BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00019953
         (555 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EGB06048.1| hypothetical protein AURANDRAFT_11909, partial [A...    80   3e-13
ref|NP_197800.1| RNA polymerase sigma factor 5 [Arabidopsis thal...    76   6e-12
ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,...    76   6e-12
ref|XP_006394670.1| hypothetical protein EUTSA_v10004166mg [Eutr...    76   6e-12
dbj|BAJ34205.1| unnamed protein product [Thellungiella halophila]      76   6e-12
ref|XP_006287402.1| hypothetical protein CARUB_v10000608mg, part...    75   1e-11
ref|NP_001254001.1| RNA polymerase sigma factor rpoD-like [Glyci...    75   1e-11
ref|YP_506202.1| RNA polymerase sigma factor RpoD [Neorickettsia...    75   1e-11
ref|XP_002874170.1| hypothetical protein ARALYDRAFT_489269 [Arab...    75   1e-11
ref|YP_003081530.1| RNA polymerase sigma-70 factor (RpoD) [Neori...    75   1e-11
ref|XP_004502613.1| PREDICTED: RNA polymerase sigma factor sigE,...    74   2e-11
ref|XP_006578934.1| PREDICTED: RNA polymerase sigma factor sigE,...    74   2e-11
ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citr...    74   3e-11
ref|XP_003602198.1| RNA polymerase sigma factor rpoD [Medicago t...    73   4e-11
gb|AFW79410.1| hypothetical protein ZEAMMB73_457711 [Zea mays]         73   5e-11
gb|EPS69584.1| hypothetical protein M569_05182, partial [Genlise...    72   7e-11
gb|EMS53739.1| RNA polymerase sigma factor rpoD [Triticum urartu]      72   7e-11
gb|ESW09563.1| hypothetical protein PHAVU_009G1376001g, partial ...    72   9e-11
gb|EMT05926.1| RNA polymerase sigma factor rpoD [Aegilops tauschii]    72   9e-11
ref|XP_004234180.1| PREDICTED: RNA polymerase sigma factor sigE,...    72   9e-11

>gb|EGB06048.1| hypothetical protein AURANDRAFT_11909, partial [Aureococcus
           anophagefferens]
          Length = 325

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
 Frame = +1

Query: 37  KKLGDVTLEFSDLCNAGLQGLLVALDRFQPGRKIRFSTYAFFWIRHYVTQAIAHDS-VFS 213
           K+ GD  L F+DLC  G  GL  A DRF P +  RFSTYA +WIR  V  A+AH S    
Sbjct: 95  KRYGDCGLAFTDLCQEGNFGLAKACDRFDPSKGFRFSTYAVWWIRQAVAHAVAHQSRTIR 154

Query: 214 LPSNISXXXXXXXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKG--NLRPTKVDL 387
           LP+++                  GRD T +E+   M LD +K +++ +       T VD 
Sbjct: 155 LPTHVHEKLRRMKKHKVALEKQTGRDATDDEIAREMSLDADKLRRLRRAARGTVSTDVDA 214

Query: 388 ENI 396
           EN+
Sbjct: 215 ENL 217


>ref|NP_197800.1| RNA polymerase sigma factor 5 [Arabidopsis thaliana]
           gi|75267675|sp|Q9ZNX9.1|SIGE_ARATH RecName: Full=RNA
           polymerase sigma factor sigE,
           chloroplastic/mitochondrial; Short=Sigma factor E;
           Short=Sigma-E; AltName: Full=RNA polymerase sigma factor
           sig5; Short=Atsig5; Short=Sigma factor 5; Flags:
           Precursor gi|4033838|emb|CAA77213.1| sigma-like factor
           [Arabidopsis thaliana] gi|4972299|dbj|BAA78109.1| RNA
           polymerase sigma subunit SigE [Arabidopsis thaliana]
           gi|10178160|dbj|BAB11572.1| sigma-like factor
           [Arabidopsis thaliana] gi|222423237|dbj|BAH19595.1|
           AT5G24120 [Arabidopsis thaliana]
           gi|332005876|gb|AED93259.1| RNA polymerase sigma factor
           5 [Arabidopsis thaliana]
          Length = 517

 Score = 75.9 bits (185), Expect = 6e-12
 Identities = 33/97 (34%), Positives = 56/97 (57%)
 Frame = +1

Query: 61  EFSDLCNAGLQGLLVALDRFQPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXX 240
           +F DLC AG++GL+ A+DRF+P RK R STY  FWIRH + +++   +   +P  +    
Sbjct: 307 KFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESVR 366

