BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00016984
         (489 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002979319.1| hypothetical protein SELMODRAFT_418944 [Sela...    93   3e-17
ref|XP_002988629.1| hypothetical protein SELMODRAFT_447395 [Sela...    93   3e-17
ref|XP_001757939.1| predicted protein [Physcomitrella patens] gi...    84   2e-14
ref|XP_006837050.1| hypothetical protein AMTR_s00110p00061160 [A...    74   3e-11
ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...    72   1e-10
ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III s...    72   1e-10
ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricin...    68   1e-09
gb|ABU45174.1| unknown [Solanum melongena]                             66   4e-09
ref|XP_004232385.1| PREDICTED: uncharacterized protein LOC101252...    65   1e-08
ref|XP_006366085.1| PREDICTED: uncharacterized protein LOC102595...    64   2e-08
ref|XP_006366082.1| PREDICTED: uncharacterized protein LOC102595...    64   2e-08
ref|XP_006355443.1| PREDICTED: DNA-directed RNA polymerase III s...    64   2e-08
ref|XP_006355442.1| PREDICTED: DNA-directed RNA polymerase III s...    64   2e-08
ref|XP_006355441.1| PREDICTED: DNA-directed RNA polymerase III s...    64   2e-08
ref|XP_004245771.1| PREDICTED: DNA-directed RNA polymerase III s...    64   3e-08
ref|XP_002310208.2| hypothetical protein POPTR_0007s12540g [Popu...    63   4e-08
gb|ABU45193.1| unknown [Petunia integrifolia subsp. inflata]           63   4e-08
gb|EXB77882.1| DNA-directed RNA polymerase III subunit RPC5 [Mor...    61   2e-07
gb|AAG01125.1|AF273333_10 BAC19.10 [Solanum lycopersicum]              61   2e-07
gb|ESW29064.1| hypothetical protein PHAVU_002G0404001g, partial ...    60   3e-07

>ref|XP_002979319.1| hypothetical protein SELMODRAFT_418944 [Selaginella moellendorffii]
           gi|300153087|gb|EFJ19727.1| hypothetical protein
           SELMODRAFT_418944 [Selaginella moellendorffii]
          Length = 625

 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 51/102 (50%), Positives = 70/102 (68%), Gaps = 3/102 (2%)
 Frame = -1

Query: 297 KGTAGNKK--EAVKGMAAAKGATAPLGELTSVIDQVASNINGVYFLKSLGNPTIDAYRNV 124
           K  A N K  E    +AAAKGA+AP+ ELT+++D +A+NINGVYFL  LG+PT D +R V
Sbjct: 507 KSQADNVKVEEKASAVAAAKGASAPVAELTAIVDTIATNINGVYFLTQLGDPTQDPFREV 566

Query: 123 VVKLIRAKGPGAVIRKVEVFEACKLEVGD-PSPQIYSKIMKE 1
           V+ L++ K  G  +++ E+ EA KL +   PS Q+Y KIMKE
Sbjct: 567 VIALLKQKSAG--LQRSEIMEAFKLALRKMPSNQLYQKIMKE 606


>ref|XP_002988629.1| hypothetical protein SELMODRAFT_447395 [Selaginella moellendorffii]
           gi|300143736|gb|EFJ10425.1| hypothetical protein
           SELMODRAFT_447395 [Selaginella moellendorffii]
          Length = 625

 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 51/102 (50%), Positives = 70/102 (68%), Gaps = 3/102 (2%)
 Frame = -1

Query: 297 KGTAGNKK--EAVKGMAAAKGATAPLGELTSVIDQVASNINGVYFLKSLGNPTIDAYRNV 124
           K  A N K  E    +AAAKGA+AP+ ELT+++D +A+NINGVYFL  LG+PT D +R V
Sbjct: 507 KSQADNVKVEEKASAVAAAKGASAPVAELTAIVDTIATNINGVYFLTQLGDPTQDPFREV 566

