BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00020299
         (1010 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR17135.1| unknown [Picea sitchensis]                             264   5e-68
ref|XP_006850502.1| hypothetical protein AMTR_s00035p00224680 [A...   191   3e-46
ref|XP_001777438.1| predicted protein [Physcomitrella patens] gi...   163   9e-38
emb|CBI35920.3| unnamed protein product [Vitis vinifera]              160   1e-36
ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I sub...   160   1e-36
ref|XP_003595058.1| DNA-directed RNA polymerase I subunit rpa49 ...   155   3e-35
ref|XP_003595057.1| DNA-directed RNA polymerase I subunit rpa49 ...   155   3e-35
ref|XP_006350715.1| PREDICTED: uncharacterized protein LOC102603...   149   2e-33
ref|XP_004240985.1| PREDICTED: uncharacterized protein LOC101267...   149   2e-33
ref|XP_004141689.1| PREDICTED: uncharacterized protein LOC101221...   148   3e-33
ref|XP_006426597.1| hypothetical protein CICLE_v10025597mg [Citr...   145   3e-32
ref|XP_003625839.1| DNA-directed RNA polymerase I subunit rpa49 ...   144   5e-32
ref|XP_006465974.1| PREDICTED: uncharacterized protein LOC102616...   143   1e-31
gb|EOY23991.1| DNA-directed RNA polymerase I subunit rpa49, puta...   142   3e-31
gb|EXB29690.1| DNA-directed RNA polymerase I subunit rpa49 [Moru...   139   2e-30
ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypep...   137   5e-30
gb|EMJ16625.1| hypothetical protein PRUPE_ppa006096mg [Prunus pe...   135   2e-29
ref|XP_004290561.1| PREDICTED: DNA-directed RNA polymerase I sub...   134   4e-29
ref|XP_002339506.1| predicted protein [Populus trichocarpa] gi|5...   133   1e-28
ref|XP_004487983.1| PREDICTED: uncharacterized protein LOC101507...   132   3e-28

>gb|ABR17135.1| unknown [Picea sitchensis]
          Length = 443

 Score =  264 bits (674), Expect = 5e-68
 Identities = 138/272 (50%), Positives = 189/272 (69%), Gaps = 5/272 (1%)
 Frame = +3

Query: 207  EYEKPSNPQGLGAPFVGYFPSGFDPVQEEE---KVEMVAYQNSKKHRRNQIQVVATPSDL 377
            EY KP +  G G PFVGYF SG+DP+++ +    +E+  YQN++K +  Q+++VA P + 
Sbjct: 21   EYIKPQS--GFGCPFVGYFSSGYDPLKKGDASSSLEVGVYQNTRKFKTKQMELVARPKEA 78

Query: 378  NLDFVGTNYTGEAAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXX 557
            N+DFVGTNY+GE + WQPC++L+GVFDK T TLKLVPI+G RIFRME R++G +Y     
Sbjct: 79   NVDFVGTNYSGENSLWQPCNYLMGVFDKETSTLKLVPISGGRIFRMEARVQGMEYMSAVA 138

Query: 558  XXXXXXXXXX--RKRNIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIG 731
                        R+R  Q LT +FGTHKS+L +KR +K RL+EE + +   +G  +E+  
Sbjct: 139  EEENAEELTAENRQRQYQLLTATFGTHKSRLEAKRRDKSRLKEEALGDQSGIGKLFEEAA 198

Query: 732  QNTRALTHAEALAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELIN 911
            +NT  LT  EALA+ANAN VRNIPP+  +A  P+KVYLLE+II +EEW+Q+ P + ELI 
Sbjct: 199  KNTTVLTSKEALARANANIVRNIPPYDASATKPEKVYLLENIILKEEWDQQ-PNIGELIA 257

Query: 912  AGTSILLATDFQENSNYPLFVRNRIQKLKEQS 1007
            AGT+   A +FQ  S+YPLFVR+RI KL  +S
Sbjct: 258  AGTNARAAAEFQ-RSDYPLFVRSRIDKLGSES 288


>ref|XP_006850502.1| hypothetical protein AMTR_s00035p00224680 [Amborella trichopoda]
            gi|548854148|gb|ERN12083.1| hypothetical protein
            AMTR_s00035p00224680 [Amborella trichopoda]
          Length = 451

 Score =  191 bits (486), Expect = 3e-46
 Identities = 108/260 (41%), Positives = 153/260 (58%), Gaps = 7/260 (2%)
 Frame = +3

Query: 243  APFVGYFPSGFDPVQEEE---KVEMVAYQNSKKHRRNQIQVVATPSDLNLDFVGTNYTGE 413
            AP VGYFPSGFDP++  +   ++++ AY+    ++   +QVV +P   N+DFVGTNYTGE
Sbjct: 33   APCVGYFPSGFDPLRHNKNDGELKIKAYRAVPNYKSWCMQVVVSPEGSNVDFVGTNYTGE 92

Query: 414  AAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDY---XXXXXXXXXXXXXX 584
            AA  Q CS+ LGV DK    L +VPIAGD++FRMEPR+RG  Y                 
Sbjct: 93   AAVSQSCSYALGVLDKEKQILTVVPIAGDKVFRMEPRVRGLQYEDAVYEEPKEVENTPQI 152

