BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00019274
         (551 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004955773.1| PREDICTED: protein RRP5 homolog [Setaria ita...    86   5e-15
gb|AAG51058.1|AC069473_20 rRNA biogenesis protein, putative, 3' ...    86   5e-15
dbj|BAB03107.1| pre-rRNA processing protein RRP5 [Arabidopsis th...    86   5e-15
ref|NP_187803.4| protein ribosomal RNA processing 5 [Arabidopsis...    86   5e-15
gb|AAF23213.1|AC016795_26 putative pre-rRNA processing protein, ...    86   5e-15
ref|XP_002459519.1| hypothetical protein SORBIDRAFT_02g006000 [S...    85   1e-14
ref|XP_003563778.1| PREDICTED: protein RRP5 homolog [Brachypodiu...    83   5e-14
ref|XP_004166831.1| PREDICTED: protein RRP5 homolog, partial [Cu...    82   7e-14
ref|XP_004144698.1| PREDICTED: protein RRP5 homolog [Cucumis sat...    82   7e-14
dbj|BAC79783.2| putative pre-rRNA processing protein RRP5 [Oryza...    82   7e-14
gb|EEE66766.1| hypothetical protein OsJ_23484 [Oryza sativa Japo...    82   7e-14
gb|EEC81702.1| hypothetical protein OsI_25303 [Oryza sativa Indi...    82   7e-14
ref|NP_001059139.1| Os07g0203300 [Oryza sativa Japonica Group] g...    82   7e-14
ref|XP_004234751.1| PREDICTED: protein RRP5 homolog [Solanum lyc...    82   1e-13
ref|XP_006657541.1| PREDICTED: protein RRP5 homolog [Oryza brach...    81   1e-13
ref|XP_006407387.1| hypothetical protein EUTSA_v10019877mg [Eutr...    81   2e-13
ref|XP_002884876.1| S1 RNA-binding domain-containing protein [Ar...    80   3e-13
ref|XP_002322744.2| hypothetical protein POPTR_0016s06250g [Popu...    80   3e-13
ref|XP_006296818.1| hypothetical protein CARUB_v10012800mg [Caps...    79   7e-13
gb|EOY09616.1| RNA binding,RNA binding isoform 3 [Theobroma cacao]     77   2e-12

>ref|XP_004955773.1| PREDICTED: protein RRP5 homolog [Setaria italica]
          Length = 1904

 Score = 86.3 bits (212), Expect = 5e-15
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 7/165 (4%)
 Frame = -1

Query: 500  IARNKRHQRETSAKNE----NMDKILEPQVVPGKLDGAVDELKEGSIVDGRIKKICPGID 333
            + R KR  R  +  N+    N+DKI + +         V++ K+G ++ GR++KI PG+ 
Sbjct: 1214 VNREKRLLRVKALDNQCAQHNIDKIQQSE------SSLVEQTKQGDVIGGRVQKILPGVG 1267

Query: 332  GLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRVLALKNSSSTENLVELSLRK 153
            GLV+++     GRV + E+ D +  +P+  F +G  V+C+VL++  SS     V+LSLR 
Sbjct: 1268 GLVVQIGPHLHGRVHYTEIVDSWVADPLSGFHEGQFVKCKVLSVSRSSEGSLRVDLSLRS 1327

Query: 152  LRKGHGEVTEK---NGAICNYDSVSAQVYGIDDIVPGMLVKGYVK 27
                      +    GA C       ++  I+D++PG  +KGYVK
Sbjct: 1328 SNIRTDSSNSRLFDEGATC-----IPRIEKIEDLLPGTEIKGYVK 1367


>gb|AAG51058.1|AC069473_20 rRNA biogenesis protein, putative, 3' partial; 75505-85642
            [Arabidopsis thaliana]
          Length = 1396

 Score = 86.3 bits (212), Expect = 5e-15
 Identities = 46/121 (38%), Positives = 70/121 (57%)
 Frame = -1

Query: 389  LKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRV 210
            + EG I+ GRI KI PG+ GL ++L     GRV F E+ D +  +P++ F++G  V+C+V
Sbjct: 1232 IHEGDILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQFVKCKV 1291

Query: 209  LALKNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYV 30
            L + +SS     +ELSLR    G       +  + N D+V  +   I+D+ P M V+GYV
Sbjct: 1292 LEISSSSKGTWQIELSLRTSLDGMSSADHLSEDLKNNDNVCKRFERIEDLSPDMGVQGYV 1351