Query: 123 VVKLIRAKGPGAVIRKVEVFEACKLEVGD-PSPQIYSKIMKE 1
           V+ L++ K  G  +++ E+ EA KL +   PS Q+Y KIMKE
Sbjct: 567 VIALLKQKSAG--LQRSEIMEAFKLALRKMPSNQLYQKIMKE 606


>ref|XP_001757939.1| predicted protein [Physcomitrella patens] gi|162690816|gb|EDQ77181.1|
            predicted protein [Physcomitrella patens]
          Length = 832

 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 43/94 (45%), Positives = 58/94 (61%)
 Frame = -1

Query: 282  NKKEAVKGMAAAKGATAPLGELTSVIDQVASNINGVYFLKSLGNPTIDAYRNVVVKLIRA 103
            N K A   +AAAK A AP  ELT+ + +VA+NI GVYFL +L NP +D +R VV+ L+R 
Sbjct: 720  NPKSAAAAVAAAKAANAPASELTAAVCRVATNIGGVYFLTTLNNPALDPFREVVIALLRK 779

Query: 102  KGPGAVIRKVEVFEACKLEVGDPSPQIYSKIMKE 1
             GP A +RK ++  A K    +     Y K+MKE
Sbjct: 780  MGPDAGLRKNDILLAFKSAGREAPSATYLKVMKE 813


>ref|XP_006837050.1| hypothetical protein AMTR_s00110p00061160 [Amborella trichopoda]
           gi|548839643|gb|ERM99903.1| hypothetical protein
           AMTR_s00110p00061160 [Amborella trichopoda]
          Length = 763

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
 Frame = -1

Query: 255 AAAKGATAPLGELTSVIDQVASNINGVYFLKSLGNPTIDAYRNVVVKLIRAKGPGAVIRK 76
           AAA GA A   EL S +++VA NI+GVY LKSL NP +D  R VV+ L+ A  P A ++K
Sbjct: 658 AAAHGAAASDAELLSHVNKVAVNIHGVYALKSLSNPLLDPLREVVISLLCASKPKAKLKK 717

Query: 75  VEVFEACKLEVG--DPSPQIYSKIMKE 1
           VEV +A K++    D  P +Y +++ E
Sbjct: 718 VEVMQAFKIKFNKEDVPPNVYKQVLTE 744


>ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
           subunit RPC5-like [Cucumis sativus]
          Length = 702

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 42/95 (44%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
 Frame = -1

Query: 279 KKEAVKGMAAAKGATAPLGELTSVIDQVASNINGVYFLKSLG-NPTIDAYRNVVVKLIRA 103
           K +A   +AAA G  AP  EL  +I QVA+ I+G+Y L S   +P  D  R VV++L+R 
Sbjct: 589 KADARMAVAAAYGVDAPPDELXKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRG 648

Query: 102 KGPGAVIRKVEVFEACKLEVGDP-SPQIYSKIMKE 1
           +GP AV++K +V EA K E+G   +   YSK+M E
Sbjct: 649 RGPKAVLKKADVLEASKHELGRAINSNEYSKVMNE 683


>ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like
           [Cucumis sativus]
          Length = 702

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 42/95 (44%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
 Frame = -1

Query: 279 KKEAVKGMAAAKGATAPLGELTSVIDQVASNINGVYFLKSLG-NPTIDAYRNVVVKLIRA 103
           K +A   +AAA G  AP  EL  +I QVA+ I+G+Y L S   +P  D  R VV++L+R 
Sbjct: 589 KADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRG 648

Query: 102 KGPGAVIRKVEVFEACKLEVGDP-SPQIYSKIMKE 1
           +GP AV++K +V EA K E+G   +   YSK+M E
Sbjct: 649 RGPKAVLKKADVLEASKHELGRAINSNEYSKVMNE 683


>ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223535571|gb|EEF37239.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 677