Query: 585  XRKRNIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRALTHAEA 764
             R   I+ LT +FGT ++K  S +     ++EE +   + L     ++G++T  +T  EA
Sbjct: 153  KRSDKIRNLTLNFGTRQAKHSSMKRAAAFMKEEDLGTQEGLEAYVSEVGKSTSVMTKTEA 212

Query: 765  LAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTSILLATDF 944
            L +A    VRNIPP+   A TPDK YLL+ IIS  EW + S ++ EL+  G+    A  F
Sbjct: 213  LYQATKQVVRNIPPYDTEATTPDKAYLLDKIISPNEWAELSDVM-ELVEVGSCGASALKF 271

Query: 945  Q-ENSNYPLFVRNRIQKLKE 1001
            + +N  YP FVRNR+  +K+
Sbjct: 272  KMQNDYYPCFVRNRVGNIKK 291


>ref|XP_001777438.1| predicted protein [Physcomitrella patens]
           gi|162671169|gb|EDQ57725.1| predicted protein
           [Physcomitrella patens]
          Length = 524

 Score =  163 bits (413), Expect = 9e-38
 Identities = 98/293 (33%), Positives = 150/293 (51%), Gaps = 37/293 (12%)
 Frame = +3

Query: 231 QGLGAPFVGYFPSGFDPVQEEEKVEMVA-------YQNSKKHRRNQIQVVATPSDLNLDF 389
           +G   PFV YFP+GFDP+ E +  +  A       YQ   K +  Q Q+VA+     +DF
Sbjct: 64  EGRARPFVAYFPTGFDPLGEADHGDAAAALSSVKVYQGVDKLKAKQTQLVASTHG-QVDF 122

Query: 390 VGTNYTGEAAEWQPCSHLLGVFDKNTHTLKLVPIAGDR---------------------- 503
           VG NY GEAA WQPCS+ LGV+DK   TL+LVP+AG++                      
Sbjct: 123 VGLNYAGEAAAWQPCSYALGVYDKEKGTLQLVPLAGEKGIVDVVRKVRFGLVSGFMVYVG 182

Query: 504 --------IFRMEPRIRGFDYXXXXXXXXXXXXXXXRKRNIQALTTSFGTHKSKLMSKRM 659
                   I RMEPR+RG  Y                    + L  +FG+ KSK+ ++RM
Sbjct: 183 GSKTIGFDILRMEPRVRGMSYEWTDEEERVEDTREQSLLKRRMLVETFGSQKSKMRAQRM 242

Query: 660 EKRRLEEETITEHDKLGDEYEDIGQNTRALTHAEALAKANANSVRNIPPHHPTAETPDKV 839
           E+  ++E+ + + + +   +++ G+N   LT+ +AL +AN + VRN+PPH  +A TP+  
Sbjct: 243 ERGIVKEDALGDTEDMESLFQEAGENEALLTNEQALQQANLSVVRNVPPHDVSANTPEGA 302

Query: 840 YLLEDIISQEEWNQESPILQELINAGTSILLATDFQENSNYPLFVRNRIQKLK 998
           Y L+ +I  EEW  E+   +EL  A        +      YP FV +R+++++
Sbjct: 303 YPLDKLIPAEEW--ENLDTRELKTAAKK-AKDEELLRQQKYPNFVLSRLRRIR 352


>emb|CBI35920.3| unnamed protein product [Vitis vinifera]
          Length = 391

 Score =  160 bits (404), Expect = 1e-36
 Identities = 98/259 (37%), Positives = 151/259 (58%), Gaps = 7/259 (2%)
 Frame = +3

Query: 246  PFVGYFPSGFDPVQEEEKVE-----MVAYQNSKKHRRNQIQVVATPSDLNLDFVGTNYTG 410
            P VGYFPSGFDP + ++        +  ++N  K R N++Q+V +P+D  ++FVGT+Y+G
Sbjct: 13   PLVGYFPSGFDPHKPQDHESDPPPAVKVFRN--KARANRLQLVVSPNDSKVNFVGTSYSG 70

Query: 411  EAAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXXXXXXXR 590
            EAA  Q C++ LGV DK T TLK+VPIA ++IFR+EPR+ G D                 
Sbjct: 71   EAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVGGSDASVDEPSSLLKGEQTAE 130

Query: 591  KR--NIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRALTHAEA 764
            ++   ++ LT  +GT KS   +K+++    +++  ++ D L  + +++      + + EA
Sbjct: 131  EKAGRMRDLTNLYGTKKSITQAKKLQALNQKDDPRSQKD-LDRKLKEV------VINKEA 183

Query: 765  LAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTSILLATDF 944
            L   +A+S RNIPP+  TA TP + Y L+ II + EW+    IL +L+ AG  +      
Sbjct: 184  LESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDIL-DLLQAGVEV------ 236

Query: 945  QENSNYPLFVRNRIQKLKE 1001
             E+S Y  FV NRIQKLKE
Sbjct: 237  -ESSAYSSFVCNRIQKLKE 254


>ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Vitis
            vinifera]
          Length = 421

