BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00015058
         (1696 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002879786.1| pseudouridine synthase family protein [Arabi...   324   6e-86
ref|NP_181447.2| protein SUPPRESSOR OF VARIEGATION 1 [Arabidopsi...   324   8e-86
ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine...   322   4e-85
ref|XP_006485600.1| PREDICTED: uncharacterized protein LOC102619...   321   7e-85
ref|XP_006436494.1| hypothetical protein CICLE_v10031516mg [Citr...   321   7e-85
ref|XP_006294188.1| hypothetical protein CARUB_v10023183mg, part...   320   2e-84
gb|EMJ19261.1| hypothetical protein PRUPE_ppa006826mg [Prunus pe...   319   2e-84
gb|EXB96209.1| putative RNA pseudouridine synthase [Morus notabi...   318   4e-84
emb|CBI31423.3| unnamed protein product [Vitis vinifera]              317   8e-84
ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine...   317   8e-84
gb|EOY18774.1| Pseudouridine synthase family protein isoform 2, ...   317   1e-83
ref|XP_004250054.1| PREDICTED: uncharacterized RNA pseudouridine...   316   2e-83
ref|XP_004308770.1| PREDICTED: uncharacterized RNA pseudouridine...   315   4e-83
ref|XP_002311995.2| hypothetical protein POPTR_0008s03540g [Popu...   314   6e-83
gb|EPS61841.1| hypothetical protein M569_12954, partial [Genlise...   314   6e-83
ref|XP_006361680.1| PREDICTED: uncharacterized protein LOC102601...   314   8e-83
ref|XP_006411139.1| hypothetical protein EUTSA_v10016747mg [Eutr...   313   1e-82
ref|XP_003558788.1| PREDICTED: ribosomal large subunit pseudouri...   310   9e-82
ref|XP_001765369.1| predicted protein [Physcomitrella patens] gi...   310   9e-82
gb|EOY18773.1| Pseudouridine synthase family protein isoform 1 [...   310   1e-81

>ref|XP_002879786.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297325625|gb|EFH56045.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 412

 Score =  324 bits (831), Expect = 6e-86
 Identities = 163/261 (62%), Positives = 200/261 (76%), Gaps = 3/261 (1%)
 Frame = +2

Query: 464  AARRFFNDNFREP-ERLSKVLAAAGVASRRGSEEVIFAGRVSVNGVTCNTPQTRVDPFKD 640
            AARRF+N+NF+EP +RLSKVLAAAGVASRR SEE+IF G+V+VNG+ CNTPQTRVDP +D
Sbjct: 148  AARRFYNENFKEPPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGILCNTPQTRVDPSRD 207

Query: 641  SINIDGKSXXXXXXXXXYFALNKPKGYICSSGENCTKSALSLLDPYMKIWIQRNQGASKP 820
             I ++G           YFALNKPKGYICSSGE   KS +SL D Y+  W +RN G  KP
Sbjct: 208  IIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSVISLFDEYLSSWDKRNPGTPKP 267

Query: 821  RLFTVGRLDVATSGLIIVTNDGEFAQKVAHPSSGLTKEYIVSVEGSVSKKQFRMISEGTV 1000
            RLFTVGRLDVAT+GLI+VTNDG+FAQK++HPSS L KEYI +V G + K+    ISEGT+
Sbjct: 268  RLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVGDIHKRHLMAISEGTI 327

Query: 1001 VDGVHCTPVSVEMLEK--DEKKERLRVTVCEGRNHEVRHFMSNAGLKILSLKRVRIGDFK 1174
            V+GVHC P SVE++ K  D  + RLR+ V EGRNHEVR  + NAGL++ SLKRVRIG F+
Sbjct: 328  VEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAGLEVHSLKRVRIGGFR 387

Query: 1175 LPQDLGLGEYQVLSEAAIKKM 1237
            LP DLGLG++  L ++ +K M
Sbjct: 388  LPSDLGLGKHVELKQSELKAM 408


>ref|NP_181447.2| protein SUPPRESSOR OF VARIEGATION 1 [Arabidopsis thaliana]
            gi|21617894|gb|AAM66944.1| unknown [Arabidopsis thaliana]
            gi|26450440|dbj|BAC42334.1| unknown protein [Arabidopsis
            thaliana] gi|330254545|gb|AEC09639.1| pseudouridine
            synthase family protein [Arabidopsis thaliana]
          Length = 410

