BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00023371
         (736 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi...   139   3e-47
ref|XP_005714683.1| unnamed protein product [Chondrus crispus] g...   130   4e-44
ref|XP_005715938.1| unnamed protein product [Chondrus crispus] g...   129   1e-43
ref|XP_005710287.1| unnamed protein product [Chondrus crispus] g...   129   1e-43
ref|XP_005711125.1| unnamed protein product, partial [Chondrus c...   129   2e-43
ref|XP_005717319.1| RNA-dependent DNA polymerase [Chondrus crisp...   127   6e-43
ref|XP_005718254.1| unnamed protein product [Chondrus crispus] g...   117   1e-37
ref|XP_005717578.1| unnamed protein product [Chondrus crispus] g...   112   1e-37
ref|XP_005712033.1| unnamed protein product [Chondrus crispus] g...   113   2e-37
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     115   2e-37
ref|XP_005718253.1| unnamed protein product [Chondrus crispus] g...   116   3e-37
gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsi...   114   6e-37
gb|EOY09394.1| Uncharacterized protein TCM_024822 [Theobroma cacao]   124   8e-37
gb|ADJ18449.1| gag/pol protein [Bryonia dioica]                       134   1e-36
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   127   1e-36
gb|AFB73912.1| polyprotein [Citrus sinensis]                          122   1e-36
emb|CAN77602.1| hypothetical protein VITISV_024474 [Vitis vinifera]   114   2e-36
ref|XP_005709958.1| unnamed protein product [Chondrus crispus] g...   105   2e-36
ref|XP_005710186.1| unnamed protein product [Chondrus crispus] g...   111   3e-36
ref|XP_002461816.1| hypothetical protein SORBIDRAFT_02g008720 [S...   123   5e-36

>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1499

 Score =  139 bits (351), Expect(2) = 3e-47
 Identities = 69/151 (45%), Positives = 95/151 (62%)
 Frame = +1

Query: 25  RPLELIHCYICGSMEIMTKKKQKYLLLFIDDYSRMNRVYLLQRKDQFFNIFKNFRKQIQN 204
           + LELIH  +CG M+  +    +Y L FIDD+SRM  VY L+ K +    FK F+  ++N
Sbjct: 514 KTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVYFLKNKSEVITKFKIFKPYVEN 573

Query: 205 SSN*KLCTLRTDDGCELTSNEMMEFYKAKGITRELTTPYNPQQNGIAERWNRTLVEMMRT 384
            S  ++  LRTD G E  S E ++  +  GI  E+TTPY+PQQNG+AER NRTLVEM R+
Sbjct: 574 QSESRIKRLRTDGGGEFLSREFIKLCQESGIHHEITTPYSPQQNGVAERRNRTLVEMARS 633

Query: 385 MLNHAKLTKGWWGYACVTAAYLLNYWPNKSI 477
           M+   KL+  +W  A  T+ YL N  P+KS+
Sbjct: 634 MIEEKKLSNKFWAEAIATSTYLQNRLPSKSL 664



 Score = 76.3 bits (186), Expect(2) = 3e-47
 Identities = 34/76 (44%), Positives = 51/76 (67%)
 Frame = +2

Query: 488 SPMEVFWKKNPSINHLQIFGCKCLYHIPKELRKKLDQKCEEGMFIGYPPNTKGDLIWDPK 667
           +PME++  K PS++HL++FGC C  HIP E R+KLD K ++G+F+GY   +KG  ++   
Sbjct: 669 TPMEIWSGKKPSVDHLKVFGCVCYIHIPDEKRRKLDTKAKQGIFVGYSNESKGYRVFLLN 728

Query: 668 *SKEIVCRDVVFEETK 715
             K  V +DV F+E K
Sbjct: 729 EEKIEVSKDVTFDEKK 744


>ref|XP_005714683.1| unnamed protein product [Chondrus crispus]
           gi|507111129|emb|CDF34864.1| unnamed protein product
           [Chondrus crispus]
          Length = 779

 Score =  130 bits (326), Expect(2) = 4e-44
 Identities = 65/158 (41%), Positives = 95/158 (60%)
 Frame = +1

Query: 4   QASRRALRPLELIHCYICGSMEIMTKKKQKYLLLFIDDYSRMNRVYLLQRKDQFFNIFKN 183
           ++SRRA   L+L+H  +CG +E+ +    KY + FIDD+S  + VY +  K + F  +K 
Sbjct: 469 RSSRRAYFCLDLVHSDVCGPLEVQSNGGAKYFITFIDDHSNWSVVYPMHHKSEAFERYKM 528

Query: 184 FRKQIQNSSN*KLCTLRTDDGCELTSNEMMEFYKAKGITRELTTPYNPQQNGIAERWNRT 363
           F +  Q  +  K+  LRTD G E  S E   F  A G   ++TT Y P+QNG+AER NRT
Sbjct: 529 FAQLAQTHTGRKIKVLRTDRGGEYLSTEFKSFLIANGTQHQMTTAYTPEQNGVAERLNRT 588

Query: 364 LVEMMRTMLNHAKLTKGWWGYACVTAAYLLNYWPNKSI 477
           LV ++R+ML H K+TKG+W  A   A Y+ N   +++I
Sbjct: 589 LVNLVRSMLAHKKVTKGFWAEALANAVYVRNRVTSRAI 626



 Score = 75.1 bits (183), Expect(2) = 4e-44
 Identities = 35/83 (42%), Positives = 50/83 (60%)
 Frame = +2

Query: 488 SPMEVFWKKNPSINHLQIFGCKCLYHIPKELRKKLDQKCEEGMFIGYPPNTKGDLIWDPK 667
           +P  ++ K  P++ HL++FG KC Y +PK   +KLD + +E MF+GY  NTK   +WD  
Sbjct: 631 TPYHLWMKSVPNVGHLRVFGSKCWYTLPKHNIQKLDARAKEAMFLGYAENTKAYKLWDGD 690