Query: 29   K 27
            K
Sbjct: 1352 K 1352


>dbj|BAB03107.1| pre-rRNA processing protein RRP5 [Arabidopsis thaliana]
          Length = 1765

 Score = 86.3 bits (212), Expect = 5e-15
 Identities = 46/121 (38%), Positives = 70/121 (57%)
 Frame = -1

Query: 389  LKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRV 210
            + EG I+ GRI KI PG+ GL ++L     GRV F E+ D +  +P++ F++G  V+C+V
Sbjct: 1102 IHEGDILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQFVKCKV 1161

Query: 209  LALKNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYV 30
            L + +SS     +ELSLR    G       +  + N D+V  +   I+D+ P M V+GYV
Sbjct: 1162 LEISSSSKGTWQIELSLRTSLDGMSSADHLSEDLKNNDNVCKRFERIEDLSPDMGVQGYV 1221

Query: 29   K 27
            K
Sbjct: 1222 K 1222


>ref|NP_187803.4| protein ribosomal RNA processing 5 [Arabidopsis thaliana]
            gi|332641610|gb|AEE75131.1| protein ribosomal RNA
            processing 5 [Arabidopsis thaliana]
          Length = 1896

 Score = 86.3 bits (212), Expect = 5e-15
 Identities = 46/121 (38%), Positives = 70/121 (57%)
 Frame = -1

Query: 389  LKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRV 210
            + EG I+ GRI KI PG+ GL ++L     GRV F E+ D +  +P++ F++G  V+C+V
Sbjct: 1233 IHEGDILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQFVKCKV 1292

Query: 209  LALKNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYV 30
            L + +SS     +ELSLR    G       +  + N D+V  +   I+D+ P M V+GYV
Sbjct: 1293 LEISSSSKGTWQIELSLRTSLDGMSSADHLSEDLKNNDNVCKRFERIEDLSPDMGVQGYV 1352

Query: 29   K 27
            K
Sbjct: 1353 K 1353


>gb|AAF23213.1|AC016795_26 putative pre-rRNA processing protein, 5' partial [Arabidopsis
           thaliana]
          Length = 1111

 Score = 86.3 bits (212), Expect = 5e-15
 Identities = 46/121 (38%), Positives = 70/121 (57%)
 Frame = -1

Query: 389 LKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRV 210
           + EG I+ GRI KI PG+ GL ++L     GRV F E+ D +  +P++ F++G  V+C+V
Sbjct: 448 IHEGDILGGRISKILPGVGGLRVQLGPYVFGRVHFTEINDSWVPDPLDGFREGQFVKCKV 507

Query: 209 LALKNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYV 30
           L + +SS     +ELSLR    G       +  + N D+V  +   I+D+ P M V+GYV
Sbjct: 508 LEISSSSKGTWQIELSLRTSLDGMSSADHLSEDLKNNDNVCKRFERIEDLSPDMGVQGYV 567

Query: 29  K 27
           K
Sbjct: 568 K 568


>ref|XP_002459519.1| hypothetical protein SORBIDRAFT_02g006000 [Sorghum bicolor]
            gi|241922896|gb|EER96040.1| hypothetical protein
            SORBIDRAFT_02g006000 [Sorghum bicolor]
          Length = 1862

 Score = 85.1 bits (209), Expect = 1e-14
 Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 4/162 (2%)
 Frame = -1

Query: 500  IARNKRHQRETSAKNE----NMDKILEPQVVPGKLDGAVDELKEGSIVDGRIKKICPGID 333
            + R KR  R  +  N+    N+D+I + +          ++ K+G I+ GR++KI PG+ 
Sbjct: 1167 VNREKRLLRLKALDNQCTQLNIDEIQQSK------SSVFEQTKQGDIIGGRVQKILPGVG 1220

Query: 332  GLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRVLALKNSSSTENLVELSLRK 153
            GLV+++     GRV + E+ D +   P+  F +G  V+C+VL++  SS     V+LSLR 
Sbjct: 1221 GLVVQIGPHLRGRVHYTEIVDSWVTEPLSGFHEGQFVKCKVLSVSRSSEGSLRVDLSLRS 1280