 Score =  160 bits (404), Expect = 1e-36
 Identities = 98/259 (37%), Positives = 151/259 (58%), Gaps = 7/259 (2%)
 Frame = +3

Query: 246  PFVGYFPSGFDPVQEEEKVE-----MVAYQNSKKHRRNQIQVVATPSDLNLDFVGTNYTG 410
            P VGYFPSGFDP + ++        +  ++N  K R N++Q+V +P+D  ++FVGT+Y+G
Sbjct: 43   PLVGYFPSGFDPHKPQDHESDPPPAVKVFRN--KARANRLQLVVSPNDSKVNFVGTSYSG 100

Query: 411  EAAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXXXXXXXR 590
            EAA  Q C++ LGV DK T TLK+VPIA ++IFR+EPR+ G D                 
Sbjct: 101  EAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVGGSDASVDEPSSLLKGEQTAE 160

Query: 591  KR--NIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRALTHAEA 764
            ++   ++ LT  +GT KS   +K+++    +++  ++ D L  + +++      + + EA
Sbjct: 161  EKAGRMRDLTNLYGTKKSITQAKKLQALNQKDDPRSQKD-LDRKLKEV------VINKEA 213

Query: 765  LAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTSILLATDF 944
            L   +A+S RNIPP+  TA TP + Y L+ II + EW+    IL +L+ AG  +      
Sbjct: 214  LESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDIL-DLLQAGVEV------ 266

Query: 945  QENSNYPLFVRNRIQKLKE 1001
             E+S Y  FV NRIQKLKE
Sbjct: 267  -ESSAYSSFVCNRIQKLKE 284


>ref|XP_003595058.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
            gi|355484106|gb|AES65309.1| DNA-directed RNA polymerase I
            subunit rpa49 [Medicago truncatula]
          Length = 411

 Score =  155 bits (391), Expect = 3e-35
 Identities = 95/260 (36%), Positives = 145/260 (55%), Gaps = 8/260 (3%)
 Frame = +3

Query: 246  PFVGYFPSGFDPVQEEEKVEMVAYQNSKKHRRNQIQVVATPSDLNLDFVGTNYTGE--AA 419
            PF+GYF SGFDPV+     ++  Y+N   H+R ++  V +P+  +++FVGT+Y GE  AA
Sbjct: 30   PFIGYFTSGFDPVKSSSGTDVQVYRNKVMHKRTEL--VVSPAGSSVEFVGTSYEGEAVAA 87

Query: 420  EWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDY------XXXXXXXXXXXXX 581
               P +++LGVFDK + TLK+VPI G++IFR+EPR++G +Y                   
Sbjct: 88   ARNPATYMLGVFDKESQTLKIVPIGGNKIFRLEPRVKGVEYKEPPPTPIKMVEEMTAEQL 147

Query: 582  XXRKRNIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRALTHAE 761
              +KRN  A   + GT +S  M  R+   R +EE   + + L ++ +++     AL + E
Sbjct: 148  AEKKRNTDA---ALGTKRSNKMHSRLADMRGDEEPEAKKN-LDEKMKNVEVKETALANTE 203

Query: 762  ALAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTSILLATD 941
                  A+  R+IPP++ +A TP + Y+L+ II  EEWN    I   L        +A D
Sbjct: 204  ------AHVTRHIPPYNSSATTPQEAYVLDKIILAEEWNYLQDIYYSLQKE-----VAAD 252

Query: 942  FQENSNYPLFVRNRIQKLKE 1001
            F   S YP F+RNRI +LK+
Sbjct: 253  F---SLYPSFIRNRINRLKK 269


>ref|XP_003595057.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
            gi|217073572|gb|ACJ85146.1| unknown [Medicago truncatula]
            gi|355484105|gb|AES65308.1| DNA-directed RNA polymerase I
            subunit rpa49 [Medicago truncatula]
            gi|388522465|gb|AFK49294.1| unknown [Medicago truncatula]
          Length = 428

 Score =  155 bits (391), Expect = 3e-35
 Identities = 95/260 (36%), Positives = 145/260 (55%), Gaps = 8/260 (3%)
 Frame = +3

Query: 246  PFVGYFPSGFDPVQEEEKVEMVAYQNSKKHRRNQIQVVATPSDLNLDFVGTNYTGE--AA 419
            PF+GYF SGFDPV+     ++  Y+N   H+R ++  V +P+  +++FVGT+Y GE  AA
Sbjct: 47   PFIGYFTSGFDPVKSSSGTDVQVYRNKVMHKRTEL--VVSPAGSSVEFVGTSYEGEAVAA 104

Query: 420  EWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDY------XXXXXXXXXXXXX 581
               P +++LGVFDK + TLK+VPI G++IFR+EPR++G +Y                   
Sbjct: 105  ARNPATYMLGVFDKESQTLKIVPIGGNKIFRLEPRVKGVEYKEPPPTPIKMVEEMTAEQL 164