Query: 668 *SKEIVCRDVVFEETKFLTDETN 736
             K IV RDV F+E+     E N
Sbjct: 691 LHKVIVSRDVTFDESTGGKSENN 713


>ref|XP_005715938.1| unnamed protein product [Chondrus crispus]
           gi|507112437|emb|CDF36119.1| unnamed protein product
           [Chondrus crispus]
          Length = 753

 Score =  129 bits (325), Expect(2) = 1e-43
 Identities = 65/158 (41%), Positives = 95/158 (60%)
 Frame = +1

Query: 4   QASRRALRPLELIHCYICGSMEIMTKKKQKYLLLFIDDYSRMNRVYLLQRKDQFFNIFKN 183
           ++SRRA   L+L+H  +CG +E+ +    KY + FIDD+S  + VY +  K + F  +K 
Sbjct: 466 RSSRRAYFCLDLVHSDVCGPLEVQSIGGAKYFITFIDDHSNWSVVYPMHHKSEAFERYKT 525

Query: 184 FRKQIQNSSN*KLCTLRTDDGCELTSNEMMEFYKAKGITRELTTPYNPQQNGIAERWNRT 363
           F +  Q  +  K+  LRTD G E  S E   F  A G   ++TT Y P+QNG+AER NRT
Sbjct: 526 FAQLAQTHTGRKIKVLRTDRGGEYLSTEFKSFLIANGTQHQMTTAYTPEQNGVAERLNRT 585

Query: 364 LVEMMRTMLNHAKLTKGWWGYACVTAAYLLNYWPNKSI 477
           LV ++R+ML H K+TKG+W  A   A Y+ N   +++I
Sbjct: 586 LVNLVRSMLAHKKVTKGFWAEALANAVYVRNRVTSRAI 623



 Score = 74.3 bits (181), Expect(2) = 1e-43
 Identities = 33/75 (44%), Positives = 48/75 (64%)
 Frame = +2

Query: 488 SPMEVFWKKNPSINHLQIFGCKCLYHIPKELRKKLDQKCEEGMFIGYPPNTKGDLIWDPK 667
           +P  ++ K  P++ HL++FG KC Y +PK   +KLD + +E MF+GY  NTK   +WD  
Sbjct: 628 TPYHLWMKSVPNVGHLRVFGSKCWYTLPKHNIQKLDARAKEAMFLGYAENTKAYKLWDGD 687

Query: 668 *SKEIVCRDVVFEET 712
             K IV RDV F+E+
Sbjct: 688 LHKVIVSRDVTFDES 702


>ref|XP_005710287.1| unnamed protein product [Chondrus crispus]
           gi|507106340|emb|CDF39993.1| unnamed protein product
           [Chondrus crispus]
          Length = 678

 Score =  129 bits (325), Expect(2) = 1e-43
 Identities = 65/158 (41%), Positives = 95/158 (60%)
 Frame = +1

Query: 4   QASRRALRPLELIHCYICGSMEIMTKKKQKYLLLFIDDYSRMNRVYLLQRKDQFFNIFKN 183
           ++SRRA   L+L+H  +CG +E+ +    KY + FIDD+S  + VY +  K + F  +K 
Sbjct: 395 RSSRRAYFSLDLVHSDVCGPLEVQSIGGAKYFITFIDDHSNWSVVYPMHHKSEAFERYKM 454

Query: 184 FRKQIQNSSN*KLCTLRTDDGCELTSNEMMEFYKAKGITRELTTPYNPQQNGIAERWNRT 363
           F +  Q  +  K+  LRTD G E  S E   F  A G   ++TT Y P+QNG+AER NRT
Sbjct: 455 FAQLAQTHTGRKIKVLRTDRGGEYLSTEFKSFLIANGTQHQMTTAYTPEQNGVAERLNRT 514

Query: 364 LVEMMRTMLNHAKLTKGWWGYACVTAAYLLNYWPNKSI 477
           LV ++R+ML H K+TKG+W  A   A Y+ N   +++I
Sbjct: 515 LVNLVRSMLAHKKVTKGFWAEALANAVYVRNRVTSRAI 552



 Score = 74.3 bits (181), Expect(2) = 1e-43
 Identities = 33/75 (44%), Positives = 48/75 (64%)
 Frame = +2

Query: 488 SPMEVFWKKNPSINHLQIFGCKCLYHIPKELRKKLDQKCEEGMFIGYPPNTKGDLIWDPK 667
           +P  ++ K  P++ HL++FG KC Y +PK   +KLD + +E MF+GY  NTK   +WD  
Sbjct: 557 TPYHLWMKSVPNVGHLRVFGSKCWYTLPKHNIQKLDARAKEAMFLGYAENTKAYKLWDGD 616

Query: 668 *SKEIVCRDVVFEET 712
             K IV RDV F+E+
Sbjct: 617 LHKVIVSRDVTFDES 631


>ref|XP_005711125.1| unnamed protein product, partial [Chondrus crispus]
           gi|507107329|emb|CDF40831.1| unnamed protein product,
           partial [Chondrus crispus]
          Length = 661

 Score =  129 bits (323), Expect(2) = 2e-43
 Identities = 65/158 (41%), Positives = 95/158 (60%)
 Frame = +1

Query: 4   QASRRALRPLELIHCYICGSMEIMTKKKQKYLLLFIDDYSRMNRVYLLQRKDQFFNIFKN 183
           ++SRRA   L+L+H  +CG +E+ +    KY + FIDD+S  + VY +  K + F  +K 
Sbjct: 360 RSSRRAYFCLDLVHSDVCGPLEVQSIGGAKYFITFIDDHSNWSVVYPIHHKSEAFERYKM 419