Query: 241 XXXXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQV 351
                         GR PT++E+   +++ PE++++V
Sbjct: 367 VEIYKAKTELWFEMGRPPTEDEVVERLKITPERYREV 403


>ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 516

 Score = 75.9 bits (185), Expect = 6e-12
 Identities = 42/132 (31%), Positives = 64/132 (48%)
 Frame = +1

Query: 16  YRQNFSNKKLGDVTLEFSDLCNAGLQGLLVALDRFQPGRKIRFSTYAFFWIRHYVTQAIA 195
           Y Q+F+N         F DLC AG++GL+ A+DRF+P RK R STY  FWIRH + +++ 
Sbjct: 297 YFQDFANGS------RFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMT 350

Query: 196 HDSVFSLPSNISXXXXXXXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPT 375
             S   +P  +                   R PT EE+   + L PE++ +V K +   +
Sbjct: 351 TSSFTKVPFGLESIRVEIQKAKLELLFELQRIPTDEEIIRRVGLSPERYHEVMKVSKPVS 410

Query: 376 KVDLENIADENE 411
            +   N   + E
Sbjct: 411 SLHARNKTTQEE 422


>ref|XP_006394670.1| hypothetical protein EUTSA_v10004166mg [Eutrema salsugineum]
           gi|557091309|gb|ESQ31956.1| hypothetical protein
           EUTSA_v10004166mg [Eutrema salsugineum]
          Length = 463

 Score = 75.9 bits (185), Expect = 6e-12
 Identities = 37/112 (33%), Positives = 62/112 (55%)
 Frame = +1

Query: 16  YRQNFSNKKLGDVTLEFSDLCNAGLQGLLVALDRFQPGRKIRFSTYAFFWIRHYVTQAIA 195
           Y Q+F+N        +F DLC AG++GL+ A+DRF+P RK R STY  FWIRH + +++ 
Sbjct: 292 YFQDFTNGP------KFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMT 345

Query: 196 HDSVFSLPSNISXXXXXXXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQV 351
             +   +P  +                  GR PT++E+   +++ PE++++V
Sbjct: 346 TSNFTRVPFGLESVRVEIYKTKMELLFELGRLPTEDEVVERLKISPERYREV 397


>dbj|BAJ34205.1| unnamed protein product [Thellungiella halophila]
          Length = 511

 Score = 75.9 bits (185), Expect = 6e-12
 Identities = 37/112 (33%), Positives = 62/112 (55%)
 Frame = +1

Query: 16  YRQNFSNKKLGDVTLEFSDLCNAGLQGLLVALDRFQPGRKIRFSTYAFFWIRHYVTQAIA 195
           Y Q+F+N        +F DLC AG++GL+ A+DRF+P RK R STY  FWIRH + +++ 
Sbjct: 292 YFQDFTNGP------KFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMT 345

Query: 196 HDSVFSLPSNISXXXXXXXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQV 351
             +   +P  +                  GR PT++E+   +++ PE++++V
Sbjct: 346 TSNFTRVPFGLESVRVEIYKTKMELLFELGRLPTEDEVVERLKISPERYREV 397


>ref|XP_006287402.1| hypothetical protein CARUB_v10000608mg, partial [Capsella rubella]
           gi|482556108|gb|EOA20300.1| hypothetical protein
           CARUB_v10000608mg, partial [Capsella rubella]
          Length = 557

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 37/112 (33%), Positives = 61/112 (54%)
 Frame = +1

Query: 16  YRQNFSNKKLGDVTLEFSDLCNAGLQGLLVALDRFQPGRKIRFSTYAFFWIRHYVTQAIA 195
           Y Q F+N        +F DLC AG++GL+ A+DRF+P RK R STY  FWIRH + +++ 
Sbjct: 338 YFQEFTNGP------KFQDLCQAGMKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMT 391

Query: 196 HDSVFSLPSNISXXXXXXXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQV 351
             +   +P  +                  GR PT++E+   +++ PE++++V
Sbjct: 392 TSNFTRVPFGLESVRVEIYKAKMELLFELGRLPTEDEVIKRLKITPERYREV 443


>ref|NP_001254001.1| RNA polymerase sigma factor rpoD-like [Glycine max]
           gi|382365028|dbj|BAM05477.1| sigma-like factor 5A
           [Glycine max]
          Length = 512

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 40/132 (30%), Positives = 68/132 (51%)
 Frame = +1

