BLASTX nr result
ID: Ephedra25_contig00019027
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00019027
(1896 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 445 e-125
gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe... 412 e-114
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 405 e-111
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 405 e-111
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 401 e-111
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 401 e-111
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme... 407 e-111
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr... 402 e-110
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 402 e-109
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 402 e-109
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme... 390 e-108
ref|XP_006645606.1| PREDICTED: probable RNA-dependent RNA polyme... 394 e-108
ref|XP_004288888.1| PREDICTED: probable RNA-dependent RNA polyme... 390 e-108
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps... 394 e-108
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid... 393 e-108
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 388 e-107
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid... 390 e-107
gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana] 390 e-107
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme... 394 e-107
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 388 e-106
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 445 bits (1145), Expect(2) = e-125
Identities = 249/552 (45%), Positives = 340/552 (61%), Gaps = 6/552 (1%)
Frame = +3
Query: 93 LPLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNI 272
L LL Q RLFY G A+KGT+L+NK LP NTI +R SMVKVERD ++ P+ +S E+
Sbjct: 448 LHLLIQFRLFYDGCAVKGTVLVNKLLPPNTIQVRPSMVKVERDTDFSRLPSFNSFEMVGT 507
Query: 273 GQKHK-AYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDD 449
+ + A LS+ LI LL++GGVP S F L AL+D+ ++ A + Q + D
Sbjct: 508 SNRPRGAALSRYLITLLSHGGVPKSCFMFLIQAALDDVQNVRYSKKLALTAAVKYQEISD 567
Query: 450 DYTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPN 629
+ V RM+ G+P+ EP+LQ RL + + K +++GKV L NSYY+MGTADP+G+LK N
Sbjct: 568 NLLVARMIFCGLPLEEPYLQHRLSILMKEERKGLKEGKVLLPNSYYLMGTADPTGKLKGN 627
Query: 630 EVCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGKRSG 809
EVCIILDHGQ+SG VLVYR+PG HFGD+H++ ATY++++ EIVG+AKF IFFSTQG RS
Sbjct: 628 EVCIILDHGQISGKVLVYRHPGLHFGDIHVFTATYIEDLVEIVGNAKFAIFFSTQGPRSA 687
Query: 810 ADEIAGGDFDGDLYWVCINKTVLKDYKLQPSW-XXXXXXXXXXXXXTDFFPEDLEQYLFD 986
ADEIA GDFDGD+YW+ N +L +K P W ++ P++LE LFD
Sbjct: 688 ADEIANGDFDGDMYWISTNPELLHYFKAGPPWERSSSEKPPPQRKPIEYSPDELETELFD 747
Query: 987 QFLTCRFSPSNITGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDASK 1166
FL RF PS +AA+SW+ YMDRLLT ++E L +KML L D+YY+A+DA K
Sbjct: 748 LFLESRFHPSIAKCAAADSWLVYMDRLLTLGDECAEEKGCLHQKMLKLADLYYEAVDAPK 807
Query: 1167 TGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSNSDDIDETAKKT 1346
+G K+E+P +L+ ++ PH M Y STS+LG++YDL + D E
Sbjct: 808 SGKKVEVPKDLKPERYPHFMERTYQ------YTSTSILGQIYDLVASAQMDVPCE----- 856
Query: 1347 GDIVMLPDFLEETDKKTL--WMKHYEIYRSEMSNAMDSPD--SSRANDIXXXXXXXXXXA 1514
DI +LP FLEE + + W Y YR EM+ A+ S D S A+++ A
Sbjct: 857 -DIELLPCFLEEVEPSGMEKWKGLYAQYRDEMNKALSSTDQKKSNADEVIQNYKKILYGA 915
Query: 1515 DCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEKHHKNP 1694
+E ++ R +I+ EA IY + Y YA+ D+ KC FAW VAG ALCE++ K KN
Sbjct: 916 QEYEERTRPREEIFREACEIYAISYFYAKEKSDIAKCGFAWKVAGCALCELHALKQKKNS 975
Query: 1695 ILISASKLYSIL 1730
I +S L +L
Sbjct: 976 ITCLSSVLQELL 987
Score = 32.7 bits (73), Expect(2) = e-125
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2
Query: 2 EVMIHTDGTVFISEDLAEKNSK 67
+ +IHTDGT FISEDL K SK
Sbjct: 388 QCLIHTDGTGFISEDLMSKFSK 409
>gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
Length = 798
Score = 412 bits (1060), Expect(2) = e-114
Identities = 241/555 (43%), Positives = 326/555 (58%), Gaps = 10/555 (1%)
Frame = +3
Query: 96 PLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIG 275
PLL Q RLFYKG A+KGT L+NK LP TI IR SMVKVE D V+SLEI +
Sbjct: 255 PLLLQFRLFYKGRAVKGTFLINKTLPPKTIQIRPSMVKVETDPMISDDQTVNSLEIVTVS 314
Query: 276 QKHK-AYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDD 452
+ H+ + S+ LIALL +GGVP +F+ L + LED A+K+ + +DDD
Sbjct: 315 KSHRNTFFSRHLIALLCHGGVPKEYFRELLMKDLEDTRGVFCSRRAAFKVAYNHGEIDDD 374
Query: 453 YTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNE 632
Y ++M+ +GIP+ E +LQ RL + K+++KGK+ SY +MGTADP+G L+ +E
Sbjct: 375 YNSVKMILSGIPLEESYLQYRLSILKKEENKSLQKGKICSPQSYMLMGTADPTGILERDE 434
Query: 633 VCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGKRSGA 812
VCIILD GQ+SG VLVYR+PG HFGD+HL KA YVKE+E +VG+AK+ IFFS +G RS A
Sbjct: 435 VCIILDSGQMSGQVLVYRHPGLHFGDIHLLKARYVKELEYVVGNAKYAIFFSCKGPRSVA 494
Query: 813 DEIAGGDFDGDLYWVCINKTVLKDYKLQPSW--XXXXXXXXXXXXXTDFFPEDLEQYLFD 986
DE+ GGDFDGDLYWV N +L+ +K W ++ P +E L
Sbjct: 495 DEMGGGDFDGDLYWVSRNPQLLECFKPSEPWIEASSSTPKVASTRPSELLPNHIEDALIK 554
Query: 987 QFLTCRFSPSNITGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDASK 1166
FL RF PS A++SW+A MDRLL + + E + ML LVD+YY+ALDA K
Sbjct: 555 LFLKTRFEPSFAMSEASDSWLAMMDRLLILGDSSNSEKTHVKANMLRLVDLYYEALDAPK 614
Query: 1167 TGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSNSDDIDETAKKT 1346
G K+ +P EL++ PH M + Y STS+LG +YD N+ ++ + K
Sbjct: 615 KGGKVVVPGELKSNLFPHYMERVNS------YKSTSILGLIYD---TVNAYQAEDASIK- 664
Query: 1347 GDIVMLPDFLEETDKKTL--WMKHYEIYRSEMSNAMDSPDSSRAND-----IXXXXXXXX 1505
++ LP F E ++ L W +HY+ YRSEMS+AM D N+ +
Sbjct: 665 -EVKKLPMFDVEVPEECLKKWREHYQHYRSEMSSAMQDDDRDSKNNAADKVLRKYKEILY 723
Query: 1506 XXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEKHH 1685
A+ L+ S++ +I+DEA AIY+V YD+A S G V KC FAW VAG ALC+ Y K
Sbjct: 724 GGAEDLENSTRPLHEIFDEALAIYRVTYDHAISQGAVGKCCFAWKVAGSALCKYYMNKQG 783
Query: 1686 KNPILISASKLYSIL 1730
I S S L ++