Query: 184 FRKQIQNSSN*KLCTLRTDDGCELTSNEMMEFYKAKGITRELTTPYNPQQNGIAERWNRT 363
           F +  Q  +  K+  LRTD G E  S E   F  A G   ++TT Y P+QNG+AER NRT
Sbjct: 420 FAQLAQTHTGRKIKVLRTDRGGEYLSTEFKSFLIANGTQHQMTTAYTPEQNGVAERLNRT 479

Query: 364 LVEMMRTMLNHAKLTKGWWGYACVTAAYLLNYWPNKSI 477
           LV ++R+ML H K+TKG+W  A   A Y+ N   +++I
Sbjct: 480 LVNLVRSMLAHKKVTKGFWAEALANAVYVRNRVTSRAI 517



 Score = 74.3 bits (181), Expect(2) = 2e-43
 Identities = 33/75 (44%), Positives = 48/75 (64%)
 Frame = +2

Query: 488 SPMEVFWKKNPSINHLQIFGCKCLYHIPKELRKKLDQKCEEGMFIGYPPNTKGDLIWDPK 667
           +P  ++ K  P++ HL++FG KC Y +PK   +KLD + +E MF+GY  NTK   +WD  
Sbjct: 522 TPYHLWMKSVPNVGHLRVFGSKCWYTLPKHNIQKLDARAKEAMFLGYAENTKAYKLWDGD 581

Query: 668 *SKEIVCRDVVFEET 712
             K IV RDV F+E+
Sbjct: 582 LHKVIVSRDVTFDES 596


>ref|XP_005717319.1| RNA-dependent DNA polymerase [Chondrus crispus]
           gi|515797405|emb|CDF77535.1| RNA-dependent DNA
           polymerase [Chondrus crispus]
          Length = 1372

 Score =  127 bits (318), Expect(2) = 6e-43
 Identities = 64/158 (40%), Positives = 94/158 (59%)
 Frame = +1

Query: 4   QASRRALRPLELIHCYICGSMEIMTKKKQKYLLLFIDDYSRMNRVYLLQRKDQFFNIFKN 183
           ++SRR    L+L+H  +CG +E+ +    KY + FIDD+S  + VY +  K + F  +K 
Sbjct: 490 RSSRRPYFCLDLVHSDVCGPLEVQSIGGAKYFITFIDDHSNWSVVYPMHHKSEAFERYKM 549

Query: 184 FRKQIQNSSN*KLCTLRTDDGCELTSNEMMEFYKAKGITRELTTPYNPQQNGIAERWNRT 363
           F +  Q  +  K+  LRTD G E  S E   F  A G   ++TT Y P+QNG+AER NRT
Sbjct: 550 FAQLAQTHTGRKIKVLRTDRGGEYLSTEFKSFLIANGTQHQMTTAYTPEQNGVAERLNRT 609

Query: 364 LVEMMRTMLNHAKLTKGWWGYACVTAAYLLNYWPNKSI 477
           LV ++R+ML H K+TKG+W  A   A Y+ N   +++I
Sbjct: 610 LVNLVRSMLAHKKVTKGFWAEALANAVYVRNRVTSRAI 647



 Score = 74.3 bits (181), Expect(2) = 6e-43
 Identities = 33/75 (44%), Positives = 48/75 (64%)
 Frame = +2

Query: 488 SPMEVFWKKNPSINHLQIFGCKCLYHIPKELRKKLDQKCEEGMFIGYPPNTKGDLIWDPK 667
           +P  ++ K  P++ HL++FG KC Y +PK   +KLD + +E MF+GY  NTK   +WD  
Sbjct: 652 TPYHLWMKSVPNVGHLRVFGSKCWYTLPKHNIQKLDARAKEAMFLGYAENTKAYKLWDGD 711

Query: 668 *SKEIVCRDVVFEET 712
             K IV RDV F+E+
Sbjct: 712 LHKVIVSRDVTFDES 726


>ref|XP_005718254.1| unnamed protein product [Chondrus crispus]
           gi|507114848|emb|CDF38369.1| unnamed protein product
           [Chondrus crispus]
          Length = 836

 Score =  117 bits (293), Expect(2) = 1e-37
 Identities = 56/151 (37%), Positives = 90/151 (59%)
 Frame = +1

Query: 4   QASRRALRPLELIHCYICGSMEIMTKKKQKYLLLFIDDYSRMNRVYLLQRKDQFFNIFKN 183
           ++S RA   L+L+H  +CG +E+ +    +Y + F+DD+S    VY ++ K + F  +K 
Sbjct: 455 RSSSRAQNCLDLVHSDVCGPLEVQSIGGSRYFITFVDDHSNWVVVYTMRNKSEAFAKYKL 514

Query: 184 FRKQIQNSSN*KLCTLRTDDGCELTSNEMMEFYKAKGITRELTTPYNPQQNGIAERWNRT 363
           + K  Q  +  K+  LRTD G E  S E        G   +LTT Y P+QNG+AER NRT
Sbjct: 515 YEKLAQTHTGRKVKVLRTDRGGEYLSTEFKSHLDLNGTQHQLTTAYTPEQNGVAERLNRT 574

Query: 364 LVEMMRTMLNHAKLTKGWWGYACVTAAYLLN 456
           L++++R+ML+H +++K +W  A  T+ Y+ N
Sbjct: 575 LIDLVRSMLSHKQVSKRFWAEALATSVYVRN 605



 Score = 66.2 bits (160), Expect(2) = 1e-37
 Identities = 29/74 (39%), Positives = 46/74 (62%)
 Frame = +2