 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
 Frame = -1

Query: 258 MAAAKGATAPLGELTSVIDQVASNINGVYFLKSL-GNPTIDAYRNVVVKLIRAKGPGAVI 82
           +AAA GA AP  EL  +I QVA+NI+G Y LKS   +P  D  R V++ L+ A+GP A +
Sbjct: 577 VAAASGADAPPEELQEIISQVATNIHGFYVLKSSPEHPQYDELRKVIIDLLLARGPNAKL 636

Query: 81  RKVEVFEACKL 49
           +K EVFEA +L
Sbjct: 637 KKAEVFEAARL 647


>gb|ABU45174.1| unknown [Solanum melongena]
          Length = 664

 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
 Frame = -1

Query: 285 GNKKEAVKGMAAAKGATAPLGELTSVIDQVASNINGVYFLKSL-GNPTIDAYRNVVVKLI 109
           G+ K+AV G      + AP  E+ +V++++A NI+GVY L+S   NP  DA R VV+ L 
Sbjct: 563 GDSKKAVTGTTGV--SDAPKEEIEAVVNRIAVNIHGVYILRSSPDNPQYDALRKVVIDLF 620

Query: 108 RAKGPGAVIRKVEVFEACKLEVG 40
            A+GP A ++K  + EA KL++G
Sbjct: 621 MAEGPSAKLKKASIIEAAKLQLG 643


>ref|XP_004232385.1| PREDICTED: uncharacterized protein LOC101252245 [Solanum
           lycopersicum]
          Length = 659

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 38/96 (39%), Positives = 60/96 (62%), Gaps = 3/96 (3%)
 Frame = -1

Query: 279 KKEAVKGMAAAKGATAPLG-ELTSVIDQVASNINGVYFLKSL-GNPTIDAYRNVVVKLIR 106
           K++ +K + +  G +  L  E+ +V++Q+A NI+GVY LKS   NP  DA R VV+ L  
Sbjct: 544 KEDPMKAIISPAGISDALRKEIEAVVNQIAVNIHGVYVLKSSPDNPQYDALRKVVIDLFM 603

Query: 105 AKGPGAVIRKVEVFEACKLEVG-DPSPQIYSKIMKE 1
           A+G  A ++K  + EA KL++G D +   + K+MKE
Sbjct: 604 AEGSNAKLKKASIVEAAKLQLGRDVTTVEFQKVMKE 639


>ref|XP_006366085.1| PREDICTED: uncharacterized protein LOC102595101 isoform X4 [Solanum
           tuberosum] gi|565401172|ref|XP_006366086.1| PREDICTED:
           uncharacterized protein LOC102595101 isoform X5 [Solanum
           tuberosum] gi|565401174|ref|XP_006366087.1| PREDICTED:
           uncharacterized protein LOC102595101 isoform X6 [Solanum
           tuberosum]
          Length = 387

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
 Frame = -1

Query: 234 APLGELTSVIDQVASNINGVYFLKSL-GNPTIDAYRNVVVKLIRAKGPGAVIRKVEVFEA 58
           AP  E+ +VI+QVA NI+GVY LKS   NP  D  R VV+ L  A+GP A ++K  V EA
Sbjct: 289 APQEEIQAVINQVAVNIHGVYVLKSSPDNPQYDTLRKVVIDLFMAEGPSAKLKKASVTEA 348

Query: 57  CKLEVG-DPSPQIYSKIMKE 1
            KL++  D +   + K+MKE
Sbjct: 349 AKLQLNRDITNVEFLKVMKE 368


>ref|XP_006366082.1| PREDICTED: uncharacterized protein LOC102595101 isoform X1 [Solanum
           tuberosum] gi|565401166|ref|XP_006366083.1| PREDICTED:
           uncharacterized protein LOC102595101 isoform X2 [Solanum
           tuberosum] gi|565401168|ref|XP_006366084.1| PREDICTED:
           uncharacterized protein LOC102595101 isoform X3 [Solanum
           tuberosum]
          Length = 426