 Score =  324 bits (830), Expect = 8e-86
 Identities = 163/261 (62%), Positives = 201/261 (77%), Gaps = 3/261 (1%)
 Frame = +2

Query: 464  AARRFFNDNFRE-PERLSKVLAAAGVASRRGSEEVIFAGRVSVNGVTCNTPQTRVDPFKD 640
            AARRF+N+NF+E P+RLSKVLAAAGVASRR SEE+IF G+V+VNG+ CNTPQTRVDP +D
Sbjct: 146  AARRFYNENFKEQPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGILCNTPQTRVDPSRD 205

Query: 641  SINIDGKSXXXXXXXXXYFALNKPKGYICSSGENCTKSALSLLDPYMKIWIQRNQGASKP 820
             I ++G           YFALNKPKGYICSSGE   KSA+SL D Y+  W +RN G  KP
Sbjct: 206  IIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSAISLFDEYLSSWDKRNPGTPKP 265

Query: 821  RLFTVGRLDVATSGLIIVTNDGEFAQKVAHPSSGLTKEYIVSVEGSVSKKQFRMISEGTV 1000
            RLFTVGRLDVAT+GLI+VTNDG+FAQK++HPSS L KEYI +V G + K+    ISEGT+
Sbjct: 266  RLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVGDIHKRHLMAISEGTM 325

Query: 1001 VDGVHCTPVSVEMLEK--DEKKERLRVTVCEGRNHEVRHFMSNAGLKILSLKRVRIGDFK 1174
            V+GVHC P SVE++ K  D  + RLR+ V EGRNHEVR  + NAGL++ SLKRVRIG F+
Sbjct: 326  VEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAGLEVHSLKRVRIGGFR 385

Query: 1175 LPQDLGLGEYQVLSEAAIKKM 1237
            LP DLGLG++  L ++ +K +
Sbjct: 386  LPSDLGLGKHVELKQSELKAL 406


>ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Cucumis sativus] gi|449490423|ref|XP_004158601.1|
            PREDICTED: uncharacterized RNA pseudouridine synthase
            aq_1464-like [Cucumis sativus]
          Length = 398

 Score =  322 bits (824), Expect = 4e-85
 Identities = 164/259 (63%), Positives = 198/259 (76%), Gaps = 3/259 (1%)
 Frame = +2

Query: 464  AARRFFNDNFREP-ERLSKVLAAAGVASRRGSEEVIFAGRVSVNGVTCNTPQTRVDPFKD 640
            AARRF+N+N RE  +RLSKVLAAAGVASRR SEE+IF GRV+VNG  CNTPQTRVDP +D
Sbjct: 134  AARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARD 193

Query: 641  SINIDGKSXXXXXXXXXYFALNKPKGYICSSGENCTKSALSLLDPYMKIWIQRNQGASKP 820
             I ++G           Y ALNKPKGYICSSG+  +KS +SL D Y+K W +   G  KP
Sbjct: 194  IIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKP 253

Query: 821  RLFTVGRLDVATSGLIIVTNDGEFAQKVAHPSSGLTKEYIVSVEGSVSKKQFRMISEGTV 1000
            RLFTVGRLDVAT+GLIIVTNDG+FAQ ++HPSSGL+KEYI +++G+VSK+    ISEGT+
Sbjct: 254  RLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTI 313

Query: 1001 VDGVHCTPVSVEML--EKDEKKERLRVTVCEGRNHEVRHFMSNAGLKILSLKRVRIGDFK 1174
            +DGVHCTP SVE+L  + D  K RLR+ V EGRNHEVR  +  AGL+I SLKRVRIG F+
Sbjct: 314  IDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFR 373

Query: 1175 LPQDLGLGEYQVLSEAAIK 1231
            LP DLGLG Y  L ++ +K
Sbjct: 374  LPSDLGLGSYTELKQSELK 392


>ref|XP_006485600.1| PREDICTED: uncharacterized protein LOC102619728 [Citrus sinensis]
          Length = 401

 Score =  321 bits (822), Expect = 7e-85
 Identities = 162/261 (62%), Positives = 200/261 (76%), Gaps = 3/261 (1%)
 Frame = +2

Query: 464  AARRFFNDNFRE-PERLSKVLAAAGVASRRGSEEVIFAGRVSVNGVTCNTPQTRVDPFKD 640
            AARRF+NDNFR+ PERLSKVLAAAGVASRR SEE+IF G+V+VNG  CNTPQTRVDP +D
Sbjct: 137  AARRFYNDNFRDTPERLSKVLAAAGVASRRSSEELIFQGQVTVNGSVCNTPQTRVDPARD 196