Query: 488 SPMEVFWKKNPSINHLQIFGCKCLYHIPKELRKKLDQKCEEGMFIGYPPNTKGDLIWDPK 667
           +P  ++    P++ HL++FG KC Y +PK   +KLD +  E MF+GY   +K   +WD +
Sbjct: 617 TPHHIWMNCTPNVGHLRVFGSKCWYTLPKLELRKLDLRAREAMFLGYSQCSKAYKLWDGE 676

Query: 668 *SKEIVCRDVVFEE 709
            +K +V RDV F+E
Sbjct: 677 LNKIVVSRDVKFDE 690


>ref|XP_005717578.1| unnamed protein product [Chondrus crispus]
           gi|507114128|emb|CDF37707.1| unnamed protein product
           [Chondrus crispus]
          Length = 719

 Score =  112 bits (281), Expect(2) = 1e-37
 Identities = 54/151 (35%), Positives = 89/151 (58%)
 Frame = +1

Query: 4   QASRRALRPLELIHCYICGSMEIMTKKKQKYLLLFIDDYSRMNRVYLLQRKDQFFNIFKN 183
           ++S RA   L+L+H  +CG +E+ +    +Y + F+DD+S    VY ++ K + F  +K 
Sbjct: 450 RSSSRAQNCLDLVHSDVCGPLEVQSIGGLRYFITFVDDHSNWVVVYTMRNKSEAFAKYKL 509

Query: 184 FRKQIQNSSN*KLCTLRTDDGCELTSNEMMEFYKAKGITRELTTPYNPQQNGIAERWNRT 363
           + K  Q  +  K+  LRTD G E  S E         +  +LTT Y P+QNG+AER NRT
Sbjct: 510 YEKLAQTHTGRKVKVLRTDRGGEYLSTEFKSHLDLNSMQHQLTTAYTPEQNGVAERLNRT 569

Query: 364 LVEMMRTMLNHAKLTKGWWGYACVTAAYLLN 456
           L++++R+ L+H +++K +W  A  T+ Y+ N
Sbjct: 570 LIDLVRSRLSHKQVSKRFWAEALATSVYVRN 600



 Score = 70.9 bits (172), Expect(2) = 1e-37
 Identities = 30/75 (40%), Positives = 48/75 (64%)
 Frame = +2

Query: 488 SPMEVFWKKNPSINHLQIFGCKCLYHIPKELRKKLDQKCEEGMFIGYPPNTKGDLIWDPK 667
           +P  ++    P++ HL++FG KC Y +PK   +KLD +  E MF+GYP  +K   +WD +
Sbjct: 612 TPHHIWMNSTPNVGHLRVFGSKCWYTLPKLELRKLDLRAREAMFLGYPQCSKAYKLWDGE 671

Query: 668 *SKEIVCRDVVFEET 712
            +K +V RDV F+E+
Sbjct: 672 LNKIVVSRDVKFDES 686


>ref|XP_005712033.1| unnamed protein product [Chondrus crispus]
           gi|507108397|emb|CDF32368.1| unnamed protein product
           [Chondrus crispus]
          Length = 707

 Score =  113 bits (283), Expect(2) = 2e-37
 Identities = 54/151 (35%), Positives = 89/151 (58%)
 Frame = +1

Query: 4   QASRRALRPLELIHCYICGSMEIMTKKKQKYLLLFIDDYSRMNRVYLLQRKDQFFNIFKN 183
           ++S RA   L+L+H  +CG +E+ +    +Y + F+DD+S    VY ++ K + F  +K 
Sbjct: 438 RSSSRAQNCLDLVHSDVCGPLEVQSIGGSRYFITFVDDHSNWVVVYTMRNKSEAFAKYKL 497

Query: 184 FRKQIQNSSN*KLCTLRTDDGCELTSNEMMEFYKAKGITRELTTPYNPQQNGIAERWNRT 363
           + K  Q  +  K+  LRTD G E  S E         +  +LTT Y P+QNG+AER NRT
Sbjct: 498 YEKLAQTHTGRKVKVLRTDRGGEYLSTEFKSHLDLNSMQHQLTTAYTPEQNGVAERLNRT 557

Query: 364 LVEMMRTMLNHAKLTKGWWGYACVTAAYLLN 456
           L++++R+ L+H +++K +W  A  T+ Y+ N
Sbjct: 558 LIDLVRSRLSHKQVSKRFWAEALATSVYVRN 588



 Score = 69.7 bits (169), Expect(2) = 2e-37
 Identities = 29/75 (38%), Positives = 48/75 (64%)
 Frame = +2

Query: 488 SPMEVFWKKNPSINHLQIFGCKCLYHIPKELRKKLDQKCEEGMFIGYPPNTKGDLIWDPK 667
           +P  ++    P++ HL++FG KC Y +P+   +KLD +  E MF+GYP  +K   +WD +
Sbjct: 600 TPHHIWMNSTPNVGHLRVFGSKCWYTLPRLELRKLDLRAREAMFLGYPQCSKAYKLWDGE 659

Query: 668 *SKEIVCRDVVFEET 712
            +K +V RDV F+E+
Sbjct: 660 LNKIVVSRDVKFDES 674


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  115 bits (288), Expect(2) = 2e-37
 Identities = 57/152 (37%), Positives = 93/152 (61%)
 Frame = +1

Query: 31  LELIHCYICGSMEIMTKKKQKYLLLFIDDYSRMNRVYLLQRKDQFFNIFKNFRKQIQNSS 210
           L+ IH  + G    ++K   +Y + FIDD+SR   ++ ++ K++ F  FK ++ ++ N +
Sbjct: 453 LDYIHTDVWGPSATISKGGARYFVSFIDDFSRKVWIFFMKTKNEVFTKFKEWKAEVGNQT 512

