEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNG 1405 Query: 549 TTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 644 T++ G+ Y S L GY D++W G+ D+K Sbjct: 1406 TSDYGIMYCHCSGSMLVGYCDADWAGSADDRK 1437 Score = 53.5 bits (127), Expect(2) = 2e-55 Identities = 25/42 (59%), Positives = 32/42 (76%) Frame = +1 Query: 640 KSTSGYYFMMGNTPITWTSRKQQCVALSTSKAEYITAANSAS 765 KSTSG F +GN I+W S+KQ CV+LST++AEYI A +S S Sbjct: 1437 KSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCS 1478 >gb|AAO73527.1| gag-pol polyprotein [Glycine max] Length = 1576 Score = 189 bits (480), Expect(2) = 3e-55 Identities = 92/212 (43%), Positives = 143/212 (67%) Frame = +3 Query: 9 YEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFSNSNDEVRGEFVKKMEE 188 YE+L FL + G++K +D TL+V + +++I QIYVDDIVF ++E+ FV++M+ Sbjct: 1225 YERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQS 1284 Query: 189 SFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIINTPMATRMILEK 368 FEMS+ +L +FLG+Q Q + F+SQ Y KN+V+ FG++ TP T + L K Sbjct: 1285 EFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSK 1344 Query: 369 NEEEDQLDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLDE 548 +E +D SLYRS+I SL+Y+TA+RPDI++A+G+ +R+QA+P+ISH KRIL+Y++ Sbjct: 1345 DEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNG 1404 Query: 549 TTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 644 T++ G+ Y S L GY D++W G+ D+K Sbjct: 1405 TSDYGIMYCHCSNPMLVGYCDADWAGSADDRK 1436 Score = 53.5 bits (127), Expect(2) = 3e-55 Identities = 25/42 (59%), Positives = 32/42 (76%) Frame = +1 Query: 640 KSTSGYYFMMGNTPITWTSRKQQCVALSTSKAEYITAANSAS 765 KSTSG F +GN I+W S+KQ CV+LST++AEYI A +S S Sbjct: 1436 KSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCS 1477 >gb|AAO73521.1| gag-pol polyprotein [Glycine max] Length = 1574 Score = 189 bits (480), Expect(2) = 3e-55 Identities = 92/212 (43%), Positives = 143/212 (67%) Frame = +3 Query: 9 YEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFSNSNDEVRGEFVKKMEE 188 YE+L FL + G++K +D TL+V + +++I QIYVDDIVF ++E+ FV++M+ Sbjct: 1223 YERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQS 1282 Query: 189 SFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIINTPMATRMILEK 368 FEMS+ +L +FLG+Q Q + F+SQ Y KN+V+ FG++ TP T + L K Sbjct: 1283 EFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSK 1342 Query: 369 NEEEDQLDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLDE 548 +E +D SLYRS+I SL+Y+TA+RPDI++A+G+ +R+QA+P+ISH KRIL+Y++ Sbjct: 1343 DEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNG 1402 Query: 549 TTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 644 T++ G+ Y S L GY D++W G+ D+K Sbjct: 1403 TSDYGIMYCHCSNPMLVGYCDADWAGSADDRK 1434 Score = 53.5 bits (127), Expect(2) = 3e-55 Identities = 25/42 (59%), Positives = 32/42 (76%) Frame = +1 Query: 640 KSTSGYYFMMGNTPITWTSRKQQCVALSTSKAEYITAANSAS 765 KSTSG F +GN I+W S+KQ CV+LST++AEYI A +S S Sbjct: 1434 KSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCS 1475 >ref|XP_006577547.1| PREDICTED: uncharacterized protein LOC102662042 [Glycine max] Length = 1857 Score = 188 bits (478), Expect(2) = 7e-55 Identities = 93/212 (43%), Positives = 142/212 (66%) Frame = +3 Query: 9 YEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFSNSNDEVRGEFVKKMEE 188 YE+L FL + G++K +D TL V + +++I QIYVDDIVF ++E+ FV++M+ Sbjct: 1521 YERLTKFLTQQGYRKGGIDKTLLVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQF 1580 Query: 189 SFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIINTPMATRMILEK 368 FEMS+ +L +FLG+Q Q + F+SQ Y KN+V+ FG++ TP T + L K Sbjct: 1581 EFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSK 1640 Query: 369 NEEEDQLDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLDE 548 +E +D SLYRS+I SL+Y+TA+RPDI+FA+G+ +R+QA+P+ISH KRIL+Y++ Sbjct: 1641 DEAGTSVDQSLYRSMIGSLLYLTASRPDITFAVGVCARYQANPKISHLNQVKRILKYVNG 1700 Query: 549 TTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 644 T++ G+ Y S L GY D++W G+ D+K Sbjct: 1701 TSDYGIMYCHCSDSMLVGYCDADWVGSADDRK 1732 Score = 52.8 bits (125), Expect(2) = 7e-55 Identities = 25/42 (59%), Positives = 31/42 (73%) Frame = +1 Query: 640 KSTSGYYFMMGNTPITWTSRKQQCVALSTSKAEYITAANSAS 765 KSTSG F +GN I W S+KQ CV+LST++AEYI A +S S Sbjct: 1732 KSTSGGGFYLGNNLIAWFSKKQNCVSLSTAEAEYIAAGSSCS 1773 >gb|AAO73523.1| gag-pol polyprotein [Glycine max] Length = 1576 Score = 186 bits (472), Expect(2) = 2e-54 Identities = 90/212 (42%), Positives = 141/212 (66%) Frame = +3 Query: 9 YEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFSNSNDEVRGEFVKKMEE 188 YE+L FL + G++K +D TL+V + +++I QIYVDDIVF ++E+ FV++M+ Sbjct: 1225 YERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQS 1284 Query: 189 SFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIINTPMATRMILEK 368 FEMS+ +L +FLG+Q Q + F+SQ Y KN+V+ FG++ TP T + L K Sbjct: 1285 EFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSK 1344 Query: 369 NEEEDQLDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLDE 548 +E +D YRS+I SL+Y+TA+RPDI++A+G+ +R+QA+P+ISH KRIL+Y++ Sbjct: 1345 DEAGTSVDQKPYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNG 1404 Query: 549 TTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 644 T++ G+ Y S L GY D++W G+ D+K Sbjct: 1405 TSDYGIMYCHCSSSMLVGYCDADWAGSADDRK 1436 Score = 53.5 bits (127), Expect(2) = 2e-54 Identities = 25/42 (59%), Positives = 32/42 (76%) Frame = +1 Query: 640 KSTSGYYFMMGNTPITWTSRKQQCVALSTSKAEYITAANSAS 765 KSTSG F +GN I+W S+KQ CV+LST++AEYI A +S S Sbjct: 1436 KSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCS 1477 >gb|AAO73525.1| gag-pol polyprotein [Glycine max] Length = 1576 Score = 189 bits (480), Expect(2) = 5e-54 Identities = 92/212 (43%), Positives = 142/212 (66%) Frame = +3 Query: 9 YEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFSNSNDEVRGEFVKKMEE 188 YE+L FL + G++K +D TL+V + +++I QIYVDDIVF ++E+ FV +M+ Sbjct: 1225 YERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVPQMQS 1284 Query: 189 SFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIINTPMATRMILEK 368 FEMS+ +L +FLG+Q Q + F+SQ Y KN+V+ FG++ TP T + L K Sbjct: 1285 EFEMSLVGELHYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSK 1344 Query: 369 NEEEDQLDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLDE 548 +E +D +LYRS+I SL+Y+TA+RPDI+FA+G+ +R+QA+P+ISH KRIL+Y++ Sbjct: 1345 DEAGTSVDQNLYRSMIGSLLYLTASRPDITFAVGVCARYQANPKISHLNQVKRILKYVNG 1404 Query: 549 TTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 644 T++ G+ Y S L GY D++W G+ D+K Sbjct: 1405 TSDYGIMYCHCSDSMLVGYCDADWAGSADDRK 1436 Score = 49.3 bits (116), Expect(2) = 5e-54 Identities = 23/42 (54%), Positives = 30/42 (71%) Frame = +1 Query: 640 KSTSGYYFMMGNTPITWTSRKQQCVALSTSKAEYITAANSAS 765 K TSG F +G I+W S+KQ CV+LST++AEYI A +S S Sbjct: 1436 KCTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCS 1477 >gb|AAC64917.1| gag-pol polyprotein [Glycine max] Length = 1550 Score = 188 bits (477), Expect(2) = 2e-53 Identities = 92/212 (43%), Positives = 142/212 (66%) Frame = +3 Query: 9 YEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFSNSNDEVRGEFVKKMEE 188 YE+L FL + G++K +D TL+V + +++I QIYVDDIVF ++E+ FV++M+ Sbjct: 1199 YERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQS 1258 Query: 189 SFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIINTPMATRMILEK 368 FEMS+ +L +FLG+Q Q + F+SQ Y KN+V+ FG++ TP T + L K Sbjct: 1259 EFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSK 1318 Query: 369 NEEEDQLDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLDE 548 +E +D SLYRS+I SL+Y+TA+RPDI++A+G +R+QA+P+ISH KRIL+Y++ Sbjct: 1319 DEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGGCARYQANPKISHLNQVKRILKYVNG 1378 Query: 549 TTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 644 T++ G+ Y S L GY D++W G+ D+K Sbjct: 1379 TSDYGIMYCHCSDSMLVGYCDADWAGSVDDRK 1410 Score = 48.5 bits (114), Expect(2) = 2e-53 Identities = 23/42 (54%), Positives = 30/42 (71%) Frame = +1 Query: 640 KSTSGYYFMMGNTPITWTSRKQQCVALSTSKAEYITAANSAS 765 KST G F +G I+W S+KQ CV+LST++AEYI A +S S Sbjct: 1410 KSTFGGCFYLGTNFISWFSKKQNCVSLSTAEAEYIAAGSSCS 1451 >gb|AAN40030.1| putative gag-pol polyprotein [Zea mays] Length = 2319 Score = 186 bits (471), Expect(2) = 4e-52 Identities = 95/212 (44%), Positives = 136/212 (64%) Frame = +3 Query: 9 YEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFSNSNDEVRGEFVKKMEE 188 Y+ L FL+K GF D+TL+ + +N + +CQIYVDDI+F ++N++ EF K M Sbjct: 1470 YDCLKDFLIKNGFTIGKADSTLFTRKVDNELFVCQIYVDDIIFGSTNEKFCEEFSKVMTN 1529 Query: 189 SFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIINTPMATRMILEK 368 FEMSM +LK+FLG Q Q GTF+ Q Y ++M++ FG++ K TPM + L+ Sbjct: 1530 RFEMSMMGELKYFLGFQVKQLKEGTFLCQTKYTQDMLKKFGMEKAKHAKTPMPSNGHLDL 1589 Query: 369 NEEEDQLDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLDE 548 NEE +D LYRS+I SL+Y+ A+RPDI ++ + +RFQA+P+ H