BLASTX nr result
ID: Ephedra25_contig00018936
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra25_contig00018936
(2072 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsi... 148 2e-43
emb|CAN71037.1| hypothetical protein VITISV_011061 [Vitis vinifera] 142 7e-43
gb|EOY11267.1| Uncharacterized protein TCM_026511 [Theobroma cacao] 149 3e-40
gb|EOY32548.1| Uncharacterized protein TCM_040529 [Theobroma cacao] 145 3e-39
emb|CAB75932.1| putative protein [Arabidopsis thaliana] 127 1e-37
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi... 164 1e-37
ref|XP_003376808.1| retrovirus-related Pol polyprotein from tran... 154 2e-36
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group... 127 2e-36
gb|ABR16307.1| unknown [Picea sitchensis] 144 4e-36
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum] 120 7e-36
gb|AAT38797.2| Polyprotein, putative [Solanum demissum] 144 2e-35
emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera] 140 3e-35
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera] 140 4e-35
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 116 5e-35
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 116 5e-35
ref|XP_003376336.1| retrovirus-related Pol polyprotein from tran... 150 7e-35
gb|ABA99612.1| retrotransposon protein, putative, unclassified [... 126 2e-34
emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera] 139 2e-34
emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group] 127 3e-34
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 110 3e-34
>gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1347
Score = 148 bits (374), Expect(3) = 2e-43
Identities = 83/242 (34%), Positives = 127/242 (52%), Gaps = 1/242 (0%)
Frame = +3
Query: 1206 KKYFKSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXX 1385
K + K TR LE++H+D+CGP+ ++ G +Y + F +DY+ M W+ L
Sbjct: 501 KSFPKESQTKTREKLEIVHTDVCGPMQHQSIDGSRYYVLFLDDYTHMCWVYFLKQKSETF 560
Query: 1386 XXXXXXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITE 1565
V E +S S+ LR ++ +V +PY+PQQNG E
Sbjct: 561 ATFKKFKALV--EKQSNCSIKTLR--------PMEVFCEDEGINRQVTLPYSPQQNGAAE 610
Query: 1566 RNNRTLVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGL-NWITPY*VWYNLKPSI 1742
R NR+LV+M R W EAV T Y+ N +P + + + +TP W KP++
Sbjct: 611 RKNRSLVEMARSMLVEQDLPLKLWAEAVYTSAYLQNRLPSKAIEDDVTPMEKWCGHKPNV 670
Query: 1743 LHLHVFACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFV 1922
HL +F +C+ HIP ++R K + KAK G++IGY+ ++KGY++ E +KV VSRD F
Sbjct: 671 SHLRIFGSICYVHIPDQKRRKLDAKAKCGILIGYSNQTKGYRVFLLEDEKVEVSRDVVFQ 730
Query: 1923 ED 1928
ED
Sbjct: 731 ED 732
Score = 42.7 bits (99), Expect(3) = 2e-43
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 3/148 (2%)
Frame = +1
Query: 496 RNNHDTKYCFFNAKGPNYKPHMKSKRREPQQSSENNEVNLAKIKQDHMYVFFTNKE---Y 666
+N C+ K +Y +SK +E + E + +DHM + +E
Sbjct: 266 KNKRSNIKCYKCGKIGHYANECRSKNKERAHVTLEEE----DVNEDHMLFSASEEESTTL 321
Query: 667 NKDGWFLDYSYNSHMTRDRNIFTNYKTSNSDNFVKMVGDERLPVRGYGDNTLNFGNNIIT 846
+D W +D +HMT++ F+N S +++ + + G GD T+ +
Sbjct: 322 REDVWLVDSGCTNHMTKEERYFSNINKSIKVP-IRVRNGDIVMTAGKGDITVMTRHGKRI 380
Query: 847 LIDALYIKGL*KNLTSLYKLLTQRYNMR 930
+ + + GL KNL S+ ++++ Y +R
Sbjct: 381 IKNVFLVPGLEKNLLSVPQIISSGYWVR 408
Score = 34.7 bits (78), Expect(3) = 2e-43
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 1040 QNSFFTNIKISNLWHSRLGHNNNEYLSMI--KAAISHGPKNLSPTKVCSSCIIAKLHKKI 1213
+ + N++ WH RLGH +N+ L + K ++ P+ + C +C + K +K
Sbjct: 443 EEAMTANVQTEETWHKRLGHVSNKRLQQMQDKELVNGLPRFKVTKETCKACNLGKQSRKS 502
Query: 1214 LQK*DQ 1231
K Q
Sbjct: 503 FPKESQ 508
>emb|CAN71037.1| hypothetical protein VITISV_011061 [Vitis vinifera]
Length = 1220
Score = 142 bits (358), Expect(3) = 7e-43
Identities = 74/228 (32%), Positives = 116/228 (50%)
Frame = +3
Query: 1248 LEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXXXXXXXVQTET 1427
LE+IHS +CGP++ ++ Y F +D S+M W+ L V+T++
Sbjct: 495 LELIHSYICGPMSIASLSNNVYFALFIDDLSRMTWVYFLKTKSQVLSMFKSFKKMVETQS 554
Query: 1428 RSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNRTLVKMIRXXX 1607
+L+ I + PY PQQN ++ER N+T+++M R
Sbjct: 555 GQNVKVLI-----------IDNGGEYISKEFNLTAPYLPQQNEVSERKNKTVMEMARCML 603
Query: 1608 XXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHVFACLCFYHIP 1787
W EAV T Y+LN +P + + TP W+ +KPS+ HL VF LC+ H+P
Sbjct: 604 FEKRLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIEAWFGVKPSVKHLKVFGSLCYLHVP 663
Query: 1788 KEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVEDN 1931
+RGK + +A++GV +GY ESKGY+I K+++SRD F E++
Sbjct: 664 SVKRGKLDERAEKGVFVGYAAESKGYRIYSLSRMKIVISRDVHFDENS 711
Score = 55.5 bits (132), Expect(3) = 7e-43
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 13/160 (8%)
Frame = +1
Query: 481 FHICDRNNHDTKYCF------FNAKGPNYKPHM----KSKRREPQQSSENNEVNLAKIKQ 630
FH C R NH K C+ FN N H ++K+++ QQ E N + + K