Query: 211 N*KLCTLRTDDGCELTSNEMMEFYKAKGITRELTTPYNPQQNGIAERWNRTLVEMMRTML 390
             K+  LR+D+G E    + ++  K +GITR  T   +PQQNG+AER NRTL+E  R+M 
Sbjct: 513 GRKIKCLRSDNGGEYRDKKFLQLCKDEGITRHFTVKKSPQQNGVAERMNRTLMEKERSMR 572

Query: 391 NHAKLTKGWWGYACVTAAYLLNYWPNKSINYK 486
            HA L + +W  A   A YL+N  P+++IN+K
Sbjct: 573 FHAGLPEEFWAEAANHACYLINRSPSRAINFK 604



 Score = 67.4 bits (163), Expect(2) = 2e-37
 Identities = 33/87 (37%), Positives = 52/87 (59%)
 Frame = +2

Query: 464 PIKALIIKSPMEVFWKKNPSINHLQIFGCKCLYHIPKELRKKLDQKCEEGMFIGYPPNTK 643
           P +A+  K   EV+  K    ++L++FGC    HIPK+ R KL+ K  E +FIG+    K
Sbjct: 597 PSRAINFKCAEEVWSGKPVDYSNLRVFGCSAYAHIPKDERTKLEPKSLECLFIGFEKGVK 656

Query: 644 GDLIWDPK*SKEIVCRDVVFEETKFLT 724
           G  +WD    K+++ RDVVF+E + ++
Sbjct: 657 GYKLWDIVNEKKVISRDVVFDEREAIS 683


>ref|XP_005718253.1| unnamed protein product [Chondrus crispus]
           gi|507114847|emb|CDF38368.1| unnamed protein product
           [Chondrus crispus]
          Length = 827

 Score =  116 bits (290), Expect(2) = 3e-37
 Identities = 55/151 (36%), Positives = 90/151 (59%)
 Frame = +1

Query: 4   QASRRALRPLELIHCYICGSMEIMTKKKQKYLLLFIDDYSRMNRVYLLQRKDQFFNIFKN 183
           ++S R+   L+L+H  +CG +E+ +    +Y + F+DD+S    VY ++ K + F  +K 
Sbjct: 455 RSSSRSQNCLDLVHSDVCGPLEVQSIGGSRYFITFVDDHSNWVVVYTMRNKSEAFAKYKL 514

Query: 184 FRKQIQNSSN*KLCTLRTDDGCELTSNEMMEFYKAKGITRELTTPYNPQQNGIAERWNRT 363
           + K  Q  +  K+  LRTD G E  S E        G   +LTT Y P+QNG+AER NRT
Sbjct: 515 YEKLAQTHTGRKVKVLRTDRGGEYLSTEFKSHLDLNGTQHQLTTAYTPEQNGVAERLNRT 574

Query: 364 LVEMMRTMLNHAKLTKGWWGYACVTAAYLLN 456
           L++++R+ML+H +++K +W  A  T+ Y+ N
Sbjct: 575 LIDLVRSMLSHKQVSKRFWAEALATSVYVRN 605



 Score = 66.2 bits (160), Expect(2) = 3e-37
 Identities = 28/75 (37%), Positives = 47/75 (62%)
 Frame = +2

Query: 488 SPMEVFWKKNPSINHLQIFGCKCLYHIPKELRKKLDQKCEEGMFIGYPPNTKGDLIWDPK 667
           +P  ++    P++ HL++FG KC Y +PK   +KLD +  E +F+GY   +K   +WD +
Sbjct: 617 TPHHIWMNSTPNVGHLRVFGSKCWYTLPKLELRKLDLRAREAIFLGYSQCSKAYKLWDGE 676

Query: 668 *SKEIVCRDVVFEET 712
            +K +V RDV F+E+
Sbjct: 677 LNKIVVSRDVKFDES 691


>gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1347

 Score =  114 bits (285), Expect(2) = 6e-37
 Identities = 62/158 (39%), Positives = 91/158 (57%)
 Frame = +1

Query: 4   QASRRALRPLELIHCYICGSMEIMTKKKQKYLLLFIDDYSRMNRVYLLQRKDQFFNIFKN 183
           ++  +    LE++H  +CG M+  +    +Y +LF+DDY+ M  VY L++K + F  FK 
Sbjct: 506 ESQTKTREKLEIVHTDVCGPMQHQSIDGSRYYVLFLDDYTHMCWVYFLKQKSETFATFKK 565

Query: 184 FRKQIQNSSN*KLCTLRTDDGCELTSNEMMEFYKAKGITRELTTPYNPQQNGIAERWNRT 363
           F+  ++  SN  + TLR           M  F + +GI R++T PY+PQQNG AER NR+
Sbjct: 566 FKALVEKQSNCSIKTLRP----------MEVFCEDEGINRQVTLPYSPQQNGAAERKNRS 615

Query: 364 LVEMMRTMLNHAKLTKGWWGYACVTAAYLLNYWPNKSI 477
           LVEM R+ML    L    W  A  T+AYL N  P+K+I
Sbjct: 616 LVEMARSMLVEQDLPLKLWAEAVYTSAYLQNRLPSKAI 653



 Score = 67.0 bits (162), Expect(2) = 6e-37
 Identities = 34/76 (44%), Positives = 48/76 (63%)
 Frame = +2

Query: 488 SPMEVFWKKNPSINHLQIFGCKCLYHIPKELRKKLDQKCEEGMFIGYPPNTKGDLIWDPK 667
           +PME +    P+++HL+IFG  C  HIP + R+KLD K + G+ IGY   TKG  ++  +
Sbjct: 658 TPMEKWCGHKPNVSHLRIFGSICYVHIPDQKRRKLDAKAKCGILIGYSNQTKGYRVFLLE 717

Query: 668 *SKEIVCRDVVFEETK 715
             K  V RDVVF+E K
Sbjct: 718 DEKVEVSRDVVFQEDK 733


>gb|EOY09394.1| Uncharacterized protein TCM_024822 [Theobroma cacao]
          Length = 431

