BLASTX nr result
ID: Ephedra25_contig00020453
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00020453
(982 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_002519975.1| ribosomal protein S18 (chloroplast) [Ephedra... 168 3e-39
ref|YP_002519761.1| ribosomal protein S18 [Gnetum parvifolium] g... 125 3e-26
ref|YP_002519974.1| ribosomal protein L33 (chloroplast) [Ephedra... 122 3e-25
ref|YP_001876598.1| ribosomal protein S18 [Welwitschia mirabilis... 109 1e-21
ref|YP_002519973.1| photosystem I subunit IX (chloroplast) [Ephe... 91 7e-16
ref|YP_001876597.1| ribosomal protein L33 [Welwitschia mirabilis... 86 3e-14
ref|YP_003934319.1| ribosomal protein S18 [Monsonia speciosa] gi... 82 3e-13
gb|ACH47294.1| ribosomal protein S18 [Monsonia speciosa] 81 7e-13
gb|AEZ48812.1| ribosomal protein S18, partial [Iris virginica] 80 2e-12
gb|AER45522.1| rps18 (chloroplast) [Agathis australis] 79 2e-12
gb|AEX94636.1| ribosomal protein S18 (chloroplast) [Iris tenax] 78 5e-12
ref|YP_002519762.1| ribosomal protein L33 [Gnetum parvifolium] g... 78 5e-12
ref|YP_008758208.1| photosystem I reaction center subunit IX (ch... 78 6e-12
ref|YP_008965133.1| ribosomal protein S18 (chloroplast) [Nageia ... 77 8e-12
gb|AGE93392.1| ribosomal protein S18 [Alpinia zerumbet] 77 8e-12
gb|AFM54187.1| PsaJ (chloroplast) [Zamia furfuracea] 77 8e-12
gb|AGW04688.1| ribosomal protein S18 [Matelea biflora] 77 1e-11
dbj|BAN16897.1| ribosomal protein L33 (chloroplast) [Gnetum ula] 77 1e-11
ref|YP_008854616.1| ribosomal protein S18 [Curcuma roscoeana] gi... 77 1e-11
gb|AFU95207.1| Rps18, partial (chloroplast) [Rhizophora mangle] 77 1e-11
>ref|YP_002519975.1| ribosomal protein S18 (chloroplast) [Ephedra equisetina]
gi|220983576|dbj|BAH11343.1| ribosomal protein S18
(chloroplast) [Ephedra equisetina]
Length = 97
Score = 168 bits (425), Expect = 3e-39
Identities = 84/84 (100%), Positives = 84/84 (100%)
Frame = +2
Query: 623 MSKQSFDFKRYKPEIPSGSRKRYPKVPKKPNLIKSENQINYKNMSLINQFISQRGKILSR 802
MSKQSFDFKRYKPEIPSGSRKRYPKVPKKPNLIKSENQINYKNMSLINQFISQRGKILSR
Sbjct: 1 MSKQSFDFKRYKPEIPSGSRKRYPKVPKKPNLIKSENQINYKNMSLINQFISQRGKILSR 60
Query: 803 KVNNLTCKQQRLISIAIKRARILG 874
KVNNLTCKQQRLISIAIKRARILG
Sbjct: 61 KVNNLTCKQQRLISIAIKRARILG 84
>ref|YP_002519761.1| ribosomal protein S18 [Gnetum parvifolium]
gi|512721596|ref|YP_008082216.1| ribosomal protein S18
(chloroplast) [Gnetum montanum]
gi|205831391|sp|A6BM60.1|RR18_GNEPA RecName: Full=30S
ribosomal protein S18, chloroplastic
