BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00022386
         (1241 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR18382.1| unknown [Picea sitchensis]                             333   9e-89
gb|AAG51501.1|AC058785_4 unknown protein [Arabidopsis thaliana]       268   3e-69
ref|NP_176031.2| RNA pseudourine synthase 1 [Arabidopsis thalian...   268   3e-69
ref|XP_006855276.1| hypothetical protein AMTR_s00057p00025150 [A...   267   6e-69
ref|XP_002894642.1| pseudouridine synthase family protein [Arabi...   265   3e-68
ref|XP_004230301.1| PREDICTED: RNA pseudourine synthase 1-like [...   265   4e-68
gb|EXB98832.1| RNA pseudourine synthase 1 [Morus notabilis]           264   7e-68
ref|XP_006344754.1| PREDICTED: RNA pseudouridine synthase 1-like...   264   7e-68
gb|EMJ06787.1| hypothetical protein PRUPE_ppa008866mg [Prunus pe...   263   9e-68
ref|XP_006433526.1| hypothetical protein CICLE_v10001637mg [Citr...   263   1e-67
ref|NP_001067018.1| Os12g0560500 [Oryza sativa Japonica Group] g...   263   1e-67
gb|EEE53427.1| hypothetical protein OsJ_36505 [Oryza sativa Japo...   263   1e-67
ref|XP_003579309.1| PREDICTED: RNA pseudourine synthase 1-like [...   263   1e-67
ref|XP_006472187.1| PREDICTED: RNA pseudouridine synthase 1-like...   262   2e-67
gb|EXC51319.1| RNA pseudourine synthase 1 [Morus notabilis]           261   4e-67
ref|XP_006392435.1| hypothetical protein EUTSA_v10023586mg [Eutr...   260   9e-67
tpg|DAA55259.1| TPA: hypothetical protein ZEAMMB73_192305 [Zea m...   260   9e-67
gb|ACN26382.1| unknown [Zea mays]                                     260   9e-67
ref|XP_002512503.1| ribosomal pseudouridine synthase, putative [...   259   1e-66
ref|XP_006664100.1| PREDICTED: RNA pseudouridine synthase 1-like...   257   8e-66

>gb|ABR18382.1| unknown [Picea sitchensis]
          Length = 358

 Score =  333 bits (854), Expect = 9e-89
 Identities = 175/336 (52%), Positives = 218/336 (64%), Gaps = 13/336 (3%)
 Frame = +1

Query: 88   YPKPLSPPYPEHSRQVELDRAKRAEAASSAGHALSRDHFLYEDDCFVAVNKPCGVYXXXX 267
            +PKPLS P PE SRQVE DRA RAEAA  AG ALSR+ F+YED+  +AVNKP GVY    
Sbjct: 26   FPKPLSQPPPELSRQVEYDRAMRAEAAVKAGPALSRNEFIYEDEWMIAVNKPSGVYCEHV 85

Query: 268  XXXXXXXXXXXXXXXXXXXXXXX-------RLDRDTSGVMIITKQHKIAAKFVKAYTERR 426
                                          RLDRDTSGVM+ITK HKIA + VKA+T+R+
Sbjct: 86   LSSIPELLASSPSSAGAANDVNPLELHLANRLDRDTSGVMVITKLHKIAGQLVKAFTDRK 145

Query: 427  ICKTYLALCICPSPTWNHIYIESGHGRSKYGAWRTYSKNDVGKVLPGGSTVRDMSTLLNV 606
            + KTYLALCI P+P WN+IYIESGHGRSK+GAWR YS+ DVG++LPGG+ VR+M+T L V
Sbjct: 146  VRKTYLALCIGPAPKWNNIYIESGHGRSKFGAWRVYSRTDVGRILPGGTVVREMATHLKV 205

Query: 607  LSINGFPKTTTDAIHDSDTFLQSINLTATTLKNP------DKITLDGMNQVVATEQLETG 768
            L++N   +   D++  +    Q I   A  LK        D  + D + +VV TEQ    
Sbjct: 206  LAVNANHRMHRDSVDKAQNSSQGI---AFDLKEDRFATVGDNGSTDSIEKVVVTEQNSKA 262

Query: 769  LGLQPSDMSMPSDEKNDIVLLRAYPLTGRTHQIRLHCQYARLPIRGDAKYGGVLTWKDDT 948
             G     +S P+  KND VL+RA PL+GRTHQIRLHCQY  LPIRGD KY G   WK  T
Sbjct: 263  PGQDRDIVSSPNIRKNDEVLIRASPLSGRTHQIRLHCQYMGLPIRGDVKYEGPHIWKGIT 322

Query: 949  FESHALHAETVCFEHPVTGNLVKLRAPLPEWALKSF 1056
            + +HALHAE++CFEHPVT N+VK  APLP+W ++++
Sbjct: 323  YANHALHAESLCFEHPVTNNMVKFHAPLPQWVMEAY 358


>gb|AAG51501.1|AC058785_4 unknown protein [Arabidopsis thaliana]
          Length = 293

 Score =  268 bits (686), Expect = 3e-69
 Identities = 147/319 (46%), Positives = 188/319 (58%)
 Frame = +1

Query: 88   YPKPLSPPYPEHSRQVELDRAKRAEAASSAGHALSRDHFLYEDDCFVAVNKPCGVYXXXX 267
            YPKP+S P P  S+ +EL RA  A + SS  + L+RD  LYED+  +AVNKP GVY    
Sbjct: 11   YPKPISAPPPPISKDIELRRAMEASSKSSLFN-LTRDDILYEDEYLMAVNKPKGVYCEAV 69

Query: 268  XXXXXXXXXXXXXXXXXXXXXXXRLDRDTSGVMIITKQHKIAAKFVKAYTERRICKTYLA 447
                                   RLDRDTSGVMIITK HK+AAK VKA+TE +I K+Y+A
Sbjct: 70   LRSAPQIVLDSSSEYHLAN----RLDRDTSGVMIITKSHKVAAKLVKAFTEHKIRKSYIA 125

Query: 448  LCICPSPTWNHIYIESGHGRSKYGAWRTYSKNDVGKVLPGGSTVRDMSTLLNVLSINGFP 627
            LCI  SP W  + + SGHGRSK+GAWR Y+  DVG+VLPGGS VRDM T   V+S+N   
Sbjct: 126  LCIGSSPNWRRVTVSSGHGRSKHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVN--- 182

Query: 628  KTTTDAIHDSDTFLQSINLTATTLKNPDKITLDGMNQVVATEQLETGLGLQPSDMSMPSD 807
                                  ++KN +   L+ +N V+  E           ++S   D
Sbjct: 183  ----------------------SVKN-ESCELEDVNHVIVAE--------GERELSCGGD 211