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
 Frame = -1

Query: 234 APLGELTSVIDQVASNINGVYFLKSL-GNPTIDAYRNVVVKLIRAKGPGAVIRKVEVFEA 58
           AP  E+ +VI+QVA NI+GVY LKS   NP  D  R VV+ L  A+GP A ++K  V EA
Sbjct: 328 APQEEIQAVINQVAVNIHGVYVLKSSPDNPQYDTLRKVVIDLFMAEGPSAKLKKASVTEA 387

Query: 57  CKLEVG-DPSPQIYSKIMKE 1
            KL++  D +   + K+MKE
Sbjct: 388 AKLQLNRDITNVEFLKVMKE 407


>ref|XP_006355443.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like
           isoform X3 [Solanum tuberosum]
          Length = 577

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
 Frame = -1

Query: 234 APLGELTSVIDQVASNINGVYFLKSL-GNPTIDAYRNVVVKLIRAKGPGAVIRKVEVFEA 58
           AP  E+ +VI+QVA NI+GVY LKS   NP  D  R VV+ L  A+GP A ++K  V EA
Sbjct: 479 APQEEIQAVINQVAVNIHGVYVLKSSPDNPQYDTLRKVVIDLFMAEGPSAKLKKASVTEA 538

Query: 57  CKLEVG-DPSPQIYSKIMKE 1
            KL++  D +   + K+MKE
Sbjct: 539 AKLQLNRDITNVEFLKVMKE 558


>ref|XP_006355442.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like
           isoform X2 [Solanum tuberosum]
          Length = 657

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
 Frame = -1

Query: 234 APLGELTSVIDQVASNINGVYFLKSL-GNPTIDAYRNVVVKLIRAKGPGAVIRKVEVFEA 58
           AP  E+ +VI+QVA NI+GVY LKS   NP  D  R VV+ L  A+GP A ++K  V EA
Sbjct: 559 APQEEIQAVINQVAVNIHGVYVLKSSPDNPQYDTLRKVVIDLFMAEGPSAKLKKASVTEA 618

Query: 57  CKLEVG-DPSPQIYSKIMKE 1
            KL++  D +   + K+MKE
Sbjct: 619 AKLQLNRDITNVEFLKVMKE 638


>ref|XP_006355441.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like
           isoform X1 [Solanum tuberosum]
          Length = 669

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
 Frame = -1

Query: 234 APLGELTSVIDQVASNINGVYFLKSL-GNPTIDAYRNVVVKLIRAKGPGAVIRKVEVFEA 58
           AP  E+ +VI+QVA NI+GVY LKS   NP  D  R VV+ L  A+GP A ++K  V EA
Sbjct: 571 APQEEIQAVINQVAVNIHGVYVLKSSPDNPQYDTLRKVVIDLFMAEGPSAKLKKASVTEA 630

Query: 57  CKLEVG-DPSPQIYSKIMKE 1
            KL++  D +   + K+MKE
Sbjct: 631 AKLQLNRDITNVEFLKVMKE 650


>ref|XP_004245771.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like
           [Solanum lycopersicum]
          Length = 669

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
 Frame = -1

Query: 234 APLGELTSVIDQVASNINGVYFLKSL-GNPTIDAYRNVVVKLIRAKGPGAVIRKVEVFEA 58
           AP  E+ +VI+QVA NI+GVY LKS   NP  D  R +V+ L  A+GP A ++K  V EA
Sbjct: 571 APQEEIQAVINQVAVNIHGVYVLKSSPDNPQYDTLRKIVIDLFMAEGPSAKLKKASVTEA 630

Query: 57  CKLEVG-DPSPQIYSKIMKE 1
            KL++  D +   + K+MKE
Sbjct: 631 AKLQLNRDITNVEFLKVMKE 650


>ref|XP_002310208.2| hypothetical protein POPTR_0007s12540g [Populus trichocarpa]
           gi|550334731|gb|EEE90658.2| hypothetical protein
           POPTR_0007s12540g [Populus trichocarpa]
          Length = 667

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 42/89 (47%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
 Frame = -1