Query: 152  LRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYVK 27
                    +  +G + +  + ++++  I D++PG  +KGYVK
Sbjct: 1281 SNLIRD--SNNSGLVDDLATCTSRIEKIKDLLPGTEIKGYVK 1320


>ref|XP_003563778.1| PREDICTED: protein RRP5 homolog [Brachypodium distachyon]
          Length = 1668

 Score = 82.8 bits (203), Expect = 5e-14
 Identities = 54/162 (33%), Positives = 83/162 (51%), Gaps = 4/162 (2%)
 Frame = -1

Query: 500  IARNKRHQRETSAKNENMDKILEPQVVPGKLDGAVDELKEGSIVDGRIKKICPGIDGLVI 321
            + R K+  R  +  N+ M K ++    P  +    +  KEG I+ GRI+KI PG+ GL+I
Sbjct: 979  VNREKKLLRLKALDNQAMLKNIDDTQKP--ISSIAEHTKEGDIIGGRIQKILPGVGGLLI 1036

Query: 320  RLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRVLALKNSSSTENLVELSLRK--LR 147
            ++     GRV + E+ D +   P+  F +G  V+C+VLA+   S     VELSLR   L 
Sbjct: 1037 QIGPHLHGRVHYTEIVDSWVPEPLSGFHEGQFVKCKVLAVSRPSEGSVRVELSLRSSILC 1096

Query: 146  KGHGEVTE--KNGAICNYDSVSAQVYGIDDIVPGMLVKGYVK 27
              H    +   + A C     + +   ++D+ PG  VKGYVK
Sbjct: 1097 TSHDPSRKLVDDSATC-----TTRFENVNDLSPGSEVKGYVK 1133


>ref|XP_004166831.1| PREDICTED: protein RRP5 homolog, partial [Cucumis sativus]
          Length = 1323

 Score = 82.4 bits (202), Expect = 7e-14
 Identities = 44/121 (36%), Positives = 72/121 (59%)
 Frame = -1

Query: 389  LKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRV 210
            L EG IV GRI KI PG+ GL++++     GRV + ELTD    +P+  +K+G  V+C+V
Sbjct: 657  LNEGDIVGGRISKILPGVGGLLVQIGPHLFGRVHYTELTDCLVPDPLSGYKEGQFVKCKV 716

Query: 209  LALKNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYV 30
            + + ++      ++LS   LR   G + +KN    N++++++    I+DI   M V+GYV
Sbjct: 717  IEITHAVKGTTHIDLS---LRSSAGILCQKNIECSNHENIASGRVKIEDIHAHMEVQGYV 773

Query: 29   K 27
            K
Sbjct: 774  K 774


>ref|XP_004144698.1| PREDICTED: protein RRP5 homolog [Cucumis sativus]
          Length = 1898

 Score = 82.4 bits (202), Expect = 7e-14
 Identities = 44/121 (36%), Positives = 72/121 (59%)
 Frame = -1

Query: 389  LKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRV 210
            L EG IV GRI KI PG+ GL++++     GRV + ELTD    +P+  +K+G  V+C+V
Sbjct: 1232 LNEGDIVGGRISKILPGVGGLLVQIGPHLFGRVHYTELTDCLVPDPLSGYKEGQFVKCKV 1291

Query: 209  LALKNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYV 30
            + + ++      ++LS   LR   G + +KN    N++++++    I+DI   M V+GYV
Sbjct: 1292 IEITHAVKGTTHIDLS---LRSSAGILCQKNIECSNHENIASGRVKIEDIHAHMEVQGYV 1348

Query: 29   K 27
            K
Sbjct: 1349 K 1349


>dbj|BAC79783.2| putative pre-rRNA processing protein RRP5 [Oryza sativa Japonica
            Group] gi|50508626|dbj|BAD31015.1| putative pre-rRNA
            processing protein RRP5 [Oryza sativa Japonica Group]
          Length = 1668

 Score = 82.4 bits (202), Expect = 7e-14
 Identities = 50/158 (31%), Positives = 84/158 (53%)
 Frame = -1

Query: 500  IARNKRHQRETSAKNENMDKILEPQVVPGKLDGAVDELKEGSIVDGRIKKICPGIDGLVI 321
            + R KR  R  +  ++++ + +     P  L   V+  K+G I+ GRI+KI PG+ GLVI
Sbjct: 981  VNREKRLLRLKALDSQSLPENIGETQKP--LSATVEHTKQGDIIGGRIQKILPGVGGLVI 1038