Query: 808  EKNDIVLLRAYPLTGRTHQIRLHCQYARLPIRGDAKYGGVLTWKDDTFESHALHAETVCF 987
            + + +V++RA+P +GRTHQIRLHCQY  +PIRGD KY GV  W   TFE H LHAE +  
Sbjct: 212  DDDVVVVVRAFPRSGRTHQIRLHCQYLGIPIRGDVKYHGVYEWNGRTFEGHELHAECLSL 271

Query: 988  EHPVTGNLVKLRAPLPEWA 1044
            +HPVTG+ + +RAPLP WA
Sbjct: 272  DHPVTGDSIVIRAPLPYWA 290


>ref|NP_176031.2| RNA pseudourine synthase 1 [Arabidopsis thaliana]
            gi|75140931|sp|Q7XA65.1|PUS1_ARATH RecName: Full=RNA
            pseudouridine synthase 1; AltName: Full=RNA
            pseudouridylate synthase 1; AltName: Full=RNA-uridine
            isomerase 1 gi|33589806|gb|AAQ22669.1| At1g56345
            [Arabidopsis thaliana] gi|110736414|dbj|BAF00174.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|332195260|gb|AEE33381.1| RNA pseudourine synthase 1
            [Arabidopsis thaliana]
          Length = 322

 Score =  268 bits (686), Expect = 3e-69
 Identities = 147/319 (46%), Positives = 188/319 (58%)
 Frame = +1

Query: 88   YPKPLSPPYPEHSRQVELDRAKRAEAASSAGHALSRDHFLYEDDCFVAVNKPCGVYXXXX 267
            YPKP+S P P  S+ +EL RA  A + SS  + L+RD  LYED+  +AVNKP GVY    
Sbjct: 40   YPKPISAPPPPISKDIELRRAMEASSKSSLFN-LTRDDILYEDEYLMAVNKPKGVYCEAV 98

Query: 268  XXXXXXXXXXXXXXXXXXXXXXXRLDRDTSGVMIITKQHKIAAKFVKAYTERRICKTYLA 447
                                   RLDRDTSGVMIITK HK+AAK VKA+TE +I K+Y+A
Sbjct: 99   LRSAPQIVLDSSSEYHLAN----RLDRDTSGVMIITKSHKVAAKLVKAFTEHKIRKSYIA 154

Query: 448  LCICPSPTWNHIYIESGHGRSKYGAWRTYSKNDVGKVLPGGSTVRDMSTLLNVLSINGFP 627
            LCI  SP W  + + SGHGRSK+GAWR Y+  DVG+VLPGGS VRDM T   V+S+N   
Sbjct: 155  LCIGSSPNWRRVTVSSGHGRSKHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVN--- 211

Query: 628  KTTTDAIHDSDTFLQSINLTATTLKNPDKITLDGMNQVVATEQLETGLGLQPSDMSMPSD 807
                                  ++KN +   L+ +N V+  E           ++S   D
Sbjct: 212  ----------------------SVKN-ESCELEDVNHVIVAE--------GERELSCGGD 240

Query: 808  EKNDIVLLRAYPLTGRTHQIRLHCQYARLPIRGDAKYGGVLTWKDDTFESHALHAETVCF 987
            + + +V++RA+P +GRTHQIRLHCQY  +PIRGD KY GV  W   TFE H LHAE +  
Sbjct: 241  DDDVVVVVRAFPRSGRTHQIRLHCQYLGIPIRGDVKYHGVYEWNGRTFEGHELHAECLSL 300

Query: 988  EHPVTGNLVKLRAPLPEWA 1044
            +HPVTG+ + +RAPLP WA
Sbjct: 301  DHPVTGDSIVIRAPLPYWA 319


>ref|XP_006855276.1| hypothetical protein AMTR_s00057p00025150 [Amborella trichopoda]
            gi|548859042|gb|ERN16743.1| hypothetical protein
            AMTR_s00057p00025150 [Amborella trichopoda]
          Length = 326

 Score =  267 bits (683), Expect = 6e-69
 Identities = 144/332 (43%), Positives = 192/332 (57%), Gaps = 4/332 (1%)
 Frame = +1

Query: 88   YPKPLSPPYPEHSRQVELDRAKRAEAASSAGHALSRDHFLYEDDCFVAVNKPCGVYXXXX 267
            +P PL+   P  S+QVELDRA  A A S  G ++++   +YED   +A+NKP GVY    
Sbjct: 30   FPIPLTRHPPPISKQVELDRAMAASAKS--GFSITKSDVIYEDQWLIAINKPSGVYCDHV 87

Query: 268  XXXXXXXXXXXXXXXXXXXXXXX----RLDRDTSGVMIITKQHKIAAKFVKAYTERRICK 435
                                       RLDRDTSGVM+ITK HK+A K V+A+TE R+ K
Sbjct: 88   LASIPRLLGVSPESSGAENPLELHLGNRLDRDTSGVMLITKLHKVAGKLVQAFTEHRVKK 147

Query: 436  TYLALCICPSPTWNHIYIESGHGRSKYGAWRTYSKNDVGKVLPGGSTVRDMSTLLNVLSI 615
            TY+ALCI  +P W  I ++SGHGRSK+GAWR YS +D+G+ LPGGS VR+M T   VLS+
Sbjct: 148  TYIALCIGLAPQWEEIALKSGHGRSKFGAWRVYSASDIGRTLPGGSVVREMVTSFKVLSV 207

Query: 616  NGFPKTTTDAIHDSDTFLQSINLTATTLKNPDKITLDGMNQVVATEQLETGLGLQPSDMS 795
            NG               L S N+     +N   I  D  +++ +T               
Sbjct: 208  NG---------------LSSENIDFIEKRNEMLIVRDEGSKISSTH-------------- 238

Query: 796  MPSDEKNDIVLLRAYPLTGRTHQIRLHCQYARLPIRGDAKYGGVLTWKDDTFESHALHAE 975
                +  D +L+RAYP +GRTHQIRLHCQY  +P+RGD KY G   WK+ T++ HALHAE
Sbjct: 239  ----DAKDEILIRAYPQSGRTHQIRLHCQYLGIPLRGDVKYEGPHEWKEKTYDYHALHAE 294

Query: 976  TVCFEHPVTGNLVKLRAPLPEWALKSFNCTVG 1071
             + F+HPVTG+L++  APLP WA ++ +CT G
Sbjct: 295  NLSFDHPVTGSLMEFHAPLPSWAREALSCTKG 326


>ref|XP_002894642.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297340484|gb|EFH70901.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 321

 Score =  265 bits (677), Expect = 3e-68
 Identities = 146/325 (44%), Positives = 187/325 (57%)
 Frame = +1

Query: 88   YPKPLSPPYPEHSRQVELDRAKRAEAASSAGHALSRDHFLYEDDCFVAVNKPCGVYXXXX 267
            YPKP+SPP P  S+ +EL RA  A + SS  + L+RDH LYED+  +AVNKP GVY    
Sbjct: 40   YPKPISPPPPPISKDIELRRAMEASSKSSLFN-LTRDHVLYEDEYLMAVNKPKGVYCEAV 98