Sbjct: 784 ARTIEASFSVLKDLV 798
Score = 30.0 bits (66), Expect(2) = e-114
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +2
Query: 8 MIHTDGTVFISEDLA 52
+IHTDGT FISEDLA
Sbjct: 221 LIHTDGTGFISEDLA 235
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 405 bits (1042), Expect(2) = e-111
Identities = 235/536 (43%), Positives = 320/536 (59%), Gaps = 8/536 (1%)
Frame = +3
Query: 96 PLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIG 275
PLL Q RLF G A+KGTLLLN+KLP TI IR SM+KVE D + V+S+EI
Sbjct: 402 PLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTS 461
Query: 276 -QKHKAYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDD 452
Q ++YLS+ LIALL+YGGVP+ +F L ALED + ++A + G DD
Sbjct: 462 NQPRRSYLSKYLIALLSYGGVPNEYFMNLLKDALEDAP-SVQSSKRAALRVSLRFGEMDD 520
Query: 453 YTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNE 632
V RM+ +GIP++EPFL L + + K +R GK+ +++ +Y+MGTADP+G LK +E
Sbjct: 521 SIVTRMILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDE 580
Query: 633 VCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGKRSGA 812
VCIILDHGQV G VLVY++PG HFGD+H+ ATYV+ +EE VG+AK+ IFF +G RS A
Sbjct: 581 VCIILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLA 640
Query: 813 DEIAGGDFDGDLYWVCINKTVLKDYKLQPSW-XXXXXXXXXXXXXTDFFPEDLEQYLFDQ 989
DE+A DFDGD+YWV N+ +L+ ++ W TDF P++LE LF
Sbjct: 641 DEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQL 700
Query: 990 FLTCRFSPSNITGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDASKT 1169
FLT RF S+ G AA++W+ +MDRLLT S E + L KML L DIYY ALDA K+
Sbjct: 701 FLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKS 760
Query: 1170 GSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSNSDDIDETAKKTG 1349
G K+ + EL+A+K PH M +S Y STS+LG++YD + + T
Sbjct: 761 GMKVNVSKELKAEKFPHFMGRESS------YHSTSILGQIYDA-----VESFQPENQSTK 809
Query: 1350 DIVMLPDF-LEETDKKTL--WMKHYEIYRSEMSNAMDSPDSSR---ANDIXXXXXXXXXX 1511
+I LP F ++ + L W Y+ YRSEM+ A+ ++ A ++
Sbjct: 810 EIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYG 869
Query: 1512 ADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEK 1679
A +ES +N DI+DEA AIY V Y++ + V C F W VAG ALC++Y K
Sbjct: 870 AAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRALCKLYTVK 925
Score = 25.8 bits (55), Expect(2) = e-111
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 8 MIHTDGTVFISEDLA 52
+I TDGT FISEDLA
Sbjct: 362 LILTDGTGFISEDLA 376
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 405 bits (1042), Expect(2) = e-111
Identities = 235/536 (43%), Positives = 320/536 (59%), Gaps = 8/536 (1%)
Frame = +3
Query: 96 PLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIG 275
PLL Q RLF G A+KGTLLLN+KLP TI IR SM+KVE D + V+S+EI
Sbjct: 388 PLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTS 447
Query: 276 -QKHKAYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDD 452
Q ++YLS+ LIALL+YGGVP+ +F L ALED + ++A + G DD
Sbjct: 448 NQPRRSYLSKYLIALLSYGGVPNEYFMNLLKDALEDAP-SVQSSKRAALRVSLRFGEMDD 506
Query: 453 YTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNE 632
V RM+ +GIP++EPFL L + + K +R GK+ +++ +Y+MGTADP+G LK +E
Sbjct: 507 SIVTRMILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDE 566
Query: 633 VCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGKRSGA 812
VCIILDHGQV G VLVY++PG HFGD+H+ ATYV+ +EE VG+AK+ IFF +G RS A
Sbjct: 567 VCIILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLA 626
Query: 813 DEIAGGDFDGDLYWVCINKTVLKDYKLQPSW-XXXXXXXXXXXXXTDFFPEDLEQYLFDQ 989
DE+A DFDGD+YWV N+ +L+ ++ W TDF P++LE LF
Sbjct: 627 DEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQL 686
Query: 990 FLTCRFSPSNITGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDASKT 1169
FLT RF S+ G AA++W+ +MDRLLT S E + L KML L DIYY ALDA K+
Sbjct: 687 FLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKS 746
Query: 1170 GSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSNSDDIDETAKKTG 1349
G K+ + EL+A+K PH M +S Y STS+LG++YD + + T
Sbjct: 747 GMKVNVSKELKAEKFPHFMGRESS------YHSTSILGQIYDA-----VESFQPENQSTK 795
Query: 1350 DIVMLPDF-LEETDKKTL--WMKHYEIYRSEMSNAMDSPDSSR---ANDIXXXXXXXXXX 1511
+I LP F ++ + L W Y+ YRSEM+ A+ ++ A ++
Sbjct: 796 EIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYG 855
Query: 1512 ADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEK 1679
A +ES +N DI+DEA AIY V Y++ + V C F W VAG ALC++Y K
Sbjct: 856 AAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRALCKLYTVK 911
Score = 25.8 bits (55), Expect(2) = e-111
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 8 MIHTDGTVFISEDLA 52
+I TDGT FISEDLA
Sbjct: 354 LILTDGTGFISEDLA 368
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 401 bits (1031), Expect(2) = e-111
Identities = 241/553 (43%), Positives = 338/553 (61%), Gaps = 8/553 (1%)
Frame = +3
Query: 96 PLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIG 275
PLL Q RLF G A+KGT L+NKKL T+ IR SM+KVE D + + +SLEI
Sbjct: 357 PLLIQFRLFNNGRAVKGTFLVNKKLTHQTLHIRPSMIKVETDPKLSSTFSKNSLEIVGTS 416
Query: 276 QK-HKAYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDD 452
+ K +LS+ LIALL+YGGVP+ FF + ALED ++ A ++ N G DD
Sbjct: 417 SRPKKTFLSKNLIALLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVAL-NYGDMDD 475
Query: 453 YTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNE 632
V M+ GIP+ EP+LQ RL + + K+++ GK+ + SYY+MGTADP+G L+ +E
Sbjct: 476 NIVATMIGCGIPLEEPYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDE 535
Query: 633 VCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGKRSGA 812
VCIILD GQ+SG+VL+YRNPG HFGD+H+ KATYV+E+E+ VG+AK+ IFF +G RS A
Sbjct: 536 VCIILDCGQISGEVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLA 595
Query: 813 DEIAGGDFDGDLYWVCINKTVLKDYKLQPSW-XXXXXXXXXXXXXTDFFPEDLEQYLFDQ 989
DE++GGDFDGD+++V N +L+ +K W ++F E+LE LF
Sbjct: 596 DEMSGGDFDGDMFFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKL 655
Query: 990 FLTCRFSPSNITGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDASKT 1169