Sbjct: 228 FH-CRRTNHAEKDCWNKGKPLFNCNFCNKLCHSEKYCRAKKKQSQQQPEKNASVIEENKN 286
Query: 631 DHMYVFFTNK---EYNKDGWFLDYSYNSHMTRDRNIFTNYKTSNSDNFVKMVGDERLPVR 801
D ++F ++ + + W +D SHMT+ +IFT+ S VK+ E + +
Sbjct: 287 DDEHLFMASQTLSSHELNTWLIDSGCTSHMTKYLSIFTSIDRSVQPK-VKLGNGEVVQAK 345
Query: 802 GYGDNTLNFGNNIITLIDALYIKGL*KNLTSLYKLLTQRY 921
G G ++ + + LYI L +NL S+ ++L Y
Sbjct: 346 GKGTIAISTKRGTKIVTNVLYIPDLDQNLLSVAQMLRNGY 385
Score = 26.2 bits (56), Expect(3) = 7e-43
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +2
Query: 977 IKKLRLKGLNRMGYLL*NLCLQNSFFTNIKISNLWHSRLGHNNNEYLS-MIKAAISHGPK 1153
I K+++ G + YL +L + F I S +WH GH N + L M +A +
Sbjct: 404 IAKIKMNG--NIFYLKLDLVEGHVFSAKIDESVVWHKSYGHFNLKSLRFMQEAGMVEDML 461
Query: 1154 NLS-PTKVCSSCIIAKLHKK 1210
+S + C SC + K ++
Sbjct: 462 EISVNAQTCESCELGKQQRQ 481
>gb|EOY11267.1| Uncharacterized protein TCM_026511 [Theobroma cacao]
Length = 1318
Score = 149 bits (377), Expect(3) = 3e-40
Identities = 80/237 (33%), Positives = 125/237 (52%)
Frame = +3
Query: 1218 KSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXX 1397
+S+ +T R L++IH+D+CGPI ++ G KY + F +D+S+ WI L
Sbjct: 509 QSQTRTANR-LQLIHTDICGPIGTLSLNGNKYFILFIDDFSRFCWIFFLKQKSEAIQYFM 567
Query: 1398 XXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNR 1577
V+ +T K L N + + +PY+PQQNG++ER NR
Sbjct: 568 KFKVLVEKQTDQKIKALRSDNGSEYTSNEFKALLTQEGIKQFLTVPYSPQQNGVSERKNR 627
Query: 1578 TLVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHV 1757
T+++MIR +W EA + N IP LN +TP+ VW+ KPSI ++ V
Sbjct: 628 TIMEMIRCLLFEQQMPKYFWAEAANFAVTLQNLIPTTALNSMTPFEVWHGYKPSISNVKV 687
Query: 1758 FACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVED 1928
F C+ + +P+++R K + K + + +GY+ SKGY++ ETKKV +SRD F ED
Sbjct: 688 FGCIAYAQVPQQKRTKLDSKTQISINLGYSSVSKGYRLFNVETKKVFISRDVVFNED 744
Score = 35.4 bits (80), Expect(3) = 3e-40
Identities = 29/154 (18%), Positives = 71/154 (46%), Gaps = 8/154 (5%)
Frame = +1
Query: 490 CDRNNHDTKYCFF----NAKGPNYKPHMKS--KRREPQQSSENNEVNLAKIKQDHMYVFF 651
C + NH +YC++ + N K H++ K +E + + V + ++ +++
Sbjct: 259 CKKKNHIERYCWYRPHVKCRACNQKGHVEKVCKNKENRVEEKAAIVEQKEDAEETLFMVI 318
Query: 652 TNKEYNKDG-WFLDYSYNSHMT-RDRNIFTNYKTSNSDNFVKMVGDERLPVRGYGDNTLN 825
+ + KD W +D + ++H+T + +N K S V++ L + G G +
Sbjct: 319 ESNDSKKDSIWLIDSACSTHITGKIKNFLDLNKAYKST--VEIGDGNLLKIAGRGTVGIT 376
Query: 826 FGNNIITLIDALYIKGL*KNLTSLYKLLTQRYNM 927
+ T+ + + + +NL S+ +L+ ++ ++
Sbjct: 377 TKKGMKTIANVCFAPEVTQNLLSVGQLVKEKNSL 410
Score = 30.0 bits (66), Expect(3) = 3e-40
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Frame = +2
Query: 956 PAAISLAIKKLRLK----GLNRMGYLL*NLCLQNSFFTNIKISNLWHSRLGHNNNEYLSM 1123
P+ +A K+R K LN G++ C+ N + LWH RLGH N +++
Sbjct: 422 PSGREIATVKMRNKCFPLDLNEAGHMAYK-CVSNE-------ARLWHRRLGHINYQFIKN 473
Query: 1124 IKA--AISHGPKNLSPTKVCSSCIIAK 1198
+ + ++ P K C C+ K
Sbjct: 474 MGSLNLVNDMPIITEVEKTCEVCLQGK 500
>gb|EOY32548.1| Uncharacterized protein TCM_040529 [Theobroma cacao]
Length = 1266
Score = 145 bits (365), Expect(3) = 3e-39
Identities = 78/237 (32%), Positives = 124/237 (52%)
Frame = +3
Query: 1218 KSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXX 1397
+S+ + T R L++IH+D+CGPI ++ G KY + F +D+S+ WI L
Sbjct: 509 QSQTRATNR-LQLIHTDICGPIGTLSLNGNKYFILFIDDFSRFCWIFFLKQKSEAIQYFM 567
Query: 1398 XXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNR 1577
V+ +T K L N + + + Y+PQQNG++ER NR
Sbjct: 568 KFKVLVEKQTDQKIKALRSDNGSEYTSNEFKALLTQEGIKQFLTVTYSPQQNGVSERKNR 627
Query: 1578 TLVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHV 1757
T+++MIR +W EA + N IP LN +TP+ VW+ KPSI ++ V
Sbjct: 628 TIMEMIRCLLFEQQMPKYFWAEAANFAVTLQNLIPTTALNSMTPFEVWHGYKPSISNVKV 687
Query: 1758 FACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVED 1928
F C+ + +P+++R K + K + + +GY+ SKGY++ +TKKV +SRD F ED
Sbjct: 688 FGCIAYAQVPQQKRTKLDSKTQISINLGYSSVSKGYRLFNVKTKKVFISRDVVFNED 744
Score = 36.6 bits (83), Expect(3) = 3e-39
Identities = 30/154 (19%), Positives = 71/154 (46%), Gaps = 8/154 (5%)
Frame = +1
Query: 490 CDRNNHDTKYCFF----NAKGPNYKPHMKS--KRREPQQSSENNEVNLAKIKQDHMYVFF 651
C + NH +YC++ + N K H++ K +E + + V + ++ +++
Sbjct: 259 CKKKNHIERYCWYRPHVKCRACNQKGHVEKVCKNKENRVEEKVAIVEQKEDAEETLFMVI 318
Query: 652 TNKEYNKDG-WFLDYSYNSHMT-RDRNIFTNYKTSNSDNFVKMVGDERLPVRGYGDNTLN 825
+ + KD W +D + ++H+T + +N K S V++ L + G G +
Sbjct: 319 ESNDSKKDSIWLIDSACSTHITGKIKNFLDLNKAYKST--VEIGDGNLLKIEGRGTIGIT 376
Query: 826 FGNNIITLIDALYIKGL*KNLTSLYKLLTQRYNM 927
I T+ + + + +NL S+ +L+ ++ ++
Sbjct: 377 TKKGIKTIANVCFAPEVTQNLLSVGQLVKEKNSL 410
Score = 30.4 bits (67), Expect(3) = 3e-39
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Frame = +2
Query: 956 PAAISLAIKKLRLK----GLNRMGYLL*NLCLQNSFFTNIKISNLWHSRLGHNNNEYLSM 1123
P+ +A K+R K LN G++ C+ N + LWH RLGH N +++
Sbjct: 422 PSGREIATVKMRNKCFPLDLNEAGHMAYK-CVSNE-------ARLWHRRLGHINYQFIKN 473
Query: 1124 IKA--AISHGPKNLSPTKVCSSCIIAK 1198