Query: 268  XXXXXXXXXXXXXXXXXXXXXXXRLDRDTSGVMIITKQHKIAAKFVKAYTERRICKTYLA 447
                                   RLDRDTSGVMIITK HK+AAK VKA+TE +I K+Y+A
Sbjct: 99   LRSAPQIVLDSSSEFHLAN----RLDRDTSGVMIITKSHKVAAKLVKAFTEHKIRKSYIA 154

Query: 448  LCICPSPTWNHIYIESGHGRSKYGAWRTYSKNDVGKVLPGGSTVRDMSTLLNVLSINGFP 627
            LCI  SP W  I + SGHGRSK+GAWR Y+  DVG+VLPGGS VRDM T   V+S+NG  
Sbjct: 155  LCIGSSPNWRKITVSSGHGRSKHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVNGVE 214

Query: 628  KTTTDAIHDSDTFLQSINLTATTLKNPDKITLDGMNQVVATEQLETGLGLQPSDMSMPSD 807
              + +                             +  V+  E        +  ++S   D
Sbjct: 215  TESCE-----------------------------VENVIVVE--------REQELSCAGD 237

Query: 808  EKNDIVLLRAYPLTGRTHQIRLHCQYARLPIRGDAKYGGVLTWKDDTFESHALHAETVCF 987
               D+V++RA+P +GRTHQIRLHCQY  + IRGD KY G+  W+  TFE H LHAE +  
Sbjct: 238  ---DVVVVRAFPRSGRTHQIRLHCQYLGISIRGDVKYHGMYEWRGRTFEGHELHAECLSL 294

Query: 988  EHPVTGNLVKLRAPLPEWALKSFNC 1062
            +HPVT + + +RAPLP WA +  +C
Sbjct: 295  DHPVTDDPIVIRAPLPCWATRDESC 319


>ref|XP_004230301.1| PREDICTED: RNA pseudourine synthase 1-like [Solanum lycopersicum]
          Length = 308

 Score =  265 bits (676), Expect = 4e-68
 Identities = 144/323 (44%), Positives = 188/323 (58%), Gaps = 2/323 (0%)
 Frame = +1

Query: 88   YPKPLSPPYPEHSRQVELDRAKRAEAASSAGHALSRDHFLYEDDCFVAVNKPCGVYXXXX 267
            YP PLSPP P  S+ +E +RA  A ++ SA  +LSR H ++ED+  +AVNKP G+Y    
Sbjct: 17   YPVPLSPPLPTLSKDIEPNRALTA-SSKSALFSLSRSHVIFEDEWIIAVNKPQGIYCESV 75

Query: 268  XXXXXXXXXXXXXXXXXXXXXXXRLDRDTSGVMIITKQHKIAAKFVKAYTERRICKTYLA 447
                                   RLDRDTSGVM+ITK HK+AAKFVKA+T+ ++ KTYLA
Sbjct: 76   LSSLPDLLNDTGANVSELHLAN-RLDRDTSGVMLITKLHKVAAKFVKAFTDHKVRKTYLA 134

Query: 448  LCICPSPTWNHIYIESGHGRSKYGAWRTYSKNDVGKVLPGGSTVRDMSTLLNVLSINGFP 627
             C+  +P W  I ++SGHGRSKYGAWR Y+ +D G+ LPGGS V+DM T   VLS+NG  
Sbjct: 135  YCVGLAPKWEKITVKSGHGRSKYGAWRVYAASDAGRKLPGGSLVKDMETSFEVLSVNGLG 194

Query: 628  --KTTTDAIHDSDTFLQSINLTATTLKNPDKITLDGMNQVVATEQLETGLGLQPSDMSMP 801
              K  +D   D D                          V+  E+   G           
Sbjct: 195  CFKEVSDLHKDEDI-------------------------VIVQEKSVIG----------- 218

Query: 802  SDEKNDIVLLRAYPLTGRTHQIRLHCQYARLPIRGDAKYGGVLTWKDDTFESHALHAETV 981
             D K D +L+RA P +GRTHQIRLHCQY  +PIRGD +Y GV  WK + ++SH LHAE++
Sbjct: 219  CDLKKDEILVRASPRSGRTHQIRLHCQYLGIPIRGDVRYEGVYEWKGNIYDSHELHAESL 278

Query: 982  CFEHPVTGNLVKLRAPLPEWALK 1050
             FEHP+TG  + L+APLP WA++
Sbjct: 279  SFEHPITGKSMLLQAPLPSWAIQ 301


>gb|EXB98832.1| RNA pseudourine synthase 1 [Morus notabilis]
          Length = 319

 Score =  264 bits (674), Expect = 7e-68
 Identities = 143/326 (43%), Positives = 186/326 (57%), Gaps = 7/326 (2%)
 Frame = +1

Query: 88   YPKPLSPPYPEHSRQVELDRAKRAEAASSAGHALSRDHFLYEDDCFVAVNKPCGVYXXXX 267
            YP PLSPP P  S+ VEL RA  A + SS   ++SR+ F++ED+C VAVNKP G+Y    
Sbjct: 22   YPVPLSPPPPPVSKDVELSRAMSASSKSSL-FSISRNDFVFEDECLVAVNKPQGIYCESV 80

Query: 268  XXXXXXXXXXXXXXXXXXXXXXX-------RLDRDTSGVMIITKQHKIAAKFVKAYTERR 426
                                          RLDRDTSG+M+ITK HK+A+K VKA+T  +
Sbjct: 81   FDSVRKVLSDSSEPGQLETEASPPELHLANRLDRDTSGLMLITKSHKVASKLVKAFTTHK 140

Query: 427  ICKTYLALCICPSPTWNHIYIESGHGRSKYGAWRTYSKNDVGKVLPGGSTVRDMSTLLNV 606
            + KTY+A C+  +P W +I I+SGHGRSK+GAWR Y+ +DVG+ LPGGS VRDM T   V
Sbjct: 141  VSKTYIAFCVGSAPKWENITIKSGHGRSKFGAWRVYAASDVGRTLPGGSVVRDMETSFEV 200

Query: 607  LSINGFPKTTTDAIHDSDTFLQSINLTATTLKNPDKITLDGMNQVVATEQLETGLGLQPS 786
            LS+NG                Q ++      K P +   DG N ++  E+          
Sbjct: 201  LSVNG----------------QRVS------KEPSEFRKDGNNVLIVEEK---------- 228

Query: 787  DMSMPSDEKNDIVLLRAYPLTGRTHQIRLHCQYARLPIRGDAKYGGVLTWKDDTFESHAL 966
               +  D K D +L+RA P +GR+HQIRLHCQY  + +RGD KY GV  WK  T+  H L
Sbjct: 229  -ALIDRDGKKDEILVRARPKSGRSHQIRLHCQYLGISLRGDVKYEGVSQWKGKTYNGHEL 287