FL RF PS+ G AA+SW+A MDRLLT ++E + E + LL+DIYY ALDA K
Sbjct: 656 FLRNRFQPSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKK 715
Query: 1170 GS-KIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSNSDDIDETAKKT 1346
G +IE+P L+A+ PH M N Y STS+LG++YD K+ + +D+D +
Sbjct: 716 GGRRIEVPEGLKAELFPHFMGK----NEKKTYRSTSILGKIYD-KVKA-YEDMD---LSS 766
Query: 1347 GDIVMLPDFLEETDKKTL--WMKHYEIYRSEMSNAMDSPDSS--RANDIXXXXXXXXXXA 1514
D+ LP F +E + L W + Y YR EM NA+ + + S +AN++ A
Sbjct: 767 NDVWKLPCFDDEVHELYLVKWKELYGQYRKEMRNALKAGEESNDKANEVIRKYKEFLYEA 826
Query: 1515 DCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEKHH-KN 1691
+ S + +I++EA A+YQV Y++A+S G V C FAW VAG ALC +Y K+ +
Sbjct: 827 AEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQGER 886
Query: 1692 PILISASKLYSIL 1730
P++ S S L IL
Sbjct: 887 PMICSPSALKGIL 899
Score = 29.3 bits (64), Expect(2) = e-111
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2
Query: 8 MIHTDGTVFISEDLAEKNSK 67
+IHTDGT FIS DLA K K
Sbjct: 303 LIHTDGTGFISHDLALKCPK 322
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 401 bits (1031), Expect(2) = e-111
Identities = 241/553 (43%), Positives = 338/553 (61%), Gaps = 8/553 (1%)
Frame = +3
Query: 96 PLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIG 275
PLL Q RLF G A+KGT L+NKKL T+ IR SM+KVE D + + +SLEI
Sbjct: 335 PLLIQFRLFNNGRAVKGTFLVNKKLTHQTLHIRPSMIKVETDPKLSSTFSKNSLEIVGTS 394
Query: 276 QK-HKAYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDD 452
+ K +LS+ LIALL+YGGVP+ FF + ALED ++ A ++ N G DD
Sbjct: 395 SRPKKTFLSKNLIALLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVAL-NYGDMDD 453
Query: 453 YTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNE 632
V M+ GIP+ EP+LQ RL + + K+++ GK+ + SYY+MGTADP+G L+ +E
Sbjct: 454 NIVATMIGCGIPLEEPYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDE 513
Query: 633 VCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGKRSGA 812
VCIILD GQ+SG+VL+YRNPG HFGD+H+ KATYV+E+E+ VG+AK+ IFF +G RS A
Sbjct: 514 VCIILDCGQISGEVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLA 573
Query: 813 DEIAGGDFDGDLYWVCINKTVLKDYKLQPSW-XXXXXXXXXXXXXTDFFPEDLEQYLFDQ 989
DE++GGDFDGD+++V N +L+ +K W ++F E+LE LF
Sbjct: 574 DEMSGGDFDGDMFFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKL 633
Query: 990 FLTCRFSPSNITGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDASKT 1169
FL RF PS+ G AA+SW+A MDRLLT ++E + E + LL+DIYY ALDA K
Sbjct: 634 FLRNRFQPSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKK 693
Query: 1170 GS-KIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSNSDDIDETAKKT 1346
G +IE+P L+A+ PH M N Y STS+LG++YD K+ + +D+D +
Sbjct: 694 GGRRIEVPEGLKAELFPHFMGK----NEKKTYRSTSILGKIYD-KVKA-YEDMD---LSS 744
Query: 1347 GDIVMLPDFLEETDKKTL--WMKHYEIYRSEMSNAMDSPDSS--RANDIXXXXXXXXXXA 1514
D+ LP F +E + L W + Y YR EM NA+ + + S +AN++ A
Sbjct: 745 NDVWKLPCFDDEVHELYLVKWKELYGQYRKEMRNALKAGEESNDKANEVIRKYKEFLYEA 804
Query: 1515 DCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEKHH-KN 1691
+ S + +I++EA A+YQV Y++A+S G V C FAW VAG ALC +Y K+ +
Sbjct: 805 AEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQGER 864
Query: 1692 PILISASKLYSIL 1730
P++ S S L IL
Sbjct: 865 PMICSPSALKGIL 877
Score = 29.3 bits (64), Expect(2) = e-111
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2
Query: 8 MIHTDGTVFISEDLAEKNSK 67
+IHTDGT FIS DLA K K
Sbjct: 281 LIHTDGTGFISHDLALKCPK 300
>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 1011
Score = 407 bits (1047), Expect = e-111
Identities = 240/543 (44%), Positives = 325/543 (59%), Gaps = 12/543 (2%)
Frame = +3
Query: 114 RLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIGQK-HKA 290
RLF+ G A+KGT L+N+K+ I IR SMVKVE D P DSLEI I + +KA
Sbjct: 476 RLFFNGCAVKGTFLVNRKIGSRKIHIRPSMVKVEIDPTISSIPTFDSLEIVAISHRPNKA 535
Query: 291 YLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRM 470
YLS+ LI+LL+YGGV +F L ALE+ + A K+ + +DD+ RM
Sbjct: 536 YLSKNLISLLSYGGVHKEYFMELLGSALEETKQVYLRKRAALKVAINYREMDDECLTARM 595
Query: 471 LSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNEVCIILD 650
+S+GIP+NEP L RL + +R GK+ + +S+Y+MGTADP+G L+ NEVC+ILD
Sbjct: 596 ISSGIPLNEPHLHARLSRLAKIERTKLRGGKLPISDSFYLMGTADPTGVLESNEVCVILD 655
Query: 651 HGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGKRSGADEIAGG 830
+GQVSG VLVYRNPG HFGDVH+ KA YV+E+ ++VGDAK+GIFFST+G RS A EIA G
Sbjct: 656 NGQVSGRVLVYRNPGLHFGDVHVMKARYVEELADVVGDAKYGIFFSTKGPRSAATEIANG 715
Query: 831 DFDGDLYWVCINKTVLKDYKLQPSW-XXXXXXXXXXXXXTDFFPEDLEQYLFDQFLTCRF 1007
DFDGD+YWV IN+ ++ Y W ++F ++LE LF QFL +
Sbjct: 716 DFDGDMYWVSINRKLVDSYTTSRPWIRMHSTPNAVSKKPSEFSADELEYELFRQFLEAKS 775
Query: 1008 SPSNITGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDASKTGSKIEL 1187
+N++ AA+SW+A+MDRLLT + L KML L+DIYY ALDA K+G K+ +
Sbjct: 776 KGANMS-LAADSWLAFMDRLLTLRDDNVDDMHSLKGKMLHLIDIYYDALDAPKSGKKVSI 834
Query: 1188 PNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSNSDD---IDETAKKTGDIV 1358
P+ L+A K PH M + C+ Y STS+LG++YD +DS D+ I E +K
Sbjct: 835 PHYLKANKFPHYMEKGNSCS----YHSTSILGQIYD-HVDSYPDEDLCITEISK------ 883
Query: 1359 MLPDFLEETDKK--TLWMKHYEIYRSEMSNAMDSPDSSR---ANDIXXXXXXXXXXADCL 1523
LP F E ++ TLW YE Y+ +M+ AM+ R N++ A
Sbjct: 884 -LPCFEVEIPQRCMTLWRGRYEEYKKDMTRAMNFDCELRITSCNEVIKKYKMLLYGAVEF 942
Query: 1524 DESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIY--FEKHHKNPI 1697
+++ + DI+DEA AIY V YD A+ + KC FAW VAG ALC I+ + K PI
Sbjct: 943 EQTVRKTEDIFDEALAIYHVTYDNARITYSIEKCGFAWKVAGSALCRIHAMYRKEKDLPI 1002
Query: 1698 LIS 1706
L S
Sbjct: 1003 LPS 1005
>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
gi|557110064|gb|ESQ50361.1| hypothetical protein
EUTSA_v10001897mg [Eutrema salsugineum]
Length = 988
Score = 402 bits (1032), Expect(2) = e-110
Identities = 228/545 (41%), Positives = 317/545 (58%), Gaps = 4/545 (0%)
Frame = +3
Query: 96 PLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIG 275
PLL Q R+FY G A+KGT LLNKKLPD T+ +R SM+KV +D +SLE+