KRILRYL Sbjct: 1590 NEEGKPVDQKLYRSMIGSLLYLCASRPDIMLSVCMCARFQANPKDCHLVAVKRILRYLVH 1649 Query: 549 TTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 644 T NLGL+Y S ++L GY DS++ G D+K Sbjct: 1650 TQNLGLWYPKGSFFDLLGYSDSDYAGCKVDRK 1681 Score = 46.2 bits (108), Expect(2) = 4e-52 Identities = 20/37 (54%), Positives = 29/37 (78%) Frame = +1 Query: 640 KSTSGYYFMMGNTPITWTSRKQQCVALSTSKAEYITA 750 KST+G +G + ++W+S+KQ CVALST++AEYI A Sbjct: 1681 KSTTGTCQFLGRSLVSWSSKKQNCVALSTAEAEYIAA 1717 >gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic [Medicago truncatula] Length = 1715 Score = 188 bits (478), Expect(2) = 4e-52 Identities = 95/212 (44%), Positives = 137/212 (64%) Frame = +3 Query: 9 YEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFSNSNDEVRGEFVKKMEE 188 Y++L FL+K F++ +DTTL+ + ILI QIYVDDI+F ++N + EF K M++ Sbjct: 1365 YDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQD 1424 Query: 189 SFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIINTPMATRMILEK 368 FEMSM +LK FLGIQ QS G +V Q Y K +++ F ++ K++NTPM L K Sbjct: 1425 EFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSK 1484 Query: 369 NEEEDQLDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLDE 548 + +D LYR +I SL+Y+TA+RPDI F++ L +RFQ+DPR SH KRI RYL Sbjct: 1485 EDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKG 1544 Query: 549 TTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 644 TTNLGL Y ++L G+ D+++ G+ ++K Sbjct: 1545 TTNLGLLYRKSLDYKLIGFCDADYAGDRIERK 1576 Score = 43.5 bits (101), Expect(2) = 4e-52 Identities = 19/42 (45%), Positives = 31/42 (73%) Frame = +1 Query: 631 LKTKSTSGYYFMMGNTPITWTSRKQQCVALSTSKAEYITAAN 756 ++ KSTSG +G I+W S++Q +A+ST++AEYI+AA+ Sbjct: 1573 IERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAAS 1614 >gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana] Length = 1643 Score = 188 bits (477), Expect(2) = 1e-51 Identities = 93/212 (43%), Positives = 140/212 (66%) Frame = +3 Query: 9 YEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFSNSNDEVRGEFVKKMEE 188 YE+L TFL+ G+ + ++D TL+V + I+I QIYVDDIVF ++D++ FVK M Sbjct: 1294 YERLTTFLIVQGYTRGSVDKTLFVKNDVHGIIIIQIYVDDIVFGGTSDKLVKTFVKTMTT 1353 Query: 189 SFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIINTPMATRMILEK 368 F MSM +LK+FLG+Q Q+D G +SQ Y +N+V+ FG+ K TPM+T L K Sbjct: 1354 EFRMSMVGELKYFLGLQINQTDEGITISQSTYAQNLVKRFGMCSSKPAPTPMSTTTKLFK 1413 Query: 369 NEEEDQLDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLDE 548 +E+ ++D LYR +I SL+Y+TATRPD+ ++GL +R+Q++P+ SH KRI++Y+ Sbjct: 1414 DEKGVKVDEKLYRGMIGSLLYLTATRPDLCLSVGLCARYQSNPKASHLLAVKRIIKYVSG 1473 Query: 549 TTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 644 T N GL Y ++ L GY D++W GN D++ Sbjct: 1474 TINYGLNYTRDTSLVLVGYCDADWGGNLDDRR 1505 Score = 42.4 bits (98), Expect(2) = 1e-51 Identities = 17/35 (48%), Positives = 28/35 (80%) Frame = +1 Query: 640 KSTSGYYFMMGNTPITWTSRKQQCVALSTSKAEYI 744 +ST+G F +G+ I+W S+KQ CV+LS++++EYI Sbjct: 1505 RSTTGGVFFLGSNLISWHSKKQNCVSLSSTQSEYI 1539 >gb|AAP53706.