Query: 16  YRQNFSNKKLGDVTLEFSDLCNAGLQGLLVALDRFQPGRKIRFSTYAFFWIRHYVTQAIA 195
           Y Q+F++ +       F DLC AG++GL+ A+DRF+P R+++ STY+ FWIRH + ++I 
Sbjct: 293 YFQDFASGR------RFQDLCQAGVKGLITAIDRFEPKRRLQLSTYSLFWIRHSIVRSIT 346

Query: 196 HDSVFSLPSNISXXXXXXXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPT 375
             S   +P  +                   R PT+EEL   + + PE++ +V K +    
Sbjct: 347 LSSFTRVPFGLERVRVDIQRTKLKLTFELQRSPTEEELVERIGISPERYYEVMKASKPIL 406

Query: 376 KVDLENIADENE 411
            +   +I  + E
Sbjct: 407 SLHSRHITTQEE 418


>ref|YP_506202.1| RNA polymerase sigma factor RpoD [Neorickettsia sennetsu str.
           Miyayama] gi|499770974|ref|WP_011451708.1| RNA
           polymerase sigma factor RpoD [Neorickettsia sennetsu]
           gi|88600482|gb|ABD45950.1| RNA polymerase sigma factor
           RpoD [Neorickettsia sennetsu str. Miyayama]
          Length = 620

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
 Frame = +1

Query: 37  KKLGDVTLEFSDLCNAGLQGLLVALDRFQPGRKIRFSTYAFFWIRHYVTQAIAH-DSVFS 213
           KK  +  + F DL   G  GL+ A+D+F   R  +FSTYA +W R  +T+AIA   S+  
Sbjct: 378 KKYTNRGMPFPDLIQEGNIGLMKAVDKFDHRRGHKFSTYATWWCRQAITRAIADCGSIVR 437

Query: 214 LPSNISXXXXXXXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLEN 393
            P +I               +LNGR+PT EE+ N++++ P+K K+  K N  P  ++   
Sbjct: 438 KPVHIHETANKVMRTRRRLYNLNGREPTVEEIANLLKISPDKVKKSLKVNQDPISLESPV 497

Query: 394 IADENEGPLSWWIDN 438
             D N G    +I++
Sbjct: 498 GDDSNSGSFGDFIED 512


>ref|XP_002874170.1| hypothetical protein ARALYDRAFT_489269 [Arabidopsis lyrata subsp.
           lyrata] gi|297320007|gb|EFH50429.1| hypothetical protein
           ARALYDRAFT_489269 [Arabidopsis lyrata subsp. lyrata]
          Length = 517

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
 Frame = +1

Query: 34  NKKLGDVTL--EFSDLCNAGLQGLLVALDRFQPGRKIRFSTYAFFWIRHYVTQAIAHDSV 207
           NK   D T   +F DLC AG++GL+ A+DRF+P RK R STY  FWIRH + +++   + 
Sbjct: 296 NKYFHDFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNF 355

Query: 208 FSLPSNISXXXXXXXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQV 351
             +P  +                  GR PT++E+   +++ PE++++V
Sbjct: 356 TRVPFGLESVRVEIFKTKTELLFELGRLPTEDEVVERLKITPERYREV 403


>ref|YP_003081530.1| RNA polymerase sigma-70 factor (RpoD) [Neorickettsia risticii str.
           Illinois] gi|506296406|ref|WP_015816181.1| RNA
           polymerase sigma factor RpoD [Neorickettsia risticii]
           gi|254589929|gb|ACT69291.1| RNA polymerase sigma-70
           factor (RpoD) [Neorickettsia risticii str. Illinois]
          Length = 620

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
 Frame = +1

Query: 37  KKLGDVTLEFSDLCNAGLQGLLVALDRFQPGRKIRFSTYAFFWIRHYVTQAIAH-DSVFS 213
           KK  +  + F DL   G  GL+ A+D+F   R  +FSTYA +W R  +T+AIA   S+  
Sbjct: 378 KKYTNRGMPFPDLIQEGNIGLMKAVDKFDHRRGHKFSTYATWWCRQAITRAIADCGSIVR 437

Query: 214 LPSNISXXXXXXXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPTKVDLEN 393
            P +I               +LNGR+PT EE+ N++++ P+K K+  K N  P  ++   
Sbjct: 438 KPVHIHETANKVMRTRRRLYNLNGREPTVEEIANLLKISPDKVKKSLKVNQDPISLESPV 497

Query: 394 IADENEGPLSWWIDN 438
             D N G    +I++
Sbjct: 498 GDDSNSGSFGDFIED 512


>ref|XP_004502613.1| PREDICTED: RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like [Cicer arietinum]
          Length = 513

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 34/100 (34%), Positives = 55/100 (55%)
 Frame = +1