Sbjct: 449 PLLIQFRMFYDGNAVKGTFLLNKKLPDRTVQVRPSMIKVSKDRALSNFSTFNSLEVVTTS 508
Query: 276 QKHK-AYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDD 452
K LS+ L+ALL+YGGVP+ FF L +E+ ++ A K N G DD
Sbjct: 509 NPPKRTKLSRNLVALLSYGGVPNEFFLDLLLNTMEETKTIFNNKRAALKAAL-NHGDMDD 567
Query: 453 YTVLRMLSAGIPVNEPFLQQRLREYLTNDIKN-IRKGKVRLDNSYYVMGTADPSGRLKPN 629
+M+ GIP++EP L+ RL L+N KN ++ G++ + SYY+MGT DP+G LK +
Sbjct: 568 QNAAQMILVGIPLDEPHLKDRL-SILSNIEKNDLKAGRLPVTESYYLMGTVDPTGELKED 626
Query: 630 EVCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGKRSG 809
EVC+IL+ GQ+SGDVLVYRNPG HFGD+H+ KATYVK +EE VG++K+ +FF +G RS
Sbjct: 627 EVCVILESGQISGDVLVYRNPGVHFGDIHVLKATYVKALEEYVGNSKYAVFFPQKGPRSL 686
Query: 810 ADEIAGGDFDGDLYWVCINKTVLKDYKLQPSW--XXXXXXXXXXXXXTDFFPEDLEQYLF 983
DEIAGGDFDGD+Y++ N +L+ +K W DF PE+LE+ LF
Sbjct: 687 GDEIAGGDFDGDMYFISRNPELLEQFKPSEPWVSLSPPSKSNSTRKPIDFSPEELEEELF 746
Query: 984 DQFLTCRFSPSNITGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDAS 1163
D FL RF SN+ G AA+SW+ MDR LT +++E + KML L+DIYY ALDA+
Sbjct: 747 DMFLKARFHSSNVIGMAADSWLTIMDRFLTLGDERAEEKAEMKRKMLSLIDIYYDALDAA 806
Query: 1164 KTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSNSDDIDETAKK 1343
K G K+ LP+ L+ PH M D + STS+LG +YD + S + + + +
Sbjct: 807 KKGVKVSLPDALKPDIFPHYMERDKK------FKSTSILGIIYDF-VQSQTAEEHTPSSE 859
Query: 1344 TGDIVMLPDFLEETDKKTLWMKHYEIYRSEMSNAMDSPDSSRANDIXXXXXXXXXXADCL 1523
+ D K Y+ YR+EM A+ + D + A+++ A
Sbjct: 860 ISKLQCFEDEPVSEFHKEKCRPWYDNYRAEMIQALSNKDDT-ASEVIEKYKQEFYGAAGF 918
Query: 1524 DESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEKHHKNPILI 1703
++S K+ ++Y +A A+Y +VYDYA + VRKC FAW VAG LC Y +K +L
Sbjct: 919 EDSKKSLEELYPQALALYNIVYDYAIEMKSVRKCGFAWKVAGPVLCRFYLKKTGGKALLC 978
Query: 1704 SASKL 1718
S S L
Sbjct: 979 SLSML 983
Score = 26.2 bits (56), Expect(2) = e-110
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 2 EVMIHTDGTVFISEDLA 52
E +H+DGT +ISEDLA
Sbjct: 406 EPRMHSDGTGYISEDLA 422
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 402 bits (1034), Expect = e-109
Identities = 238/550 (43%), Positives = 319/550 (58%), Gaps = 6/550 (1%)
Frame = +3
Query: 96 PLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIG 275
PLL Q+RLFY G A+KGTLLLNKKLP TI IR SM+KV+ D + +SLE+
Sbjct: 469 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 528
Query: 276 -QKHKAYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDD 452
Q K YLS+ LIALL+YGGVP+ FF + AL+D ++ A K+ G+D D
Sbjct: 529 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD 588
Query: 453 YTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNE 632
+T RM+ +GI ++EP+LQ RL + + K+++ GK+ + SYY+MGT DP+G LK NE
Sbjct: 589 FTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNE 648
Query: 633 VCIILDHGQVSGD-VLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGKRSG 809
VCIIL GQVS + VLVYRNPG HFGD+H+ KATYVKE+E+ VG +K+ IFF G RS
Sbjct: 649 VCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSL 708
Query: 810 ADEIAGGDFDGDLYWVCINKTVLKDYKLQPSWXXXXXXXXXXXXXTDFFPEDLEQYLFDQ 989
ADEIAGGDFDGD+Y+V N +LK +K W DF E+LE LF
Sbjct: 709 ADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRPIDFSLEELESELFKL 768
Query: 990 FLTCRFSPSNITGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDA-SK 1166
FL RF PSN AA+ W A MDR LT ++E + E ML L++IYY ALDA K
Sbjct: 769 FLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKK 828
Query: 1167 TGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSNSDDIDETAKKT 1346
+G K+E+P +L+ +K P M D + + STS+LG +Y+ + + +D + +
Sbjct: 829 SGIKVEVPEDLKVEKFPCYMRRDESVSFE----STSVLGTIYNTV--KSYEAVDRSVTEI 882
Query: 1347 GDIVMLPDFLEETDKKTLWMKHYEIYRSEMSNAMDSPDSSR---ANDIXXXXXXXXXXAD 1517
+ D + E T W +Y+ YR EM A+D R A + A
Sbjct: 883 WKLPCFDDGVPEA-CMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAA 941
Query: 1518 CLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEKHHKNPI 1697
++S++ +IY+EA AIY + YD A S V C FAW VAG AL + Y + +
Sbjct: 942 EFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSM 1001
Query: 1698 LISASKLYSI 1727
L SAS L I
Sbjct: 1002 LCSASVLREI 1011
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 402 bits (1034), Expect = e-109
Identities = 238/550 (43%), Positives = 319/550 (58%), Gaps = 6/550 (1%)
Frame = +3
Query: 96 PLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIG 275
PLL Q+RLFY G A+KGTLLLNKKLP TI IR SM+KV+ D + +SLE+
Sbjct: 471 PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 530
Query: 276 -QKHKAYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDD 452
Q K YLS+ LIALL+YGGVP+ FF + AL+D ++ A K+ G+D D
Sbjct: 531 NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD 590
Query: 453 YTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNE 632
+T RM+ +GI ++EP+LQ RL + + K+++ GK+ + SYY+MGT DP+G LK NE
Sbjct: 591 FTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNE 650
Query: 633 VCIILDHGQVSGD-VLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGKRSG 809
VCIIL GQVS + VLVYRNPG HFGD+H+ KATYVKE+E+ VG +K+ IFF G RS
Sbjct: 651 VCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSL 710
Query: 810 ADEIAGGDFDGDLYWVCINKTVLKDYKLQPSWXXXXXXXXXXXXXTDFFPEDLEQYLFDQ 989
ADEIAGGDFDGD+Y+V N +LK +K W DF E+LE LF
Sbjct: 711 ADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKRPIDFSLEELESELFKL 770
Query: 990 FLTCRFSPSNITGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDA-SK 1166
FL RF PSN AA+ W A MDR LT ++E + E ML L++IYY ALDA K
Sbjct: 771 FLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKK 830
Query: 1167 TGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSNSDDIDETAKKT 1346
+G K+E+P +L+ +K P M D + + STS+LG +Y+ + + +D + +
Sbjct: 831 SGIKVEVPEDLKVEKFPCYMRRDESVSFE----STSVLGTIYNTV--KSYEAVDRSVTEI 884
Query: 1347 GDIVMLPDFLEETDKKTLWMKHYEIYRSEMSNAMDSPDSSR---ANDIXXXXXXXXXXAD 1517
+ D + E T W +Y+ YR EM A+D R A + A
Sbjct: 885 WKLPCFDDGVPEA-CMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAA 943