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] Length = 1419 Score = 183 bits (465), Expect(2) = 5e-51 Identities = 94/212 (44%), Positives = 139/212 (65%) Frame = +3 Query: 9 YEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFSNSNDEVRGEFVKKMEE 188 Y++L FLL GF +D TL+VL+ ++ L QIYVDDI+F S V +F + M Sbjct: 1067 YDRLKNFLLAKGFTMGKVDKTLFVLKHGDNQLFVQIYVDDIIFGCSTHAVVVDFAETMRR 1126 Query: 189 SFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIINTPMATRMILEK 368 FEMSM +L +FLG+Q Q+ GTFV Q Y K+++R F ++ K I+TP+ + +L+ Sbjct: 1127 EFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFKMENCKPISTPIGSTAVLDP 1186 Query: 369 NEEEDQLDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLDE 548 +E+ + +D YRS+I SL+Y+TA+RPDI FA+ L +RFQA PR SH Q KRI+RYL+ Sbjct: 1187 DEDGEAVDQKEYRSMIGSLLYLTASRPDIQFAVCLCARFQASPRASHRQAVKRIMRYLNH 1246 Query: 549 TTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 644 T G++Y++ S L+GY D+++ G D+K Sbjct: 1247 TLEFGIWYSTSSSICLSGYSDADFGGCRIDRK 1278 Score = 45.1 bits (105), Expect(2) = 5e-51 Identities = 22/49 (44%), Positives = 31/49 (63%) Frame = +1 Query: 619 GQAILKTKSTSGYYFMMGNTPITWTSRKQQCVALSTSKAEYITAANSAS 765 G + KSTSG +G + I W+SRKQ VA ST+++EY+ AA+ S Sbjct: 1271 GGCRIDRKSTSGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAASCCS 1319 >gb|ABM55238.1| integrase [Beta vulgaris] Length = 1516 Score = 181 bits (460), Expect(2) = 1e-50 Identities = 88/212 (41%), Positives = 140/212 (66%) Frame = +3 Query: 9 YEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFSNSNDEVRGEFVKKMEE 188 YE+L FLL+ F++ +D TL++ + IL+ QIYVDDI+F +N+ + EF + + Sbjct: 1167 YERLSKFLLENNFKRGKVDKTLFLKSKGTDILLVQIYVDDIIFGATNETLCKEFSRLVSN 1226 Query: 189 SFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIINTPMATRMILEK 368 FEMSM +L FLG+Q Q++ G V Q+ Y+K +++ +G++ KI +TPM T L++ Sbjct: 1227 EFEMSMMGELNFFLGLQIKQTEKGIIVHQQKYIKELLKKYGLENSKINHTPMGTSTRLDE 1286 Query: 369 NEEEDQLDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLDE 548 + +D + YR +I L+Y+TA+RPDI+F++GL +RFQA+P+ SH KRILRYL Sbjct: 1287 DSIGTSVDQTKYRGMIGLLLYLTASRPDIAFSVGLCARFQANPKESHLTAVKRILRYLKG 1346 Query: 549 TTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 644 T +LGL+Y +EL GY D+++ G+ ++K Sbjct: 1347 TDDLGLYYPRSDTFELKGYADADYAGDLVNRK 1378 Score = 45.4 bits (106), Expect(2) = 1e-50 Identities = 20/46 (43%), Positives = 33/46 (71%) Frame = +1 Query: 628 ILKTKSTSGYYFMMGNTPITWTSRKQQCVALSTSKAEYITAANSAS 765 ++ KSTSG +G++ ++W+++KQ VALST++AEY+ AA S Sbjct: 1374 LVNRKSTSGMAQFLGHSLVSWSTKKQNTVALSTAEAEYVAAAACCS 1419 >gb|ABH08430.1| putative integrase [Beta vulgaris] Length = 1516 Score = 181 bits (460), Expect(2) = 1e-50 Identities = 88/212 (41%), Positives = 140/212 (66%) Frame = +3 Query: 9 YEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFSNSNDEVRGEFVKKMEE 188 YE+L FLL+ F++ +D TL++ + IL+ QIYVDDI+F +N+ + EF + + Sbjct: 