Query: 582  XXRKRNIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRALTHAE 761
              +KRN  A   + GT +S  M  R+   R +EE   + + L ++ +++     AL + E
Sbjct: 165  AEKKRNTDA---ALGTKRSNKMHSRLADMRGDEEPEAKKN-LDEKMKNVEVKETALANTE 220

Query: 762  ALAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTSILLATD 941
                  A+  R+IPP++ +A TP + Y+L+ II  EEWN    I   L        +A D
Sbjct: 221  ------AHVTRHIPPYNSSATTPQEAYVLDKIILAEEWNYLQDIYYSLQKE-----VAAD 269

Query: 942  FQENSNYPLFVRNRIQKLKE 1001
            F   S YP F+RNRI +LK+
Sbjct: 270  F---SLYPSFIRNRINRLKK 286


>ref|XP_006350715.1| PREDICTED: uncharacterized protein LOC102603859 [Solanum tuberosum]
          Length = 431

 Score =  149 bits (375), Expect = 2e-33
 Identities = 97/265 (36%), Positives = 143/265 (53%), Gaps = 7/265 (2%)
 Frame = +3

Query: 225 NPQGLGAPFVGYFPSGFDPVQEE----EKVEMVAYQNSKKHRRNQIQVVATPSDLNLDFV 392
           NP  + +P VGYFPSG+DP+       E++    Y+N+K  R N++Q+V +P+   +DFV
Sbjct: 48  NPNNI-SPIVGYFPSGYDPLTNNNDGVEELSTKLYRNAK--RNNRLQLVVSPNGSQVDFV 104

Query: 393 GTNYTGEAAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXX 572
           GTNY+GEA   Q C++ LG+ DK T TLK+VPIA ++I R+EPR+RG +           
Sbjct: 105 GTNYSGEATSAQLCTYSLGILDKETQTLKIVPIAANKIIRLEPRVRGLEAQETEDPDTAK 164

Query: 573 XXXXXRKRN--IQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRA 746
                 +RN  ++ LT  + + K+   +++++  R +E+T           E+  +N   
Sbjct: 165 QELTAEERNDKMRELTQKYSSKKTIRQARKLDSLRQQEDT--------GNQEEFDRNIAG 216

Query: 747 LTHAEALAKANA-NSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTS 923
             + EAL  A A +S RNIPPH   A  P   Y L+ IIS+ EW+    I  EL  AG  
Sbjct: 217 AINKEALEVAVATDSARNIPPHDLDATIPQLAYPLDRIISKGEWDFLLDIF-ELTEAGAE 275

Query: 924 ILLATDFQENSNYPLFVRNRIQKLK 998
             +  D      YP FV NR  KL+
Sbjct: 276 --MTPDL-----YPSFVCNRSYKLE 293


>ref|XP_004240985.1| PREDICTED: uncharacterized protein LOC101267531 [Solanum
           lycopersicum]
          Length = 410

 Score =  149 bits (375), Expect = 2e-33
 Identities = 98/265 (36%), Positives = 142/265 (53%), Gaps = 7/265 (2%)
 Frame = +3

Query: 225 NPQGLGAPFVGYFPSGFDPVQEE----EKVEMVAYQNSKKHRRNQIQVVATPSDLNLDFV 392
           NP  + +P VGYFPSG+DP++      E++    Y+N +  R N++QVV +P    +DFV
Sbjct: 27  NPNNI-SPMVGYFPSGYDPLRNTNDGVEELSTKLYRNVR--RNNRLQVVVSPYGSQVDFV 83

Query: 393 GTNYTGEAAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXX 572
           GTNY+GEA   Q C++ LG+ DK T TLK+VPIA ++I R+EPR+RG +           
Sbjct: 84  GTNYSGEATSAQLCTYSLGILDKETQTLKIVPIAANKIIRLEPRVRGSEVPDAEDPDTAK 143

Query: 573 XXXXXRKRN--IQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRA 746
                 +RN  ++ LT  + + KS   +++++  R +E+T           E+  +N   
Sbjct: 144 QELTAEERNDKMRELTQMYSSKKSIRQARKLDSLRQQEDT--------GNQEEFDRNIAG 195

Query: 747 LTHAEALAKANA-NSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTS 923
             + EAL    A +S RNIPPH   A  P   Y L+ IIS+ EW+    I  EL  AG  
Sbjct: 196 AINKEALEVTVATDSARNIPPHDLDATIPQLAYPLDRIISKGEWDFLLDIF-ELTEAGAE 254

Query: 924 ILLATDFQENSNYPLFVRNRIQKLK 998
             +  D      YP FVRNR  KL+
Sbjct: 255 --MTPDL-----YPSFVRNRSYKLE 272


>ref|XP_004141689.1| PREDICTED: uncharacterized protein LOC101221697 [Cucumis sativus]
            gi|449480549|ref|XP_004155927.1| PREDICTED:
            uncharacterized protein LOC101224839 [Cucumis sativus]
          Length = 435

 Score =  148 bits (374), Expect = 3e-33
 Identities = 95/266 (35%), Positives = 146/266 (54%), Gaps = 6/266 (2%)
 Frame = +3