Query: 320  RLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRVLALKNSSSTENLVELSLRKLRKG 141
            ++     GRV + E+ D + + P+  F +G  V+C+VL +  SS     V+LSLR     
Sbjct: 1039 QIGPHLHGRVHYTEIVDSWVQEPISGFHEGQFVKCKVLDVSRSSEGSVRVDLSLRSSMCA 1098

Query: 140  HGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYVK 27
            +   + +     +    +++   I+D+ PG  VKGYVK
Sbjct: 1099 NSNQSRR--LFDDSRIRTSRFEKINDLCPGTEVKGYVK 1134


>gb|EEE66766.1| hypothetical protein OsJ_23484 [Oryza sativa Japonica Group]
          Length = 1898

 Score = 82.4 bits (202), Expect = 7e-14
 Identities = 50/158 (31%), Positives = 84/158 (53%)
 Frame = -1

Query: 500  IARNKRHQRETSAKNENMDKILEPQVVPGKLDGAVDELKEGSIVDGRIKKICPGIDGLVI 321
            + R KR  R  +  ++++ + +     P  L   V+  K+G I+ GRI+KI PG+ GLVI
Sbjct: 1218 VNREKRLLRLKALDSQSLPENIGETQKP--LSATVEHTKQGDIIGGRIQKILPGVGGLVI 1275

Query: 320  RLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRVLALKNSSSTENLVELSLRKLRKG 141
            ++     GRV + E+ D + + P+  F +G  V+C+VL +  SS     V+LSLR     
Sbjct: 1276 QIGPHLHGRVHYTEIVDSWVQEPISGFHEGQFVKCKVLDVSRSSEGSVRVDLSLRSSMCA 1335

Query: 140  HGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYVK 27
            +   + +     +    +++   I+D+ PG  VKGYVK
Sbjct: 1336 NSNQSRR--LFDDSRIRTSRFEKINDLCPGTEVKGYVK 1371


>gb|EEC81702.1| hypothetical protein OsI_25303 [Oryza sativa Indica Group]
          Length = 1848

 Score = 82.4 bits (202), Expect = 7e-14
 Identities = 50/158 (31%), Positives = 84/158 (53%)
 Frame = -1

Query: 500  IARNKRHQRETSAKNENMDKILEPQVVPGKLDGAVDELKEGSIVDGRIKKICPGIDGLVI 321
            + R KR  R  +  ++++ + +     P  L   V+  K+G I+ GRI+KI PG+ GLVI
Sbjct: 1196 VNREKRLLRLKALDSQSLPENIGETQKP--LSATVEHTKQGDIIGGRIQKILPGVGGLVI 1253

Query: 320  RLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRVLALKNSSSTENLVELSLRKLRKG 141
            ++     GRV + E+ D + + P+  F +G  V+C+VL +  SS     V+LSLR     
Sbjct: 1254 QIGPHLHGRVHYTEIVDSWVQEPISGFHEGQFVKCKVLDVSRSSEGSVRVDLSLRSSMCA 1313

Query: 140  HGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYVK 27
            +   + +     +    +++   I+D+ PG  VKGYVK
Sbjct: 1314 NSNQSRR--LFDDSRIRTSRFEKINDLCPGTEVKGYVK 1349


>ref|NP_001059139.1| Os07g0203300 [Oryza sativa Japonica Group]
           gi|113610675|dbj|BAF21053.1| Os07g0203300, partial
           [Oryza sativa Japonica Group]
          Length = 689

 Score = 82.4 bits (202), Expect = 7e-14
 Identities = 50/158 (31%), Positives = 84/158 (53%)
 Frame = -1

Query: 500 IARNKRHQRETSAKNENMDKILEPQVVPGKLDGAVDELKEGSIVDGRIKKICPGIDGLVI 321
           + R KR  R  +  ++++ + +     P  L   V+  K+G I+ GRI+KI PG+ GLVI
Sbjct: 2   VNREKRLLRLKALDSQSLPENIGETQKP--LSATVEHTKQGDIIGGRIQKILPGVGGLVI 59

Query: 320 RLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRVLALKNSSSTENLVELSLRKLRKG 141
           ++     GRV + E+ D + + P+  F +G  V+C+VL +  SS     V+LSLR     
Sbjct: 60  QIGPHLHGRVHYTEIVDSWVQEPISGFHEGQFVKCKVLDVSRSSEGSVRVDLSLRSSMCA 119