gi|149941476|dbj|BAF64905.1| ribosomal protein S18
[Gnetum parvifolium] gi|220983504|dbj|BAH11272.1|
ribosomal protein S18 (chloroplast) [Gnetum parvifolium]
gi|490345041|gb|AGL11061.1| ribosomal protein S18
(chloroplast) [Gnetum montanum]
Length = 98
Score = 125 bits (313), Expect = 3e-26
Identities = 67/83 (80%), Positives = 71/83 (85%)
Frame = +2
Query: 623 MSKQSFDFKRYKPEIPSGSRKRYPKVPKKPNLIKSENQINYKNMSLINQFISQRGKILSR 802
MSKQSFDFKRYKPE PSGSRKR K KKP IKSE+QINYKN+SLIN FISQR KILSR
Sbjct: 1 MSKQSFDFKRYKPEAPSGSRKRPLKKFKKPIRIKSEDQINYKNVSLINGFISQRAKILSR 60
Query: 803 KVNNLTCKQQRLISIAIKRARIL 871
KV LT KQQRL+S+AIKRARIL
Sbjct: 61 KVTKLTWKQQRLMSVAIKRARIL 83
>ref|YP_002519974.1| ribosomal protein L33 (chloroplast) [Ephedra equisetina]
gi|220983575|dbj|BAH11342.1| ribosomal protein L33
(chloroplast) [Ephedra equisetina]
Length = 56
Score = 122 bits (305), Expect = 3e-25
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = +1
Query: 382 MSENIGARVVIFLECINCNLFRYTTKKNRYNTSMPLALKKFCPFCLKHTIHKERKK 549
MSENIGARVVIFLECINCNLFRYTTKKNRYNTSMPLALKKFCPFCLKHTIHKERKK
Sbjct: 1 MSENIGARVVIFLECINCNLFRYTTKKNRYNTSMPLALKKFCPFCLKHTIHKERKK 56
>ref|YP_001876598.1| ribosomal protein S18 [Welwitschia mirabilis]
gi|163311653|gb|ABY26811.1| ribosomal protein S18
[Welwitschia mirabilis] gi|220983438|dbj|BAH11207.1|
ribosomal protein S18 (chloroplast) [Welwitschia
mirabilis]
Length = 192
Score = 109 bits (273), Expect = 1e-21
Identities = 56/82 (68%), Positives = 70/82 (85%), Gaps = 1/82 (1%)
Frame = +2
Query: 629 KQSFDFKRYKPEIPSGSRKRYP-KVPKKPNLIKSENQINYKNMSLINQFISQRGKILSRK 805
++ F FKR+KP P+ SRKR P K+ KKP IKSE+QINYKN++LIN++ISQ+GKILSRK
Sbjct: 64 RKPFHFKRFKPPRPTSSRKRRPRKISKKPIQIKSEDQINYKNVNLINRYISQQGKILSRK 123
Query: 806 VNNLTCKQQRLISIAIKRARIL 871
VN LT KQQRL+++AIKRARIL
Sbjct: 124 VNKLTWKQQRLMAVAIKRARIL 145
>ref|YP_002519973.1| photosystem I subunit IX (chloroplast) [Ephedra equisetina]
gi|220983574|dbj|BAH11341.1| photosystem I subunit IX
(chloroplast) [Ephedra equisetina]
Length = 43
Score = 90.9 bits (224), Expect = 7e-16
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = +1
Query: 139 MQYIKKYLSTAPVLATLWFGSLAGFLIEINRFFPDALSFPFSF 267
MQYIKKYLSTAPVLATLWFGSLAGFLIEINRFFPDALSFPFSF
Sbjct: 1 MQYIKKYLSTAPVLATLWFGSLAGFLIEINRFFPDALSFPFSF 43
>ref|YP_001876597.1| ribosomal protein L33 [Welwitschia mirabilis]
gi|218546910|sp|B2Y1Y0.1|RK33_WELMI RecName: Full=50S
ribosomal protein L33, chloroplastic
gi|163311652|gb|ABY26810.1| ribosomal protein L33