Query: 1518 CLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEKHHKNPI 1697
++S++ +IY+EA AIY + YD A S V C FAW VAG AL + Y + +
Sbjct: 944 EFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARRQGDRSM 1003
Query: 1698 LISASKLYSI 1727
L SAS L I
Sbjct: 1004 LCSASVLREI 1013
>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
vesca subsp. vesca]
Length = 1405
Score = 390 bits (1003), Expect(2) = e-108
Identities = 233/555 (41%), Positives = 327/555 (58%), Gaps = 10/555 (1%)
Frame = +3
Query: 96 PLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIG 275
PLL Q RLF+ G A KGTLL+NKKL N I IR SM+KV+ D + ++SLEI
Sbjct: 866 PLLIQCRLFHNGSASKGTLLVNKKLQPNRIQIRPSMLKVKTDPVISNNQTLNSLEIVGTS 925
Query: 276 QKHK-AYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDD 452
+ +LS+ LIALL +GGVP+ FF + +ALED + A K+ ++ +DD+
Sbjct: 926 TPPRNTHLSRILIALLVHGGVPEEFFMQILNKALEDSHGVFCKKRAALKVAEKYGEMDDN 985
Query: 453 YTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNE 632
+ M+S GIP+ E +L+ RL + + ++RKG++ + +SY +MGTADP+G LK +E
Sbjct: 986 FLGRLMISFGIPLEESYLRYRLSVLMKEENNSLRKGRLYIPDSYNLMGTADPTGTLKEDE 1045
Query: 633 VCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGKRSGA 812
VC GQ+SG VLVYR PG H GD+H+ KATYVKEIE IVG+AK+GIFFS +G RS A
Sbjct: 1046 VC----DGQLSGKVLVYRYPGLHIGDIHVLKATYVKEIEYIVGNAKYGIFFSCKGPRSIA 1101
Query: 813 DEIAGGDFDGDLYWVCINKTVLKDYKLQPSW--XXXXXXXXXXXXXTDFFPEDLEQYLFD 986
DE+ GGDFDGDLYWV N +L+ YK W +D PEDLE LF
Sbjct: 1102 DEMGGGDFDGDLYWVSRNPQLLEWYKPSEPWIEASISTKKNPSRCPSDHSPEDLEDVLFR 1161
Query: 987 QFLTCRFSPSNITGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDASK 1166
FLT RF PS AA++W+A+MD LT + E + + EK+L LVD+YY ALDA+K
Sbjct: 1162 SFLTTRFEPSFAMSEAADNWLAWMDHFLTLGDSNIHEKNNVKEKILQLVDLYYTALDAAK 1221
Query: 1167 TGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSNSDDIDETAKKT 1346
G K+++P EL+ PH M + Y STS+LG +Y+ + ++D +
Sbjct: 1222 KGVKVDVPKELKVSCFPHYMGKNRS------YPSTSILGSIYNRVDEHQTED-----RSL 1270
Query: 1347 GDIVMLPDFLE-ETDKKTL--WMKHYEIYRSEMSNAMDSPDSSRAND----IXXXXXXXX 1505
++ LP F E E L W + + YR EM++A+D D N +
Sbjct: 1271 KEVEKLPAFDENEVPDACLDKWAELHRQYRKEMASALDDDDKQSKNQSADVVIRKYRKIL 1330
Query: 1506 XXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEKHH 1685
A+ +ES + +IY+EA AIY V YD+A+ +G+V+ C FAW VAG+ALC+++ ++
Sbjct: 1331 YEANDFEESRRPIEEIYNEAHAIYHVCYDHAKRVGNVKVCSFAWRVAGKALCQLHARNNN 1390
Query: 1686 KNPILISASKLYSIL 1730
+ I +S L IL
Sbjct: 1391 ERFCTIVSSVLMEIL 1405
Score = 31.6 bits (70), Expect(2) = e-108
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2
Query: 8 MIHTDGTVFISEDLAEKNSKVE 73
+IHTDGT FISEDLA K+E
Sbjct: 809 LIHTDGTGFISEDLALLCPKIE 830
>ref|XP_006645606.1| PREDICTED: probable RNA-dependent RNA polymerase 4-like [Oryza
brachyantha]
Length = 1004
Score = 394 bits (1011), Expect(2) = e-108
Identities = 231/577 (40%), Positives = 331/577 (57%), Gaps = 34/577 (5%)
Frame = +3
Query: 96 PLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIG 275
PLL Q+RLFY G A+KGT+L++K+L TI+IR SMVK++ D +V+S EI +
Sbjct: 429 PLLIQLRLFYNGSAVKGTVLVDKRLSPGTILIRPSMVKIKTDPKLSSIHSVNSFEIVSAR 488
Query: 276 QKHKAY----------------------LSQTLIALLNYGGVPDSFFKALTWRALEDLSI 389
K+ S+ LIALL+YGGVP+ FF L A+ED
Sbjct: 489 NAKKSLSDVQFVNSFEIVSTSNRPRRTSTSRILIALLHYGGVPEEFFMELLQNAIEDAEN 548
Query: 390 KCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVR 569
D A + ++D + RM+ AGIP++E +LQ RL + K I++GK+
Sbjct: 549 ARFDYGDALNIAFSYADMEDSMSA-RMILAGIPLDELYLQSRLTFMAKQERKGIKEGKIP 607
Query: 570 LDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIE 749
+DN YY+MGTADP+G L PNEVC+ILD+GQ+SGDVLVY++PG HFGD+H+ KATY+ +E
Sbjct: 608 IDNCYYLMGTADPTGILAPNEVCVILDNGQLSGDVLVYKHPGLHFGDIHVLKATYIPGLE 667
Query: 750 EIVGDAKFGIFFSTQGKRSGADEIAGGDFDGDLYWVCINKTVLKDYKLQPSW---XXXXX 920
E+VG +K+ I F T G+RS ADE+A DFDGD++W+ IN +L+ +K +W
Sbjct: 668 EVVGCSKYVILFPTTGQRSLADEMANSDFDGDIFWISINPKLLEHFKPSKAWEWEQAITP 727
Query: 921 XXXXXXXXTDFFPEDLEQYLFDQFLTCRFSPSNITGSAANSWMAYMDRLLTPIVAKSKEA 1100
DF +LE+ LF +FL RF+PS +A+N+W+ YMDRLLT V +S E
Sbjct: 728 KEAKQMGPQDFNESELERLLFHEFLKARFAPSYALATASNNWLVYMDRLLTDPVDES-EK 786
Query: 1101 DLLTEKMLLLVDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLL 1280
+L+ EKML LVD+YY ALDA K+G K+ +P++L ++ PH M S Y S+S+L
Sbjct: 787 ELIKEKMLKLVDLYYVALDAPKSGKKVNIPSDLMVKQYPHFMGRSSS------YHSSSIL 840
Query: 1281 GELYDLKLDSNSDDIDETAKKTGDIVMLPDFLEETDK---KTLWMKHYEIYRSEMS---- 1439
G+LYD D+N D + I +LP F E K LW + Y Y S+ S
Sbjct: 841 GKLYDKADDANLLRFDNV--QPIGISLLPCFTERVAPPTIKNLWQRRYNEYLSDSSKLLN 898
Query: 1440 -NAMDSPDSS-RANDIXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGD 1613
A+D + + + ++ A +E+ +N D++ +A AIYQ+VY+ A+
Sbjct: 899 DKAVDKEEKNMKFEELYKKYKHMLYDASEFEETPRNFGDVFTDACAIYQIVYEKARRENA 958
Query: 1614 VRKCRFAWFVAGEALCEIYFEKHHKNPILISASKLYS 1724
+C FAW VAG ALC Y K+ + ++ S L S
Sbjct: 959 AARCCFAWNVAGRALCHYYALKNEGDTVVCSLPLLRS 995
Score = 28.5 bits (62), Expect(2) = e-108
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 2 EVMIHTDGTVFISEDLAEK 58
E +IHTDGT IS+DLA K
Sbjct: 377 EPLIHTDGTGLISQDLALK 395
>ref|XP_004288888.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
vesca subsp. vesca]
Length = 1068
Score = 390 bits (1003), Expect(2) = e-108
Identities = 238/563 (42%), Positives = 328/563 (58%), Gaps = 18/563 (3%)
Frame = +3
Query: 96 PLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEI-CNI 272
PLL Q RLF++G A KGT +NK LP T+ IR SM+KVE+D + + ++SLEI C
Sbjct: 517 PLLIQCRLFHEGTAAKGTFTVNKLLPPKTLQIRPSMIKVEKDPKFSDTNTINSLEIVCTS 576
Query: 273 GQKHKAYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDD 452
KAYLS+T+IALL YGGVP F + A+ED A K+ ++ G+DD
Sbjct: 577 APPMKAYLSRTIIALLVYGGVPKDLFMKILENAVEDAHHVISKTRAALKVAEKYGGIDD- 635
Query: 453 YTVLRMLSAGIPVNEPFLQQRLREYLT-NDIKNIRKGKVRLDNSYYVMGTADPSGRLKPN 629
+ V M+ GIP+ E +LQ RL L + +RKG++ + +++ +MGTADP+G L+ +
Sbjct: 636 FLVETMIRLGIPIEESYLQYRLSCLLRLQEGTGLRKGRLPIPDTFMLMGTADPTGTLERD 695
Query: 630 EVCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGKRSG 809