 Score =  124 bits (310), Expect(2) = 8e-37
 Identities = 67/156 (42%), Positives = 94/156 (60%)
 Frame = +1

Query: 10  SRRALRPLELIHCYICGSMEIMTKKKQKYLLLFIDDYSRMNRVYLLQRKDQFFNIFKNFR 189
           S RA   LEL+H  +CG M+  +    KY LLFIDDYS+   V+ L+ K + F+ FK F+
Sbjct: 146 SWRASNCLELVHVDLCGPMDTESFGGSKYFLLFIDDYSQKIWVFFLKFKFETFDNFKKFK 205

Query: 190 KQIQNSSN*KLCTLRTDDGCELTSNEMMEFYKAKGITRELTTPYNPQQNGIAERWNRTLV 369
            +++N S   +  L TD G E  SNE   F + +GI REL+ PY P+QNG A+R NRT+V
Sbjct: 206 TEVENQSGCNINVLSTDRGGEFVSNEFNNFCEEQGIRRELSAPYTPKQNGAAKRKNRTIV 265

Query: 370 EMMRTMLNHAKLTKGWWGYACVTAAYLLNYWPNKSI 477
           EM  ++L    L   +   A  T AYLLN +P +++
Sbjct: 266 EMATSLLVAKGLPNQFRAEAVATTAYLLNVFPTRAV 301



 Score = 57.0 bits (136), Expect(2) = 8e-37
 Identities = 26/82 (31%), Positives = 49/82 (59%)
 Frame = +2

Query: 464 PIKALIIKSPMEVFWKKNPSINHLQIFGCKCLYHIPKELRKKLDQKCEEGMFIGYPPNTK 643
           P +A++  +P E +    P +++L++FGC     +  + + KLD+K E+ +F+GY   +K
Sbjct: 297 PTRAVLNCTPYEAWRGMRPWVSYLRVFGCIAYALVKSQTQHKLDEKSEKCIFLGYSSQSK 356

Query: 644 GDLIWDPK*SKEIVCRDVVFEE 709
              +++ K  K I+ RDV+F E
Sbjct: 357 AYRLYNSKNGKIIISRDVIFNE 378


>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
          Length = 1292

 Score =  134 bits (338), Expect(2) = 1e-36
 Identities = 63/154 (40%), Positives = 99/154 (64%)
 Frame = +1

Query: 16  RALRPLELIHCYICGSMEIMTKKKQKYLLLFIDDYSRMNRVYLLQRKDQFFNIFKNFRKQ 195
           RA  PLEL+H  +CG M +  +   +Y + FIDD+SR   VYLL  K + F  FK ++ +
Sbjct: 496 RAKVPLELVHSDLCGPMNVKARGGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAE 555

Query: 196 IQNSSN*KLCTLRTDDGCELTSNEMMEFYKAKGITRELTTPYNPQQNGIAERWNRTLVEM 375
           ++N     + TLR+D G E   ++  ++    GI  +L+ P  PQQNG++ER NRTL++M
Sbjct: 556 VENEIGKTIKTLRSDRGGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDM 615

Query: 376 MRTMLNHAKLTKGWWGYACVTAAYLLNYWPNKSI 477
           +R+M+++A+L   +WGYA  TA ++LN  P+KS+
Sbjct: 616 VRSMMSYAQLPDSFWGYALETAIHILNNVPSKSV 649



 Score = 45.8 bits (107), Expect(2) = 1e-36
 Identities = 21/77 (27%), Positives = 45/77 (58%)
 Frame = +2

Query: 479 IIKSPMEVFWKKNPSINHLQIFGCKCLYHIPKELRKKLDQKCEEGMFIGYPPNTKGDLIW 658
           ++++P E++  +  S+ + +I+GC    H+  +  KKL+ + +  +F+GYP  ++G L +
Sbjct: 649 VLETPYELWKGRKSSLRYFRIWGCPA--HVLVQNPKKLEPRSKLCLFVGYPKESRGGLFY 706

Query: 659 DPK*SKEIVCRDVVFEE 709
            P+ +K  V  +  F E
Sbjct: 707 HPQENKVFVSTNATFLE 723


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
           19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
           putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  127 bits (320), Expect(2) = 1e-36
 Identities = 65/162 (40%), Positives = 96/162 (59%)
 Frame = +1

Query: 10  SRRALRPLELIHCYICGSMEIMTKKKQKYLLLFIDDYSRMNRVYLLQRKDQFFNIFKNFR 189
           S RA   L LIH  +CG M    +   +Y + F DD+SR   VYL++ K + F  FK F+
Sbjct: 133 SERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLMKHKSKSFENFKEFQ 192

Query: 190 KQIQNSSN*KLCTLRTDDGCELTSNEMMEFYKAKGITRELTTPYNPQQNGIAERWNRTLV 369
            ++QN     +  LR+D G E  S    +  +  GI  +LT P  PQ NG++ER NRTL+
Sbjct: 193 NEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQWNGVSERRNRTLL 252

Query: 370 EMMRTMLNHAKLTKGWWGYACVTAAYLLNYWPNKSINYKKPH 495
           +M+R+M++H  L   +WGYA  T+A++LN  P+KS+  K P+
Sbjct: 253 DMVRSMMSHTDLPSPFWGYALETSAFMLNRCPSKSVE-KTPY 293



 Score = 52.8 bits (125), Expect(2) = 1e-36
 Identities = 28/84 (33%), Positives = 49/84 (58%)
 Frame = +2