Query: 222  SNPQGLGAPFVGYFPSGFDPVQEEEKVE---MVAYQNSKKHRRNQIQVVATPSDLNLDFV 392
            SN      P VGYFPSGFDP ++ +K +   + A     K+R N++Q+V +P+  N+DFV
Sbjct: 49   SNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSPTGSNVDFV 108

Query: 393  GTNYTGEA-AEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXX 569
            GTNY GEA A  Q C++ LGV DK T +LK+VPIA + IFR++P++RG D          
Sbjct: 109  GTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVA 168

Query: 570  XXXXXXRKR--NIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTR 743
                  + +   ++ LT  +GT KSK  ++++   + E++  T+ D         G+   
Sbjct: 169  NEELSGQDKANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKSDL-------DGRMKN 221

Query: 744  ALTHAEALAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTS 923
             + + EAL    A   RNIP ++ +A TP + Y L+ II + EW+     L++L      
Sbjct: 222  VVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWS----FLEDLY----- 272

Query: 924  ILLATDFQENSNYPLFVRNRIQKLKE 1001
              L    + ++ YP FVRNRI KL++
Sbjct: 273  FRLQETAEISATYPSFVRNRIYKLQD 298


>ref|XP_006426597.1| hypothetical protein CICLE_v10025597mg [Citrus clementina]
            gi|557528587|gb|ESR39837.1| hypothetical protein
            CICLE_v10025597mg [Citrus clementina]
          Length = 447

 Score =  145 bits (365), Expect = 3e-32
 Identities = 94/259 (36%), Positives = 143/259 (55%), Gaps = 7/259 (2%)
 Frame = +3

Query: 246  PFVGYFPSGFDPV---QEEE---KVEMVAYQNSKKHRRNQIQVVATPSDLNLDFVGTNYT 407
            P VGYFPS + P     +EE   KV +    N KK+R  ++++V +P D ++D+VGT+Y+
Sbjct: 69   PLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYS 128

Query: 408  GEAAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXXXXXXX 587
            GEA   Q C + +GV D+NT TLK+VPIA ++IFR+EPR+RG D                
Sbjct: 129  GEAMAPQFCHYAVGVLDRNTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEV- 187

Query: 588  RKRNIQA-LTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRALTHAEA 764
             + N++A L T +GT KS   SK+M     E +  ++ D L  + + +  N       EA
Sbjct: 188  -QANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKD-LALKMKSVKIN------KEA 239

Query: 765  LAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTSILLATDF 944
            L    +++V N+PP+   A TP + Y L+ II + EW+    I    ++AG+ ++     
Sbjct: 240  LESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNH-VSAGSEVI----- 293

Query: 945  QENSNYPLFVRNRIQKLKE 1001
              +  YP FV NRI KL+E
Sbjct: 294  --SDAYPSFVCNRIHKLRE 310


>ref|XP_003625839.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
            gi|355500854|gb|AES82057.1| DNA-directed RNA polymerase I
            subunit rpa49 [Medicago truncatula]
          Length = 412

 Score =  144 bits (363), Expect = 5e-32
 Identities = 92/268 (34%), Positives = 146/268 (54%), Gaps = 8/268 (2%)
 Frame = +3

Query: 222  SNPQGLGAPFVGYFPSGFDPVQEEE-KVEMVAYQNSKKHRRNQIQVVATPSDLNLDFVGT 398
            SNP  +  PFVGYF SGFDPV+      ++  Y+N   H+R ++  V +P+   ++FVGT
Sbjct: 23   SNPTKM-PPFVGYFTSGFDPVKSSSGSTDVQVYRNKVMHKRTEL--VVSPAGSLVEFVGT 79

Query: 399  NYTGEAAEW--QPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXX 572
            +Y GEAA     P +++LGVFDK + TLK+VPI G++IFR+EPR++G +Y          
Sbjct: 80   SYEGEAAAVARNPATYMLGVFDKESQTLKIVPIGGNKIFRLEPRVKGVEYKEPTPTP--- 136

Query: 573  XXXXXRKRNIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQN-TRAL 749
                   + ++ LT    T K +     +  ++ ++  I   +   DE  +  +N    +
Sbjct: 137  ------TKMVEELTAEQWTEKKRKADAALGTKKSKQMLIWLDEMTADEEPEAKKNLDEKM 190

Query: 750  THAE----ALAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAG 917
             + E    ALA   A+  R+IPP++ +A TP + Y+L+ II  +EWN     LQ++  + 
Sbjct: 191  KNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILADEWN----YLQDIYYS- 245

Query: 918  TSILLATDFQENSNYPLFVRNRIQKLKE 1001
               L   +    S YP F+RNRI +LK+
Sbjct: 246  ---LQKEEAANFSLYPSFIRNRINRLKK 270


>ref|XP_006465974.1| PREDICTED: uncharacterized protein LOC102616137 [Citrus sinensis]
          Length = 447

 Score =  143 bits (360), Expect = 1e-31
 Identities = 93/259 (35%), Positives = 143/259 (55%), Gaps = 7/259 (2%)
 Frame = +3

Query: 246  PFVGYFPSGFDPV---QEEE---KVEMVAYQNSKKHRRNQIQVVATPSDLNLDFVGTNYT 407
            P VGYFPS + P     +EE   KV +    N KK+R  ++++V +P D ++D+VGT+Y+
Sbjct: 69   PLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYS 128

