BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00020401
         (718 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_001751645.1| predicted protein [Physcomitrella patens] gi...   144   3e-32
ref|XP_002305144.1| transcription factor-related family protein ...   140   3e-31
ref|XP_004505045.1| PREDICTED: general transcription factor IIH ...   137   3e-30
ref|XP_006467817.1| PREDICTED: general transcription factor IIH ...   137   5e-30
gb|ESW31311.1| hypothetical protein PHAVU_002G227900g [Phaseolus...   137   5e-30
ref|XP_003637396.1| General transcription factor IIH subunit [Me...   135   1e-29
ref|XP_002984780.1| hypothetical protein SELMODRAFT_121159 [Sela...   134   2e-29
gb|EOY28282.1| Transcription factor-related isoform 4 [Theobroma...   134   3e-29
gb|EOY28281.1| Transcription factor-related isoform 3 [Theobroma...   134   3e-29
gb|EOY28280.1| Transcription factor-related isoform 2 [Theobroma...   134   3e-29
gb|EOY28279.1| Transcription factor-related isoform 1 [Theobroma...   134   3e-29
ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus commun...   134   4e-29
ref|XP_003601071.1| General transcription factor IIH subunit [Me...   133   5e-29
ref|XP_006285003.1| hypothetical protein CARUB_v10006310mg [Caps...   132   1e-28
ref|XP_003542754.1| PREDICTED: general transcription factor IIH ...   132   1e-28
emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]   132   1e-28
gb|EMJ15015.1| hypothetical protein PRUPE_ppa005553mg [Prunus pe...   131   2e-28
ref|XP_004232855.1| PREDICTED: general transcription factor IIH ...   131   2e-28
ref|XP_006347058.1| PREDICTED: general transcription factor IIH ...   130   4e-28
ref|NP_974564.1| transcription factor-related protein [Arabidops...   129   9e-28

>ref|XP_001751645.1| predicted protein [Physcomitrella patens]
           gi|162697626|gb|EDQ83962.1| predicted protein
           [Physcomitrella patens]
          Length = 462

 Score =  144 bits (363), Expect = 3e-32
 Identities = 81/224 (36%), Positives = 132/224 (58%), Gaps = 10/224 (4%)
 Frame = +1

Query: 76  LNQKFQNQMRKAIEKGFKPPNNFMSSRL--NLPTAEDLEKYTWNKWQDVLQVLVN----P 237
           +N K Q Q+R+A+  G  PP + +S  +   +P + DLE Y   +W+ VL  LV+     
Sbjct: 103 MNPKLQKQLRQALSTGGGPPRDVVSESVAARVPNSADLENYAMKQWESVLLQLVDCAADG 162

Query: 238 DTSTKETLVFKIFSETKLLSSAGSSLDITASGLNFLLMDMECQMWFVLREYIYKTQE--A 411
               K   + K+F  + LL+    S  +T  G  FLLMD   Q+W ++REY+  +++   
Sbjct: 163 PAGPKNPFIIKVFQRSGLLTPENESPSLTDLGFQFLLMDTNSQLWQLVREYVTSSEDRGT 222

Query: 412 KRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTLSSFGLVKFQ--INENYFIPTELS 585
              +L+ FL+ELGF++VG+ YS+  L  + ++V+  L++ GLVK Q  + E+++IPT+L+
Sbjct: 223 DSGELVGFLLELGFHLVGEAYSVNSLSPALQKVLDELAALGLVKLQQGMKESWYIPTKLA 282

Query: 586 SILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQKCILNLF 717
           S L++ +S   +    +G++VVE N KVYAYT S +Q  IL  F
Sbjct: 283 SNLSASLSESTDWQSSEGFVVVETNFKVYAYTSSKLQTEILRCF 326


>ref|XP_002305144.1| transcription factor-related family protein [Populus trichocarpa]
           gi|222848108|gb|EEE85655.1| transcription factor-related
           family protein [Populus trichocarpa]
          Length = 449

 Score =  140 bits (354), Expect = 3e-31
 Identities = 87/247 (35%), Positives = 140/247 (56%), Gaps = 8/247 (3%)
 Frame = +1

Query: 1   DTLVHSLLEVKVLQKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSRLNLPTAED 180
           D L+   + ++V  K  E      KLNQ FQ  +RK +  G   P   M++ + LP+ E+
Sbjct: 80  DRLIQLRIFIEVSDKKRESSY---KLNQTFQANLRKHLTNGGVLPRETMAAVVKLPSLEE 136

Query: 181 LEKYTWNKWQDVLQVLVNPDTSTKET----LVFKIFSETKLLSSAGSSLDITASGLNFLL 348
           L+ Y   +W+  L +L++   + K T     + KIF    L      +  +T  G  FLL
Sbjct: 137 LDTYALEQWECFLLLLISSGQAEKPTSLSSSMMKIFQRGLLSQRDRDAPRLTEGGFQFLL 196