Query: 64  FSDLCNAGLQGLLVALDRFQPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXX 243
           F DLC AG++GL+ A+DRF+P RK R STY+ FWIRH + +++   S   +P  +     
Sbjct: 304 FQDLCQAGVKGLITAIDRFEPNRKFRLSTYSLFWIRHAIIRSMTLSSFSRVPFGLESVRA 363

Query: 244 XXXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGN 363
                         R PT+EE+   + + PE+++ V + +
Sbjct: 364 EIRRAKLELTFELQRPPTEEEVIERVHISPERYRDVMRAS 403


>ref|XP_006578934.1| PREDICTED: RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like [Glycine max]
          Length = 509

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 33/100 (33%), Positives = 54/100 (54%)
 Frame = +1

Query: 64  FSDLCNAGLQGLLVALDRFQPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXX 243
           F DLC AG++GL+ A+DRF+P R+ R STY+ FWIRH + +++   S   +P  +     
Sbjct: 300 FQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSSFIRVPFGLESVRA 359

Query: 244 XXXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGN 363
                         R PT+EE+   + + PE++  + K +
Sbjct: 360 EIQKAKTELTFKLQRSPTEEEIIERVHISPERYHDIIKAS 399


>ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citrus clementina]
           gi|567858878|ref|XP_006422122.1| hypothetical protein
           CICLE_v10004760mg [Citrus clementina]
           gi|568874930|ref|XP_006490565.1| PREDICTED: RNA
           polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like isoform X1 [Citrus
           sinensis] gi|568874932|ref|XP_006490566.1| PREDICTED:
           RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like isoform X2 [Citrus
           sinensis] gi|568874934|ref|XP_006490567.1| PREDICTED:
           RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like isoform X3 [Citrus
           sinensis] gi|557523994|gb|ESR35361.1| hypothetical
           protein CICLE_v10004760mg [Citrus clementina]
           gi|557523995|gb|ESR35362.1| hypothetical protein
           CICLE_v10004760mg [Citrus clementina]
          Length = 513

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 38/116 (32%), Positives = 60/116 (51%)
 Frame = +1

Query: 16  YRQNFSNKKLGDVTLEFSDLCNAGLQGLLVALDRFQPGRKIRFSTYAFFWIRHYVTQAIA 195
           Y Q+F+N         F DLC AG++GL+ A+DRF+P R+ R STY  FWIRH + +++ 
Sbjct: 294 YFQDFANGP------RFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMT 347

Query: 196 HDSVFSLPSNISXXXXXXXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGN 363
             S   +P  +                   R PT EE+   + + PE++++V K +
Sbjct: 348 VSSFTRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKAS 403


>ref|XP_003602198.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
           gi|355491246|gb|AES72449.1| RNA polymerase sigma factor
           rpoD [Medicago truncatula]
          Length = 514

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 33/100 (33%), Positives = 55/100 (55%)
 Frame = +1

Query: 64  FSDLCNAGLQGLLVALDRFQPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXX 243
           F DLC AG++GL+ ++DRF+P R+ R STY+ FWIRH + +++   S   +P  +     
Sbjct: 305 FQDLCQAGVKGLITSIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLASFSRVPFGLESVRA 364

Query: 244 XXXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGN 363
                         R PT+EE+   + + PE+++ V K +
Sbjct: 365 EIRRAKIELSFQLQRSPTEEEIIEKVHVSPERYRDVMKAS 404


>gb|AFW79410.1| hypothetical protein ZEAMMB73_457711 [Zea mays]
          Length = 497

 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 39/104 (37%), Positives = 54/104 (51%)
 Frame = +1

Query: 64  FSDLCNAGLQGLLVALDRFQPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXX 243
           F +LC AG  GL+ A+DRF+P R  R STYA FWIRH + +A+   S    P  +     
Sbjct: 288 FDELCQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAMTLSSFTRFPFAMESERQ 347

Query: 244 XXXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPT 375
                        GR PT EE+R  + L P++++ V +   RPT
Sbjct: 348 EIGRAREELAFELGRPPTDEEVRARVGLSPQRYRDVLR-MARPT 390


>gb|EPS69584.1| hypothetical protein M569_05182, partial [Genlisea aurea]
          Length = 488

 Score = 72.4 bits (176), Expect = 7e-11
 Identities = 39/114 (34%), Positives = 59/114 (51%)
 Frame = +1