[Welwitschia mirabilis] gi|220983439|dbj|BAH11208.1|
ribosomal protein L33 (chloroplast) [Welwitschia
mirabilis]
Length = 66
Score = 85.5 bits (210), Expect = 3e-14
Identities = 41/66 (62%), Positives = 45/66 (68%), Gaps = 10/66 (15%)
Frame = +1
Query: 382 MSENIGARVVIFLECINCN----------LFRYTTKKNRYNTSMPLALKKFCPFCLKHTI 531
M G RVV+FLEC +C +FRY TKKNR+N S PL LKKFCPFCLKHTI
Sbjct: 1 MPAKTGPRVVVFLECFHCTQKGAQKKFPGVFRYITKKNRHNKSTPLELKKFCPFCLKHTI 60
Query: 532 HKERKK 549
HKERKK
Sbjct: 61 HKERKK 66
>ref|YP_003934319.1| ribosomal protein S18 [Monsonia speciosa]
gi|300069334|gb|ADJ66454.1| ribosomal protein S18
[Monsonia speciosa]
Length = 174
Score = 82.0 bits (201), Expect = 3e-13
Identities = 43/83 (51%), Positives = 60/83 (72%)
Frame = +2
Query: 623 MSKQSFDFKRYKPEIPSGSRKRYPKVPKKPNLIKSENQINYKNMSLINQFISQRGKILSR 802
M + + K+YK + R+R ++P + E++INY+N+SLI+QFISQ GKILSR
Sbjct: 1 MKYKKYKKKKYKRKSKRSFRRRLSRIP-----MHQEDKINYRNISLISQFISQEGKILSR 55
Query: 803 KVNNLTCKQQRLISIAIKRARIL 871
KVN +T KQQRL++IAIK+ARIL
Sbjct: 56 KVNRVTLKQQRLLTIAIKQARIL 78
>gb|ACH47294.1| ribosomal protein S18 [Monsonia speciosa]
Length = 174
Score = 80.9 bits (198), Expect = 7e-13
Identities = 42/75 (56%), Positives = 57/75 (76%)
Frame = +2
Query: 647 KRYKPEIPSGSRKRYPKVPKKPNLIKSENQINYKNMSLINQFISQRGKILSRKVNNLTCK 826
K+YK + R+R ++P + E++INY+N+SLI+QFISQ GKILSRKVN +T K
Sbjct: 9 KKYKRKSKRSFRRRLSRIP-----MHQEDKINYRNISLISQFISQEGKILSRKVNRVTLK 63
Query: 827 QQRLISIAIKRARIL 871
QQRL++IAIK+ARIL
Sbjct: 64 QQRLLTIAIKQARIL 78
>gb|AEZ48812.1| ribosomal protein S18, partial [Iris virginica]
Length = 99
Score = 79.7 bits (195), Expect = 2e-12
Identities = 46/83 (55%), Positives = 60/83 (72%)
Frame = +2
Query: 623 MSKQSFDFKRYKPEIPSGSRKRYPKVPKKPNLIKSENQINYKNMSLINQFISQRGKILSR 802
M K F++ K SR+RYP I+S +QI+Y+NMSLI++FIS++GKILSR
Sbjct: 1 MDKSKQPFRKSK----RSSRRRYPP-------IESGDQIDYRNMSLISRFISEQGKILSR 49
Query: 803 KVNNLTCKQQRLISIAIKRARIL 871
+VN LT KQQRLI+IAIK+ARIL
Sbjct: 50 RVNKLTLKQQRLITIAIKQARIL 72
>gb|AER45522.1| rps18 (chloroplast) [Agathis australis]
Length = 115
Score = 79.3 bits (194), Expect = 2e-12
Identities = 46/84 (54%), Positives = 61/84 (72%)
Frame = +2
Query: 620 NMSKQSFDFKRYKPEIPSGSRKRYPKVPKKPNLIKSENQINYKNMSLINQFISQRGKILS 799
N SK+SF K + R + ++P+ I S ++I+YKNMSLI++FIS+RGKILS
Sbjct: 26 NRSKRSFRNKMKRSFRNKSKRIFHKRLPR----IGSGDRIDYKNMSLISRFISERGKILS 81
Query: 800 RKVNNLTCKQQRLISIAIKRARIL 871
R+VN LT KQQRL++IAIKRARIL
Sbjct: 82 RRVNRLTSKQQRLMTIAIKRARIL 105
>gb|AEX94636.1| ribosomal protein S18 (chloroplast) [Iris tenax]