Query: 349 MDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTL 522
           MD   Q+W+++REYI  ++E   +  DLISFL+EL F++ G+ Y++  L   ++  +K L
Sbjct: 197 MDTNAQLWYIIREYITNSEERGTEPADLISFLLELSFHVTGEAYNMNTLTEIQRNTIKDL 256

Query: 523 SSFGLVKFQ--INENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQ 696
           +  GLVK Q    E++FIPT+L++ L+  +SL  ++ + QGY+VVE N ++YAY+ S + 
Sbjct: 257 AELGLVKLQQGRKESWFIPTKLATNLS--VSLTDSSSRKQGYVVVETNFRLYAYSSSKLH 314

Query: 697 KCILNLF 717
             IL LF
Sbjct: 315 CEILRLF 321


>ref|XP_004505045.1| PREDICTED: general transcription factor IIH subunit 4-like [Cicer
           arietinum]
          Length = 451

 Score =  137 bits (345), Expect = 3e-30
 Identities = 89/253 (35%), Positives = 141/253 (55%), Gaps = 14/253 (5%)
 Frame = +1

Query: 1   DTLVHSLLEVKVL----QKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSRLN-- 162
           D LV   + V+ L    +KTY       K+N  +Q  ++K +  G   P   M S +   
Sbjct: 80  DRLVQLRVFVEALDRKNEKTY-------KVNSTYQRSLQKLLVHGGTLPRESMPSNITVR 132

Query: 163 LPTAEDLEKYTWNKWQDVLQVLVNPDTSTK----ETLVFKIFSETKLLSSAGSSLDITAS 330
           LPT EDLE Y   +W+  L  L++P    K     + + K+F    L      +  +T S
Sbjct: 133 LPTLEDLETYALEQWECFLLQLISPSHVEKTLNISSSLMKVFQRRLLSQRDKEAPKLTES 192

Query: 331 GLNFLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRK 504
           G  FLLMD   Q+W+++REYI  ++E      DLISF++EL F+++G+ Y+I  L   ++
Sbjct: 193 GFQFLLMDTNAQLWYIIREYISNSEERGVDAGDLISFMLELSFHVIGEAYNINTLTDFQR 252

Query: 505 EVVKTLSSFGLVKFQ--INENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAY 678
            ++K L+  GLVK Q    E++FIPT+L++ L+  +SL  ++ + +G++VVE N +VYAY
Sbjct: 253 NIIKDLADLGLVKLQQGRKESWFIPTKLATNLS--VSLTESSSRKEGFVVVETNFRVYAY 310

Query: 679 TPSPVQKCILNLF 717
           + S +   IL LF
Sbjct: 311 STSKLHCEILRLF 323


>ref|XP_006467817.1| PREDICTED: general transcription factor IIH subunit 4-like [Citrus
           sinensis]
          Length = 450

 Score =  137 bits (344), Expect = 5e-30
 Identities = 85/225 (37%), Positives = 130/225 (57%), Gaps = 10/225 (4%)
 Frame = +1

Query: 73  KLNQKFQNQMRKAIEKGFKPPNNFMSSRLN--LPTAEDLEKYTWNKWQDVLQVLVNPDTS 246
           +LN  FQ+ +RK +  G   P   M S +   LPT EDLE Y   +W+  L  L++   +
Sbjct: 99  RLNSTFQSNLRKHLIYGGALPREPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSTQA 158

Query: 247 TKET----LVFKIFSETKLLSSAGSSLDITASGLNFLLMDMECQMWFVLREYIYKTQEA- 411
            + T     + K+F    L      +  +T SG  FLLMD   Q+W+++REYI  +QE  
Sbjct: 159 ERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERG 218

Query: 412 -KRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTLSSFGLVKFQ--INENYFIPTEL 582
             + DLISFL+EL F++ G+ Y++  L   +K ++K  +  GLVK Q    EN+FIPT+L
Sbjct: 219 INQADLISFLLELSFHVAGEAYNLNTLSEIQKSMIKDFADLGLVKLQQGRKENWFIPTKL 278

Query: 583 SSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQKCILNLF 717
           ++ L+  MSL  ++ + +G+IVVE N ++YAY+ S +   IL LF
Sbjct: 279 ATNLS--MSLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLF 321


>gb|ESW31311.1| hypothetical protein PHAVU_002G227900g [Phaseolus vulgaris]
          Length = 451

 Score =  137 bits (344), Expect = 5e-30
 Identities = 84/236 (35%), Positives = 134/236 (56%), Gaps = 10/236 (4%)
 Frame = +1

Query: 40  QKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSRLN--LPTAEDLEKYTWNKWQD 213
           +KTY       K+N  +Q  ++K + +G   P   M S +   LPT E+LE Y   +W+ 
Sbjct: 97  EKTY-------KVNPTYQRSLQKLLVQGGTLPRESMPSNITVRLPTLENLEAYALEQWEW 149