Query: 967  HAETVCFEHPVTGNLVKLRAPLPEWA 1044
            HAE++ FEHP+T  LV L  PLP WA
Sbjct: 288  HAESLSFEHPITSLLVVLSTPLPMWA 313


>ref|XP_006344754.1| PREDICTED: RNA pseudouridine synthase 1-like [Solanum tuberosum]
          Length = 332

 Score =  264 bits (674), Expect = 7e-68
 Identities = 144/323 (44%), Positives = 187/323 (57%), Gaps = 2/323 (0%)
 Frame = +1

Query: 88   YPKPLSPPYPEHSRQVELDRAKRAEAASSAGHALSRDHFLYEDDCFVAVNKPCGVYXXXX 267
            YP PLSPP P  S+ +E +RA  A ++ SA  +LSR H ++ED+  +AVNKP G+Y    
Sbjct: 47   YPVPLSPPLPALSKDIEPNRALTA-SSKSALFSLSRSHVIFEDEWIIAVNKPQGIYCESV 105

Query: 268  XXXXXXXXXXXXXXXXXXXXXXXRLDRDTSGVMIITKQHKIAAKFVKAYTERRICKTYLA 447
                                   RLDRDTSGVM+ITK HK+AAKFVKA+T+ ++ KTYLA
Sbjct: 106  LSSLPDLLNDTGANVSELHLAN-RLDRDTSGVMLITKLHKVAAKFVKAFTDHKVRKTYLA 164

Query: 448  LCICPSPTWNHIYIESGHGRSKYGAWRTYSKNDVGKVLPGGSTVRDMSTLLNVLSINGFP 627
             C+  +P W  I ++SGHGRSKYGAWR Y+ +D G+ LPGGS V+DM T   VLS+NG  
Sbjct: 165  YCVGLAPKWEKITVKSGHGRSKYGAWRVYAASDAGRKLPGGSLVKDMETSFEVLSVNGLG 224

Query: 628  --KTTTDAIHDSDTFLQSINLTATTLKNPDKITLDGMNQVVATEQLETGLGLQPSDMSMP 801
              K  +D   D D                          V+  E+   G           
Sbjct: 225  CFKEVSDFHKDEDV-------------------------VIVQEKSVIG----------- 248

Query: 802  SDEKNDIVLLRAYPLTGRTHQIRLHCQYARLPIRGDAKYGGVLTWKDDTFESHALHAETV 981
             D K D +L+RA P +GRTHQIRLHCQY  +PIRGD +Y GV  WK   ++SH LHAE++
Sbjct: 249  CDLKKDEILVRASPRSGRTHQIRLHCQYLGIPIRGDVRYEGVYEWKGSRYDSHELHAESL 308

Query: 982  CFEHPVTGNLVKLRAPLPEWALK 1050
             FEHP+TG  + L+APLP WA++
Sbjct: 309  SFEHPITGKPMLLQAPLPSWAIQ 331


>gb|EMJ06787.1| hypothetical protein PRUPE_ppa008866mg [Prunus persica]
          Length = 316

 Score =  263 bits (673), Expect = 9e-68
 Identities = 144/323 (44%), Positives = 182/323 (56%), Gaps = 4/323 (1%)
 Frame = +1

Query: 88   YPKPLSPPYPEHSRQVELDRAKRAEAASSAGHALSRDHFLYEDDCFVAVNKPCGVYXXXX 267
            YP PLSPP P  S+ +EL RA  A + SS   +LSRD  ++ED   + VNKP GVY    
Sbjct: 22   YPVPLSPPLPPISKHIELARAMSASSKSSL-FSLSRDDVVFEDQWLIVVNKPQGVYCESV 80

Query: 268  XXXXXXXXXXXXXXXXXXXXXXX----RLDRDTSGVMIITKQHKIAAKFVKAYTERRICK 435
                                       RLDRDTSG+M+ITK HK+A+K VKA+T+ +I K
Sbjct: 81   LESVPQLLCDSAESGTPANQLELHLANRLDRDTSGLMVITKSHKVASKLVKAFTDHKISK 140

Query: 436  TYLALCICPSPTWNHIYIESGHGRSKYGAWRTYSKNDVGKVLPGGSTVRDMSTLLNVLSI 615
            TY+A CI  +P W  I ++SGHGRSK+GAWR Y+ +DVG+ LPGGS VRDM T   VLSI
Sbjct: 141  TYIARCIGSAPKWERITLKSGHGRSKFGAWRVYAASDVGRTLPGGSMVRDMETSFEVLSI 200

Query: 616  NGFPKTTTDAIHDSDTFLQSINLTATTLKNPDKITLDGMNQVVATEQLETGLGLQPSDMS 795
            NG                        +LK P +   D  N +V  E+             
Sbjct: 201  NG----------------------QGSLKEPSEFKKDEANTIVVQEK-----------AV 227

Query: 796  MPSDEKNDIVLLRAYPLTGRTHQIRLHCQYARLPIRGDAKYGGVLTWKDDTFESHALHAE 975
            +  D K D +L+RA P +GRTHQIRLHCQY  + IRGD KY GV  WK  T++ H LHAE
Sbjct: 228  IDKDTKKDEILVRARPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWKGRTYDGHELHAE 287

Query: 976  TVCFEHPVTGNLVKLRAPLPEWA 1044
            ++ FEHP+TG  V  +AP+P WA
Sbjct: 288  SLSFEHPITGLPVMFQAPVPSWA 310


>ref|XP_006433526.1| hypothetical protein CICLE_v10001637mg [Citrus clementina]
            gi|567881937|ref|XP_006433527.1| hypothetical protein
            CICLE_v10001637mg [Citrus clementina]
            gi|557535648|gb|ESR46766.1| hypothetical protein
            CICLE_v10001637mg [Citrus clementina]
            gi|557535649|gb|ESR46767.1| hypothetical protein
            CICLE_v10001637mg [Citrus clementina]
          Length = 357

 Score =  263 bits (672), Expect = 1e-67
 Identities = 145/334 (43%), Positives = 187/334 (55%), Gaps = 12/334 (3%)
 Frame = +1

Query: 88   YPKPLSPPYPEHSRQVELDRAKRAEAASSAGHALSRDHFLYEDDCFVAVNKPCGVYXXXX 267
            YP PLSPP P  S+ +EL RA  A + SS  + LSR   LYED+ FVAVNKP GVY    
Sbjct: 52   YPTPLSPPLPAISKDIELTRAMSASSKSSL-YKLSRSDVLYEDEWFVAVNKPQGVYCESV 110

Query: 268  XXXXXXXXXXXXXXXXXXXXXXX------------RLDRDTSGVMIITKQHKIAAKFVKA 411
                                               RLDRDTSGVM+ITK HK+A+K VKA
Sbjct: 111  LASVPCFLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKA 170

Query: 412  YTERRICKTYLALCICPSPTWNHIYIESGHGRSKYGAWRTYSKNDVGKVLPGGSTVRDMS 591
            +T+ ++ KTY+ALCI P+P W  I I SGHGRSK+GAWR Y+ +DVG+VLPGGS VRDM 
Sbjct: 171  FTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMV 230