EVC+IL GQ+SG VLVYR+PG+HFGD+ + KATYVKE+E +VGDA++ IFFS +G R+
Sbjct: 696 EVCVILKDGQLSGTVLVYRHPGQHFGDIKVLKATYVKELESVVGDARYAIFFSCKGPRNV 755
Query: 810 ADEIAGGDFDGDLYWVCINKTVLKDYKLQPSW--XXXXXXXXXXXXXTDFFPEDLEQYLF 983
ADEIAGGDFDGDLYWV N +LK YK W T+ E+L+ +F
Sbjct: 756 ADEIAGGDFDGDLYWVSRNPQLLKWYKPSEPWNEGEVATQKVDSKRPTELSDEELQAEMF 815
Query: 984 DQFLTCRFSPSNITGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDAS 1163
FL RF P TG AAN+W+A MD+ LT + S+E + K+L LVDIYY ALDA+
Sbjct: 816 RLFLKNRFQPCFATGEAANNWIALMDKFLT--LGDSQEKKDIMNKILRLVDIYYIALDAA 873
Query: 1164 KTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYD--LKLDSNSDDIDETA 1337
K G K+E+P +L+ + PH M+ + + S+S+LGE+YD K + + E
Sbjct: 874 KKGVKVEVPKDLKVPRFPHYMDKLKE---EKTETSSSILGEIYDGVGKCQAKLAFLTEIK 930
Query: 1338 K-KTGDIVMLPDFLEETDKKTLWMKHYEIYRSEMSNAMDSPDSSRANDIXXXXXXXXXXA 1514
K DI +P+ W K YE YR EMS+AM + + +A A
Sbjct: 931 KLPIFDINQVPEHCLNN-----WRKLYEQYRGEMSSAMKNANKDQAASSVIGYYKEVIIA 985
Query: 1515 DC-----------LDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALC 1661
+ SSK I DEA AIY V YDYA + DV++C FAW VAG+ALC
Sbjct: 986 TLFLGLKLYDAADFEHSSKPIDAILDEAHAIYHVCYDYAINKRDVQRCSFAWKVAGKALC 1045
Query: 1662 EIYFEKHHKNPILISASKLYSIL 1730
E++ +K + + I+ S L +L
Sbjct: 1046 ELHAKKTGEKWLSIAPSVLQQLL 1068
Score = 30.4 bits (67), Expect(2) = e-108
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2
Query: 2 EVMIHTDGTVFISEDLA 52
+ +IHTDGT FISEDLA
Sbjct: 460 KALIHTDGTGFISEDLA 476
>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
gi|482565615|gb|EOA29804.1| hypothetical protein
CARUB_v10012898mg [Capsella rubella]
Length = 982
Score = 394 bits (1011), Expect(2) = e-108
Identities = 227/551 (41%), Positives = 318/551 (57%), Gaps = 7/551 (1%)
Frame = +3
Query: 96 PLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIG 275
PLL Q R+FY G+AIKGT LLNKK+P T+ +R SM+KV D S ++LE+ N
Sbjct: 445 PLLIQFRMFYNGYAIKGTFLLNKKIPSRTVQVRPSMIKVLPDSLPNIS-TFNTLEVVNTS 503
Query: 276 QKHK-AYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDD 452
K LS+ L+ALL+YGG+PD FF + LE+ ++ A + G DD
Sbjct: 504 FPPKRTKLSRNLVALLSYGGIPDEFFLDILHNTLEESKAIFYNKRAALNAAL-SYGEMDD 562
Query: 453 YTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNE 632
+M+ AGIP++EP L+ L +L + +++ G++ + SYY+MGT DP+G LK +E
Sbjct: 563 QNAAQMILAGIPLDEPHLKTCLSSFLKREKNDLKAGRLPVTESYYLMGTVDPTGELKEDE 622
Query: 633 VCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGKRSGA 812
VC+IL+ GQ+SG+VLVYRNPG HFGD+H+ KATYVK +EE VG++KF +FF +G RS
Sbjct: 623 VCVILESGQISGEVLVYRNPGLHFGDIHVLKATYVKALEEYVGNSKFAVFFPQKGPRSLG 682
Query: 813 DEIAGGDFDGDLYWVCINKTVLKDYKLQPSW--XXXXXXXXXXXXXTDFFPEDLEQYLFD 986
DEIAGGDFDGD+Y++ N +L+ +K W F PE+LE+ LF+
Sbjct: 683 DEIAGGDFDGDIYFISRNPELLEHFKPSEPWVSLTPPSKSNSARGPCQFSPEELEEELFE 742
Query: 987 QFLTCRFSPSNITGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDASK 1166
FL F SN+ G AA+SW+ MDR L + E + +KML L+DIYY ALDA K
Sbjct: 743 MFLKAGFHASNVIGMAADSWLTIMDRFLILGDESADEKAEMKQKMLELIDIYYDALDAPK 802
Query: 1167 TGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSNSDDIDETAKKT 1346
G+K+ LPNELR PH M D + STS+LG +YD + +
Sbjct: 803 KGAKVYLPNELRPDIFPHYMERDKK------FKSTSILGLIYDFVQSQTT----KQPSPP 852
Query: 1347 GDIVMLPDFLEETDKKTLWMKH----YEIYRSEMSNAMDSPDSSRANDIXXXXXXXXXXA 1514
+I LP F E+ MK Y+ Y+ EM++AM++ D+S N+I A
Sbjct: 853 SEINKLPCF-EDEPVSEFHMKECRRWYDEYKDEMTHAMNT-DASNKNEIIERCKEDFYGA 910
Query: 1515 DCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEKHHKNP 1694
+ES K+ ++Y +A A+Y +VYD+A G V +C F W VAG LC Y +K H+
Sbjct: 911 ASFEESKKSLEELYPQALALYNIVYDHATHAG-VSRCGFVWKVAGPVLCRFYLKKRHEKT 969
Query: 1695 ILISASKLYSI 1727
++ S S L I
Sbjct: 970 LVSSPSVLKEI 980
Score = 27.3 bits (59), Expect(2) = e-108
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +2
Query: 11 IHTDGTVFISEDLAE 55
IH+DGT +ISEDLA+
Sbjct: 405 IHSDGTGYISEDLAQ 419
>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
polymerase 5 [Arabidopsis thaliana]
Length = 977
Score = 393 bits (1010), Expect(2) = e-108
Identities = 222/547 (40%), Positives = 315/547 (57%), Gaps = 9/547 (1%)
Frame = +3
Query: 96 PLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIG 275
PLL Q R+FY G+A+KGT LLNKKL T+ +R SM+KV +D + ++LE+
Sbjct: 437 PLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTS 496
Query: 276 QKHK-AYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDD 452
K LS+ L+ALL+YGG+P+ FF + LE+ S ++A N G DD
Sbjct: 497 NPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEE-SKSIFYNKRAALNAALNYGEMDD 555
Query: 453 YTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNE 632
+M+ GIP++EP L+ L L + +++ GK+ + SYY+MGT DP+G LK +E
Sbjct: 556 QNAAQMILVGIPLDEPHLKNYLSILLKTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDE 615
Query: 633 VCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGKRSGA 812
VC+IL+ GQ+SG+VLVYRNPG HFGD+H+ KATYVK +EE VG++KF +FF +G RS
Sbjct: 616 VCVILESGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLG 675
Query: 813 DEIAGGDFDGDLYWVCINKTVLKDYKLQPSW--XXXXXXXXXXXXXTDFFPEDLEQYLFD 986
DEIAGGDFDGD+Y++ N +L+++K W + PE+LE+ LF+
Sbjct: 676 DEIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFE 735
Query: 987 QFLTCRFSPSNITGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLVDIYYKALDASK 1166
FLT F SN+ G AA+SW+ MDR L +++E + +KML L+DIYY ALDA K
Sbjct: 736 MFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPK 795
Query: 1167 TGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSNSDDIDETAKKT 1346
G K+ LPN+L+ PH M D + STS+LG ++D + E +
Sbjct: 796 KGDKVYLPNKLKPDIFPHYMERDKK------FQSTSILGLIFDFVKSQTT----EEPSPS 845
Query: 1347 GDIVMLPDFLEE------TDKKTLWMKHYEIYRSEMSNAMDSPDSSRANDIXXXXXXXXX 1508
+I LP F +E K LW Y+ YR+EM+ AM + AN++
Sbjct: 846 SEISKLPCFEDEPVSEFHMQKCRLW---YDNYRTEMTQAMKTDKDESANEVIQRYKQEFY 902
Query: 1509 XADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEKHHK 1688
A ++S K+ ++Y +A A+Y++VYDYA G V KCRF W VAG LC Y K +