Query: 214 VLQVLVNPDTSTK----ETLVFKIFSETKLLSSAGSSLDITASGLNFLLMDMECQMWFVL 381
            L  L++P  + K     + + K+F    L      +  +T SG  FLLMD   Q+W+++
Sbjct: 150 FLLQLISPAQADKPLNISSSLMKVFQRRLLSQRDKEAPKLTESGFQFLLMDTNAQLWYII 209

Query: 382 REYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTLSSFGLVKFQIN 555
           REYI  ++E      DLISF++EL F+++G+ YSI  L   ++ ++  L+  GLVK Q  
Sbjct: 210 REYISNSEERGVDAADLISFMLELSFHVIGEAYSISTLTDFQRSIINDLADLGLVKLQQG 269

Query: 556 E--NYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQKCILNLF 717
              ++FIPT+L++ L+  MSL  ++ + QG++VVE N +VYAY+ S +   IL LF
Sbjct: 270 RKGSWFIPTKLATNLS--MSLADSSSRKQGFVVVETNFRVYAYSTSKLHCEILRLF 323


>ref|XP_003637396.1| General transcription factor IIH subunit [Medicago truncatula]
           gi|355503331|gb|AES84534.1| General transcription factor
           IIH subunit [Medicago truncatula]
          Length = 451

 Score =  135 bits (341), Expect = 1e-29
 Identities = 80/225 (35%), Positives = 130/225 (57%), Gaps = 10/225 (4%)
 Frame = +1

Query: 73  KLNQKFQNQMRKAIEKGFKPPNNFMSSRLN--LPTAEDLEKYTWNKWQDVLQVLVNPDTS 246
           K+N  +Q  ++K +  G   P   M S +   LPT EDLE Y   +W+  L  L++P   
Sbjct: 101 KVNPTYQRSLQKLLVHGGTLPRESMPSNITVRLPTLEDLETYALEQWECFLLQLISPSHV 160

Query: 247 TK----ETLVFKIFSETKLLSSAGSSLDITASGLNFLLMDMECQMWFVLREYIYKTQE-- 408
            K     + + K+F    L      +  +T SG  FLLMD   Q+W+++REYI  ++E  
Sbjct: 161 DKTLNISSSLMKVFQRRLLSQRDREAPKLTESGFQFLLMDTNAQLWYIIREYITNSEERG 220

Query: 409 AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTLSSFGLVKFQ--INENYFIPTEL 582
               DLISF++EL F+++G+ Y+I  L   ++ ++K L+  GLVK Q    E++FIPT+L
Sbjct: 221 VDAGDLISFMLELSFHVIGEAYNINTLTEFQRNIIKDLADLGLVKLQQGRKESWFIPTKL 280

Query: 583 SSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQKCILNLF 717
           ++ L+  +S+  ++ + +G++VVE N +VYAY+ S +   IL LF
Sbjct: 281 ATNLS--VSMTESSSRKEGFVVVETNFRVYAYSTSKLHCEILRLF 323


>ref|XP_002984780.1| hypothetical protein SELMODRAFT_121159 [Selaginella moellendorffii]
           gi|302808297|ref|XP_002985843.1| hypothetical protein
           SELMODRAFT_123271 [Selaginella moellendorffii]
           gi|300146350|gb|EFJ13020.1| hypothetical protein
           SELMODRAFT_123271 [Selaginella moellendorffii]
           gi|300147366|gb|EFJ14030.1| hypothetical protein
           SELMODRAFT_121159 [Selaginella moellendorffii]
          Length = 459

 Score =  134 bits (338), Expect = 2e-29
 Identities = 87/245 (35%), Positives = 144/245 (58%), Gaps = 12/245 (4%)
 Frame = +1

Query: 19  LLEVKVLQKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSRL--NLPTAEDLEKY 192
           L E K+L +  E      ++N KFQ Q+R A+  G   P + +   +   +P+A++L+ Y
Sbjct: 90  LPEEKILSRKKE---THYRVNPKFQEQLRLALSTGLGTPRDPLPPDIAVRMPSAKELDDY 146

Query: 193 TWNKWQDVLQVLVN---PDTSTKET--LVFKIFSETKLLSSAGSSLDITASGLNFLLMDM 357
              KW+     LVN   PD  +  T   + ++F +  LL+S G    IT +G  FLL+D 
Sbjct: 147 ATEKWEAWFSSLVNFASPDGPSASTNGFIVQLFQKADLLTS-GQDPKITPAGFQFLLLDR 205

Query: 358 ECQMWFVLREYIYKTQEAKRVD---LISFLIELGFYIVGKPYSILDLPVSRKEVVKTLSS 528
             Q+W V+REY+ +  EA+++D   LI FL+E+GFY VG+PYS+  LP S++   + L+ 
Sbjct: 206 NSQLWRVIREYV-QYAEARQIDTGELIRFLLEIGFYSVGEPYSMDSLPNSQRNFAEELAM 264