Query: 592  TLLNVLSINGFPKTTTDAIHDSDTFLQSINLTATTLKNPDKITLDGMNQVVATEQLETGL 771
            T   VLS+NG                        + K P ++     N +V  ++     
Sbjct: 231  TSFEVLSVNG----------------------EGSFKEPSELQEHEENNIVVEKK----- 263

Query: 772  GLQPSDMSMPSDEKNDIVLLRAYPLTGRTHQIRLHCQYARLPIRGDAKYGGVLTWKDDTF 951
                    + +D K + +L+RA+P +GRTHQIRLHCQY  + IRGD KY GV  W    +
Sbjct: 264  ------AVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRY 317

Query: 952  ESHALHAETVCFEHPVTGNLVKLRAPLPEWALKS 1053
            + H LHAE++ F+HPVTG  V ++APLP W  ++
Sbjct: 318  DGHELHAESLSFDHPVTGCPVMVQAPLPLWGTEA 351


>ref|NP_001067018.1| Os12g0560500 [Oryza sativa Japonica Group]
            gi|122203511|sp|Q2QNM3.1|PUS1_ORYSJ RecName: Full=RNA
            pseudouridine synthase 1; AltName: Full=RNA
            pseudouridylate synthase 1; AltName: Full=RNA-uridine
            isomerase 1 gi|77556134|gb|ABA98930.1| RNA
            pseudouridylate synthase, putative, expressed [Oryza
            sativa Japonica Group] gi|113649525|dbj|BAF30037.1|
            Os12g0560500 [Oryza sativa Japonica Group]
            gi|125537021|gb|EAY83509.1| hypothetical protein
            OsI_38723 [Oryza sativa Indica Group]
            gi|215692563|dbj|BAG87983.1| unnamed protein product
            [Oryza sativa Japonica Group]
          Length = 345

 Score =  263 bits (672), Expect = 1e-67
 Identities = 145/320 (45%), Positives = 179/320 (55%), Gaps = 1/320 (0%)
 Frame = +1

Query: 88   YPKPLSPPYPEHSRQVELDRAKRAEAASSAGHALSRDHFLYEDDCFVAVNKPCGVYXXXX 267
            YP P+SPPYP  S+ VEL RA  A A S+A    S    ++ED+    V+KP GVY    
Sbjct: 51   YPVPVSPPYPAASKDVELRRAMTASARSAA---YSSAPVVFEDEWLAVVDKPAGVYCDAL 107

Query: 268  XXXXXXXXXXXXXXXXXXXXXXX-RLDRDTSGVMIITKQHKIAAKFVKAYTERRICKTYL 444
                                    RLDRDTSG+M+ITK +K+A K VKA+TE ++ KTYL
Sbjct: 108  LSALPCSAATLGDEATKPNLHLANRLDRDTSGLMVITKCNKVAGKLVKAFTEHKVKKTYL 167

Query: 445  ALCICPSPTWNHIYIESGHGRSKYGAWRTYSKNDVGKVLPGGSTVRDMSTLLNVLSINGF 624
            ALCI   P W  I I SGHGRSK+GAWR Y+ +DVG+ LPGGS VRDMST   VL ING 
Sbjct: 168  ALCIGYPPAWEKIKICSGHGRSKHGAWRVYAMSDVGRSLPGGSVVRDMSTRFEVLGING- 226

Query: 625  PKTTTDAIHDSDTFLQSINLTATTLKNPDKITLDGMNQVVATEQLETGLGLQPSDMSMPS 804
                                     + P    +D    +   E        + +D++   
Sbjct: 227  ---------------------KGQFREPSNFEVDETESITVQE--------KAADLTSDG 257

Query: 805  DEKNDIVLLRAYPLTGRTHQIRLHCQYARLPIRGDAKYGGVLTWKDDTFESHALHAETVC 984
            DEKN I+L+RAYP +GRTHQIRLHCQY   PIRGD KY GV+ W    ++ HALHAE++ 
Sbjct: 258  DEKNSIILVRAYPQSGRTHQIRLHCQYLGFPIRGDVKYSGVIEWNGVDYDGHALHAESLS 317

Query: 985  FEHPVTGNLVKLRAPLPEWA 1044
            F HPVTG  V  R+PLP WA
Sbjct: 318  FVHPVTGLPVTFRSPLPSWA 337


>gb|EEE53427.1| hypothetical protein OsJ_36505 [Oryza sativa Japonica Group]
          Length = 423

 Score =  263 bits (672), Expect = 1e-67
 Identities = 145/320 (45%), Positives = 179/320 (55%), Gaps = 1/320 (0%)
 Frame = +1

Query: 88   YPKPLSPPYPEHSRQVELDRAKRAEAASSAGHALSRDHFLYEDDCFVAVNKPCGVYXXXX 267
            YP P+SPPYP  S+ VEL RA  A A S+A    S    ++ED+    V+KP GVY    
Sbjct: 129  YPVPVSPPYPAASKDVELRRAMTASARSAA---YSSAPVVFEDEWLAVVDKPAGVYCDAL 185

Query: 268  XXXXXXXXXXXXXXXXXXXXXXX-RLDRDTSGVMIITKQHKIAAKFVKAYTERRICKTYL 444
                                    RLDRDTSG+M+ITK +K+A K VKA+TE ++ KTYL
Sbjct: 186  LSALPCSAATLGDEATKPNLHLANRLDRDTSGLMVITKCNKVAGKLVKAFTEHKVKKTYL 245

Query: 445  ALCICPSPTWNHIYIESGHGRSKYGAWRTYSKNDVGKVLPGGSTVRDMSTLLNVLSINGF 624
            ALCI   P W  I I SGHGRSK+GAWR Y+ +DVG+ LPGGS VRDMST   VL ING 
Sbjct: 246  ALCIGYPPAWEKIKICSGHGRSKHGAWRVYAMSDVGRSLPGGSVVRDMSTRFEVLGING- 304

Query: 625  PKTTTDAIHDSDTFLQSINLTATTLKNPDKITLDGMNQVVATEQLETGLGLQPSDMSMPS 804
                                     + P    +D    +   E        + +D++   
Sbjct: 305  ---------------------KGQFREPSNFEVDETESITVQE--------KAADLTSDG 335

Query: 805  DEKNDIVLLRAYPLTGRTHQIRLHCQYARLPIRGDAKYGGVLTWKDDTFESHALHAETVC 984
            DEKN I+L+RAYP +GRTHQIRLHCQY   PIRGD KY GV+ W    ++ HALHAE++ 
Sbjct: 336  DEKNSIILVRAYPQSGRTHQIRLHCQYLGFPIRGDVKYSGVIEWNGVDYDGHALHAESLS 395