Query: 408  GEAAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXXXXXXX 587
            GEA   Q C + +GV D++T TLK+VPIA ++IFR+EPR+RG D                
Sbjct: 129  GEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEV- 187

Query: 588  RKRNIQA-LTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRALTHAEA 764
             + N++A L T +GT KS   SK+M     E +  ++ D L  + + +  N       EA
Sbjct: 188  -QANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKD-LALKMKSVKIN------KEA 239

Query: 765  LAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTSILLATDF 944
            L    +++V N+PP+   A TP + Y L+ II + EW+    I    ++AG+ ++     
Sbjct: 240  LESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNH-VSAGSEVI----- 293

Query: 945  QENSNYPLFVRNRIQKLKE 1001
              +  YP FV NRI KL+E
Sbjct: 294  --SDAYPSFVCNRIHKLRE 310


>gb|EOY23991.1| DNA-directed RNA polymerase I subunit rpa49, putative [Theobroma
           cacao]
          Length = 457

 Score =  142 bits (357), Expect = 3e-31
 Identities = 95/275 (34%), Positives = 140/275 (50%), Gaps = 24/275 (8%)
 Frame = +3

Query: 246 PFVGYFPSGFDPV-----------QEEEKVE----------MVAYQNSKKHRRNQIQVVA 362
           P V YFPSG++P            +EEE+ E          +  Y+N  + + N++QVV 
Sbjct: 59  PLVAYFPSGYNPCKTDPQTRQGEEEEEEEEEGPDNKSNQPRVKVYRNMAQRKTNRLQVVV 118

Query: 363 TPSDLNLDFVGTNYTGEAAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFD- 539
           +PS  N+DFVG+NY+GEAA  Q C + LGV D+ T TLK++PIA ++IFR+EPR+R  + 
Sbjct: 119 SPSGSNVDFVGSNYSGEAAAAQVCRYSLGVLDRETRTLKIIPIASNKIFRLEPRVRSSET 178

Query: 540 -YXXXXXXXXXXXXXXXRKRNIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDK-LGD 713
                            ++  +  LT  +GT K +   KR +   L++E   E  K L +
Sbjct: 179 ANKDVSSSVKSELTTEDKEDKMGELTALYGTKKDR--KKRKDLNNLKKEVDPESQKSLDE 236

Query: 714 EYEDIGQNTRALTHAEALAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPI 893
           + E +  N  AL +  AL        RNIPPH  +A TP + Y L+ II + +W     I
Sbjct: 237 KIEQVAFNKEALGNTSALV------ARNIPPHDSSATTPVEAYPLDKIILKGDWEFLGDI 290

Query: 894 LQELINAGTSILLATDFQENSNYPLFVRNRIQKLK 998
              L+  G  +        ++ YP FV NRI KL+
Sbjct: 291 -YGLLEVGAEV-------ASNAYPTFVCNRINKLE 317


>gb|EXB29690.1| DNA-directed RNA polymerase I subunit rpa49 [Morus notabilis]
          Length = 438

 Score =  139 bits (350), Expect = 2e-30
 Identities = 88/259 (33%), Positives = 142/259 (54%), Gaps = 7/259 (2%)
 Frame = +3

Query: 246  PFVGYFPSGFDPVQEEEKVEMVA----YQNSKKHRRNQIQVVATPSDLNLDFVGTNYTGE 413
            P VGYFPSGFDP   +++    A    ++N  K +R  +Q+V +P+  N+DFVGTNY+GE
Sbjct: 59   PLVGYFPSGFDPKDGDDESSATAMARVFRNRNKPKR--LQLVVSPNGANVDFVGTNYSGE 116

Query: 414  A-AEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRG--FDYXXXXXXXXXXXXXX 584
            A A  Q C++ LGV DK T TLK+VPIA ++IFR+EP++RG                   
Sbjct: 117  AEAGQQHCNYALGVLDKETQTLKIVPIASNKIFRLEPKVRGLRLPNKDSGSLAEGERSAL 176

Query: 585  XRKRNIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRALTHAEA 764
             +   I+ LT  +GT+KS   +K+ +     ++  T+ D + ++ + I      +   +A
Sbjct: 177  SKSEKIKGLTDRYGTNKSIREAKKRDALYQNDDPETQKD-MDEKIKQI------VIKKDA 229

Query: 765  LAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTSILLATDF 944
            L     ++ RNIPP++  A +  + Y +E II + EW+     L+++      +L     
Sbjct: 230  LESTQVHTDRNIPPYNAAATSSQEAYPIEKIILKGEWD----FLEDIYR----LLQEEAE 281

Query: 945  QENSNYPLFVRNRIQKLKE 1001
             ++ +YP F+ NRIQ L+E
Sbjct: 282  LKSDDYPSFISNRIQNLRE 300


>ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus
            communis] gi|223539445|gb|EEF41035.1| DNA-directed RNA
            polymerase I 49 kDa polypeptide, putative [Ricinus
            communis]
          Length = 481