Query: 485 KSPMEVFWKKNPSINHLQIFGCKCLYHIPKELRKKLDQKCEEGMFIGYPPNTKGDLIWDP 664
           K+P E++  K P+++ L+I+GC+   +  + +  KL  K ++  F+GYP  TKG   + P
Sbjct: 290 KTPYEIWTGKVPNLSFLKIWGCES--YAKRLITDKLGPKSDKCYFVGYPKETKGYYFYHP 347

Query: 665 K*SKEIVCRDVVFEETKFLTDETN 736
             +K  V R+  F E +FL+  T+
Sbjct: 348 TDNKVFVVRNGAFLEREFLSKGTS 371


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  122 bits (306), Expect(2) = 1e-36
 Identities = 65/152 (42%), Positives = 92/152 (60%)
 Frame = +1

Query: 31  LELIHCYICGSMEIMTKKKQKYLLLFIDDYSRMNRVYLLQRKDQFFNIFKNFRKQIQNSS 210
           L+LIH  +  S +I +    KY++ FIDDYSR   VY +++K   F +FK ++  ++  S
Sbjct: 482 LDLIHSDVWESPDI-SMGGAKYMVTFIDDYSRRCWVYPIKKKSDVFPVFKEYKAWVELES 540

Query: 211 N*KLCTLRTDDGCELTSNEMMEFYKAKGITRELTTPYNPQQNGIAERWNRTLVEMMRTML 390
             K+  LRTD+G E T +E + F K +GI R+ T  Y PQQNG+AER NRTL E +R ML
Sbjct: 541 GKKIKCLRTDNGGEYTDSEFLAFCKQEGIQRQFTVAYTPQQNGVAERMNRTLTERIRAML 600

Query: 391 NHAKLTKGWWGYACVTAAYLLNYWPNKSINYK 486
             A L   +W  A  TA Y++N  P+ +I  K
Sbjct: 601 RTAGLPNSFWAEAAKTACYIVNRSPSTAIGLK 632



 Score = 57.8 bits (138), Expect(2) = 1e-36
 Identities = 29/82 (35%), Positives = 44/82 (53%)
 Frame = +2

Query: 464 PIKALIIKSPMEVFWKKNPSINHLQIFGCKCLYHIPKELRKKLDQKCEEGMFIGYPPNTK 643
           P  A+ +K+ ME++  K    ++L  FGC        + R KLD K  + +F+GY    K
Sbjct: 625 PSTAIGLKTAMEMWTGKPADYSYLHAFGCPVYVMYNAQERTKLDPKSRKCIFLGYADGVK 684

Query: 644 GDLIWDPK*SKEIVCRDVVFEE 709
           G  +WDP   K ++ RDV+F E
Sbjct: 685 GYRLWDPTAHKIVISRDVIFVE 706


>emb|CAN77602.1| hypothetical protein VITISV_024474 [Vitis vinifera]
          Length = 1207

 Score =  114 bits (285), Expect(2) = 2e-36
 Identities = 60/154 (38%), Positives = 91/154 (59%)
 Frame = +1

Query: 31  LELIHCYICGSMEIMTKKKQKYLLLFIDDYSRMNRVYLLQRKDQFFNIFKNFRKQIQNSS 210
           L+L++  +CG M+  T     Y + FIDD+SR   VY L+ KDQ  ++FK F   ++  S
Sbjct: 362 LDLVYSDVCGPMKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQFHALVERQS 421

Query: 211 N*KLCTLRTDDGCELTSNEMMEFYKAKGITRELTTPYNPQQNGIAERWNRTLVEMMRTML 390
             KL  +RTD+G E +S    E+ +  GI  + T+P  PQ NG+AER NRTLVE +R +L
Sbjct: 422 GEKLKCIRTDNGGEYSS-PFDEYCRQHGIRHQKTSPKTPQLNGLAERMNRTLVERVRCLL 480

Query: 391 NHAKLTKGWWGYACVTAAYLLNYWPNKSINYKKP 492
           + ++L + +WG A  T  ++LN  P   + +  P
Sbjct: 481 SQSQLPRSFWGEALNTVVHVLNLTPCVPLEFDVP 514



 Score = 65.1 bits (157), Expect(2) = 2e-36
 Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
 Frame = +2

Query: 506 WKKNP-SINHLQIFGCKCLYHIPKELRKKLDQKCEEGMFIGYPPNTKGDLIWDPK*SKEI 682
           W KN  S +HL++FGCK   HIPK+ R KLD K    +FIGY  +  G   +DP   K +
Sbjct: 518 WSKNEISYDHLRVFGCKAFVHIPKDERSKLDAKTRPCVFIGYGQDELGYRFYDPVQKKLV 577

Query: 683 VCRDVVFEETKFLTD 727
             RDVVF E   + D
Sbjct: 578 RSRDVVFMEDHTIQD 592


>ref|XP_005709958.1| unnamed protein product [Chondrus crispus]
           gi|507105973|emb|CDF39664.1| unnamed protein product
           [Chondrus crispus]
          Length = 728

 Score =  105 bits (261), Expect(2) = 2e-36
 Identities = 58/158 (36%), Positives = 85/158 (53%)
 Frame = +1

Query: 4   QASRRALRPLELIHCYICGSMEIMTKKKQKYLLLFIDDYSRMNRVYLLQRKDQFFNIFKN 183
           ++SRRA   L+L+H  +CG +E+ +    KY + FIDD+S  +                 
Sbjct: 425 RSSRRAYFCLDLVHSDVCGPLEVQSIGGAKYFITFIDDHSNWS----------------- 467

Query: 184 FRKQIQNSSN*KLCTLRTDDGCELTSNEMMEFYKAKGITRELTTPYNPQQNGIAERWNRT 363
                   ++ K+  LRTD G E  S E   F  A G   ++TT Y P+QNG+AER NRT
Sbjct: 468 ------THTDRKIKVLRTDRGGEYLSTEFKSFLIANGTQHQMTTAYTPEQNGVAERLNRT 521