+ + ++ P K C C+ K
Sbjct: 474 MGSLNLVNDMPVITEVEKTCEVCLQGK 500
>emb|CAB75932.1| putative protein [Arabidopsis thaliana]
Length = 1339
Score = 127 bits (320), Expect(3) = 1e-37
Identities = 67/227 (29%), Positives = 111/227 (48%)
Frame = +3
Query: 1248 LEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXXXXXXXVQTET 1427
L+++HSD+CGPI P + GK+YIL+F +D+++ W+ L V+ E
Sbjct: 495 LQLVHSDICGPITPISHSGKRYILSFIDDFTRKTWVYFLHEKSEAFATFKIFKASVEKEI 554
Query: 1428 RSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNRTLVKMIRXXX 1607
+ + L N ++ + PQQNG+ ER NRT++ +R
Sbjct: 555 GAFLTCLRTDRGGEFTSNEFGEFCRSHGISRQLTAAFTPQQNGVAERKNRTIMNAVRSML 614
Query: 1608 XXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHVFACLCFYHIP 1787
+W EA +I N P + +TP W KP + + VF C+ + HIP
Sbjct: 615 SERQVPKMFWSEATKWSVHIQNRSPTAAVEGMTPEEAWSGRKPVVEYFRVFGCIGYVHIP 674
Query: 1788 KEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVED 1928
++R K + K+K+ V +G +EESK +++ KK+++S+D F ED
Sbjct: 675 DQKRSKLDDKSKKCVFLGVSEESKAWRLYDPVMKKIVISKDVVFDED 721
Score = 41.2 bits (95), Expect(3) = 1e-37
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Frame = +2
Query: 974 AIKKLRLKGLNRMGYLL*N------LCLQNSFFTNIKISNLWHSRLGHNNNEYLSMI--K 1129
AI + + G NRM +LL + LCLQ + K ++LWH R GH N E L ++ K
Sbjct: 397 AIMETNMSG-NRMFFLLASKPQKNSLCLQTEEVMD-KENHLWHCRFGHLNQEGLKLLAHK 454
Query: 1130 AAISHGPKNLSPTKVCSSCIIAKLHKKILQK 1222
+ P + ++C+ C+ K H++ + K
Sbjct: 455 KMVIGLPILKATKEICAICLTGKQHRESMSK 485
Score = 37.4 bits (85), Expect(3) = 1e-37
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +1
Query: 580 PQQSSENNEVNLAKIKQDHMYVFFTNKEYNKDG-WFLDYSYNSHMTRDRNIFTNYKTSNS 756
P+ N L + ++ + + + N+D WFLD ++HMT + F+ +
Sbjct: 266 PEWEKNANYAELEEEEELLLMAYVEQNQANRDEVWFLDSGCSNHMTGSKEWFSELE-EGF 324
Query: 757 DNFVKMVGDERLPVRGYGDNTLNFGNNIITLIDALYIKGL*KNLTSLYKL 906
+ VK+ D R+ V G G + + + Y+ L NL SL +L
Sbjct: 325 NRTVKLGNDTRMSVVGKGSVKVKVNGVTQVIPEVYYVPELRNNLLSLGQL 374
>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1499
Score = 164 bits (415), Expect = 1e-37
Identities = 84/241 (34%), Positives = 126/241 (52%), Gaps = 1/241 (0%)
Frame = +3
Query: 1206 KKYFKSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXX 1385
+ + K T + LE+IHSD+CGP+ ++ G +Y LTF +D+S+M W+ L
Sbjct: 502 RSFPKKSQSNTNKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVYFLKNKSEVI 561
Query: 1386 XXXXXXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITE 1565
V+ ++ S+ L E+ PY+PQQNG+ E
Sbjct: 562 TKFKIFKPYVENQSESRIKRLRTDGGGEFLSREFIKLCQESGIHHEITTPYSPQQNGVAE 621
Query: 1566 RNNRTLVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLN-WITPY*VWYNLKPSI 1742
R NRTLV+M R +W EA+ T Y+ N +P + L +TP +W KPS+
Sbjct: 622 RRNRTLVEMARSMIEEKKLSNKFWAEAIATSTYLQNRLPSKSLEKGVTPMEIWSGKKPSV 681
Query: 1743 LHLHVFACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFV 1922
HL VF C+C+ HIP E+R K + KAK+G+ +GY+ ESKGY++ +K+ VS+D F
Sbjct: 682 DHLKVFGCVCYIHIPDEKRRKLDTKAKQGIFVGYSNESKGYRVFLLNEEKIEVSKDVTFD 741
Query: 1923 E 1925
E
Sbjct: 742 E 742
>ref|XP_003376808.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trichinella spiralis] gi|316974460|gb|EFV57947.1|
retrovirus-related Pol polyprotein from transposon TNT
1-94 [Trichinella spiralis]
Length = 1324
Score = 154 bits (390), Expect(2) = 2e-36
Identities = 83/240 (34%), Positives = 120/240 (50%)
Frame = +3
Query: 1218 KSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXX 1397
KS K ++ LE++HSD+CGP+ ++ G +Y L+F +D+S+ ++ L
Sbjct: 472 KSATKRSKEVLELVHSDICGPMQVASVGGARYFLSFIDDFSRKSFVYFLKHKNEVLPKFK 531
Query: 1398 XXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNR 1577
V+ +T + L N E IP PQQNG+ ER NR
Sbjct: 532 DFIAMVERQTSKRVKCLRTDNGREYVNNMFAEFLVRKGIRHERTIPETPQQNGVAERMNR 591
Query: 1578 TLVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHV 1757
TLV+ R W EAV T NY+ N P + L +TP W KP++ HL V
Sbjct: 592 TLVEKARTMLIDANLSPDLWAEAVGTANYLRNRCPTKALRKVTPEEAWSGRKPNLAHLKV 651
Query: 1758 FACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVEDNIP 1937
F CL H+P QR K +PK++ + +GY E SKGY+ + +TKK+ V+RD KF+E P
Sbjct: 652 FGCLAMVHVPSGQRKKWDPKSEERIFVGYCETSKGYRTVDRKTKKMYVTRDVKFLESQFP 711
Score = 27.3 bits (59), Expect(2) = 2e-36
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 1067 ISNLWHSRLGHNNNEYLSMIKAAISHGPKNLSPTKV-CSSCIIAK 1198
+ +LWH RLGH + + +++ + G + + TK C +C+ K
Sbjct: 420 VPDLWHRRLGHLSRGSMKLLQDGQATGIPSDAITKTDCVTCLKGK 464
>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108711922|gb|ABF99717.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1335
Score = 127 bits (319), Expect(3) = 2e-36
Identities = 69/226 (30%), Positives = 110/226 (48%)
Frame = +3
Query: 1248 LEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXXXXXXXVQTET 1427
LE++H+D+ G + + G Y +TF +DY++M W+ L V+ ++
Sbjct: 517 LELVHADIVGKVPTISEGGNWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAMVENQS 576