Query: 641  SINIDGKSXXXXXXXXXYFALNKPKGYICSSGENCTKSALSLLDPYMKIWIQRNQGASKP 820
             I ++GK          Y ALNKPKGYICS+GE   KS +SL D Y+K W +RN G  +P
Sbjct: 197  IIYVNGKRLPKKLPPKVYLALNKPKGYICSAGEKEVKSVMSLFDDYLKSWDKRNPGLPRP 256

Query: 821  RLFTVGRLDVATSGLIIVTNDGEFAQKVAHPSSGLTKEYIVSVEGSVSKKQFRMISEGTV 1000
            RLFTVGRLDVAT+GLIIVTNDG+FAQ V+HPSS L KEYI +++G+V+K+    ISEGTV
Sbjct: 257  RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 316

Query: 1001 VDGVHCTPVSVEML--EKDEKKERLRVTVCEGRNHEVRHFMSNAGLKILSLKRVRIGDFK 1174
            ++G HCTP  VE+L  + D  + R+R+ V EGRNHEVR  + NAGLK+ SLKR+RIG F+
Sbjct: 317  IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 376

Query: 1175 LPQDLGLGEYQVLSEAAIKKM 1237
            LP DLG+G +  L ++ +K M
Sbjct: 377  LPSDLGIGMHVELKQSDLKLM 397


>ref|XP_006436494.1| hypothetical protein CICLE_v10031516mg [Citrus clementina]
            gi|557538690|gb|ESR49734.1| hypothetical protein
            CICLE_v10031516mg [Citrus clementina]
          Length = 451

 Score =  321 bits (822), Expect = 7e-85
 Identities = 162/261 (62%), Positives = 200/261 (76%), Gaps = 3/261 (1%)
 Frame = +2

Query: 464  AARRFFNDNFRE-PERLSKVLAAAGVASRRGSEEVIFAGRVSVNGVTCNTPQTRVDPFKD 640
            AARRF+NDNFR+ PERLSKVLAAAGVASRR SEE+IF G+V+VNG  CNTPQTRVDP +D
Sbjct: 187  AARRFYNDNFRDTPERLSKVLAAAGVASRRSSEELIFQGQVTVNGSVCNTPQTRVDPARD 246

Query: 641  SINIDGKSXXXXXXXXXYFALNKPKGYICSSGENCTKSALSLLDPYMKIWIQRNQGASKP 820
             I ++GK          Y ALNKPKGYICS+GE   KS +SL D Y+K W +RN G  +P
Sbjct: 247  IIYVNGKRLPKKLPPKVYLALNKPKGYICSAGEKEVKSVMSLFDDYLKSWDKRNPGLPRP 306

Query: 821  RLFTVGRLDVATSGLIIVTNDGEFAQKVAHPSSGLTKEYIVSVEGSVSKKQFRMISEGTV 1000
            RLFTVGRLDVAT+GLIIVTNDG+FAQ V+HPSS L KEYI +++G+V+K+    ISEGTV
Sbjct: 307  RLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISEGTV 366

Query: 1001 VDGVHCTPVSVEML--EKDEKKERLRVTVCEGRNHEVRHFMSNAGLKILSLKRVRIGDFK 1174
            ++G HCTP  VE+L  + D  + R+R+ V EGRNHEVR  + NAGLK+ SLKR+RIG F+
Sbjct: 367  IEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIGGFR 426

Query: 1175 LPQDLGLGEYQVLSEAAIKKM 1237
            LP DLG+G +  L ++ +K M
Sbjct: 427  LPSDLGIGMHVELKQSDLKLM 447


>ref|XP_006294188.1| hypothetical protein CARUB_v10023183mg, partial [Capsella rubella]
            gi|482562896|gb|EOA27086.1| hypothetical protein
            CARUB_v10023183mg, partial [Capsella rubella]
          Length = 456

 Score =  320 bits (819), Expect = 2e-84
 Identities = 162/259 (62%), Positives = 197/259 (76%), Gaps = 3/259 (1%)
 Frame = +2