Length = 101
Score = 78.2 bits (191), Expect = 5e-12
Identities = 45/83 (54%), Positives = 60/83 (72%)
Frame = +2
Query: 623 MSKQSFDFKRYKPEIPSGSRKRYPKVPKKPNLIKSENQINYKNMSLINQFISQRGKILSR 802
M K F++ K SR+RYP I+S ++I+Y+NMSLI++FIS++GKILSR
Sbjct: 1 MDKSKQPFRKSK----RSSRRRYPP-------IESGDRIDYRNMSLISRFISEQGKILSR 49
Query: 803 KVNNLTCKQQRLISIAIKRARIL 871
+VN LT KQQRLI+IAIK+ARIL
Sbjct: 50 RVNKLTLKQQRLITIAIKQARIL 72
>ref|YP_002519762.1| ribosomal protein L33 [Gnetum parvifolium]
gi|512721595|ref|YP_008082215.1| ribosomal protein L33
(chloroplast) [Gnetum montanum]
gi|218546853|sp|A6BM47.1|RK33_GNEPA RecName: Full=50S
ribosomal protein L33, chloroplastic
gi|149941450|dbj|BAF64892.1| ribosomal protein L33
[Gnetum parvifolium] gi|220983505|dbj|BAH11273.1|
ribosomal protein L33 (chloroplast) [Gnetum parvifolium]
gi|490345040|gb|AGL11060.1| ribosomal protein L33
(chloroplast) [Gnetum montanum]
Length = 66
Score = 78.2 bits (191), Expect = 5e-12
Identities = 38/66 (57%), Positives = 42/66 (63%), Gaps = 10/66 (15%)
Frame = +1
Query: 382 MSENIGARVVIFLECINCN----------LFRYTTKKNRYNTSMPLALKKFCPFCLKHTI 531
M GARVV+FLEC C +FRY T+KNR N PL LKKFCPFCLKHT+
Sbjct: 1 MPAKAGARVVVFLECFACTQEGVQKRFPGVFRYITQKNRQNKPTPLELKKFCPFCLKHTV 60
Query: 532 HKERKK 549
HKE KK
Sbjct: 61 HKEIKK 66
>ref|YP_008758208.1| photosystem I reaction center subunit IX (chloroplast) [Veratrum
patulum] gi|549531737|gb|AGX28863.1| photosystem I
reaction center subunit IX (chloroplast) [Veratrum
patulum]
Length = 42
Score = 77.8 bits (190), Expect = 6e-12
Identities = 36/41 (87%), Positives = 37/41 (90%)
Frame = +1
Query: 139 MQYIKKYLSTAPVLATLWFGSLAGFLIEINRFFPDALSFPF 261
MQY+K YLSTAPVL TLWFGSLAG LIEINR FPDALSFPF
Sbjct: 1 MQYLKTYLSTAPVLTTLWFGSLAGLLIEINRLFPDALSFPF 41
>ref|YP_008965133.1| ribosomal protein S18 (chloroplast) [Nageia nagi]
gi|563317718|dbj|BAO19817.1| ribosomal protein S18
(chloroplast) [Nageia nagi]
Length = 107
Score = 77.4 bits (189), Expect = 8e-12
Identities = 44/84 (52%), Positives = 59/84 (70%)
Frame = +2
Query: 620 NMSKQSFDFKRYKPEIPSGSRKRYPKVPKKPNLIKSENQINYKNMSLINQFISQRGKILS 799
N K+SF K + R + ++P+ I S ++I+YKNMSLI++FIS+RGKILS
Sbjct: 18 NKYKRSFRNKSRRSSRKKSKRTFHKRLPR----IGSGDRIDYKNMSLISRFISERGKILS 73
Query: 800 RKVNNLTCKQQRLISIAIKRARIL 871
R+VN LT KQQRL++ AIKRARIL
Sbjct: 74 RRVNRLTSKQQRLMTTAIKRARIL 97
>gb|AGE93392.1| ribosomal protein S18 [Alpinia zerumbet]
Length = 117
Score = 77.4 bits (189), Expect = 8e-12