Query: 529 FGLVKFQ--INENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQKC 702
            G+++ Q  + + +FIPT L++ L++ +S   +  Q +G+I+VE N +VYAYT S +   
Sbjct: 265 LGVLQLQKGMKDRWFIPTRLATGLSASLS-ESSAWQTEGFIMVETNFRVYAYTSSKLHIE 323

Query: 703 ILNLF 717
            L++F
Sbjct: 324 TLHVF 328


>gb|EOY28282.1| Transcription factor-related isoform 4 [Theobroma cacao]
          Length = 445

 Score =  134 bits (337), Expect = 3e-29
 Identities = 83/246 (33%), Positives = 140/246 (56%), Gaps = 10/246 (4%)
 Frame = +1

Query: 10  VHSLLEVKVLQKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSRLN--LPTAEDL 183
           +  L+++++L+     +    KLN  FQ  +RK +  G   P   M S +   LPT+E+L
Sbjct: 79  IDRLIQLRILEVIDRKKETSYKLNPTFQTNLRKHLIYGGILPREPMPSNVTVRLPTSEEL 138

Query: 184 EKYTWNKWQDVLQVLVNPDTSTKET----LVFKIFSETKLLSSAGSSLDITASGLNFLLM 351
           + Y   +W+  L  L++   + K T     + +IF    L      +  +T SG  FLLM
Sbjct: 139 DAYAHEQWECFLLQLISSGQAEKPTNFSSSMMRIFQRGLLCQREKEAPRLTESGFQFLLM 198

Query: 352 DMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTLS 525
           D   Q+W+++REYI  ++E    + DLI+FL+EL F+  G+ Y++  L   ++ ++K LS
Sbjct: 199 DTNAQLWYIIREYISNSEEQGVDQADLIAFLLELSFHTTGEAYNMNTLTDDQRAMIKDLS 258

Query: 526 SFGLVKFQ--INENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQK 699
             GLVK Q    +++FIPT+L++ L+  +SL  ++ + QG++VVE N ++YAY+ S +  
Sbjct: 259 DLGLVKLQQGRKDSWFIPTKLATNLS--VSLTDSSSRKQGFVVVETNFRMYAYSSSKLHC 316

Query: 700 CILNLF 717
            IL LF
Sbjct: 317 EILRLF 322


>gb|EOY28281.1| Transcription factor-related isoform 3 [Theobroma cacao]
          Length = 406

 Score =  134 bits (337), Expect = 3e-29
 Identities = 83/246 (33%), Positives = 140/246 (56%), Gaps = 10/246 (4%)
 Frame = +1

Query: 10  VHSLLEVKVLQKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSRLN--LPTAEDL 183
           +  L+++++L+     +    KLN  FQ  +RK +  G   P   M S +   LPT+E+L
Sbjct: 40  IDRLIQLRILEVIDRKKETSYKLNPTFQTNLRKHLIYGGILPREPMPSNVTVRLPTSEEL 99

Query: 184 EKYTWNKWQDVLQVLVNPDTSTKET----LVFKIFSETKLLSSAGSSLDITASGLNFLLM 351
           + Y   +W+  L  L++   + K T     + +IF    L      +  +T SG  FLLM
Sbjct: 100 DAYAHEQWECFLLQLISSGQAEKPTNFSSSMMRIFQRGLLCQREKEAPRLTESGFQFLLM 159

Query: 352 DMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTLS 525
           D   Q+W+++REYI  ++E    + DLI+FL+EL F+  G+ Y++  L   ++ ++K LS
Sbjct: 160 DTNAQLWYIIREYISNSEEQGVDQADLIAFLLELSFHTTGEAYNMNTLTDDQRAMIKDLS 219

Query: 526 SFGLVKFQ--INENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQK 699
             GLVK Q    +++FIPT+L++ L+  +SL  ++ + QG++VVE N ++YAY+ S +  
Sbjct: 220 DLGLVKLQQGRKDSWFIPTKLATNLS--VSLTDSSSRKQGFVVVETNFRMYAYSSSKLHC 277

Query: 700 CILNLF 717
            IL LF
Sbjct: 278 EILRLF 283


>gb|EOY28280.1| Transcription factor-related isoform 2 [Theobroma cacao]
          Length = 412

 Score =  134 bits (337), Expect = 3e-29
 Identities = 83/246 (33%), Positives = 140/246 (56%), Gaps = 10/246 (4%)
 Frame = +1

Query: 10  VHSLLEVKVLQKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSRLN--LPTAEDL 183
           +  L+++++L+     +    KLN  FQ  +RK +  G   P   M S +   LPT+E+L
Sbjct: 40  IDRLIQLRILEVIDRKKETSYKLNPTFQTNLRKHLIYGGILPREPMPSNVTVRLPTSEEL 99