 Score =  137 bits (346), Expect = 5e-30
 Identities = 94/287 (32%), Positives = 140/287 (48%), Gaps = 35/287 (12%)
 Frame = +3

Query: 246  PFVGYFPSGFDPVQEEE-------------------------------KVEMVAYQNSKK 332
            P VGYFPSG+ P +  E                               K+E  + + ++K
Sbjct: 74   PIVGYFPSGYKPSKHNESNNLHDTSNEENATSSLSQPSVKFYRNAQRTKIEKSSNERNEK 133

Query: 333  HRRNQ-IQVVATPSDLNLDFVGTNYTGEAAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIF 509
             R ++ +++V +P+  N+DFVG +Y GEA   Q C++ LGV DK T TLK++PIAG++IF
Sbjct: 134  WRSSERMELVVSPNGSNVDFVGKSYKGEATAAQLCTYALGVLDKKTKTLKIMPIAGNKIF 193

Query: 510  RMEPRIRGFDYXXXXXXXXXXXXXXXRKRNI--QALTTSFGTHKSKLMSKRMEKRRLEEE 683
            R+EP+I+G D                    +  + LT ++GT KS    KRME       
Sbjct: 194  RLEPKIQGVDASDKEPSVLENEDLSKENMAVRKKTLTDTYGTKKSITQGKRME------- 246

Query: 684  TITEHDKLGDEYEDIGQN-TRALTHAEALAKANANSVRNIPPHHPTAETPDKVYLLEDII 860
             I       +  +D+ Q     + +  AL   +A+  RNIPPH+ +A TP + Y L  II
Sbjct: 247  -IMMQGDNPESRKDLDQKIDNVVVNKAALEDTSAHVARNIPPHNTSATTPQEAYPLGRII 305

Query: 861  SQEEWNQESPILQELINAGTSILLATDFQENSNYPLFVRNRIQKLKE 1001
               EW+     L E++ AG    +       + YP+FVRNRI KL+E
Sbjct: 306  LTGEWDYLED-LYEILQAGEGAAI-------NAYPVFVRNRIHKLRE 344


>gb|EMJ16625.1| hypothetical protein PRUPE_ppa006096mg [Prunus persica]
          Length = 427

 Score =  135 bits (341), Expect = 2e-29
 Identities = 88/257 (34%), Positives = 134/257 (52%), Gaps = 5/257 (1%)
 Frame = +3

Query: 246  PFVGYFPSGFDPVQE--EEKVEMVAYQNSKKHRRNQIQVVATPSDLNLDFVGTNYTGEAA 419
            P VGYFP  FDP +       ++  +++SKK RR  +Q+V TP+  N+DFVGTNYTGEA 
Sbjct: 50   PLVGYFPCSFDPTKSPYSNSTDVGLFRDSKKPRR--LQIVVTPNGTNVDFVGTNYTGEAT 107

Query: 420  EWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXXXXXXXRKR- 596
              Q C+  LGV DK T TLK++P+A ++IFR++P +RG++Y                ++ 
Sbjct: 108  TGQSCNFALGVLDKATQTLKILPVASNKIFRLQPMVRGYNYSAKEPESSVKEQLTGEEKA 167

Query: 597  -NIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRALT-HAEALA 770
                 L + +GT K+   SK++  R L++E   E  K      D+    + +  + EAL 
Sbjct: 168  EKQMELQSRYGTKKAIRESKKL--RSLKQEDGPESQK------DLDAKIKLIVPNKEALE 219

Query: 771  KANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTSILLATDFQE 950
               +   R+IPP + +A TP + Y L+ II   EW+    I  E    G  +        
Sbjct: 220  STESQISRHIPPFNESATTPQEAYSLDKIILTGEWDLLGDI-YEHFQGGAEV-------S 271

Query: 951  NSNYPLFVRNRIQKLKE 1001
               +P FV +RI KL++
Sbjct: 272  WDAFPRFVCHRIHKLQD 288


>ref|XP_004290561.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like [Fragaria
            vesca subsp. vesca]
          Length = 402

 Score =  134 bits (338), Expect = 4e-29
 Identities = 92/266 (34%), Positives = 139/266 (52%), Gaps = 7/266 (2%)
 Frame = +3

Query: 225  NPQGLGAPFVGYFPSGFDPVQEEEKVEMVAYQNSKKHRRNQIQVVATP-SDLNLDFVGTN 401
            NP+ + AP VGYFPSGFDP      V +  +   K+    ++Q+V TP ++  +DFV T+
Sbjct: 19   NPERM-APLVGYFPSGFDPDPNSTNVGVFRH---KQRGGTRLQLVVTPENEAKVDFVATS 74

Query: 402  YTGEAAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFD-----YXXXXXXXX 566
            Y GEA   + CS+ LG+FDK T TLK+VPIA +++FR+EP+++G D              
Sbjct: 75   YAGEAQAGEYCSYGLGIFDKATRTLKIVPIANNKVFRLEPKVQGIDSSNENEKPASSVIG 134

Query: 567  XXXXXXXRKRNIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRA 746
                    ++ IQ L   +GT KS   +K+M+  + E +         D + D+    + 
Sbjct: 135  ELSEHEKAEKRIQ-LHNLYGTKKSIRKNKKMQMLKRENDP--------DAHNDLDVIKQC 185