1167 YERLSKFLLENNFKRGKVDKTLFLKSKGTDILLVQIYVDDIIFGATNETLCKEFSRLVSN 1226 Query: 189 SFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIINTPMATRMILEK 368 FEMSM +L FLG+Q Q++ G V Q+ Y+K +++ +G++ KI +TPM T L++ Sbjct: 1227 EFEMSMMGELNFFLGLQIKQTEKGIIVHQQKYIKELLKKYGLENSKINHTPMGTSTRLDE 1286 Query: 369 NEEEDQLDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLDE 548 + +D + YR +I L+Y+TA+RPDI+F++GL +RFQA+P+ SH KRILRYL Sbjct: 1287 DSIGTSVDQTKYRGMIGLLLYLTASRPDIAFSVGLCARFQANPKESHLTAVKRILRYLKG 1346 Query: 549 TTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 644 T +LGL+Y +EL GY D+++ G+ ++K Sbjct: 1347 TDDLGLYYPRSDTFELKGYADADYAGDLVNRK 1378 Score = 45.4 bits (106), Expect(2) = 1e-50 Identities = 20/46 (43%), Positives = 33/46 (71%) Frame = +1 Query: 628 ILKTKSTSGYYFMMGNTPITWTSRKQQCVALSTSKAEYITAANSAS 765 ++ KSTSG +G++ ++W+++KQ VALST++AEY+ AA S Sbjct: 1374 LVNRKSTSGMAQFLGHSLVSWSTKKQNTVALSTAEAEYVAAAACCS 1419 >gb|ABA98230.2| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] Length = 1463 Score = 181 bits (460), Expect(2) = 2e-50 Identities = 93/212 (43%), Positives = 139/212 (65%) Frame = +3 Query: 9 YEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFSNSNDEVRGEFVKKMEE 188 Y++L FLL GF +D TL+VL+ ++ L QIYVDDI+F S + +F + M Sbjct: 1111 YDRLKNFLLAKGFIMGKVDKTLFVLKHGDNQLFVQIYVDDIIFGCSTHALVVDFAETMRR 1170 Query: 189 SFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIINTPMATRMILEK 368 FEMSM +L +FLG+Q Q+ GTFV Q Y K+++R F ++ K I+TP+ + +L+ Sbjct: 1171 EFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFKMENCKPISTPIGSTAVLDP 1230 Query: 369 NEEEDQLDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLDE 548 +E+ + +D YRS+I SL+Y+TA+RPDI FA+ L +RFQA PR SH Q KRI+RYL+ Sbjct: 1231 DEDGEAVDQKEYRSMIGSLLYLTASRPDIQFAVCLCARFQASPRASHRQAVKRIMRYLNH 1290 Query: 549 TTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 644 T G++Y++ S L+GY D+++ G D+K Sbjct: 1291 TLEFGIWYSTSSSICLSGYSDADFGGCRIDRK 1322 Score = 44.7 bits (104), Expect(2) = 2e-50 Identities = 21/49 (42%), Positives = 31/49 (63%) Frame = +1 Query: 619 GQAILKTKSTSGYYFMMGNTPITWTSRKQQCVALSTSKAEYITAANSAS 765 G + KSTSG +G + I W+SRKQ +A ST+++EY+ AA+ S Sbjct: 1315 GGCRIDRKSTSGTCHFLGTSLIAWSSRKQSSIAQSTAESEYVAAASCCS 1363 >gb|AAO37468.1| putative polyprotein [Oryza sativa Japonica Group] Length = 1128 Score = 179 bits (455), Expect(2) = 3e-50 Identities = 93/212 (43%), Positives = 135/212 (63%) Frame = +3 Query: 9 YEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFSNSNDEVRGEFVKKMEE 188 YE+L FLL F+ +DTTL+ + +CQIYVDDI+F ++N+ EF M Sbjct: 774 YERLRDFLLSKDFKIGKVDTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSR 833 Query: 189 SFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIINTPMATRMILEK 368 FEMSM ++L FLG+Q Q GTFVSQ Y+K++++ FG++ K I TPMAT L+ Sbjct: 834 EFEMSMIEELSFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNWHLDL 893 Query: 369 NEEEDQLDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLDE 548 +E +D LYRS+I SL+Y+TA+RPDI F++ + +RFQA P+ H KRILRYL Sbjct: 894 DEGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMYARFQAAPKECHLVAVKRILRYLKH 953 Query: 549 TTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 644 ++ + L+Y + ++L GY DS++ G D+K Sbjct: 954 SSTISLWYPKGAKFKLVGYSDSDYAGYKVDRK 985 Score = 46.2 bits (108), Expect(2) = 3e-50 Identities = 21/39 (53%), Positives = 31/39 (79%) Frame = +1 Query: 640 KSTSGYYFMMGNTPITWTSRKQQCVALSTSKAEYITAAN 756 KSTSG M+G + ++W+S+KQ VALST++AEYI+A + Sbjct: 985 KSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYISAGS 1023 >gb|ABF96984.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1115 Score = 179 bits (455), Expect(2) = 3e-50 Identities = 93/212 (43%), Positives = 135/212 (63%) Frame = +3 Query: 9 YEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFSNSNDEVRGEFVKKMEE 188 YE+L FLL F+ +DTTL+ + +CQIYVDDI+F ++N+ EF M Sbjct: 761 YERLRDFLLSKDFKIGKVDTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSR 820 Query: 189 SFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIINTPMATRMILEK 368 FEMSM ++L FLG+Q Q GTFVSQ Y+K++++ FG++ K I TPMAT L+ Sbjct: 821 EFEMSMIEELSFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNWHLDL 880 Query: 369 NEEEDQLDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLDE 548 +E +D LYRS+I SL+Y+TA+RPDI F++ + +RFQA P+ H KRILRYL Sbjct: 881 DEGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMYARFQAAPKECHLVAVKRILRYLKH 940 Query: 549 TTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 644 ++ + L+Y + ++L GY DS++ G D+K Sbjct: 941 SSTISLWYPKGAKFKLVGYSDSDYAGYKVDRK 972 Score = 46.2 bits (108), Expect(2) = 3e-50 Identities = 21/39 (53%), Positives = 31/39 (79%) Frame = +1 Query: 640 KSTSGYYFMMGNTPITWTSRKQQCVALSTSKAEYITAAN 756 KSTSG M+G + ++W+S+KQ VALST++AEYI+A + Sbjct: 972 KSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYISAGS 1010 >gb|AAX96565.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa Japonica Group] gi|77552672|gb|ABA95469.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 709 Score = 179 bits (453), Expect(2) = 1e-49 Identities = 93/212 (43%), Positives = 137/212 (64%) Frame = +3 Query: 9 YEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFSNSNDEVRGEFVKKMEE 188 Y++L FLL GF D TL+VL+ ++ L QIYVDDI+F S + +F + M Sbjct: 357 YDRLKNFLLAKGFTMGKFDKTLFVLKHGDNQLFVQIYVDDIIFGCSIHALVVDFAETMRR 416 Query: 189 SFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIINTPMATRMILEK 368 FEMSM +L +FLG+Q Q+ GTFV Q Y K+++R F ++ K I+TP+ + +L+ Sbjct: 417 EFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFKMENCKPISTPIGSTAVLDP 476 Query: 369 NEEEDQLDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLDE 548 +E+ +D YRS+I SL+Y+TA+RPDI FA+ L +RFQA PR SH Q KRI+RYL+ Sbjct: 477 DEDGKAVDQKEYRSMIGSLLYLTASRPDIQFAVCLRARFQASPRASHRQAVKRIMRYLNH 536 Query: 549 TTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 644 T G++Y++ S L+GY D+++ G D+K Sbjct: 537 