Query: 464  AARRFFNDNFREP-ERLSKVLAAAGVASRRGSEEVIFAGRVSVNGVTCNTPQTRVDPFKD 640
            AARRF+N+NF+EP +RLSKVLAAAGVASRR SEE+IF G+V+VNG+ CNTPQTRVDP +D
Sbjct: 192  AARRFYNENFKEPPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGILCNTPQTRVDPSRD 251

Query: 641  SINIDGKSXXXXXXXXXYFALNKPKGYICSSGENCTKSALSLLDPYMKIWIQRNQGASKP 820
             I ++G           YFALNKPKGYICSSGE   KS +SL D YM  W +RN G  KP
Sbjct: 252  IIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEVKSVISLFDEYMASWDKRNPGTPKP 311

Query: 821  RLFTVGRLDVATSGLIIVTNDGEFAQKVAHPSSGLTKEYIVSVEGSVSKKQFRMISEGTV 1000
            RLFTVGRLDVAT+GLIIVTNDG+FAQ+++HPSS L KEYI +V G + K+    ISEGT+
Sbjct: 312  RLFTVGRLDVATTGLIIVTNDGDFAQQLSHPSSSLPKEYITTVVGDIHKRHLMAISEGTI 371

Query: 1001 VDGVHCTPVSVEMLEK--DEKKERLRVTVCEGRNHEVRHFMSNAGLKILSLKRVRIGDFK 1174
            V+GVHC P  VE++ K  D  + RLR+ V EGRNHEVR  + NAGL + SLKRVRIG F+
Sbjct: 372  VEGVHCVPDLVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAGLVVHSLKRVRIGGFR 431

Query: 1175 LPQDLGLGEYQVLSEAAIK 1231
            LP DLGLG++  L ++ +K
Sbjct: 432  LPSDLGLGKHAELKQSELK 450


>gb|EMJ19261.1| hypothetical protein PRUPE_ppa006826mg [Prunus persica]
          Length = 393

 Score =  319 bits (818), Expect = 2e-84
 Identities = 162/261 (62%), Positives = 201/261 (77%), Gaps = 3/261 (1%)
 Frame = +2

Query: 464  AARRFFNDNFREP-ERLSKVLAAAGVASRRGSEEVIFAGRVSVNGVTCNTPQTRVDPFKD 640
            AARRF+N+NFR+  +RLSKVLAAAGVASRR SE++IF G+V+VNG  CNTPQ+RVDP +D
Sbjct: 131  AARRFYNENFRDASQRLSKVLAAAGVASRRSSEQLIFDGKVTVNGSVCNTPQSRVDPGRD 190

Query: 641  SINIDGKSXXXXXXXXXYFALNKPKGYICSSGENCTKSALSLLDPYMKIWIQRNQGASKP 820
             I ++G           Y ALNKPKGYIC+SGEN  KS LSL + Y+K W +RN G  +P
Sbjct: 191  IIYVNGNRLPKRLPPKVYLALNKPKGYICASGEN--KSVLSLFEDYLKTWDKRNSGIPRP 248

Query: 821  RLFTVGRLDVATSGLIIVTNDGEFAQKVAHPSSGLTKEYIVSVEGSVSKKQFRMISEGTV 1000
            RLFTVGRLDVAT+GLIIVTNDG+FAQK++HPSS L+KEYI ++EG VSK+    ISEGTV
Sbjct: 249  RLFTVGRLDVATTGLIIVTNDGDFAQKISHPSSNLSKEYIAAIEGVVSKRHLLAISEGTV 308

Query: 1001 VDGVHCTPVSVEML--EKDEKKERLRVTVCEGRNHEVRHFMSNAGLKILSLKRVRIGDFK 1174
            ++GVHCTP SVE+L  + D  + RLR+ V EGRNHEVR  + NAGL+I SLKRVRIG F+
Sbjct: 309  IEGVHCTPDSVELLPQQPDMSRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFR 368

Query: 1175 LPQDLGLGEYQVLSEAAIKKM 1237
            LP DLGLG++  L +  +  +
Sbjct: 369  LPSDLGLGKHMALKQGDLSAL 389


>gb|EXB96209.1| putative RNA pseudouridine synthase [Morus notabilis]
          Length = 404

 Score =  318 bits (815), Expect = 4e-84
 Identities = 165/261 (63%), Positives = 199/261 (76%), Gaps = 3/261 (1%)
 Frame = +2