Query: 985  FEHPVTGNLVKLRAPLPEWA 1044
            F HPVTG  V  R+PLP WA
Sbjct: 396  FVHPVTGLPVTFRSPLPSWA 415


>ref|XP_003579309.1| PREDICTED: RNA pseudourine synthase 1-like [Brachypodium distachyon]
          Length = 308

 Score =  263 bits (671), Expect = 1e-67
 Identities = 145/321 (45%), Positives = 182/321 (56%), Gaps = 2/321 (0%)
 Frame = +1

Query: 88   YPKPLSPPYPEHSRQVELDRAKRAEAASSAGHALSRDHFLYEDDCFVAVNKPCGVYXXXX 267
            YP P+SPPYP  S+ VEL RA  A A S A  + +    ++ED+    V+KP GVY    
Sbjct: 13   YPCPVSPPYPAVSKDVELRRAMTASARSGAYASAA---VVFEDEWLSVVDKPAGVYCDAL 69

Query: 268  XXXXXXXXXXXXXXXXXXXXXXX--RLDRDTSGVMIITKQHKIAAKFVKAYTERRICKTY 441
                                     RLDRDTSG+M+ITK +K+AAK VKA+TE ++ KTY
Sbjct: 70   LSALPCYAAAAAGDPATKPNLHLANRLDRDTSGLMVITKCNKVAAKLVKAFTEHKVKKTY 129

Query: 442  LALCICPSPTWNHIYIESGHGRSKYGAWRTYSKNDVGKVLPGGSTVRDMSTLLNVLSING 621
            LALCI   PTW  I I SGHGRSK+GAWR Y+ +DVG+ LPGGS+VRDMST   VL ING
Sbjct: 130  LALCIGYPPTWEKIRICSGHGRSKHGAWRVYAMSDVGRTLPGGSSVRDMSTKFEVLGING 189

Query: 622  FPKTTTDAIHDSDTFLQSINLTATTLKNPDKITLDGMNQVVATEQLETGLGLQPSDMSMP 801
                                      + P  + +D +  +   E        + +D S  
Sbjct: 190  ----------------------KGQFREPSNVNIDDIESITVQE--------KAADHSST 219

Query: 802  SDEKNDIVLLRAYPLTGRTHQIRLHCQYARLPIRGDAKYGGVLTWKDDTFESHALHAETV 981
             D KN ++L+RAYP +GRTHQIRLHCQY   PIRGD KYGGV+ W     + HALH+E++
Sbjct: 220  DDLKNHMILVRAYPQSGRTHQIRLHCQYLGFPIRGDVKYGGVIEWNGVDCDGHALHSESL 279

Query: 982  CFEHPVTGNLVKLRAPLPEWA 1044
             F HPVTG  +  RAPLP WA
Sbjct: 280  SFVHPVTGLPITFRAPLPSWA 300


>ref|XP_006472187.1| PREDICTED: RNA pseudouridine synthase 1-like [Citrus sinensis]
          Length = 324

 Score =  262 bits (669), Expect = 2e-67
 Identities = 144/334 (43%), Positives = 186/334 (55%), Gaps = 12/334 (3%)
 Frame = +1

Query: 88   YPKPLSPPYPEHSRQVELDRAKRAEAASSAGHALSRDHFLYEDDCFVAVNKPCGVYXXXX 267
            YP PLSPP P  S+ +EL RA  A + SS  + LSR   LYED+  VAVNKP GVY    
Sbjct: 19   YPTPLSPPLPAISKDIELTRAMSASSKSSL-YKLSRSDVLYEDEWLVAVNKPQGVYCESV 77

Query: 268  XXXXXXXXXXXXXXXXXXXXXXX------------RLDRDTSGVMIITKQHKIAAKFVKA 411
                                               RLDRDTSGVM+ITK HK+A+K VKA
Sbjct: 78   LASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKA 137

Query: 412  YTERRICKTYLALCICPSPTWNHIYIESGHGRSKYGAWRTYSKNDVGKVLPGGSTVRDMS 591
            +T+ ++ KTY+ALCI P+P W  I I SGHGRSK+GAWR Y+ +DVG+VLPGGS VRDM 
Sbjct: 138  FTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMV 197

Query: 592  TLLNVLSINGFPKTTTDAIHDSDTFLQSINLTATTLKNPDKITLDGMNQVVATEQLETGL 771
            T   VLS+NG                        + K P ++  D  N +V  ++     
Sbjct: 198  TSFEVLSVNG----------------------EGSFKEPSELQEDEENNIVVEKK----- 230

Query: 772  GLQPSDMSMPSDEKNDIVLLRAYPLTGRTHQIRLHCQYARLPIRGDAKYGGVLTWKDDTF 951
                    + +D K + +L+R +P +GRTHQIRLHCQY  + IRGD KY GV  W    +
Sbjct: 231  ------AVLDADAKKNEILVRVFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRY 284

Query: 952  ESHALHAETVCFEHPVTGNLVKLRAPLPEWALKS 1053
            + H LHAE++  EHP+TG  V ++APLP WA ++
Sbjct: 285  DGHELHAESLSLEHPITGCPVMVQAPLPLWATQA 318


>gb|EXC51319.1| RNA pseudourine synthase 1 [Morus notabilis]
          Length = 319

 Score =  261 bits (667), Expect = 4e-67
 Identities = 142/326 (43%), Positives = 185/326 (56%), Gaps = 7/326 (2%)
 Frame = +1

Query: 88   YPKPLSPPYPEHSRQVELDRAKRAEAASSAGHALSRDHFLYEDDCFVAVNKPCGVYXXXX 267
            YP PLSPP P  S+ VEL RA  A + SS   ++SR+ F++ED+C VAVNKP G+Y    
Sbjct: 22   YPVPLSPPPPPVSKDVELSRAMSASSKSSL-FSISRNDFVFEDECLVAVNKPQGIYCESV 80

Query: 268  XXXXXXXXXXXXXXXXXXXXXXX-------RLDRDTSGVMIITKQHKIAAKFVKAYTERR 426
                                          RLDRDTSG+M+ITK HK+A+K VKA+T  +
Sbjct: 81   FDSVRKVLSDSSEPGQLETEASPPELHLANRLDRDTSGLMLITKSHKVASKLVKAFTTHK 140

Query: 427  ICKTYLALCICPSPTWNHIYIESGHGRSKYGAWRTYSKNDVGKVLPGGSTVRDMSTLLNV 606
            + KTY+A C+  +P W +I I+SGHGRSK+GAWR Y+ +DVG+ LPGGS VRDM T   V
Sbjct: 141  VSKTYIAFCVGSAPKWENITIKSGHGRSKFGAWRVYAASDVGRTLPGGSVVRDMETSFEV 200

Query: 607  LSINGFPKTTTDAIHDSDTFLQSINLTATTLKNPDKITLDGMNQVVATEQLETGLGLQPS 786
            LS+NG                Q ++      K P +   DG N ++  E+          
Sbjct: 201  LSVNG----------------QRVS------KEPSEFRKDGNNVLIVEEK---------- 228