Sbjct: 903 GAAGFEDSKKSLEELYPQALALYKIVYDYAIHAG-VSKCRFVWKVAGPVLCRFYLNKKMQ 961
Query: 1689 NPILISA 1709
L+ A
Sbjct: 962 EKCLVCA 968
Score = 26.6 bits (57), Expect(2) = e-108
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 11 IHTDGTVFISEDLA 52
IH+DGT +ISEDLA
Sbjct: 397 IHSDGTGYISEDLA 410
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 388 bits (996), Expect(2) = e-107
Identities = 239/561 (42%), Positives = 328/561 (58%), Gaps = 8/561 (1%)
Frame = +3
Query: 72 KNPSC--EVLPLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPA 245
+NP C PLL Q RLF G A+KGT L+NKKL T+ +R SM+KVE D + +
Sbjct: 325 QNPECLHGDPPLLIQFRLFNNGRAVKGTFLVNKKLNHRTLHVRPSMIKVETDPKLSNTFS 384
Query: 246 VDSLEICNIG-QKHKAYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKL 422
+SLEI + K +LS+ LIALL+YGGVP+ FF + ALED +KA
Sbjct: 385 KNSLEIVGTSCRPKKTFLSKNLIALLSYGGVPEEFFMGILNNALEDAH-GILSNKKAALR 443
Query: 423 LKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTA 602
+ N G DD V M+ GIP+ EP+LQ L + K+++ GK+ + SYY+MGTA
Sbjct: 444 VALNYGDMDDNIVATMIGCGIPLEEPYLQHHLSILKKEEKKSLKGGKIPVPESYYLMGTA 503
Query: 603 DPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIF 782
DP+G L+ +EVCIILD GQVSG+VLVYRNPG HFGD+H+ KATYV+E+E+ VG+AK+ IF
Sbjct: 504 DPTGLLESDEVCIILDCGQVSGEVLVYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIF 563
Query: 783 FSTQGKRSGADEIAGGDFDGDLYWVCINKTVLKDYKLQPSW-XXXXXXXXXXXXXTDFFP 959
F +G RS ADE++GGDFDGD+++V N +L+++K W ++F
Sbjct: 564 FPCKGPRSLADEMSGGDFDGDMFFVSRNPRLLENFKQTEPWTPSTSTPNVPNRKPSEFSD 623
Query: 960 EDLEQYLFDQFLTCRFSPSNITGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLVDI 1139
E+LE LF FL RF PS G AA+SW+A MDRLLT ++E + + + LL+DI
Sbjct: 624 EELEVELFKLFLRNRFQPSFTVGVAADSWLAMMDRLLTLGNDCTEEIACVKKNINLLIDI 683
Query: 1140 YYKALDASKTGS-KIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSNS 1316
YY ALDA K G KIE+P L+A+ PH M Y STS+LG++YD
Sbjct: 684 YYDALDAPKKGGRKIEVPEALKAELFPHFMEKHE----KKTYRSTSILGKIYD------- 732
Query: 1317 DDIDETAKKTGDIVMLPDFLEETDKKTLWMKHYEIYRSEMSNAMDS--PDSSRANDIXXX 1490
K D+ + + E K W Y YR+EM NA+ + ++ AN++
Sbjct: 733 -----KVKAYEDMDLSSNVHESCLVK--WKGLYGQYRTEMRNALQAGKEKNNEANEVIKK 785
Query: 1491 XXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIY 1670
A + S + +I++EARA+YQV Y++A+ G V KC FAW VAG ALC +Y
Sbjct: 786 YKEILYEAAEFNLSRRRDEEIFEEARALYQVTYNHAKRQGAVGKCGFAWRVAGLALCTLY 845
Query: 1671 FEKH-HKNPILISASKLYSIL 1730
K+ + P++ S S L IL
Sbjct: 846 VLKNQEERPLICSPSALKGIL 866
Score = 29.3 bits (64), Expect(2) = e-107
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2
Query: 8 MIHTDGTVFISEDLAEKNSK 67
+IHTDGT FIS DLA K K
Sbjct: 281 LIHTDGTGFISHDLALKCPK 300
>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
polymerase 3 [Arabidopsis thaliana]
Length = 992
Score = 390 bits (1002), Expect(2) = e-107
Identities = 231/566 (40%), Positives = 319/566 (56%), Gaps = 13/566 (2%)
Frame = +3
Query: 72 KNPSCEVLPLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVD 251
+ P + PLL Q R+FY G+A+KGT L NKKLP T+ +R SM+KV D +
Sbjct: 442 QGPCGQEPPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFN 501
Query: 252 SLEICNIGQK-HKAYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLK 428
SLE+ KA LS+ L+ALL+YGGVP+ FF + LE+ E A+K
Sbjct: 502 SLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAI 561
Query: 429 QNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADP 608
N G DD YT M+ GIP++EP+L+ RL L + ++ G+ +D SYY+MGT DP
Sbjct: 562 -NYG-DDQYTA-DMILVGIPLDEPYLKDRLSYLLKTERNALKAGRFPIDESYYIMGTVDP 618
Query: 609 SGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFS 788
+G LK NE+C+IL GQ+SGDVLVYRNPG HFGD+H+ KATYVK +E+ VG+AKF +FF
Sbjct: 619 TGELKENEICVILHSGQISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFP 678
Query: 789 TQGKRSGADEIAGGDFDGDLYWVCINKTVLKDYKLQPSW--XXXXXXXXXXXXXTDFFPE 962
+G RS DEIAGGDFDGD+Y++ N +L+ +K W ++ E
Sbjct: 679 QKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEE 738
Query: 963 DLEQYLFDQFLTCRFSPSNITGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLVDIY 1142
+LE+ LF FL RF ++ G AA+ W+ MD LT +KE + +L L+DIY
Sbjct: 739 ELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIY 798
Query: 1143 YKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSNSDD 1322
Y ALDA K G+K++LP +L + PH M D + + STS+LG ++D N+++
Sbjct: 799 YDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRD----FRSTSILGLIFDTVDSHNAEE 854
Query: 1323 IDETAKKTGDIVMLPDFLEE------TDKKTLWMKHYEIYRSEMSNAMDSPDSSR----A 1472
+I L F +E DK T W YE YRSEMS AM D +
Sbjct: 855 -----PPPSEISKLWYFEDEPVPKSHMDKFTSW---YENYRSEMSQAMMETDKVKRNQLT 906
Query: 1473 NDIXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGE 1652
N++ A ++S+K+ ++Y +A A+Y VVYDYA G V KC FAW VAG
Sbjct: 907 NEVIQRYKQDFYGAAGFEDSNKSLEELYPQALALYNVVYDYAIQEG-VAKCTFAWNVAGP 965
Query: 1653 ALCEIYFEKHHKNPILISASKLYSIL 1730
LC+ Y +K ++ S S L +L
Sbjct: 966 VLCKFYLKKTKDKSVVASTSVLKKLL 991
Score = 26.6 bits (57), Expect(2) = e-107
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 11 IHTDGTVFISEDLA 52
IH+DGT +ISEDLA
Sbjct: 401 IHSDGTGYISEDLA 414
>gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
Length = 966
Score = 390 bits (1002), Expect(2) = e-107
Identities = 231/566 (40%), Positives = 319/566 (56%), Gaps = 13/566 (2%)
Frame = +3
Query: 72 KNPSCEVLPLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVD 251
+ P + PLL Q R+FY G+A+KGT L NKKLP T+ +R SM+KV D +
Sbjct: 416 QGPCGQEPPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFN 475
Query: 252 SLEICNIGQK-HKAYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLK 428
SLE+ KA LS+ L+ALL+YGGVP+ FF + LE+ E A+K
Sbjct: 476 SLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAI 535
Query: 429 QNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADP 608
N G DD YT M+ GIP++EP+L+ RL L + ++ G+ +D SYY+MGT DP
Sbjct: 536 -NYG-DDQYTA-DMILVGIPLDEPYLKDRLSYLLKTERNALKAGRFPIDESYYIMGTVDP 592
Query: 609 SGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFS 788