Query: 364 LVEMMRTMLNHAKLTKGWWGYACVTAAYLLNYWPNKSI 477
           LV ++R+ML H K+TKG+W  A   A Y+ N   +++I
Sbjct: 522 LVNLVRSMLAHKKVTKGFWAEALANAVYVRNRVTSRAI 559



 Score = 74.3 bits (181), Expect(2) = 2e-36
 Identities = 33/75 (44%), Positives = 48/75 (64%)
 Frame = +2

Query: 488 SPMEVFWKKNPSINHLQIFGCKCLYHIPKELRKKLDQKCEEGMFIGYPPNTKGDLIWDPK 667
           +P  ++ K  P++ HL++FG KC Y +PK   +KLD + +E MF+GY  NTK   +WD  
Sbjct: 564 TPYHLWMKSVPNVGHLRVFGSKCWYTLPKHNIQKLDARAKEAMFLGYAENTKAYKLWDGD 623

Query: 668 *SKEIVCRDVVFEET 712
             K IV RDV F+E+
Sbjct: 624 LHKVIVSRDVTFDES 638


>ref|XP_005710186.1| unnamed protein product [Chondrus crispus]
           gi|507106225|emb|CDF39892.1| unnamed protein product
           [Chondrus crispus]
          Length = 1194

 Score =  111 bits (277), Expect(2) = 3e-36
 Identities = 54/151 (35%), Positives = 88/151 (58%)
 Frame = +1

Query: 4   QASRRALRPLELIHCYICGSMEIMTKKKQKYLLLFIDDYSRMNRVYLLQRKDQFFNIFKN 183
           ++S RA   L+L+H  +CG +E+ +    +  + F+DD+S    VY ++ K + F  +K 
Sbjct: 428 RSSSRAQNCLDLVHSDVCGPLEVQSIGGSRCFITFVDDHSNWVVVYTMRYKSEAFAKYKL 487

Query: 184 FRKQIQNSSN*KLCTLRTDDGCELTSNEMMEFYKAKGITRELTTPYNPQQNGIAERWNRT 363
           + K  Q  +  K+  LRTD G E  S E        G   +LTT Y P+QNG+AER NRT
Sbjct: 488 YEKLAQTHTGRKVKVLRTDRGGEYLSTEFKSHLDLNGTQHQLTTAYTPEQNGVAERLNRT 547

Query: 364 LVEMMRTMLNHAKLTKGWWGYACVTAAYLLN 456
           L++++ +ML+H +++K +W  A  T+ Y+ N
Sbjct: 548 LIDLVHSMLSHKQVSKRFWAEALATSVYVRN 578



 Score = 67.8 bits (164), Expect(2) = 3e-36
 Identities = 29/75 (38%), Positives = 47/75 (62%)
 Frame = +2

Query: 488 SPMEVFWKKNPSINHLQIFGCKCLYHIPKELRKKLDQKCEEGMFIGYPPNTKGDLIWDPK 667
           +P  ++    P++ HL++FG KC Y +PK   +KLD +  E MF+GY   +K   +WD +
Sbjct: 590 TPHHIWMNSTPNVGHLRVFGSKCWYTLPKLELRKLDLRAREAMFLGYSQCSKAYKLWDGE 649

Query: 668 *SKEIVCRDVVFEET 712
            +K +V RDV F+E+
Sbjct: 650 LNKIVVSRDVKFDES 664


>ref|XP_002461816.1| hypothetical protein SORBIDRAFT_02g008720 [Sorghum bicolor]
           gi|241925193|gb|EER98337.1| hypothetical protein
           SORBIDRAFT_02g008720 [Sorghum bicolor]
          Length = 859

 Score =  123 bits (309), Expect(2) = 5e-36
 Identities = 65/158 (41%), Positives = 90/158 (56%)
 Frame = +1

Query: 22  LRPLELIHCYICGSMEIMTKKKQKYLLLFIDDYSRMNRVYLLQRKDQFFNIFKNFRKQIQ 201
           + PL+L+H  ICG +   T    +Y LL +DDYSR   + LL  KD   N  KN +   +
Sbjct: 1   MEPLQLLHGDICGPITPATPSGNRYFLLLVDDYSRFMWISLLPTKDAAANAIKNIQAAAE 60

Query: 202 NSSN*KLCTLRTDDGCELTSNEMMEFYKAKGITRELTTPYNPQQNGIAERWNRTLVEMMR 381
             S  K+ TLRTD G E  + + +++    G+ R+LT PY PQQNGI ER N+T+V   R
Sbjct: 61  RKSGKKVVTLRTDRGGEFAAADFVDYCAQLGVHRQLTAPYTPQQNGIVERRNQTVVGTAR 120

Query: 382 TMLNHAKLTKGWWGYACVTAAYLLNYWPNKSINYKKPH 495
           +M+    L   +WG A  TA YLLN   +K+I  K P+
Sbjct: 121 SMMKAKALPGVFWGEAVTTAVYLLNRSSSKAIGGKTPY 158



 Score = 54.7 bits (130), Expect(2) = 5e-36
 Identities = 27/80 (33%), Positives = 44/80 (55%)
 Frame = +2

Query: 470 KALIIKSPMEVFWKKNPSINHLQIFGCKCLYHIPKELRKKLDQKCEEGMFIGYPPNTKGD 649
           KA+  K+P +++    PS+ HL+ FGC     +     KKL+ +    +F+GY P +K  
Sbjct: 150 KAIGGKTPYQLWNGSTPSVQHLRTFGCIAHVKVNTPHLKKLEDRSRRMVFVGYEPGSKAY 209

Query: 650 LIWDPK*SKEIVCRDVVFEE 709
             +DP   +  + RDVVF+E
Sbjct: 210 RAYDPSTRRVHISRDVVFDE 229