Query: 1428 RSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNRTLVKMIRXXX 1607
K +L + ++ Y+ QQNG+ ER NRT+ M
Sbjct: 577 NRKIKVLRSDQGREYISKEFEKYCENAGIRRQLTAGYSAQQNGVAERKNRTINDMANSML 636
Query: 1608 XXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHVFACLCFYHIP 1787
++W EAV T YILN P + + TP+ WY KP I H+ VF C+C+ +P
Sbjct: 637 QDKGMPKSFWAEAVNTAVYILNRSPTKAVTNRTPFEAWYGKKPVIGHMRVFGCICYAQVP 696
Query: 1788 KEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVE 1925
++R K + K+ R + +GY + KGY++ E KK+I+SRD F E
Sbjct: 697 AQKRVKFDNKSDRCIFVGYADGIKGYRLYNLEKKKIIISRDAIFDE 742
Score = 40.8 bits (94), Expect(3) = 2e-36
Identities = 68/334 (20%), Positives = 119/334 (35%), Gaps = 30/334 (8%)
Frame = +1
Query: 10 KGIFDLI*SKK*SHTIWSKLKNVLAGST---ASTIARLRNQLHNLRFA*DKSMAKFIQEI 180
+ +F I K S W KLK GS A + LR Q NL + + + +
Sbjct: 75 ESLFPRIIGAKKSKEAWDKLKEEFQGSQKVLAVKLQTLRRQFQNLLMKESEKVKDYFSRV 134
Query: 181 CEIRDRIDVCEIPLDESELFYSVPDALPS-----------D*NAFKDSIF------LIRN 309
EI +++ + +++ ++ + +LP + KDS+ L R
Sbjct: 135 IEIVNQMRLYGEDINDQKVVEKILISLPEKYEYIVAATEESKDLSKDSLESHEERKLQRE 194
Query: 310 KISFDALCQALLEKKQGNTRKRTSYY-------EVQYA*NKTIXXXXXXXXXXXXXXXXX 468
S + Q+ L + N+R R ++ + Y
Sbjct: 195 GSSIENAFQSKLSFRPQNSRFRGNFQKNGFPMRDRGYFQKNGFSRQKEDGQERREKGTSS 254
Query: 469 XXXXFHICDRNNHDTKYCFFNAKGPNYKPHMKSKRREPQQSSENNEVNLAKIKQDHMYVF 648
IC +++H T C+ K K K + ++ E N N ++ K+ +
Sbjct: 255 SNLWCDICQKSSHTTDMCW--KKMTCNKCKRKGHIAKYCRTREINRANFSQEKEKSEEMV 312
Query: 649 F---TNKEYNKDGWFLDYSYNSHMTRDRNIFTNYKTSNSDNFVKMVGDERLPVRGYGDNT 819
F T +E D W +D +HM D N+F +S + M G G
Sbjct: 313 FSCHTAQEEKDDVWVIDSGCTNHMAADPNLFREMDSSYHAK-IHMGNGSIAQSEGKGTVA 371
Query: 820 LNFGNNIITLIDALYIKGL*KNLTSLYKLLTQRY 921
+ + + D L + L +NL S+ +LL Y
Sbjct: 372 VQTADGPKFIKDVLLVPDLKQNLLSIGQLLEHGY 405
Score = 34.3 bits (77), Expect(3) = 2e-36
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 1004 NRMGYLL*NLCLQNSFFTNIKISNLWHSRLGHNNNEYLSMI--KAAISHGPKNLSPTKVC 1177
NR L N Q + + + IS+LWH R+GH N L ++ K + P + C
Sbjct: 433 NRNFLLRMNHTTQMALRSEVDISDLWHKRMGHLNYRALKLLRTKGMVQGLPFITLKSDPC 492
Query: 1178 SSCIIAK 1198
C+ K
Sbjct: 493 EGCVFGK 499
>gb|ABR16307.1| unknown [Picea sitchensis]
Length = 407
Score = 144 bits (363), Expect(2) = 4e-36
Identities = 77/246 (31%), Positives = 119/246 (48%)
Frame = +3
Query: 1200 YTKKYFKSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXX 1379
+ +K+ K K + L ++HSDL GP+ P++ G +Y+LTF +DYS+ W+ L
Sbjct: 118 HMEKFIKGKSWRAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDE 177
Query: 1380 XXXXXXXXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGI 1559
V+ ++ +L E +PY PQQNG+
Sbjct: 178 VFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGV 237
Query: 1560 TERNNRTLVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPS 1739
ER NRTL++M R +W EA+ T YI+N P + TP W KP+
Sbjct: 238 AERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPT 297
Query: 1740 ILHLHVFACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKF 1919
+ H VF C + HIP E+R K + K+ + +M+GY+E SK Y++ E ++++ RD F
Sbjct: 298 VSHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAYRVYDPEKNEILIRRDVIF 357
Query: 1920 VEDNIP 1937
E IP
Sbjct: 358 DERCIP 363
Score = 36.6 bits (83), Expect(2) = 4e-36
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 1067 ISNLWHSRLGHNNNEYLSMIKA-AISHG-PKNLSPTKVCSSCIIAKLH 1204
+S LWH R+GH N + LS++K + +G PK VC C+ K H
Sbjct: 71 VSRLWHERMGHLNYKSLSLMKRFEMVYGLPKISQSQGVCEGCMSGKQH 118
>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
Length = 1338
Score = 120 bits (300), Expect(3) = 7e-36
Identities = 70/227 (30%), Positives = 106/227 (46%)
Frame = +3
Query: 1248 LEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXXXXXXXVQTET 1427
L+++HSD+CGP ++ G +Y +TF +D+S+ W+ L V+ ET
Sbjct: 480 LDLVHSDVCGPFKK-SLGGARYFVTFIDDHSRKTWVYTLKTKDQVFQVFKQFLTLVERET 538
Query: 1428 RSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNRTLVKMIRXXX 1607
K + + + + P PQ NG+ ER NRTL++ R
Sbjct: 539 GKKLKCIRTDNGG-EYQGQFDAYCKEHGIRHQFTPPKTPQLNGLAERMNRTLIERTRCLL 597
Query: 1608 XXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHVFACLCFYHIP 1787
+WGEA++T Y+LN P L + P +W S L VF C + H+P
Sbjct: 598 SHSKLPKAFWGEALVTAAYVLNHSPCVPLQYKAPEKIWLGRDISYDQLRVFGCKAYVHVP 657
Query: 1788 KEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVED 1928
K++R K + K + V IGY ++ GYK KK++ SRD FVED
Sbjct: 658 KDERSKLDVKTRECVFIGYGQDMLGYKFYDPVEKKLVRSRDVVFVED 704
Score = 51.6 bits (122), Expect(3) = 7e-36
Identities = 73/343 (21%), Positives = 131/343 (38%), Gaps = 10/343 (2%)
Frame = +1
Query: 46 SHTIWSKLKNVLAGSTASTIARLRNQLHNLRFA*DKSMAKFIQEICEIRDRIDVCEIPLD 225
+ ++W KL+ + A T + +L +++ ++A + EI I D++ I D
Sbjct: 79 ARSLWDKLEELYASKTGNNKLFYLTKLMQVKYVEGTTVADHLNEIQGIVDQLSGMGIKFD 138
Query: 226 ESELFYSVPDALPSD*NAFKDSI-------FLIRNKISFDALCQALLEKKQGNTRKRTSY 384
