BLASTX nr result
ID: Ephedra25_contig00022064
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00022064
(960 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 55 5e-06
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 55 6e-06
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 55 6e-06
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 55 8e-06
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 55.5 bits (132), Expect(2) = 5e-06
Identities = 54/246 (21%), Positives = 106/246 (43%), Gaps = 10/246 (4%)
Frame = +1
Query: 19 SEKESYAIGKKLKNILVGSIVDTIVRLRKQLHNLNYI*EKSMTEFM*ENFEIMDHFDICG 198
+EK S + KL++I + + + ++++ +L L E S+ + E +I+
Sbjct: 76 TEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHIAEFKKIVADLVSME 135
Query: 199 IQIDDFELFYLVMDALPSSWDAFKDSICLIKDKISFDALCQVLLEKEQ-----GNNRKIS 363
++ DD +L L++ +LP+S+ F+D+I L +D+++ + L KE+ N+ S
Sbjct: 136 VKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSS 195
Query: 364 SEYEALYAQ-----K*NNKRSYQXXXXXXXXXXXXXXXXYYHICDMNNHKIKYCSFNEKC 528
S+ EAL+ + K +N+++Y Y C + NH I ++C
Sbjct: 196 SKGEALHVRGRTENKTSNEKNYDRRGRSKSKPPGNKKFCVY--CKLKNHNI------DEC 247
Query: 529 SNYNSNRRRKPRSSH*MPSNQTPIEANMVEIKGDQACVFFTNKDFDKDE*FLDSGCNSHM 708
+ R+ + + A + + V F DE LDS C+ H+
Sbjct: 248 KKVQAKERKNKKD-----GKVSVASAAVSDDDSGDCLVVFAGCVAGHDEWILDSACSFHI 302
Query: 709 IGNREY 726
R +
Sbjct: 303 CTKRNW 308
Score = 22.3 bits (46), Expect(2) = 5e-06
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 843 LTDALYVEGLRKNLISLYKLMMQKY 917
L + Y+ G+ +NLISL L + Y
Sbjct: 349 LKNVRYIPGMSRNLISLSTLDAEGY 373
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 55.1 bits (131), Expect(2) = 6e-06
Identities = 54/246 (21%), Positives = 105/246 (42%), Gaps = 10/246 (4%)
Frame = +1
Query: 19 SEKESYAIGKKLKNILVGSIVDTIVRLRKQLHNLNYI*EKSMTEFM*ENFEIMDHFDICG 198
+EK S + KL++I + + + ++++ +L L E S+ M E +I+
Sbjct: 74 TEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAEFKKIVADLVSME 133
Query: 199 IQIDDFELFYLVMDALPSSWDAFKDSICLIKDKISFDALCQVLLEKEQ-----GNNRKIS 363
++ DD +L L++ +LP+S+ F+D+I L +D+++ + L KE+ N+ S
Sbjct: 134 VKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSS 193
Query: 364 SEYEALYAQ-----K*NNKRSYQXXXXXXXXXXXXXXXXYYHICDMNNHKIKYCSFNEKC 528
S+ EAL+ + + +N+++Y Y C + NH I ++C
Sbjct: 194 SKGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKFCVY--CKLKNHNI------DEC 245
Query: 529 SNYNSNRRRKPRSSH*MPSNQTPIEANMVEIKGDQACVFFTNKDFDKDE*FLDSGCNSHM 708
+ R+ + + A + V F DE LDS C+ H+
Sbjct: 246 KKVQAKERKNKKD-----GKVSVASAAASDDDSGDCLVVFAGCVAGHDEWILDSACSFHI 300
Query: 709 IGNREY 726
R +
Sbjct: 301 CTKRNW 306
Score = 22.3 bits (46), Expect(2) = 6e-06
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 843 LTDALYVEGLRKNLISLYKLMMQKY 917
L + Y+ G+ +NLISL L + Y
Sbjct: 347 LKNVRYIPGMSRNLISLSTLDAEGY 371
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 55.1 bits (131), Expect(2) = 6e-06
Identities = 54/246 (21%), Positives = 105/246 (42%), Gaps = 10/246 (4%)
Frame = +1
Query: 19 SEKESYAIGKKLKNILVGSIVDTIVRLRKQLHNLNYI*EKSMTEFM*ENFEIMDHFDICG 198
+EK S + KL++I + + + ++++ +L L E S+ M E +I+
Sbjct: 74 TEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAEFKKIVADLVSME 133
Query: 199 IQIDDFELFYLVMDALPSSWDAFKDSICLIKDKISFDALCQVLLEKEQ-----GNNRKIS 363
++ DD +L L++ +LP+S+ F+D+I L +D+++ + L KE+ N+ S
Sbjct: 134 VKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSS 193
Query: 364 SEYEALYAQ-----K*NNKRSYQXXXXXXXXXXXXXXXXYYHICDMNNHKIKYCSFNEKC 528
S+ EAL+ + + +N+++Y Y C + NH I ++C
Sbjct: 194 SKGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKFCVY--CKLKNHNI------DEC 245
Query: 529 SNYNSNRRRKPRSSH*MPSNQTPIEANMVEIKGDQACVFFTNKDFDKDE*FLDSGCNSHM 708
+ R+ + + A + V F DE LDS C+ H+
Sbjct: 246 KKVQAKERKNKKD-----GKVSVASAAASDDDSGDCLVVFAGCVAGHDEWILDSACSFHI 300
Query: 709 IGNREY 726
R +
Sbjct: 301 CTKRNW 306
Score = 22.3 bits (46), Expect(2) = 6e-06
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 843 LTDALYVEGLRKNLISLYKLMMQKY 917
L + Y+ G+ +NLISL L + Y
Sbjct: 347 LKNVRYIPGMSRNLISLSTLDAEGY 371
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 54.7 bits (130), Expect(2) = 8e-06
Identities = 54/245 (22%), Positives = 104/245 (42%), Gaps = 10/245 (4%)
Frame = +1
Query: 22 EKESYAIGKKLKNILVGSIVDTIVRLRKQLHNLNYI*EKSMTEFM*ENFEIMDHFDICGI 201
EK S + KL++I + + + ++++ +L L E S+ M E +I+ +
Sbjct: 75 EKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAEFKKIVADLVSMEV 134
Query: 202 QIDDFELFYLVMDALPSSWDAFKDSICLIKDKISFDALCQVLLEKEQ-----GNNRKISS 366
+ DD +L L++ +LP+S+ F+D+I L +D+++ + L KE+ N+ SS
Sbjct: 135 KYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSS 194
Query: 367 EYEALYAQ-----K*NNKRSYQXXXXXXXXXXXXXXXXYYHICDMNNHKIKYCSFNEKCS 531
+ EAL+ + + +N+++Y Y C + NH I ++C
Sbjct: 195 KGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKFCVY--CKLKNHNI------DECK 246
Query: 532 NYNSNRRRKPRSSH*MPSNQTPIEANMVEIKGDQACVFFTNKDFDKDE*FLDSGCNSHMI 711
+ R+ + + A + V F DE LDS C+ H+
Sbjct: 247 KVQAKERKNKKD-----GKVSVASAAASDDDSGDCLVVFAGCVAGHDEWILDSACSFHIC 301
Query: 712 GNREY 726
R +
Sbjct: 302 TKRNW 306
Score = 22.3 bits (46), Expect(2) = 8e-06
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 843 LTDALYVEGLRKNLISLYKLMMQKY 917
L + Y+ G+ +NLISL L + Y
Sbjct: 347 LKNVRYIPGMSRNLISLSTLDAEGY 371