Query: 787  DMSMPSDEKNDIVLLRAYPLTGRTHQIRLHCQYARLPIRGDAKYGGVLTWKDDTFESHAL 966
               +  D K D +L+RA P +GR+HQIRLHCQY  + +RGD KY GV  WK  T+  H L
Sbjct: 229  -ALIDRDGKKDEILVRARPKSGRSHQIRLHCQYLGISLRGDVKYEGVSQWKGKTYNGHEL 287

Query: 967  HAETVCFEHPVTGNLVKLRAPLPEWA 1044
            HAE++ FEHP+T   V L  PLP WA
Sbjct: 288  HAESLSFEHPITSLPVVLSTPLPMWA 313


>ref|XP_006392435.1| hypothetical protein EUTSA_v10023586mg [Eutrema salsugineum]
            gi|557088941|gb|ESQ29721.1| hypothetical protein
            EUTSA_v10023586mg [Eutrema salsugineum]
          Length = 333

 Score =  260 bits (664), Expect = 9e-67
 Identities = 152/347 (43%), Positives = 197/347 (56%)
 Frame = +1

Query: 22   VSLEDVESRNTXXXXXXXXXXXYPKPLSPPYPEHSRQVELDRAKRAEAASSAGHALSRDH 201
            VS++ +E+RN            YPKP+S P P  S+ +EL RA  A + SS  + L+R+ 
Sbjct: 28   VSIKAMEARNDLPTTVDTNQN-YPKPISAPPPPISKDIELKRAMEASSKSSLFN-LTRND 85

Query: 202  FLYEDDCFVAVNKPCGVYXXXXXXXXXXXXXXXXXXXXXXXXXXXRLDRDTSGVMIITKQ 381
             LYED+  +AVNKP G+Y                           RLDRDTSGVM+ITK 
Sbjct: 86   VLYEDEWLMAVNKPKGIYCESVLSSAPKVIVDSSSTANEFHLAN-RLDRDTSGVMLITKS 144

Query: 382  HKIAAKFVKAYTERRICKTYLALCICPSPTWNHIYIESGHGRSKYGAWRTYSKNDVGKVL 561
            HK+AAK VKA+TE +I K+Y+ALCI  SP W+ I + SGHGRSK+GAWR Y+  DVG+VL
Sbjct: 145  HKVAAKLVKAFTEHKIRKSYIALCIGSSPNWSKITVRSGHGRSKHGAWRVYAALDVGRVL 204

Query: 562  PGGSTVRDMSTLLNVLSINGFPKTTTDAIHDSDTFLQSINLTATTLKNPDKITLDGMNQV 741
            PGGS VRDM T   V+S+NG  KT                     L+    I ++G    
Sbjct: 205  PGGSFVRDMETTFEVVSVNG-EKT-------------------EPLEVESVIVVEG---- 240

Query: 742  VATEQLETGLGLQPSDMSMPSDEKNDIVLLRAYPLTGRTHQIRLHCQYARLPIRGDAKYG 921
                  E GL          S   +D+V++RA+P +GRTHQIRLHC+Y  +PIRGD KY 
Sbjct: 241  ------EPGL----------SCVGDDVVVVRAFPRSGRTHQIRLHCRYLGIPIRGDVKYH 284

Query: 922  GVLTWKDDTFESHALHAETVCFEHPVTGNLVKLRAPLPEWALKSFNC 1062
            G+  W+  TFE H LHAE++ F+HPVTG  + +RAPLP W      C
Sbjct: 285  GMYEWRGRTFEGHELHAESLSFDHPVTGEPIVIRAPLPCWVAGDGEC 331


>tpg|DAA55259.1| TPA: hypothetical protein ZEAMMB73_192305 [Zea mays]
          Length = 340

 Score =  260 bits (664), Expect = 9e-67
 Identities = 139/319 (43%), Positives = 179/319 (56%)
 Frame = +1

Query: 88   YPKPLSPPYPEHSRQVELDRAKRAEAASSAGHALSRDHFLYEDDCFVAVNKPCGVYXXXX 267
            YP P+SPPYP  S+ +EL RA  A A S+A    +    ++ED+    V+KP GVY    
Sbjct: 47   YPSPVSPPYPATSKDLELRRAMTASARSAA---FASADVVFEDEWLAVVDKPAGVYCDAL 103

Query: 268  XXXXXXXXXXXXXXXXXXXXXXXRLDRDTSGVMIITKQHKIAAKFVKAYTERRICKTYLA 447
                                   RLDRDTSG+M+ITK +K+A K VKA+T+ ++ KTYLA
Sbjct: 104  LTSFPCSAVSENPATKPNLHLANRLDRDTSGLMVITKCNKVAGKLVKAFTDHKVKKTYLA 163

Query: 448  LCICPSPTWNHIYIESGHGRSKYGAWRTYSKNDVGKVLPGGSTVRDMSTLLNVLSINGFP 627
            LCI   P W  I I SGHGRSK+GAWR Y+ +DVG+ LPGGS VRDMST   VL +NG  
Sbjct: 164  LCIGFPPAWEKIKICSGHGRSKHGAWRVYAMSDVGRSLPGGSVVRDMSTRFEVLGVNG-- 221

Query: 628  KTTTDAIHDSDTFLQSINLTATTLKNPDKITLDGMNQVVATEQLETGLGLQPSDMSMPSD 807
                                    + P  +  D +  +   E        + +D +   D
Sbjct: 222  --------------------KGQFREPYSLDTDDIEPITVQE--------KATDQTCGGD 253

Query: 808  EKNDIVLLRAYPLTGRTHQIRLHCQYARLPIRGDAKYGGVLTWKDDTFESHALHAETVCF 987
              + ++L+RAYP +GRTHQIRLHCQY  LPIRGD KYGGV+ W     E HALHAE++ F
Sbjct: 254  ANSSVILVRAYPQSGRTHQIRLHCQYLGLPIRGDVKYGGVIEWDGVECEGHALHAESLSF 313

Query: 988  EHPVTGNLVKLRAPLPEWA 1044
             HP+TG  + LR+PLP WA
Sbjct: 314  VHPITGLPITLRSPLPPWA 332


>gb|ACN26382.1| unknown [Zea mays]
          Length = 307

 Score =  260 bits (664), Expect = 9e-67
 Identities = 139/319 (43%), Positives = 179/319 (56%)
 Frame = +1

Query: 88   YPKPLSPPYPEHSRQVELDRAKRAEAASSAGHALSRDHFLYEDDCFVAVNKPCGVYXXXX 267
            YP P+SPPYP  S+ +EL RA  A A S+A    +    ++ED+    V+KP GVY    
Sbjct: 14   YPSPVSPPYPATSKDLELRRAMTASARSAA---FASADVVFEDEWLAVVDKPAGVYCDAL 70