Query: 140 HGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYVK 27
           +   + +     +    +++   I+D+ PG  VKGYVK
Sbjct: 120 NSNQSRR--LFDDSRIRTSRFEKINDLCPGTEVKGYVK 155


>ref|XP_004234751.1| PREDICTED: protein RRP5 homolog [Solanum lycopersicum]
          Length = 1869

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 44/121 (36%), Positives = 70/121 (57%)
 Frame = -1

Query: 389  LKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRV 210
            ++EGS++ GRI KI PG+ GL++++D    G+V F ELTD    +P+  + +G  V+C+V
Sbjct: 1199 IREGSVLGGRISKILPGVGGLLVQIDPHLYGKVHFTELTDPGVADPLSGYHEGQFVKCKV 1258

Query: 209  LALKNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYV 30
            L +  S      ++LSLR +   H    EK  A  +  +    V  I+D+ P M+V+ YV
Sbjct: 1259 LEIAQSGKGTVHIDLSLRSI--SHKTQKEKLSAHNDTVNFPVLVEKIEDLRPNMMVQAYV 1316

Query: 29   K 27
            K
Sbjct: 1317 K 1317


>ref|XP_006657541.1| PREDICTED: protein RRP5 homolog [Oryza brachyantha]
          Length = 1705

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 4/162 (2%)
 Frame = -1

Query: 500  IARNKRHQR----ETSAKNENMDKILEPQVVPGKLDGAVDELKEGSIVDGRIKKICPGID 333
            + R KR  R    ++ ++ EN+D+  +P      +   V+  K+G I+ GRI+K+ PG+ 
Sbjct: 1019 VNREKRLLRLKVLDSQSELENIDEKQKP------VSATVEHTKQGDIIGGRIQKVLPGVG 1072

Query: 332  GLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRVLALKNSSSTENLVELSLRK 153
            GLVI++     GRV + E+ D +   P+  F +G  V+C+VL +  SS     V+LS   
Sbjct: 1073 GLVIQIGPHLHGRVHYTEIVDSWVPEPISGFHEGQFVKCKVLDVSRSSEGSVRVDLS--- 1129

Query: 152  LRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYVK 27
            LR    E + ++    + +  +++   I ++ PG  +KGYVK
Sbjct: 1130 LRSSMCENSNQSRLFNDSEICTSRFENIVNMCPGTEIKGYVK 1171


>ref|XP_006407387.1| hypothetical protein EUTSA_v10019877mg [Eutrema salsugineum]
            gi|557108533|gb|ESQ48840.1| hypothetical protein
            EUTSA_v10019877mg [Eutrema salsugineum]
          Length = 1926

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 53/166 (31%), Positives = 84/166 (50%)
 Frame = -1

Query: 524  MTLTNKDIIARNKRHQRETSAKNENMDKILEPQVVPGKLDGAVDELKEGSIVDGRIKKIC 345
            + L  + ++  +K       +K + +D       +PG  D A   + EG I+ GRI +I 
Sbjct: 1219 LRLVQRPLLDTHKSIANGGGSKTDELDS-----TIPG--DDATLFIHEGDILGGRISRIL 1271

Query: 344  PGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGSIVRCRVLALKNSSSTENLVEL 165
            P + GL +++     GRV F EL D +  NP++   +G  V+C+VL + NSS     +EL
Sbjct: 1272 PCVGGLRVQIGPYVFGRVHFTELNDSWVCNPLDGLHEGQFVKCKVLEISNSSKGTLQIEL 1331

Query: 164  SLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGMLVKGYVK 27
            SLR    G G       A  N  +V  ++  I+D+ P M ++GYVK
Sbjct: 1332 SLRASLDGMGS-NHLAEASSNNVNVCKRIERIEDLSPDMGIQGYVK 1376


>ref|XP_002884876.1| S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp.
            lyrata] gi|297330716|gb|EFH61135.1| S1 RNA-binding
            domain-containing protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1843

 Score = 80.5 bits (197), Expect = 3e-13
 Identities = 48/132 (36%), Positives = 74/132 (56%)
 Frame = -1