+ L V LP K SI + + L + + + QG + ++
Sbjct: 139 DEVLALMVLATLPESWETLKVSITNSAPNGVVNMETVKSGILNEEMRRRSQGTSSSQSEV 198
Query: 385 YEVQYA*NKTIXXXXXXXXXXXXXXXXXXXXXFHICDRNNHDTKYCFFNAKGPNYKPHMK 564
V ++ H C + H ++C + N + K
Sbjct: 199 LAVTTR-GRSQNKSQSNRDKSRGKSNKFANVECHYCKKKGHIKRFC---RQFQNDQKKNK 254
Query: 565 SKRREPQQSS--ENNEVNLAKIKQDHMYVFFTNKEYNKDGWFLDYSYNSHMTRDRNIFTN 738
K+ +P++SS E N + D + T +E W +D H T R +F++
Sbjct: 255 GKKVKPEESSDDETNSFGEFNVVYDDDIINLTTQEMT---WVIDSGATIHATPRRELFSS 311
Query: 739 YKTSNSDNFVKMVGDERLPVRGYGDNTLNFGNNI-ITLIDALYIKGL*KNLTSLYKLLTQ 915
Y T VKM V G GD L N + + L D ++ + NL S+ KL +
Sbjct: 312 Y-TLGDFGRVKMGNANFSTVVGKGDVCLETMNGMKLLLRDVRHVPDMRLNLISVDKLDEE 370
Query: 916 RYNMRAF*KGNGQTCCHISCNQKIKAEGT*QNGLFTMKPMLTE 1044
Y F NGQ ++ + A GT Q+ L+ + +++
Sbjct: 371 GY-CNTF--HNGQ--WKLTKGSLMVARGTKQSKLYVTQASISQ 408
Score = 28.9 bits (63), Expect(3) = 7e-36
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 1055 TNIKISNLWHSRLGHNNNEYLSMIKAAISHGPKNLSPTKVCSSCIIAKLHK 1207
+NIK LWH RLGH + + ++ + + N K C+ C+ K ++
Sbjct: 418 SNIK---LWHRRLGHMSEKSMARLVKKNALPGLNQIQLKKCADCLAGKQNR 465
>gb|AAT38797.2| Polyprotein, putative [Solanum demissum]
Length = 1793
Score = 144 bits (364), Expect(2) = 2e-35
Identities = 76/226 (33%), Positives = 120/226 (53%)
Frame = +3
Query: 1248 LEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXXXXXXXVQTET 1427
L++IH+D+CGPI ++ G KY L F +DY++M W+ + V+ +
Sbjct: 628 LQLIHTDVCGPIKTDSLSGNKYFLLFIDDYTRMCWVYFIRLKSEVFDVFKQFKALVENQC 687
Query: 1428 RSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNRTLVKMIRXXX 1607
+ L + ++ +PY PQQNG++ER NRT+++M R
Sbjct: 688 NLRIKALRSDNGGEHTSFQFVEFCNSTCIECQLTLPYTPQQNGVSERKNRTVMEMARCLL 747
Query: 1608 XXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHVFACLCFYHIP 1787
+ EA+ T Y+LN +P + L +TPY W KPS+ HL +F C C+Y +P
Sbjct: 748 LERKIPNQFLAEAINTSVYLLNRLPTKALQDMTPYEAWCGNKPSVHHLRIFGCKCYYRVP 807
Query: 1788 KEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVE 1925
K +R K + KA +G+ +GY+ SKGYKI ++K+I+SR+ KF E
Sbjct: 808 KTKRTKLDNKAHKGIFMGYS-SSKGYKIFCLRSEKLILSREVKFDE 852
Score = 33.5 bits (75), Expect(2) = 2e-35
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 1070 SNLWHSRLGHNNNEYLSMI--KAAISHGPKNLSPTKVCSSC 1186
+NLWH R GH N ++ + K + + P+ LS +VC +C
Sbjct: 566 TNLWHKRFGHFNLRSIAEMKKKELVENMPEFLSNAQVCETC 606
>emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]
Length = 1183
Score = 140 bits (353), Expect(2) = 3e-35
Identities = 77/240 (32%), Positives = 116/240 (48%)
Frame = +3
Query: 1206 KKYFKSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXX 1385
K + K + + CLE+IH+DLCGP+ + G +Y L F+ D+S+M W+ L
Sbjct: 418 KPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTNDHSRMSWVYFLQSKAETF 477
Query: 1386 XXXXXXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITE 1565
V+ ++ +L N + E+ PY+P+QNG+ E
Sbjct: 478 ETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDFKVFCEEEGLHRELTTPYSPEQNGVAE 537
Query: 1566 RNNRTLVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSIL 1745
R NRT+V+M R +W E V T Y+LN P + + TPY WY KP +
Sbjct: 538 RKNRTVVEMARSMMKAKNLSNHFWAEGVATAVYLLNISPTKAVLNRTPYEAWYGKKPWVS 597
Query: 1746 HLHVFACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVE 1925
HL VF + + I R K + K+ + + IGY +SKGYK+ + K+IVSR+ F E
Sbjct: 598 HLKVFGSVAYTLIESHNRSKLDEKSVKCIFIGYCSQSKGYKLYNPVSGKIIVSRNVVFDE 657
Score = 37.4 bits (85), Expect(2) = 3e-35
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 1070 SNLWHSRLGHNNNEYLSMI-KAAISHGPKNLSPTKVCSSCIIAKLHKKILQK 1222
SNLWH R GH N + L ++ K + G + VC CI K KK K
Sbjct: 371 SNLWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVNVCEGCIYGKQSKKPFPK 422
>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
Length = 1472
Score = 140 bits (352), Expect(2) = 4e-35
Identities = 78/240 (32%), Positives = 117/240 (48%)
Frame = +3
Query: 1206 KKYFKSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXX 1385
K + K + + CLE+IH+DLCGP+ + G +Y L F++D+S+M W+ L
Sbjct: 469 KPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETF 528
Query: 1386 XXXXXXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITE 1565
V+ ++ +L N + E+ PY+P QNG+ E
Sbjct: 529 ETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDFKVFXEEEGLHRELTTPYSPXQNGVAE 588
Query: 1566 RNNRTLVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSIL 1745
R NRT+V+M R +W E V T Y+LN P + + TPY WY KP +
Sbjct: 589 RKNRTVVEMARSMMKAKNLSNHFWAEGVATAVYLLNISPTKAVLNRTPYEAWYGRKPWVS 648
Query: 1746 HLHVFACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVE 1925
HL VF + + I R K + K+ + + IGY +SKGYK+ + K+IVSR+ F E
Sbjct: 649 HLKVFGSVAYTLIDSHNRSKLDEKSVKCIFIGYCSQSKGYKLYNPVSGKIIVSRNVVFDE 708
Score = 37.4 bits (85), Expect(2) = 4e-35
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 1070 SNLWHSRLGHNNNEYLSMI-KAAISHGPKNLSPTKVCSSCIIAKLHKKILQK 1222