Query: 184 EKYTWNKWQDVLQVLVNPDTSTKET----LVFKIFSETKLLSSAGSSLDITASGLNFLLM 351
           + Y   +W+  L  L++   + K T     + +IF    L      +  +T SG  FLLM
Sbjct: 100 DAYAHEQWECFLLQLISSGQAEKPTNFSSSMMRIFQRGLLCQREKEAPRLTESGFQFLLM 159

Query: 352 DMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTLS 525
           D   Q+W+++REYI  ++E    + DLI+FL+EL F+  G+ Y++  L   ++ ++K LS
Sbjct: 160 DTNAQLWYIIREYISNSEEQGVDQADLIAFLLELSFHTTGEAYNMNTLTDDQRAMIKDLS 219

Query: 526 SFGLVKFQ--INENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQK 699
             GLVK Q    +++FIPT+L++ L+  +SL  ++ + QG++VVE N ++YAY+ S +  
Sbjct: 220 DLGLVKLQQGRKDSWFIPTKLATNLS--VSLTDSSSRKQGFVVVETNFRMYAYSSSKLHC 277

Query: 700 CILNLF 717
            IL LF
Sbjct: 278 EILRLF 283


>gb|EOY28279.1| Transcription factor-related isoform 1 [Theobroma cacao]
          Length = 451

 Score =  134 bits (337), Expect = 3e-29
 Identities = 83/246 (33%), Positives = 140/246 (56%), Gaps = 10/246 (4%)
 Frame = +1

Query: 10  VHSLLEVKVLQKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSRLN--LPTAEDL 183
           +  L+++++L+     +    KLN  FQ  +RK +  G   P   M S +   LPT+E+L
Sbjct: 79  IDRLIQLRILEVIDRKKETSYKLNPTFQTNLRKHLIYGGILPREPMPSNVTVRLPTSEEL 138

Query: 184 EKYTWNKWQDVLQVLVNPDTSTKET----LVFKIFSETKLLSSAGSSLDITASGLNFLLM 351
           + Y   +W+  L  L++   + K T     + +IF    L      +  +T SG  FLLM
Sbjct: 139 DAYAHEQWECFLLQLISSGQAEKPTNFSSSMMRIFQRGLLCQREKEAPRLTESGFQFLLM 198

Query: 352 DMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTLS 525
           D   Q+W+++REYI  ++E    + DLI+FL+EL F+  G+ Y++  L   ++ ++K LS
Sbjct: 199 DTNAQLWYIIREYISNSEEQGVDQADLIAFLLELSFHTTGEAYNMNTLTDDQRAMIKDLS 258

Query: 526 SFGLVKFQ--INENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQK 699
             GLVK Q    +++FIPT+L++ L+  +SL  ++ + QG++VVE N ++YAY+ S +  
Sbjct: 259 DLGLVKLQQGRKDSWFIPTKLATNLS--VSLTDSSSRKQGFVVVETNFRMYAYSSSKLHC 316

Query: 700 CILNLF 717
            IL LF
Sbjct: 317 EILRLF 322


>ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus communis]
           gi|223541708|gb|EEF43256.1| tfiih, polypeptide, putative
           [Ricinus communis]
          Length = 451

 Score =  134 bits (336), Expect = 4e-29
 Identities = 82/225 (36%), Positives = 131/225 (58%), Gaps = 10/225 (4%)
 Frame = +1

Query: 73  KLNQKFQNQMRKAIEKGFKPPNNFMSSRL--NLPTAEDLEKYTWNKWQDVLQVLVNPDTS 246
           KLN  FQ  ++K +  G   P   ++S +   LPT E+L+ Y   +W+  L  L+N   +
Sbjct: 101 KLNPTFQTNLQKHLIDGGVLPGEPLASNIAVRLPTLEELDTYALGQWECFLLHLINSGHA 160

Query: 247 TKET----LVFKIFSETKLLSSAGSSLDITASGLNFLLMDMECQMWFVLREYIYKTQEA- 411
            + T     + KIF    L      +  +T SG  FLLMD   Q+W+++REYI  ++E  
Sbjct: 161 ERSTNFSSSMMKIFQRGLLTQRDKEAPRLTESGFQFLLMDTNAQLWYIIREYISNSEERG 220

Query: 412 -KRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTLSSFGLVKFQ--INENYFIPTEL 582
               DLISFL+EL F+I G+ Y+++ L   ++ ++K L+  GLVK Q    E++FIPT+L
Sbjct: 221 LDSADLISFLLELSFHITGEAYNMIMLTEFQRNMIKDLADLGLVKLQQGRKESWFIPTKL 280

Query: 583 SSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQKCILNLF 717
           ++ L+  MSL  ++ + QG++VVE N ++YAY+ S +   I+ LF
Sbjct: 281 ATNLS--MSLTDSSSRKQGFVVVETNFRMYAYSTSKLHCEIMRLF 323


>ref|XP_003601071.1| General transcription factor IIH subunit [Medicago truncatula]
           gi|355490119|gb|AES71322.1| General transcription factor
           IIH subunit [Medicago truncatula]
          Length = 452