Query: 422  VPGKLDGAVDELKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVER 243
            +PG  DG +  + EG I+ GRI KI PG+ GL +++     GRV F E+ D +  NP++ 
Sbjct: 1164 IPGD-DGTLF-IHEGDILGGRISKILPGVGGLRVQIGPYVFGRVHFTEINDLWVPNPLDG 1221

Query: 242  FKKGSIVRCRVLALKNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDD 63
            F++G  V+C+VL + +SS     +ELSLR    G       +  + N D+V  +    +D
Sbjct: 1222 FREGQFVKCKVLEISSSSKGTWQIELSLRTSLDGMSSADHISEDLNNNDNVCKRFERFED 1281

Query: 62   IVPGMLVKGYVK 27
            +   M V+GYVK
Sbjct: 1282 LSLDMGVQGYVK 1293


>ref|XP_002322744.2| hypothetical protein POPTR_0016s06250g [Populus trichocarpa]
            gi|550320958|gb|EEF04505.2| hypothetical protein
            POPTR_0016s06250g [Populus trichocarpa]
          Length = 1856

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 2/129 (1%)
 Frame = -1

Query: 407  DGAVDELKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGS 228
            D     ++EG IV GRI KI PG+ GL+++L     GRV F EL D +  +P+  +K+G 
Sbjct: 1184 DNVTAHIREGDIVGGRISKILPGVGGLLVQLGPHIHGRVHFTELQDSWVPDPLSAYKEGQ 1243

Query: 227  IVRCRVLALKNSSSTENLVELSLRKLRKGHGEVTEKNGA--ICNYDSVSAQVYGIDDIVP 54
             V+ +VL + +       ++LSLR    G   +  +N A    N D+ S  V  I+D+ P
Sbjct: 1244 FVKSKVLEISHPVKGTIHIDLSLRLSLNG---MLGQNSAEFSNNQDAPSKHVDKIEDLQP 1300

Query: 53   GMLVKGYVK 27
             M+V+GYVK
Sbjct: 1301 DMVVQGYVK 1309


>ref|XP_006296818.1| hypothetical protein CARUB_v10012800mg [Capsella rubella]
            gi|482565527|gb|EOA29716.1| hypothetical protein
            CARUB_v10012800mg [Capsella rubella]
          Length = 1789

 Score = 79.0 bits (193), Expect = 7e-13
 Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 6/135 (4%)
 Frame = -1

Query: 413  KLDGAVDE------LKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENP 252
            KLD ++ +      + EG I+ GRI KI PGI G+ +++     GRV F E+ D +  NP
Sbjct: 1243 KLDSSIPDDDGTLFIHEGDILGGRISKILPGIGGIRVQIGPYVFGRVHFTEINDLWVPNP 1302

Query: 251  VERFKKGSIVRCRVLALKNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYG 72
            ++ F +G  V+C+VL +  SS     +ELSLR    G       +    N ++V  +   
Sbjct: 1303 LDGFHEGQFVKCKVLEISRSSKGTWQIELSLRTSLDGMNS-DHLSEDCSNNENVCKRFQR 1361

Query: 71   IDDIVPGMLVKGYVK 27
            I+D+ P M V+GYVK
Sbjct: 1362 IEDLSPDMGVQGYVK 1376


>gb|EOY09616.1| RNA binding,RNA binding isoform 3 [Theobroma cacao]
          Length = 1356

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 43/127 (33%), Positives = 69/127 (54%)
 Frame = -1

Query: 407  DGAVDELKEGSIVDGRIKKICPGIDGLVIRLDKGRCGRVQFAELTDDFPENPVERFKKGS 228
            +     + EG I+ GRI KI PG+ GL++++     GRV F EL D +  +P+  + +G 
Sbjct: 1155 ESVTTHIHEGDILGGRISKILPGVGGLLVQIGPHIFGRVHFTELKDTWESDPLSGYYEGQ 1214

Query: 227  IVRCRVLALKNSSSTENLVELSLRKLRKGHGEVTEKNGAICNYDSVSAQVYGIDDIVPGM 48
             V+C+VL + +S      ++LSLR    G       +    + DS S +V  I+D+ P M
Sbjct: 1215 FVKCKVLEISHSVKGTIHIDLSLRLSLDGM-LPNNPSELGSDEDSTSKRVEKIEDLYPNM 1273

Query: 47   LVKGYVK 27
             ++GYVK
Sbjct: 1274 AIQGYVK 1280