Query: 747  LTHAEALAKAN-ANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTS 923
            +T  E L +A+  + VRN PP + +A TP + Y L+ IIS  EW      LQ+       
Sbjct: 186  MTTTEDLLEASEGHMVRNTPPFNASATTPQEAYPLDKIISTGEWK----FLQD------- 234

Query: 924  ILLATDFQENSNYPLFVRNRIQKLKE 1001
              +    +  S  P FVRNRI KL++
Sbjct: 235  --IHKPLKGESELPQFVRNRIHKLQQ 258


>ref|XP_002339506.1| predicted protein [Populus trichocarpa]
            gi|566150007|ref|XP_006369274.1| hypothetical protein
            POPTR_0001s20580g [Populus trichocarpa]
            gi|550347732|gb|ERP65843.1| hypothetical protein
            POPTR_0001s20580g [Populus trichocarpa]
          Length = 472

 Score =  133 bits (335), Expect = 1e-28
 Identities = 91/295 (30%), Positives = 151/295 (51%), Gaps = 29/295 (9%)
 Frame = +3

Query: 204  IEYEKPSNPQGLGAPFVGYFPSGFDPVQEEE--------------------------KVE 305
            ++ E  +N      P VGYFPSG++P +  +                          KVE
Sbjct: 56   VKLELVNNQVDKTPPVVGYFPSGYNPHKTNDINDAQEPILPLAAPPSVKLYRNAQRAKVE 115

Query: 306  MVAYQNSKKHRRNQ-IQVVATPSDLNLDFVGTNYTGEAAEWQPCSHLLGVFDKNTHTLKL 482
              + + ++K R ++ +++V +P+  N++FVG +Y GEA   Q C++ LGV DK T TLK+
Sbjct: 116  KSSGEKNEKGRTSERLELVVSPNGSNVEFVGNSYKGEAMAAQLCTYALGVLDKATQTLKI 175

Query: 483  VPIAGDRIFRMEPRIRGFDYXXXXXXXXXXXXXXXRKR--NIQALTTSFGTHKSKLMSKR 656
            +PIAG++I R+EP++RG                   +R   I+ L   +G  KS +  K+
Sbjct: 176  MPIAGNKILRLEPKLRGSLAADKEHANFENGEITAEQRAARIRQLNVQYGPKKSIIQDKK 235

Query: 657  MEKRRLEEETITEHDKLGDEYEDIGQNTRALTHAEALAKANANSVRNIPPHHPTAETPDK 836
            M+  R  ++ +++ D LG + E+      A  + +AL   + +S RNIPP++ +A TP +
Sbjct: 236  MQALRKGDDPLSQKD-LGRKIEN------APINKDALESTSGHSARNIPPYNSSAITPQE 288

Query: 837  VYLLEDIISQEEWNQESPILQELINAGTSILLATDFQENSNYPLFVRNRIQKLKE 1001
             Y L+ II   EW+    I  +++  G  +        ++ YP FV NRIQKL+E
Sbjct: 289  AYPLDGIILTGEWDFLEDI-YKILQVGGEV-------ASNAYPTFVCNRIQKLRE 335


>ref|XP_004487983.1| PREDICTED: uncharacterized protein LOC101507754 [Cicer arietinum]
          Length = 418

 Score =  132 bits (331), Expect = 3e-28
 Identities = 83/257 (32%), Positives = 131/257 (50%), Gaps = 5/257 (1%)
 Frame = +3

Query: 246  PFVGYFPSGFDPVQEEE-KVEMVAYQNSKKHRRNQIQVVATPSDLNLDFVGTNYTGEAAE 422
            P++GYFPSGFDPV+          Y+N  K+   ++++V +P+  ++DFVGTNY GEA  
Sbjct: 42   PYIGYFPSGFDPVKSTSVSAGFQVYRN--KNMTKRLELVVSPAGSSVDFVGTNYMGEATG 99

Query: 423  WQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXXXXXXXRKRNI 602
                 + LGVFDK + TLK+VPI  ++IFR++P+++G +Y                ++  
Sbjct: 100  SHRSMYALGVFDKESQTLKVVPIGANKIFRLDPKVKGVEYNLYKESANGTVEELSPEQ-- 157

Query: 603  QALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYED----IGQNTRALTHAEALA 770
               T +   H + ++     KR +E        +  DE E     + +    + +  ALA
Sbjct: 158  ---TAAKRRHSTAVLG---TKRHIESTNKILDMRKDDEPESKKNLVEKMKNVVVNEAALA 211

Query: 771  KANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTSILLATDFQE 950
               A   RNIPP+  +A TP + Y+L+ II + EW+    I          IL   +   
Sbjct: 212  NTEATVSRNIPPYDTSATTPQEAYVLDRIILEREWSYLEDIYY--------ILEQGEAAN 263

Query: 951  NSNYPLFVRNRIQKLKE 1001
             S YP+F+RNRI +LK+
Sbjct: 264  FSAYPIFIRNRIGRLKK 280