SNLWH R GH N + L ++ K + G + VC CI K KK K
Sbjct: 422 SNLWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVNVCEGCIYGKQSKKPFPK 473
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 116 bits (290), Expect(3) = 5e-35
Identities = 70/237 (29%), Positives = 104/237 (43%)
Frame = +3
Query: 1215 FKSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXX 1394
F + TT L+ +HSDL GP + G +Y++T +DYS+ W L
Sbjct: 688 FNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVF 747
Query: 1395 XXXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNN 1574
V+ +T K +L + +P+ PQQNG+ ER N
Sbjct: 748 KEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMN 807
Query: 1575 RTLVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLH 1754
RT++ R +W EAV T Y++N P ++ TP VW + L
Sbjct: 808 RTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLR 867
Query: 1755 VFACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVE 1925
VF C + H+ GK P+A + + +GY KGYK+ ETKKV++SR+ F E
Sbjct: 868 VFGCTAYAHV---DNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHE 921
Score = 42.4 bits (98), Expect(3) = 5e-35
Identities = 69/307 (22%), Positives = 109/307 (35%), Gaps = 18/307 (5%)
Frame = +1
Query: 55 IWSKLKNVLAGSTASTIARLRNQLHNLRFA*DKSMAKFIQEICEIRDRIDVCEIPLDESE 234
+W KL+ + ++ L+ L + D S+ + EI ++ E+ DE +
Sbjct: 290 LWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEVKYDEED 349
Query: 235 LFYSVPDALPSD*NAFKDSIFLIRNKIS----FDALCQALLEKKQGNTRKRTSYYE---- 390
L + +LPS F+D+I R+ ++ +DAL KK + S E
Sbjct: 350 LGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGLIV 409
Query: 391 ---VQYA*NKTIXXXXXXXXXXXXXXXXXXXXXFHICDRNNHDTKYCFFNAKGPNYKPHM 561
Q K C R+ HD C +K H
Sbjct: 410 WGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDIFEC--------WKLHD 461
Query: 562 KSKRR-----EPQQSSENNEVNLAKIKQD-HMYVFFTNKEYNKDGWFLDYSYNSHMTRDR 723
K KR + ++ E + K D + V + D W L+ + HM +R
Sbjct: 462 KDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNR 521
Query: 724 NIFTNYKTSNSDNFVKMVGDERLPVRGYGDNTLN-FGNNIITLIDALYIKGL*KNLTSLY 900
+ F Y+ V M D V G G + F I TL D +I L ++L SL
Sbjct: 522 DWFATYEAVQVGT-VLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLC 580
Query: 901 KLLTQRY 921
L + Y
Sbjct: 581 TLDRKGY 587
Score = 38.9 bits (89), Expect(3) = 5e-35
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +2
Query: 944 GMDKPAAISLAIKKLRLKGLN----RMGYLL*NLCLQNSFFTNIKISNLWHSRLGHNNNE 1111
G+ K SL + K +K N R +L N+ + +N +NLWH RLGH
Sbjct: 594 GILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEI 653
Query: 1112 YLSMIKAAISHGPKNLSPTKVCSSCIIAKLHKKI 1213
L+ + +++ K C CI K HK++
Sbjct: 654 GLAELSKRGLLDGQSIGKLKFCEHCIFGK-HKRV 686
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 116 bits (290), Expect(3) = 5e-35
Identities = 70/237 (29%), Positives = 104/237 (43%)
Frame = +3
Query: 1215 FKSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXX 1394
F + TT L+ +HSDL GP + G +Y++T +DYS+ W L
Sbjct: 481 FNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVF 540
Query: 1395 XXXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNN 1574
V+ +T K +L + +P+ PQQNG+ ER N
Sbjct: 541 KEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMN 600
Query: 1575 RTLVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLH 1754
RT++ R +W EAV T Y++N P ++ TP VW + L
Sbjct: 601 RTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLR 660
Query: 1755 VFACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVE 1925
VF C + H+ GK P+A + + +GY KGYK+ ETKKV++SR+ F E
Sbjct: 661 VFGCTAYAHV---DNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHE 714
Score = 42.4 bits (98), Expect(3) = 5e-35
Identities = 69/307 (22%), Positives = 109/307 (35%), Gaps = 18/307 (5%)
Frame = +1
Query: 55 IWSKLKNVLAGSTASTIARLRNQLHNLRFA*DKSMAKFIQEICEIRDRIDVCEIPLDESE 234
+W KL+ + ++ L+ L + D S+ + EI ++ E+ DE +
Sbjct: 83 LWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSAFKEIIADLESMEVKYDEED 142
Query: 235 LFYSVPDALPSD*NAFKDSIFLIRNKIS----FDALCQALLEKKQGNTRKRTSYYE---- 390
L + +LPS F+D+I R+ ++ +DAL KK + S E
Sbjct: 143 LGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGLIV 202
Query: 391 ---VQYA*NKTIXXXXXXXXXXXXXXXXXXXXXFHICDRNNHDTKYCFFNAKGPNYKPHM 561
Q K C R+ HD C +K H
Sbjct: 203 WGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDIFEC--------WKLHD 254
Query: 562 KSKRR-----EPQQSSENNEVNLAKIKQD-HMYVFFTNKEYNKDGWFLDYSYNSHMTRDR 723
K KR + ++ E + K D + V + D W L+ + HM +R
Sbjct: 255 KDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNR 314
Query: 724 NIFTNYKTSNSDNFVKMVGDERLPVRGYGDNTLN-FGNNIITLIDALYIKGL*KNLTSLY 900
+ F Y+ V M D V G G + F I TL D +I L ++L SL
Sbjct: 315 DWFATYEAVQVGT-VLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLC 373
Query: 901 KLLTQRY 921
L + Y
Sbjct: 374 TLDRKGY 380
Score = 38.9 bits (89), Expect(3) = 5e-35
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +2