 Score =  133 bits (335), Expect = 5e-29
 Identities = 81/236 (34%), Positives = 133/236 (56%), Gaps = 10/236 (4%)
 Frame = +1

Query: 40  QKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSRLN--LPTAEDLEKYTWNKWQD 213
           +KTY+       +N  +Q  ++  +  G   P   M S +   LPT EDLE Y   +W+ 
Sbjct: 98  EKTYQ-------VNSTYQKSLQNLLVHGGTLPRESMPSNITVRLPTLEDLETYALEQWEC 150

Query: 214 VLQVLVNPDTSTK----ETLVFKIFSETKLLSSAGSSLDITASGLNFLLMDMECQMWFVL 381
            L  L++P    K     + + K+F    L      +  +T SG  FLLMD   Q+W+++
Sbjct: 151 FLLQLISPSHVDKTLNISSSLMKVFQRRLLSQRDREAPKLTESGFQFLLMDTNAQLWYII 210

Query: 382 REYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTLSSFGLVKFQ-- 549
           REYI  ++E      DLISF++EL F+++G+ Y+I  L   ++ ++K L+  GLVK Q  
Sbjct: 211 REYITNSEERGVDAGDLISFMLELSFHVIGEAYNINTLTEFQRNIIKDLADLGLVKLQQG 270

Query: 550 INENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQKCILNLF 717
             E++FIPT+L++ L+  +S+  ++ + +G++VVE N +VYAY+ S +   IL LF
Sbjct: 271 RKESWFIPTKLATNLS--VSMTESSSRKEGFVVVETNFRVYAYSTSKLHCEILRLF 324


>ref|XP_006285003.1| hypothetical protein CARUB_v10006310mg [Capsella rubella]
           gi|482553708|gb|EOA17901.1| hypothetical protein
           CARUB_v10006310mg [Capsella rubella]
          Length = 452

 Score =  132 bits (332), Expect = 1e-28
 Identities = 85/247 (34%), Positives = 134/247 (54%), Gaps = 11/247 (4%)
 Frame = +1

Query: 10  VHSLLEVKVLQK-TYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSS--RLNLPTAED 180
           +  L+++++  + T         LN  FQN ++K I  G   P   M+S   + LP+ ++
Sbjct: 79  IDRLIQLRIFSEITDRKRGTSYSLNPTFQNNLQKHIISGGVLPREPMNSDNSIKLPSLQE 138

Query: 181 LEKYTWNKWQDVLQVLVNPDTSTK----ETLVFKIFSETKLLSSAGSSLDITASGLNFLL 348
           LE Y   +W+  L  L+N     K       + KIF    L         +T SG  FLL
Sbjct: 139 LETYALKQWERFLLQLINSGQGDKLNGISESMMKIFQRGLLSQRDKDGPRLTESGFQFLL 198

Query: 349 MDMECQMWFVLREYIYKTQEAK--RVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTL 522
           MD   Q+W+++REYI   +E K    DLISFL+EL F++ G+ Y+   L   +K  +K L
Sbjct: 199 MDTNAQLWYIIREYISNAEERKVDPADLISFLLELSFHVTGEAYNSNTLTELQKNTLKDL 258

Query: 523 SSFGLVKFQ--INENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQ 696
              GLVK Q  +  N+FIPT+L++ L+  +SL  ++ + +G++V+E N ++YAY+ S +Q
Sbjct: 259 EDLGLVKLQQGMKGNWFIPTKLATNLS--VSLSDSSARKEGFVVMETNFRMYAYSTSKLQ 316

Query: 697 KCILNLF 717
             IL LF
Sbjct: 317 CEILRLF 323


>ref|XP_003542754.1| PREDICTED: general transcription factor IIH subunit 4-like isoform
           X1 [Glycine max]
          Length = 451

 Score =  132 bits (332), Expect = 1e-28
 Identities = 83/236 (35%), Positives = 132/236 (55%), Gaps = 10/236 (4%)
 Frame = +1

Query: 40  QKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSRLN--LPTAEDLEKYTWNKWQD 213
           +KTY       K+N  FQ  ++K + +G   P   M S +   LPT E+LE Y   +W+ 
Sbjct: 97  EKTY-------KVNPTFQRSLQKLLVQGGTLPRESMPSNITVRLPTLENLEAYALEQWEC 149

Query: 214 VLQVLVNPDTSTK----ETLVFKIFSETKLLSSAGSSLDITASGLNFLLMDMECQMWFVL 381
            L  L++P    K     + + K+F    L      +  +T SG  FLLMD   Q+W+++
Sbjct: 150 FLLQLISPSQVEKPLNISSSLMKVFQRRILSYRDKEAPKLTESGFQFLLMDTNAQLWYII 209

Query: 382 REYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTLSSFGLVKFQIN 555
           REYI  +++      DLISF++EL F+ +G+ YS+  L   ++ ++  L+  GLVK Q  
Sbjct: 210 REYISNSEDRGVDAADLISFMLELSFHDIGEAYSVDTLTSFQRTIINDLADLGLVKIQQG 269