Query: 16  YRQNFSNKKLGDVTLEFSDLCNAGLQGLLVALDRFQPGRKIRFSTYAFFWIRHYVTQAIA 195
           Y Q+FSN        +F DLC AG++GL+ A+DRF+P RK R STY  FWIRH V +++ 
Sbjct: 268 YFQDFSNGP------KFQDLCQAGVKGLITAIDRFEPKRKSRLSTYGLFWIRHAVVRSMT 321

Query: 196 HDSVFSLPSNISXXXXXXXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWK 357
             S   +   +                   R PT EE+ N + +  E++++V +
Sbjct: 322 LSSFTKVSFGLESIRAEIQKTKMELMVKLQRRPTDEEIMNRVGISEERYREVMR 375


>gb|EMS53739.1| RNA polymerase sigma factor rpoD [Triticum urartu]
          Length = 418

 Score = 72.4 bits (176), Expect = 7e-11
 Identities = 44/116 (37%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
 Frame = +1

Query: 34  NKKLGDVTLE--FSDLCNAGLQGLLVALDRFQPGRKIRFSTYAFFWIRHYVTQAIAHDSV 207
           NK   D+T +  F+DLC AG  GL+ A+DRF+P R  R STYA FWIRH V +A+   S 
Sbjct: 198 NKYYPDMTGDERFADLCQAGANGLITAIDRFEPKRGFRISTYALFWIRHSVVRAMTLSSF 257

Query: 208 FSLPSNISXXXXXXXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPT 375
              P  +                  GR PT EE    + L P +++ V +   RPT
Sbjct: 258 TRFPFAMESERQEINRAREELSFELGRTPTDEETMKKVGLSPARYRDVVR-MTRPT 312


>gb|ESW09563.1| hypothetical protein PHAVU_009G1376001g, partial [Phaseolus
           vulgaris]
          Length = 398

 Score = 72.0 bits (175), Expect = 9e-11
 Identities = 32/93 (34%), Positives = 52/93 (55%)
 Frame = +1

Query: 64  FSDLCNAGLQGLLVALDRFQPGRKIRFSTYAFFWIRHYVTQAIAHDSVFSLPSNISXXXX 243
           F DLC +G++GL+ A+DRF+P R+ R STY+ FWIRH +T+++   S   +P  +     
Sbjct: 304 FQDLCQSGVKGLMTAIDRFEPNRRFRLSTYSLFWIRHAITRSMTLSSFTRVPFGLESVRG 363

Query: 244 XXXXXXXXXXSLNGRDPTKEELRNIMQLDPEKF 342
                         R PT+EE+   + + PE++
Sbjct: 364 EIQKAKTKLTFELQRSPTEEEIIERVNISPERY 396


>gb|EMT05926.1| RNA polymerase sigma factor rpoD [Aegilops tauschii]
          Length = 351

 Score = 72.0 bits (175), Expect = 9e-11
 Identities = 44/116 (37%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
 Frame = +1

Query: 34  NKKLGDVTLE--FSDLCNAGLQGLLVALDRFQPGRKIRFSTYAFFWIRHYVTQAIAHDSV 207
           NK   D+T +  F+DLC AG  GL+ A+DRF+P R  R STYA FWIRH V +A+   S 
Sbjct: 131 NKYYPDMTGDERFADLCQAGANGLITAIDRFEPKRGFRISTYALFWIRHSVVRAMTLSSF 190

Query: 208 FSLPSNISXXXXXXXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWKGNLRPT 375
              P  +                  GR PT EE    + L P +++ V +   RPT
Sbjct: 191 TRFPFAMESERQEINRAREELSFELGRAPTDEETMKKVGLSPARYRDVVR-MTRPT 245


>ref|XP_004234180.1| PREDICTED: RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like isoform 2 [Solanum
           lycopersicum]
          Length = 487

 Score = 72.0 bits (175), Expect = 9e-11
 Identities = 38/114 (33%), Positives = 56/114 (49%)
 Frame = +1

Query: 16  YRQNFSNKKLGDVTLEFSDLCNAGLQGLLVALDRFQPGRKIRFSTYAFFWIRHYVTQAIA 195
           Y Q+F+N         F DLC AG++GL+ A+DRF+P RK R STY  FWIRH + + + 
Sbjct: 268 YFQDFANAS------RFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRYMT 321

Query: 196 HDSVFSLPSNISXXXXXXXXXXXXXXSLNGRDPTKEELRNIMQLDPEKFKQVWK 357
             S   +P  +                   R PT +E+   +   PE++ +V K
Sbjct: 322 TSSFTKVPFGLESIRVEIQKAKLELLFELQRIPTDDEIIKRVGFSPERYHEVMK 375