Query: 944 GMDKPAAISLAIKKLRLKGLN----RMGYLL*NLCLQNSFFTNIKISNLWHSRLGHNNNE 1111
G+ K SL + K +K N R +L N+ + +N +NLWH RLGH
Sbjct: 387 GILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEI 446
Query: 1112 YLSMIKAAISHGPKNLSPTKVCSSCIIAKLHKKI 1213
L+ + +++ K C CI K HK++
Sbjct: 447 GLAELSKRGLLDGQSIGKLKFCEHCIFGK-HKRV 479
>ref|XP_003376336.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trichinella spiralis] gi|316974954|gb|EFV58419.1|
retrovirus-related Pol polyprotein from transposon TNT
1-94 [Trichinella spiralis]
Length = 1003
Score = 150 bits (380), Expect(2) = 7e-35
Identities = 82/240 (34%), Positives = 119/240 (49%)
Frame = +3
Query: 1218 KSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXX 1397
KS K ++ LE++HSD+CGP+ ++ G +Y L+F +D+S+ ++ L
Sbjct: 165 KSATKRSKEVLELVHSDICGPMQVASVGGARYFLSFIDDFSRKSFVYFLKHKNEVLSKFK 224
Query: 1398 XXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNR 1577
V+ +T + L N E IP PQQNG+ ER NR
Sbjct: 225 DFIAMVERQTSKRVKCLRTDNGREYVNNMFAEFLVRKGIRHERTIPETPQQNGVAERMNR 284
Query: 1578 TLVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHV 1757
TLV+ R W EAV T NY+ N P + L +TP W KP++ HL V
Sbjct: 285 TLVEKARTMLIDANLSPDLWAEAVGTANYLRNRCPTKALRKVTPEEAWSGRKPNLAHLKV 344
Query: 1758 FACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVEDNIP 1937
F CL H+P QR K + K++ + +GY E SKGY+ + +TKK+ V+RD KF+E P
Sbjct: 345 FGCLAMVHVPSGQRKKWDLKSEERIFVGYCETSKGYRTVDRKTKKMYVTRDVKFLESQFP 404
Score = 25.8 bits (55), Expect(2) = 7e-35
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 1067 ISNLWHSRLGHNNNEYLSMIKAAISHGPKNLSPTKV-CSSCIIAK 1198
+ +LWH +LGH + + +++ + G + + TK C +C+ K
Sbjct: 113 VPDLWHRQLGHLSRGSMKLLQDGQATGIPSDAITKTDCVTCLKGK 157
>gb|ABA99612.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1198
Score = 126 bits (317), Expect(3) = 2e-34
Identities = 75/281 (26%), Positives = 130/281 (46%), Gaps = 10/281 (3%)
Frame = +3
Query: 1248 LEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXXXXXXXVQTET 1427
LE++H+D+ G + + G Y +TF +DY++M W+ L V+ ++
Sbjct: 468 LELVHTDIVGKVPTISEGGNWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAMVENQS 527
Query: 1428 RSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNRTLVKMIRXXX 1607
K +L + ++ Y+ QQNG+ ER NRT+ M
Sbjct: 528 NRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTAGYSAQQNGVAERKNRTINDMANSML 587
Query: 1608 XXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHVFACLCFYHIP 1787
++W EAV T YILN P + + TP+ WY KP I H+ VF C+C+ +P
Sbjct: 588 QDKGMPKSFWAEAVNTAIYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRVFGCICYAQVP 647
Query: 1788 KEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRD----------FKFVEDNIP 1937
++R K + K+ R + +GY + KGY++ E KK+I+SRD +K E +I
Sbjct: 648 AQKRVKFDNKSDRCIFVGYADGIKGYRLYNLEKKKIIISRDVIFDESATWNWKSPEASIV 707
Query: 1938 VPLTIRQTSHHTFDLRYLKDVQKTSIQIDLSICNRINRWHI 2060
P + ++ H ++ ++D ++ + + N W +
Sbjct: 708 EPQSFQEAEKHDNWIKAMED--------EIHMIEKNNTWEL 740
Score = 36.2 bits (82), Expect(3) = 2e-34
Identities = 34/147 (23%), Positives = 53/147 (36%), Gaps = 3/147 (2%)
Frame = +1
Query: 490 CDRNNHDTKYCFFNAKGPNYKPHMKSKRREPQQSSENNEVNLAKIKQDHMYVFF---TNK 660
C R H KYC ++ E N N ++ K+ + F T +
Sbjct: 232 CKRKGHIAKYC---------------------RTREINRANFSQEKEKSEEMVFSCHTAQ 270
Query: 661 EYNKDGWFLDYSYNSHMTRDRNIFTNYKTSNSDNFVKMVGDERLPVRGYGDNTLNFGNNI 840
E D W +D +HM D N+F +S + M G G + +
Sbjct: 271 EEKDDVWVIDSGCTNHMAADPNLFREMDSSYHAK-IHMGNGSIAQSEGKGTVAVQTADGP 329
Query: 841 ITLIDALYIKGL*KNLTSLYKLLTQRY 921
+ D L + L +NL S+ +LL Y
Sbjct: 330 KFIKDVLLVPDLKQNLLSIGQLLEHGY 356
Score = 33.1 bits (74), Expect(3) = 2e-34
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 1040 QNSFFTNIKISNLWHSRLGHNNNEYLSMI--KAAISHGPKNLSPTKVCSSCIIAK 1198
Q + + I IS+LWH R+GH N L ++ K + P + C C+ K
Sbjct: 396 QMALRSEIDISDLWHKRMGHLNYRALKLLRTKGMVQGLPFITLKSDPCEGCVFGK 450
>emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]
Length = 1430
Score = 139 bits (350), Expect(2) = 2e-34
Identities = 77/240 (32%), Positives = 117/240 (48%)
Frame = +3
Query: 1206 KKYFKSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXX 1385
K + K + + CLE+IH+DLCGP+ + G +Y L F++D+S+M W+ L
Sbjct: 595 KPFPKGRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETF 654
Query: 1386 XXXXXXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITE 1565
V+ ++ +L N + E+ PY+P+QNG+ E
Sbjct: 655 ETFKKFKAFVEKQSGKCIKVLRTDRXGEFLSNDFKVFCEEEGLHRELTTPYSPEQNGVAE 714
Query: 1566 RNNRTLVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSIL 1745
R NRT+V+M R +W E V T Y+LN P + + TPY WY KP +
Sbjct: 715 RKNRTVVEMARSMMXAKNLSNHFWAEGVATAVYLLNISPTKAVLNRTPYEAWYGRKPWVS 774
Query: 1746 HLHVFACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVE 1925
HL VF + + R K + K+ + + IGY +SKGYK+ + K+IVSR+ F E
Sbjct: 775 HLKVFGSVAYTLXBSHNRSKLDEKSVKCIFIGYCSQSKGYKLYNPVSGKIIVSRNVVFDE 834