TLEFGIWYSTSSSICLSGYSDADFGGCRIDRK 568 Score = 45.1 bits (105), Expect(2) = 1e-49 Identities = 22/49 (44%), Positives = 31/49 (63%) Frame = +1 Query: 619 GQAILKTKSTSGYYFMMGNTPITWTSRKQQCVALSTSKAEYITAANSAS 765 G + KSTSG +G + I W+SRKQ VA ST+++EY+ AA+ S Sbjct: 561 GGCRIDRKSTSGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAASCCS 609 >ref|XP_004310161.1| PREDICTED: uncharacterized protein LOC101309698 [Fragaria vesca subsp. vesca] Length = 1541 Score = 174 bits (442), Expect(2) = 2e-49 Identities = 82/212 (38%), Positives = 140/212 (66%) Frame = +3 Query: 9 YEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFSNSNDEVRGEFVKKMEE 188 YE+L L+ +G+ + ++D T++V I+I QIYVDDIVF +++ + EF + M++ Sbjct: 1192 YERLSNHLVDHGYVRGSVDKTMFVKCTTEHIIIAQIYVDDIVFGSTSPSLVNEFTELMKK 1251 Query: 189 SFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIINTPMATRMILEK 368 FEMS+ +L +FLG+Q +Q+ G F+ Q Y +++V+ FG++ TPM+T + Sbjct: 1252 EFEMSLCGKLSYFLGLQVMQNQNGLFICQSKYAQDLVKKFGMETATAFPTPMSTSCKISA 1311 Query: 369 NEEEDQLDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLDE 548 + +D + YRS+I SLMY+TA+RPDI++++G+ +R+QA+P+ SH + KRI+RY+ Sbjct: 1312 DMSGINVDQTNYRSMIGSLMYLTASRPDIAYSVGVCARYQANPKQSHVKAVKRIIRYVAG 1371 Query: 549 TTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 644 T + G+ Y ++ E+ GY DS+W G+ D+K Sbjct: 1372 TLDHGIKYTFDTNVEIAGYTDSDWAGDANDRK 1403 Score = 48.1 bits (113), Expect(2) = 2e-49 Identities = 20/39 (51%), Positives = 29/39 (74%) Frame = +1 Query: 640 KSTSGYYFMMGNTPITWTSRKQQCVALSTSKAEYITAAN 756 KSTSG F +GN ++W S+KQ C +LST++AEY+ A + Sbjct: 1403 KSTSGGCFFVGNNLVSWHSKKQNCTSLSTAQAEYVAAGS 1441 >gb|AAT85178.1| putative polyprotein [Oryza sativa Japonica Group] gi|51038241|gb|AAT94044.1| putative polyprotein [Oryza sativa Japonica Group] Length = 1398 Score = 174 bits (442), Expect(2) = 2e-49 Identities = 91/212 (42%), Positives = 136/212 (64%) Frame = +3 Query: 9 YEKLDTFLLKYGFQKSTLDTTLYVLRRENSILICQIYVDDIVFSNSNDEVRGEFVKKMEE 188 Y++L FLL GF +D T++VL+ ++ L QIYVDDI+FS S + +F + M Sbjct: 1046 YDRLKNFLLAKGFTMGKVDKTIFVLKHGDNQLFVQIYVDDIIFSCSTHALVVDFAEIMRR 1105 Query: 189 SFEMSMYQQLKHFLGIQTVQSDLGTFVSQRLYVKNMVR*FGIDGVKIINTPMATRMILEK 368 FEMSM +L +FLG+Q Q+ GTFV Q Y K+++R + K I+TP+ + +L+ Sbjct: 1106 EFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRLKMKNCKPISTPIGSTAMLDP 1165 Query: 369 NEEEDQLDGSLYRSIIDSLMYVTATRPDISFAIGLVSRFQADPRISHFQVAKRILRYLDE 548 +E+ + +D YRS+I L+Y+TA+RPDI FA+ L +RFQA PR SH Q KRI+RYL+ Sbjct: 1166 DEDGEAVDQKEYRSMIGFLLYLTASRPDIQFAVCLCARFQASPRASHRQAVKRIMRYLNH 1225 Query: 549 TTNLGLFYNSESIWELTGYIDSNWTGNTKDKK 644 T G+ Y++ S L+GY D+++ G D+K Sbjct: 1226 TLEFGICYSTSSSICLSGYSDADFGGCRIDRK 1257 Score = 48.1 bits (113), Expect(2) = 2e-49 Identities = 23/49 (46%), Positives = 32/49 (65%) Frame = +1 Query: 619 GQAILKTKSTSGYYFMMGNTPITWTSRKQQCVALSTSKAEYITAANSAS 765 G + KSTSG + +G + I W+SRKQ VA ST+K+EY+ AA+ S Sbjct: 1250 GGCRIDRKSTSGTCYFLGTSLIAWSSRKQSSVAQSTAKSEYVAAASCCS 1298