Query: 268  XXXXXXXXXXXXXXXXXXXXXXXRLDRDTSGVMIITKQHKIAAKFVKAYTERRICKTYLA 447
                                   RLDRDTSG+M+ITK +K+A K VKA+T+ ++ KTYLA
Sbjct: 71   LTSFPCSAVSENPATKPNLHLANRLDRDTSGLMVITKCNKVAGKLVKAFTDHKVKKTYLA 130

Query: 448  LCICPSPTWNHIYIESGHGRSKYGAWRTYSKNDVGKVLPGGSTVRDMSTLLNVLSINGFP 627
            LCI   P W  I I SGHGRSK+GAWR Y+ +DVG+ LPGGS VRDMST   VL +NG  
Sbjct: 131  LCIGFPPAWEKIKICSGHGRSKHGAWRVYAMSDVGRSLPGGSVVRDMSTRFEVLGVNG-- 188

Query: 628  KTTTDAIHDSDTFLQSINLTATTLKNPDKITLDGMNQVVATEQLETGLGLQPSDMSMPSD 807
                                    + P  +  D +  +   E        + +D +   D
Sbjct: 189  --------------------KGQFREPYSLDTDDIEPITVQE--------KATDQTCGGD 220

Query: 808  EKNDIVLLRAYPLTGRTHQIRLHCQYARLPIRGDAKYGGVLTWKDDTFESHALHAETVCF 987
              + ++L+RAYP +GRTHQIRLHCQY  LPIRGD KYGGV+ W     E HALHAE++ F
Sbjct: 221  ANSSVILVRAYPQSGRTHQIRLHCQYLGLPIRGDVKYGGVIEWDGVECEGHALHAESLSF 280

Query: 988  EHPVTGNLVKLRAPLPEWA 1044
             HP+TG  + LR+PLP WA
Sbjct: 281  VHPITGLPITLRSPLPPWA 299


>ref|XP_002512503.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223548464|gb|EEF49955.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 321

 Score =  259 bits (663), Expect = 1e-66
 Identities = 144/331 (43%), Positives = 185/331 (55%), Gaps = 9/331 (2%)
 Frame = +1

Query: 88   YPKPLSPPYPEHSRQVELDRAKRAEAASSAGHALSRDHFLYEDDCFVAVNKPCGVYXXXX 267
            YP PLSPP P  S+Q+EL RA  A + SS    LSR   LYED   +AVNKP GVY    
Sbjct: 22   YPTPLSPPLPSISKQIELARALSASSRSSL-FTLSRSDVLYEDQWLIAVNKPQGVYCETV 80

Query: 268  XXXXXXXXXXXXXXXXXXXXXXX---------RLDRDTSGVMIITKQHKIAAKFVKAYTE 420
                                            RLDRDTSGVM+ITK HK+A+K VKA+T+
Sbjct: 81   LESVPRVLAASAELTDPSEGAEGNPHEFHLANRLDRDTSGVMVITKSHKVASKLVKAFTD 140

Query: 421  RRICKTYLALCICPSPTWNHIYIESGHGRSKYGAWRTYSKNDVGKVLPGGSTVRDMSTLL 600
             +I KTY+ALCI  +P W  I I+SGHGRSK+G WR Y+ +DVG+ LPGGSTV+DM T  
Sbjct: 141  HKIKKTYIALCIGLAPKWEKITIKSGHGRSKFGVWRVYAASDVGQTLPGGSTVKDMETSF 200

Query: 601  NVLSINGFPKTTTDAIHDSDTFLQSINLTATTLKNPDKITLDGMNQVVATEQLETGLGLQ 780
             +LS+NG                                   G  + ++  + +  + + 
Sbjct: 201  ELLSVNG----------------------------------QGSFKELSEFEKDENILVV 226

Query: 781  PSDMSMPSDEKNDIVLLRAYPLTGRTHQIRLHCQYARLPIRGDAKYGGVLTWKDDTFESH 960
                +  +D K   +L+RA+P +GRTHQIRLHCQY  + IRGD KY GV  W+  T++ H
Sbjct: 227  EEKAAKNADVKKVEILVRAFPQSGRTHQIRLHCQYLGISIRGDVKYEGVYEWEGRTYDGH 286

Query: 961  ALHAETVCFEHPVTGNLVKLRAPLPEWALKS 1053
             LHAET+ FEHPVTG  V LRAPLP WA+++
Sbjct: 287  ELHAETLSFEHPVTGVPVMLRAPLPSWAIQA 317


>ref|XP_006664100.1| PREDICTED: RNA pseudouridine synthase 1-like [Oryza brachyantha]
          Length = 346

 Score =  257 bits (656), Expect = 8e-66
 Identities = 145/324 (44%), Positives = 182/324 (56%), Gaps = 5/324 (1%)
 Frame = +1

Query: 88   YPKPLSPPYPEHSRQVELDRAKRAEAASSAGHALSRDHFLYEDDCFVAVNKPCGVYXXXX 267
            YP P+SPPYP  S+ VEL RA  A A S+A    S    ++ED+    V+KP GVY    
Sbjct: 48   YPVPVSPPYPAVSKDVELRRAMTASARSAA---YSSATVVFEDEWLAVVDKPAGVYCDAL 104

Query: 268  XXXXXXXXXXXXXXXXXXXXXXX----RLDRDTSGVMIITKQHKIAAKFVKAYTERRICK 435
                                       RLDRDTSG+M+ITK +K+A K VKA+TE  + K
Sbjct: 105  LSVLPCPGSSAAASGDTSTKPNLHLANRLDRDTSGLMVITKCNKVAGKLVKAFTEHEVKK 164

Query: 436  TYLALCICPSPTWNHIYIESGHGRSKYGAWRTYSKNDVGKVLPGGSTVRDMSTLLNVLSI 615
            TYLALCI   PTW  I I SGHGRSK+GAWR Y+ +DVG+ LPGGS VRDMST   VL I
Sbjct: 165  TYLALCIGCPPTWEKIKICSGHGRSKHGAWRVYAMSDVGRSLPGGSVVRDMSTQFEVLGI 224

Query: 616  NGFPKTTTDAIHDSDTFLQSINLTATTLKNPDKITLDGMNQVVATEQLETGLGLQPSDMS 795
            NG                          + P  + +D +  +   E        + +D++
Sbjct: 225  NG----------------------NCQFREPSNLEVDEIESITVQE--------KAADLN 254

Query: 796  MPSDEKN-DIVLLRAYPLTGRTHQIRLHCQYARLPIRGDAKYGGVLTWKDDTFESHALHA 972
              SD KN  ++L+RAYP +GRTHQIRLHCQY  +PIRGD KYGGV+ W    ++ HALHA
Sbjct: 255  SNSDVKNSSMILVRAYPRSGRTHQIRLHCQYLGIPIRGDVKYGGVIEWNGVDYDGHALHA 314

Query: 973  ETVCFEHPVTGNLVKLRAPLPEWA 1044
            E++ F HPVTG  V  R+PL  WA
Sbjct: 315  ESLSFVHPVTGLPVTFRSPLASWA 338