Score = 35.8 bits (81), Expect(2) = 2e-34
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 1070 SNLWHSRLGHNNNEYLSMI--KAAISHGPKNLSPTKVCSSCIIAKLHKKILQK 1222
SNLWH R GH N + L ++ K + PK + VC CI K KK K
Sbjct: 548 SNLWHLRYGHLNVKGLKLLSKKEMVFELPK-IDSVNVCEGCIYGKQSKKPFPK 599
>emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group]
Length = 1314
Score = 127 bits (318), Expect(3) = 3e-34
Identities = 69/225 (30%), Positives = 110/225 (48%)
Frame = +3
Query: 1251 EVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXXXXXXXXVQTETR 1430
E++H+D+ G + + G Y +TF +DY++M W+ L V+ ++
Sbjct: 525 ELVHTDIVGKVPTMSEGGNWYFITFIDDYTRMIWVYFLKEKSAALETFKKFKVMVENQSN 584
Query: 1431 SKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNNRTLVKMIRXXXX 1610
K +L + ++ Y+ QQNG+ ER NRT+ M
Sbjct: 585 RKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTTGYSAQQNGVAERKNRTINDMANSMLQ 644
Query: 1611 XXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLHVFACLCFYHIPK 1790
++W EAV T YILN P + + TP+ WY KP I H+ VFAC+C+ +P
Sbjct: 645 DKGMPKSFWAEAVNTAVYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRVFACICYAQVPA 704
Query: 1791 EQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVE 1925
++R K + K+ R + +GY + KGY++ E KK+I+SRD F E
Sbjct: 705 QKRVKFDNKSNRCIFVGYADGIKGYRLYNLEKKKIIISRDVFFDE 749
Score = 34.3 bits (77), Expect(3) = 3e-34
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +2
Query: 1004 NRMGYLL*NLCLQNSFFTNIKISNLWHSRLGHNNNEYLSMI--KAAISHGPKNLSPTKVC 1177
NR L N Q + + + IS+LWH R+GH N L ++ K + P + C
Sbjct: 440 NRNFLLRMNHTTQMALRSEVDISDLWHKRMGHLNYRALKLLRTKGMVQGLPFITLKSDPC 499
Query: 1178 SSCIIAK 1198
C+ K
Sbjct: 500 EGCVFGK 506
Score = 33.9 bits (76), Expect(3) = 3e-34
Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 3/147 (2%)
Frame = +1
Query: 490 CDRNNHDTKYCFFNAKGPNYKPHMKSKRREPQQSSENNEVNLAKIKQDHMYVFF---TNK 660
C R H KYC ++ E N N ++ K+ + F T +
Sbjct: 288 CKRKGHIAKYC---------------------RTREINRANFSQEKEKSEEMVFSCHTAQ 326
Query: 661 EYNKDGWFLDYSYNSHMTRDRNIFTNYKTSNSDNFVKMVGDERLPVRGYGDNTLNFGNNI 840
E D W +D +HM D N+F + + M G G + +
Sbjct: 327 EEKDDVWVIDSGCTNHMAADPNLFREMDSLYHAK-IHMGNGSIAQSEGKGTVAVQTADGP 385
Query: 841 ITLIDALYIKGL*KNLTSLYKLLTQRY 921
+ D L + L +NL S+ +LL Y
Sbjct: 386 KFIKDVLLVPDLKQNLLSIGQLLEHGY 412
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 110 bits (276), Expect(3) = 3e-34
Identities = 70/237 (29%), Positives = 102/237 (43%)
Frame = +3
Query: 1215 FKSKIKTTRRCLEVIHSDLCGPINPPTM*GKKYILTFSEDYSKMPWINILXXXXXXXXXX 1394
F + TT L+ +HSDL GP + G +Y++T +DYS+ W L
Sbjct: 481 FNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFNVF 540
Query: 1395 XXXXXXVQTETRSKNSMLLLR*WH*IHLNRIQXXXXXXXXXXEVMIPYNPQQNGITERNN 1574
V+ +T K +L + +P+ PQQNG+ ER N
Sbjct: 541 KEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMN 600
Query: 1575 RTLVKMIRXXXXXXXXXTTWWGEAVLTENYILNFIPRRGLNWITPY*VWYNLKPSILHLH 1754
R ++ R +W EAV T Y++N P N TP VW + L
Sbjct: 601 RIIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYA-NKKTPIEVWSGSPANYSDLK 659
Query: 1755 VFACLCFYHIPKEQRGKSNPKAKRGVMIGYNEESKGYKILGEETKKVIVSRDFKFVE 1925
VF C + H+ GK P+A + + +GY KGYK+ ETKKV++SR+ F E
Sbjct: 660 VFGCTAYAHV---DNGKLEPRAIKCIFLGYPSSVKGYKLWCPETKKVVISRNVVFHE 713
Score = 44.7 bits (104), Expect(3) = 3e-34
Identities = 69/310 (22%), Positives = 115/310 (37%), Gaps = 21/310 (6%)
Frame = +1
Query: 55 IWSKLKNVLAGSTASTIARLRNQLHNLRFA*DKSMAKFIQEICEIRDRIDVCEIPLDESE 234
+W KL+ + ++ L+ +L + D S+ + EI ++ E+ DE +
Sbjct: 83 LWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEKD 142
Query: 235 LFYSVPDALPSD*NAFKDSIFLIRNKISFDALCQALLEKK--------QGNTRK------ 372
L + +LPS F+D+I R+ ++ + AL K+ +G+ +
Sbjct: 143 LALILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVV 202
Query: 373 RTSYYEVQYA*NKTIXXXXXXXXXXXXXXXXXXXXXFHICDRNNHDTKYCFFNAKGPNYK 552
R S E + NK+ + C R+ HD C +K
Sbjct: 203 RGSQQE-KNTNNKSRDKSSSSYRGRSKSRGRYKSCKY--CKRDGHDISKC--------WK 251
Query: 553 PHMKSKRR-----EPQQSSENNEVNLAKIKQD-HMYVFFTNKEYNKDGWFLDYSYNSHMT 714
K KR + ++ E + K D + V + D W LD + HM
Sbjct: 252 LQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMC 311
Query: 715 RDRNIFTNYKTSNSDNFVKMVGDERLPVRGYGDNTLN-FGNNIITLIDALYIKGL*KNLT 891
+R+ F Y+ V M D V G G + F I TL D +I L ++L
Sbjct: 312 PNRDWFATYEVVQGGT-VLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLI 370
Query: 892 SLYKLLTQRY 921
SL L + Y
Sbjct: 371 SLCTLDRKGY 380
Score = 39.7 bits (91), Expect(3) = 3e-34
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Frame = +2
Query: 944 GMDKPAAISLAIKKLRLKGLNRMGY----LL*NLCLQNSFFTNIKISNLWHSRLGHNNNE 1111
G+ K SL + K +K N +L N+ + +N +NLWH RLGH +
Sbjct: 387 GILKVTKGSLVVMKASIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEI 446
Query: 1112 YLSMIKAAISHGPKNLSPTKVCSSCIIAKLHKKI 1213
L+ + +++S K C CI K HK++
Sbjct: 447 GLAELSKRGLLDGQSISKLKFCEHCIFGK-HKRV 479