Query: 556 E--NYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQKCILNLF 717
              ++FIPT+L++ L+  MSL  ++ + QG++VVE N +VYAY+ S +   IL LF
Sbjct: 270 RKGSWFIPTKLATNLS--MSLADSSSRKQGFVVVETNFRVYAYSTSKLHCEILRLF 323


>emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]
          Length = 451

 Score =  132 bits (331), Expect = 1e-28
 Identities = 85/247 (34%), Positives = 138/247 (55%), Gaps = 11/247 (4%)
 Frame = +1

Query: 10  VHSLLEVKVLQKTYEGEAVRN-KLNQKFQNQMRKAIEKGFKPPNNFMSSRLN--LPTAED 180
           +  L++++V  +T + +   + +LN  FQ  ++K +  G   P   M S +   LP+ +D
Sbjct: 79  IDRLIQLRVFTETSDRKKETSYRLNPTFQTNLQKHLIYGGVLPREPMPSNITVRLPSLDD 138

Query: 181 LEKYTWNKWQDVLQVLVNPDTSTKET----LVFKIFSETKLLSSAGSSLDITASGLNFLL 348
           LE Y   +W+  L  L++   + K T     + K+F    L      +  +T SG  FLL
Sbjct: 139 LEAYALGQWECFLLQLISSTQTEKLTNFSSSLMKVFQRGLLTQREKEAPRLTESGFQFLL 198

Query: 349 MDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTL 522
           MD   Q+W+++REYI  ++E      DLISFL+EL F++ G+ Y+I  L   ++  +K L
Sbjct: 199 MDTNAQLWYIMREYISNSEERGVDPADLISFLLELSFHVTGEAYNINTLTEFQRNTIKDL 258

Query: 523 SSFGLVKFQ--INENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQ 696
              GLVK Q    E++FIPT+L++ L+  MSL   + + QG++VVE N ++YAY+ S + 
Sbjct: 259 VDLGLVKLQQGRKESWFIPTKLATNLS--MSLSDTSSRKQGFVVVETNFRLYAYSSSKLH 316

Query: 697 KCILNLF 717
             IL LF
Sbjct: 317 CEILRLF 323


>gb|EMJ15015.1| hypothetical protein PRUPE_ppa005553mg [Prunus persica]
          Length = 455

 Score =  131 bits (329), Expect = 2e-28
 Identities = 84/247 (34%), Positives = 137/247 (55%), Gaps = 11/247 (4%)
 Frame = +1

Query: 10  VHSLLEVKVLQKTYEGEAVRN-KLNQKFQNQMRKAIEKGFKPPNNFMSSRLN--LPTAED 180
           +  L+++++  +T + +      LN  FQ  ++K +  G   P   M S +   LP++ED
Sbjct: 79  IDRLIQLRIFTETVDRKRETTYTLNPIFQTNLKKLLLYGVVLPREPMPSNVTVRLPSSED 138

Query: 181 LEKYTWNKWQDVLQVLVNPDT----STKETLVFKIFSETKLLSSAGSSLDITASGLNFLL 348
           LE +   +W+  L  L+N       S   + + KIF    L      +  +T SG  FLL
Sbjct: 139 LEAFALGQWECFLLQLINSSQIERPSNISSSMMKIFQRGLLSQRDKEAPRLTESGFQFLL 198

Query: 349 MDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTL 522
           MD   Q+W+++REYI  ++E      DLISFL+EL F++ G+ Y+I  L   +K  +K L
Sbjct: 199 MDTNAQLWYIIREYISNSEERGVDSADLISFLLELSFHVTGEAYNINTLTEVQKNTIKDL 258

Query: 523 SSFGLVKFQ--INENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQ 696
           +  GLVK Q    +++FIPT L++ L+  +SL  ++ + QG++VVE N ++YAY+ S + 
Sbjct: 259 ADLGLVKLQQGRKDSWFIPTRLATNLS--VSLTDSSSRKQGFVVVETNFRLYAYSTSKLH 316

Query: 697 KCILNLF 717
             IL LF
Sbjct: 317 CEILRLF 323


>ref|XP_004232855.1| PREDICTED: general transcription factor IIH subunit 4-like [Solanum
           lycopersicum]
          Length = 453

 Score =  131 bits (329), Expect = 2e-28
 Identities = 88/249 (35%), Positives = 141/249 (56%), Gaps = 13/249 (5%)
 Frame = +1

Query: 10  VHSLLEVKVLQKTYEGEA-VRNKLNQKFQNQMRKAIEKGFKPPNNFMSSRLN--LPTAED 180
           +  L++++V+ +T++ +     +LN KFQ  ++K I  G   P   M S +   LP+ E+
Sbjct: 79  IDRLIQLRVMTETFDRKKEAMYQLNPKFQFNLQKHIVYGGVLPREPMPSNITVRLPSLEE 138