Query: 258 MAAAKGATAPLGELTSVIDQVASNINGVYFLKSL-GNPTIDAY-RNVVVKLIRAKGPGAV 85
           +AAA GA AP  EL  VI +VA+NI+G Y LKS   +P  D   R VV+ L  A+GP A 
Sbjct: 560 VAAASGAEAPPEELQEVISEVATNIHGFYVLKSSPEHPDFDPLSRKVVIGLFLARGPNAN 619

Query: 84  IRKVEVFEACKLEV-GDPSPQIYSKIMKE 1
           I+K EV  A +LE+  +PS   Y K+M +
Sbjct: 620 IKKSEVQAAARLELKREPSNSEYIKVMTD 648


>gb|ABU45193.1| unknown [Petunia integrifolia subsp. inflata]
          Length = 666

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
 Frame = -1

Query: 285 GNKKEAVKGMAAAKGATAPLGELTSVIDQVASNINGVYFLKSL-GNPTIDAYRNVVVKLI 109
           GN K AV   AA+    AP  EL +VIDQVA NI+G Y LKS   NP  DA R VVV+L+
Sbjct: 568 GNAKGAVA--AASFVDDAPPEELQAVIDQVAFNIHGDYVLKSSPDNPQYDALRKVVVELL 625

Query: 108 RAKGPGAVIRKVEVFEACKLEVG-DPSPQIYSKI 10
             +GP A ++K  + +A K E+  D  P  + K+
Sbjct: 626 IGEGPSAKLKKATIMKAAKSELNRDIPPAEFQKV 659


>gb|EXB77882.1| DNA-directed RNA polymerase III subunit RPC5 [Morus notabilis]
          Length = 732

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
 Frame = -1

Query: 255 AAAKGATAPLGELTSVIDQVASNINGVYFLKSLG-NPTIDAYRNVVVKLIRAKGPGAVIR 79
           AAA G  +P GEL  ++D+ A NI+G+Y LKS   +P  D +RNVV+ L+R  G  A ++
Sbjct: 590 AAACGTASP-GELVKLLDETAINIHGLYVLKSSAEHPQYDPFRNVVIDLLRQNGLAAKLK 648

Query: 78  KVEVFEACK 52
           K E+F+A K
Sbjct: 649 KAEIFDAAK 657


>gb|AAG01125.1|AF273333_10 BAC19.10 [Solanum lycopersicum]
          Length = 683

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 36/95 (37%), Positives = 59/95 (62%), Gaps = 3/95 (3%)
 Frame = -1

Query: 279 KKEAVKGMAAAKGATAPLG-ELTSVIDQVASNINGVYFLKSL-GNPTIDAYRNVVVKLIR 106
           K++ +K + +  G +  L  E+ +V++Q+A NI+GVY LKS   NP  DA R VV+ L  
Sbjct: 535 KEDPMKAIISPAGISDALRKEIEAVVNQIAVNIHGVYVLKSSPDNPQYDALRKVVIDLFM 594

Query: 105 AKGPGAVIRKVEVFEACKLEVG-DPSPQIYSKIMK 4
           A+G  A ++K  + EA KL++G D +   + K+M+
Sbjct: 595 AEGSNAKLKKASIVEAAKLQLGRDVTTVEFQKLMQ 629


>gb|ESW29064.1| hypothetical protein PHAVU_002G0404001g, partial [Phaseolus
           vulgaris]
          Length = 341

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
 Frame = -1

Query: 285 GNKKEAVKGMAAAKGATAPLGELTSVIDQVASNINGVYFLKSLGNPTIDAYRNVVVKLIR 106
           G+ K AV    AA     P  EL +VI++VA  I+G Y LKS  +   D +R+VV+ ++R
Sbjct: 233 GDSKIAVD---AAHSLDGPHNELMAVINEVACEIHGYYVLKSSQD---DPFRDVVIDMLR 286

Query: 105 AKGPGAVIRKVEVFEACKLEVGDPSP-QIYSKIMKE 1
             GP A ++K E+ EA + ++G   P   Y+K+M E
Sbjct: 287 GSGPNAKLKKAEIVEAARRKLGREVPNNEYNKVMSE 322