+G LK NE+C+IL GQ+SGDVLVYRNPG HFGD+H+ KATYVK +E+ VG+AKF +FF
Sbjct: 593 TGELKENEICVILHSGQISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFP 652
Query: 789 TQGKRSGADEIAGGDFDGDLYWVCINKTVLKDYKLQPSW--XXXXXXXXXXXXXTDFFPE 962
+G RS DEIAGGDFDGD+Y++ N +L+ +K W ++ E
Sbjct: 653 QKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEE 712
Query: 963 DLEQYLFDQFLTCRFSPSNITGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLVDIY 1142
+LE+ LF FL RF ++ G AA+ W+ MD LT +KE + +L L+DIY
Sbjct: 713 ELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIY 772
Query: 1143 YKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSNSDD 1322
Y ALDA K G+K++LP +L + PH M D + + STS+LG ++D N+++
Sbjct: 773 YDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRD----FRSTSILGLIFDTVDSHNAEE 828
Query: 1323 IDETAKKTGDIVMLPDFLEE------TDKKTLWMKHYEIYRSEMSNAMDSPDSSR----A 1472
+I L F +E DK T W YE YRSEMS AM D +
Sbjct: 829 -----PPPSEISKLWYFEDEPVPKSHMDKFTSW---YENYRSEMSQAMMETDKVKRNQLT 880
Query: 1473 NDIXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGE 1652
N++ A ++S+K+ ++Y +A A+Y VVYDYA G V KC FAW VAG
Sbjct: 881 NEVIQRYKQDFYGAAGFEDSNKSLEELYPQALALYNVVYDYAIQEG-VAKCTFAWNVAGP 939
Query: 1653 ALCEIYFEKHHKNPILISASKLYSIL 1730
LC+ Y +K ++ S S L +L
Sbjct: 940 VLCKFYLKKTKDKSVVASTSVLKKLL 965
Score = 26.6 bits (57), Expect(2) = e-107
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 11 IHTDGTVFISEDLA 52
IH+DGT +ISEDLA
Sbjct: 375 IHSDGTGYISEDLA 388
>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
Length = 988
Score = 394 bits (1012), Expect = e-107
Identities = 227/544 (41%), Positives = 324/544 (59%), Gaps = 10/544 (1%)
Frame = +3
Query: 96 PLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVKVERDENYVCSPAVDSLEICNIG 275
PLL Q RLF+ G AIKGTLL+N+KLP TI +R SM+KVE+D + V +++SLE+
Sbjct: 446 PLLIQCRLFHMGHAIKGTLLVNRKLPPRTIQVRPSMIKVEKDPS-VHMQSINSLEVVTTS 504
Query: 276 QKHK-AYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDD 452
K K YLS+ LIALL++GGVP+ FF L +ED + ++ A + N G D+
Sbjct: 505 NKPKRGYLSKHLIALLSFGGVPNEFFMDLLRSNMEDANHVYSNKRSALRA-SINCGEKDE 563
Query: 453 YTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVRLDNSYYVMGTADPSGRLKPNE 632
Y M+ GIP++EPFL+ L + + K +R GK+ + + +Y+MGT DP+G LK N+
Sbjct: 564 YNAAEMILCGIPLDEPFLKHHLSRFAREEKKKLRGGKLYMPDCFYLMGTVDPTGHLKKNQ 623
Query: 633 VCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQGKRSGA 812
VCII ++ Q+ GDVLVYRNPG HFGD+H ATYVKE+E VG +K+GIFF G RS A
Sbjct: 624 VCIIHENSQIVGDVLVYRNPGLHFGDIHKMDATYVKELESYVGHSKYGIFFPRVGTRSVA 683
Query: 813 DEIAGGDFDGDLYWVCINKTVLKDYKLQPSW-XXXXXXXXXXXXXTDFFPEDLEQYLFDQ 989
DEIAGGDFDGD YWV + +L+ ++ W ++F PE+LE+ LF
Sbjct: 684 DEIAGGDFDGDTYWVSNHPQLLQYFRKGDPWIENSVPLDSSVKKPSEFSPEELEEELFRL 743
Query: 990 FLTCRFSPSNITGSAANSWMAYMDRLLT-PIVAKSKEADLLTEKMLLLVDIYYKALDASK 1166
FL RF PS G + NSWMA MDRLLT E + + E ML L+DIYY+ALDA K
Sbjct: 744 FLKTRFQPSYAMGMSENSWMALMDRLLTLNNCTNENEKERVKENMLKLIDIYYEALDAPK 803
Query: 1167 TGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYD-LKLDSNSDDIDETAK- 1340
+G K+++PN+L A+ PH M D + STS+LG +YD +++ +D + E K
Sbjct: 804 SGRKVQVPNDLIAELFPHYMEKDKS------FTSTSILGLIYDEVEIWLENDMVGEIWKL 857
Query: 1341 KTGDIVMLPDFLEETDKKTLWMKHYEIYRSEMSNAMDSPDSSRANDIXXXXXXXXXXADC 1520
D+ + P LE+ W YE YR +M++A++ D S++++
Sbjct: 858 PCFDVEVPPSCLEK------WKTKYEEYRKDMTDALNLKDKSKSHEEAAEVNRKYKEEFY 911
Query: 1521 -----LDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIYFEKHH 1685
++ K+ DI++EA A+Y V Y+YA +V++C FAW +AG AL +Y K +
Sbjct: 912 GPTLEMEGCLKSIGDIFNEALAVYNVSYEYAMLKKEVKRCGFAWKIAGSALTRLYIIKQN 971
Query: 1686 KNPI 1697
+ +
Sbjct: 972 EKAL 975
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 388 bits (996), Expect(2) = e-106
Identities = 224/569 (39%), Positives = 323/569 (56%), Gaps = 12/569 (2%)
Frame = +3
Query: 39 LKTWQKKIQRSKN--PSC-EVLPLLSQIRLFYKGFAIKGTLLLNKKLPDNTIVIRSSMVK 209
L ++ K RS+N +C + PLL Q R+FY G+A+KGT LLNKKL T+ +R SM+K
Sbjct: 419 LNIFKGKCLRSENIQEACNQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIK 478
Query: 210 VERDENYVCSPAVDSLEICNIGQK-HKAYLSQTLIALLNYGGVPDSFFKALTWRALEDLS 386
V +D + ++LE+ + LS+ L+ALL+YGG+P+ FF + LE+
Sbjct: 479 VSKDPSLSNFSTFNALEVVTTSNPPRRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESK 538
Query: 387 IKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKV 566
++ A + N G DD +M+ GIP++EP L+ L L + +++ G++
Sbjct: 539 SIFYNKHAALNVAL-NYGEMDDQNAAQMILVGIPLDEPHLKNHLSILLKTEKNDLKAGRL 597
Query: 567 RLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEI 746
+ SYY+MGT DP+G LK +EVC+IL+ GQ+SG+VLVYRNPG HFGD+H+ KATYVK +
Sbjct: 598 PVTESYYLMGTVDPTGELKEDEVCVILESGQISGEVLVYRNPGLHFGDIHILKATYVKAL 657
Query: 747 EEIVGDAKFGIFFSTQGKRSGADEIAGGDFDGDLYWVCINKTVLKDYKLQPSW--XXXXX 920
EE VG++K+ +FF +G RS DEIAGGDFDGD+Y++ N +L+ +K W
Sbjct: 658 EEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEHFKPSEPWVSLTPPS 717
Query: 921 XXXXXXXXTDFFPEDLEQYLFDQFLTCRFSPSNITGSAANSWMAYMDRLLTPIVAKSKEA 1100
+ PE+LE+ LF+ FL F SN+ G AA+SW+ MDRLL +++E
Sbjct: 718 KSNSGRAPSQLSPEELEEELFEMFLKAGFHASNVIGIAADSWLTIMDRLLILGDERAEEK 777
Query: 1101 DLLTEKMLLLVDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLL 1280
+ +KML L+DIYY ALDA K G K+ LPNELR PH M + + STS+L
Sbjct: 778 AEMKKKMLKLIDIYYDALDAPKKGDKVYLPNELRPDIFPHYMEREKK------FKSTSIL 831
Query: 1281 GELYDLKLDSNSDDIDETAKKTGDIVMLPDFLEE------TDKKTLWMKHYEIYRSEMSN 1442
G +YD + E + +I LP F +E +K W Y+ YRSEM+
Sbjct: 832 GLIYDFVKSQTT----EEPTPSSEISKLPCFEDEPVSEFHMEKCRRW---YDNYRSEMTQ 884
Query: 1443 AMDSPDSSRANDIXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRK 1622
AM + AN++ A ++S K+ ++Y +A +Y++VYDYA G V K
Sbjct: 885 AMKTDKDESANEVIQRYKQEFYGAAGFEDSKKSLEELYPQALTLYKIVYDYAIHAG-VSK 943
Query: 1623 CRFAWFVAGEALCEIYFEKHHKNPILISA 1709
C F W VAG LC Y K + L+ A
Sbjct: 944 CGFVWKVAGPVLCRFYLMKKMQEKSLVCA 972
Score = 26.6 bits (57), Expect(2) = e-106
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 11 IHTDGTVFISEDLA 52
IH+DGT +ISEDLA
Sbjct: 401 IHSDGTGYISEDLA 414