Query: 181 LEKYTWNKWQDVLQVLVNPDTSTKETLV----FKIFSETKLLSSAGSSLD--ITASGLNF 342
           LE Y   +W+  L  L++   + K T +     KIF +  LLS         +T SG  F
Sbjct: 139 LEAYAVEQWECFLLNLISSSEAGKTTNISSSMMKIF-QRGLLSQRDDREPPRLTESGFQF 197

Query: 343 LLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVK 516
           LLMD   Q+W+++REYI   +E      DLI+FL+EL F++ GK Y+   +   ++ ++K
Sbjct: 198 LLMDTNAQLWYIIREYITNAEERGVDSADLIAFLLELSFHVTGKAYNTNTITDLQRSIIK 257

Query: 517 TLSSFGLVKFQ--INENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSP 690
            LS  GLVK Q    E++FIPT+L++ L+  +SL     + QG+IV+E N ++YAY+ S 
Sbjct: 258 DLSDLGLVKLQQGRKESWFIPTKLATNLS--ISLADTTTRKQGFIVIETNFRLYAYSTSK 315

Query: 691 VQKCILNLF 717
           +   IL LF
Sbjct: 316 LHCEILRLF 324


>ref|XP_006347058.1| PREDICTED: general transcription factor IIH subunit 4-like [Solanum
           tuberosum]
          Length = 453

 Score =  130 bits (327), Expect = 4e-28
 Identities = 88/249 (35%), Positives = 140/249 (56%), Gaps = 13/249 (5%)
 Frame = +1

Query: 10  VHSLLEVKVLQKTYEGEAVRN-KLNQKFQNQMRKAIEKGFKPPNNFMSSRLN--LPTAED 180
           +  L++++V+ +T++ +     +LN KFQ  ++K I  G   P   M S +   LP+ E+
Sbjct: 79  IDRLIQLRVMTETFDRKKEATYQLNPKFQFNLQKHIVHGGILPREPMPSNITVRLPSLEE 138

Query: 181 LEKYTWNKWQDVLQVLVNPDTSTKETLV----FKIFSETKLLSSAGSSLD--ITASGLNF 342
           LE Y   +W+  L  L++     K T +     KIF +  LLS         +T SG  F
Sbjct: 139 LEAYAVEQWECFLLNLISSSEGGKTTNISSSMMKIF-QRGLLSQRDDREPPRLTESGFQF 197

Query: 343 LLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVK 516
           LLMD   Q+W+++REYI   +E      DLI+FL+EL F++ GK Y+   +   ++ ++K
Sbjct: 198 LLMDTNAQLWYIIREYITNAEERGVDSADLIAFLLELSFHVTGKAYNTNTITDLQRSIIK 257

Query: 517 TLSSFGLVKFQ--INENYFIPTELSSILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSP 690
            LS  GLVK Q    E++FIPT+L++ L+  +SL     + QG+IV+E N ++YAY+ S 
Sbjct: 258 DLSDLGLVKLQQGRKESWFIPTKLATNLS--ISLADTTSRKQGFIVIETNFRLYAYSTSK 315

Query: 691 VQKCILNLF 717
           +   IL LF
Sbjct: 316 LHCEILRLF 324


>ref|NP_974564.1| transcription factor-related protein [Arabidopsis thaliana]
           gi|332658438|gb|AEE83838.1| transcription factor-related
           protein [Arabidopsis thaliana]
          Length = 462

 Score =  129 bits (324), Expect = 9e-28
 Identities = 81/224 (36%), Positives = 126/224 (56%), Gaps = 10/224 (4%)
 Frame = +1

Query: 76  LNQKFQNQMRKAIEKGFKPPNNFMSS--RLNLPTAEDLEKYTWNKWQDVLQVLVNPDTST 249
           LN  FQN ++K I  G   P   M+S   + LP+ ++LE Y   +W+  L  L+N     
Sbjct: 102 LNPTFQNNLQKHIISGGVLPREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGE 161

Query: 250 KETLV----FKIFSETKLLSSAGSSLDITASGLNFLLMDMECQMWFVLREYIYKTQE--A 411
           K T +     KIF    L         +T SG  FLLMD   Q+W+++REYI   +E   
Sbjct: 162 KLTGISSSMMKIFQRGLLSQRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDV 221

Query: 412 KRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTLSSFGLVKFQ--INENYFIPTELS 585
              DLISFL+EL F++ G+ Y++  L   +   +K L+  GLVK Q    +++FIPT+L+
Sbjct: 222 DPADLISFLLELSFHVTGQAYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLA 281

Query: 586 SILASGMSLPLNNLQYQGYIVVEINSKVYAYTPSPVQKCILNLF 717
           + L+  +SL  ++ + +G++V+E N ++YAY+ S +Q  IL LF
Sbjct: 282 TNLS--VSLADSSARKEGFVVMETNFRMYAYSTSKLQCEILRLF 323