Identities = 42/83 (50%), Positives = 59/83 (71%)
Frame = +2
Query: 623 MSKQSFDFKRYKPEIPSGSRKRYPKVPKKPNLIKSENQINYKNMSLINQFISQRGKILSR 802
M K F++ K R ++P+ I+S ++I+Y+NMSLI++FIS++GKILSR
Sbjct: 1 MDKSKQSFRKSKQSFRKSKRSFRRRLPQ----IRSGDRIDYRNMSLISRFISEQGKILSR 56
Query: 803 KVNNLTCKQQRLISIAIKRARIL 871
+VN LT KQQRLI+IAIK+ARIL
Sbjct: 57 RVNRLTLKQQRLITIAIKQARIL 79
>gb|AFM54187.1| PsaJ (chloroplast) [Zamia furfuracea]
Length = 44
Score = 77.4 bits (189), Expect = 8e-12
Identities = 37/41 (90%), Positives = 38/41 (92%)
Frame = +1
Query: 139 MQYIKKYLSTAPVLATLWFGSLAGFLIEINRFFPDALSFPF 261
MQ IK YLSTAPVLATLWFGSLAG LIEINRFFPDAL+FPF
Sbjct: 1 MQDIKTYLSTAPVLATLWFGSLAGLLIEINRFFPDALTFPF 41
>gb|AGW04688.1| ribosomal protein S18 [Matelea biflora]
Length = 108
Score = 77.0 bits (188), Expect = 1e-11
Identities = 43/75 (57%), Positives = 57/75 (76%)
Frame = +2
Query: 647 KRYKPEIPSGSRKRYPKVPKKPNLIKSENQINYKNMSLINQFISQRGKILSRKVNNLTCK 826
KR P+ SR+R P I+S ++I+Y+NMSLI++FIS++GKILSR+VN LT K
Sbjct: 5 KRPLPKSKRSSRRRSPP-------IQSGDRIDYRNMSLISRFISEQGKILSRRVNRLTLK 57
Query: 827 QQRLISIAIKRARIL 871
QQRLI+IAIK+ARIL
Sbjct: 58 QQRLITIAIKQARIL 72
>dbj|BAN16897.1| ribosomal protein L33 (chloroplast) [Gnetum ula]
Length = 66
Score = 77.0 bits (188), Expect = 1e-11
Identities = 37/66 (56%), Positives = 42/66 (63%), Gaps = 10/66 (15%)
Frame = +1
Query: 382 MSENIGARVVIFLECINCN----------LFRYTTKKNRYNTSMPLALKKFCPFCLKHTI 531
M GARVV+FLEC C +FRY T+KNR N PL LKKFCPFCLKHT+
Sbjct: 1 MPAKAGARVVVFLECFVCTQEGVQKRFPGVFRYITQKNRQNKPTPLELKKFCPFCLKHTV 60
Query: 532 HKERKK 549
H+ER K
Sbjct: 61 HQERTK 66
>ref|YP_008854616.1| ribosomal protein S18 [Curcuma roscoeana]
gi|557637523|gb|AHA13118.1| ribosomal protein S18
[Curcuma roscoeana]
Length = 111
Score = 76.6 bits (187), Expect = 1e-11
Identities = 42/83 (50%), Positives = 58/83 (69%)
Frame = +2
Query: 623 MSKQSFDFKRYKPEIPSGSRKRYPKVPKKPNLIKSENQINYKNMSLINQFISQRGKILSR 802
M K F++ K R ++P I+S ++I+Y+NMSLI++FIS++GKILSR
Sbjct: 1 MDKSKQSFRKSKQSFRKSKRSFRRRLPP----IRSGDRIDYRNMSLISRFISEQGKILSR 56
Query: 803 KVNNLTCKQQRLISIAIKRARIL 871
+VN LT KQQRLI+IAIK+ARIL
Sbjct: 57 RVNRLTLKQQRLITIAIKQARIL 79
>gb|AFU95207.1| Rps18, partial (chloroplast) [Rhizophora mangle]
Length = 103
Score = 76.6 bits (187), Expect = 1e-11
Identities = 38/51 (74%), Positives = 48/51 (94%)
Frame = +2
Query: 719 IKSENQINYKNMSLINQFISQRGKILSRKVNNLTCKQQRLISIAIKRARIL 871
I+S N+INY+NMSLI++FIS++GKILSR+VN LT KQQRLI+IAIK+ARIL
Sbjct: 46 IQSGNRINYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARIL 96