Query: 464  AARRFFNDNFREPE-RLSKVLAAAGVASRRGSEEVIFAGRVSVNGVTCNTPQTRVDPFKD 640
            AARRF+N+NFRE + RLSKVLAAAGVASRR SEE+I  GRV+VNG  CNTPQTRVDP KD
Sbjct: 142  AARRFYNENFRESDQRLSKVLAAAGVASRRNSEELILEGRVTVNGSVCNTPQTRVDPAKD 201

Query: 641  SINIDGKSXXXXXXXXXYFALNKPKGYICSSGENCTKSALSLLDPYMKIWIQRNQGASKP 820
             I ++G           Y ALNKPKGYICS G+   KS +SL D Y+KIW +RN G SKP
Sbjct: 202  VIYVNGNRLPKRLPPKVYLALNKPKGYICSVGDK--KSVMSLFDDYLKIWDKRNLGQSKP 259

Query: 821  RLFTVGRLDVATSGLIIVTNDGEFAQKVAHPSSGLTKEYIVSVEGSVSKKQFRMISEGTV 1000
            RLFTVGRLDVAT+GLIIVTNDG+FAQK++HPSS L+KEYI ++EG+VSKK   +ISEGT 
Sbjct: 260  RLFTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLSKEYIATIEGTVSKKHLLVISEGTF 319

Query: 1001 VDGVHCTPVSVEML--EKDEKKERLRVTVCEGRNHEVRHFMSNAGLKILSLKRVRIGDFK 1174
            +DGVHC P SVE+L  + +  + RLRV V +GR HEVR  M NAGL+I SLKRVRIG ++
Sbjct: 320  IDGVHCVPDSVELLPNQPEMPRPRLRVVVHDGRKHEVRELMKNAGLEIHSLKRVRIGGYR 379

Query: 1175 LPQDLGLGEYQVLSEAAIKKM 1237
            LP DLGLG++  L +  +  +
Sbjct: 380  LPSDLGLGKHVELKQGDLSAL 400


>emb|CBI31423.3| unnamed protein product [Vitis vinifera]
          Length = 296

 Score =  317 bits (813), Expect = 8e-84
 Identities = 161/261 (61%), Positives = 201/261 (77%), Gaps = 3/261 (1%)
 Frame = +2

Query: 464  AARRFFNDNFREP-ERLSKVLAAAGVASRRGSEEVIFAGRVSVNGVTCNTPQTRVDPFKD 640
            AARRF+N+NFR+P +RLSKVLAAAGVASRR SEE+IF GRV+VNG  CNTPQTRVDP +D
Sbjct: 32   AARRFYNENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSVCNTPQTRVDPARD 91

Query: 641  SINIDGKSXXXXXXXXXYFALNKPKGYICSSGENCTKSALSLLDPYMKIWIQRNQGASKP 820
             I ++G           Y ALNKPKGYICSSGE  +KS L L D Y+K W ++N G  KP
Sbjct: 92   MIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYLKSWNKQNPGVPKP 151

Query: 821  RLFTVGRLDVATSGLIIVTNDGEFAQKVAHPSSGLTKEYIVSVEGSVSKKQFRMISEGTV 1000
            R+FTVGRLDVAT+GLII+TNDG+FAQK++HPSS L+KEYI +++G V+K+    ISEGTV
Sbjct: 152  RIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNKRHLIAISEGTV 211

Query: 1001 VDGVHCTPVSVEML--EKDEKKERLRVTVCEGRNHEVRHFMSNAGLKILSLKRVRIGDFK 1174
            ++GVHCTP SVE+L  + +  K RLRV V EGRNHEVR  + +AGL+I SLKR+RIG F+
Sbjct: 212  IEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIHSLKRIRIGGFR 271

Query: 1175 LPQDLGLGEYQVLSEAAIKKM 1237
            LP DLG G++  L +  +K +
Sbjct: 272  LPSDLGHGKHVELKQGDLKAL 292


>ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform
            1 [Vitis vinifera]
          Length = 393

 Score =  317 bits (813), Expect = 8e-84
 Identities = 161/261 (61%), Positives = 201/261 (77%), Gaps = 3/261 (1%)
 Frame = +2

Query: 464  AARRFFNDNFREP-ERLSKVLAAAGVASRRGSEEVIFAGRVSVNGVTCNTPQTRVDPFKD 640
            AARRF+N+NFR+P +RLSKVLAAAGVASRR SEE+IF GRV+VNG  CNTPQTRVDP +D
Sbjct: 129  AARRFYNENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSVCNTPQTRVDPARD 188

Query: 641  SINIDGKSXXXXXXXXXYFALNKPKGYICSSGENCTKSALSLLDPYMKIWIQRNQGASKP 820
             I ++G           Y ALNKPKGYICSSGE  +KS L L D Y+K W ++N G  KP
Sbjct: 189  MIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYLKSWNKQNPGVPKP 248

Query: 821  RLFTVGRLDVATSGLIIVTNDGEFAQKVAHPSSGLTKEYIVSVEGSVSKKQFRMISEGTV 1000
            R+FTVGRLDVAT+GLII+TNDG+FAQK++HPSS L+KEYI +++G V+K+    ISEGTV
Sbjct: 249  RIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNKRHLIAISEGTV 308

Query: 1001 VDGVHCTPVSVEML--EKDEKKERLRVTVCEGRNHEVRHFMSNAGLKILSLKRVRIGDFK 1174
            ++GVHCTP SVE+L  + +  K RLRV V EGRNHEVR  + +AGL+I SLKR+RIG F+
Sbjct: 309  IEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIHSLKRIRIGGFR 368

Query: 1175 LPQDLGLGEYQVLSEAAIKKM 1237
            LP DLG G++  L +  +K +
Sbjct: 369  LPSDLGHGKHVELKQGDLKAL 389


>gb|EOY18774.1| Pseudouridine synthase family protein isoform 2, partial [Theobroma
            cacao]
          Length = 398

 Score =  317 bits (811), Expect = 1e-83
 Identities = 161/261 (61%), Positives = 198/261 (75%), Gaps = 3/261 (1%)
 Frame = +2

Query: 464  AARRFFNDNFREP-ERLSKVLAAAGVASRRGSEEVIFAGRVSVNGVTCNTPQTRVDPFKD 640
            AARRF+N+NF EP +RLSKVLAAAGVASRRGSEE+IF G+V+VNG  CN PQTRVDP KD
Sbjct: 134  AARRFYNENFTEPPQRLSKVLAAAGVASRRGSEELIFDGKVTVNGSVCNAPQTRVDPAKD 193

Query: 641  SINIDGKSXXXXXXXXXYFALNKPKGYICSSGENCTKSALSLLDPYMKIWIQRNQGASKP 820
             I ++G           Y ALNKPKGYICSSGE   KS L L + Y+K W + N+G+ KP
Sbjct: 194  IIYVNGSRLPKKLPPKIYLALNKPKGYICSSGEKEFKSVLDLFEDYLKRWDKMNRGSPKP 253

Query: 821  RLFTVGRLDVATSGLIIVTNDGEFAQKVAHPSSGLTKEYIVSVEGSVSKKQFRMISEGTV 1000
            RLFTVGRLDVAT+GLIIVTNDG+FAQK++HPSS L KEYI +++G V K+    ISEGT 
Sbjct: 254  RLFTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLNKEYIATIDGEVKKRHLIAISEGTE 313

Query: 1001 VDGVHCTPVSVEML--EKDEKKERLRVTVCEGRNHEVRHFMSNAGLKILSLKRVRIGDFK 1174
            ++G+HC P SVE+L  + D  + RLR+ V EGRNHEVR  + NAGL+I SLKRVRIG F+
Sbjct: 314  IEGIHCIPDSVELLPRQPDLSRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFR 373

Query: 1175 LPQDLGLGEYQVLSEAAIKKM 1237
            LP DLGLG++  L ++ ++ M
Sbjct: 374  LPADLGLGKHVELKQSDLRAM 394


>ref|XP_004250054.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Solanum lycopersicum]
          Length = 414

 Score =  316 bits (809), Expect = 2e-83
 Identities = 157/261 (60%), Positives = 200/261 (76%), Gaps = 3/261 (1%)
 Frame = +2

Query: 464  AARRFFNDNFREP-ERLSKVLAAAGVASRRGSEEVIFAGRVSVNGVTCNTPQTRVDPFKD 640
            AARRF+N+NFR+P +RLSKVLAAAGVASRR SEE+IF GRV+VNG  C TPQT+VDP +D
Sbjct: 150  AARRFYNENFRDPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCKTPQTKVDPARD 209

Query: 641  SINIDGKSXXXXXXXXXYFALNKPKGYICSSGENCTKSALSLLDPYMKIWIQRNQGASKP 820
             I ++G           Y ALNKPKGYICSSGE  TKS +SL D ++K W +R+ G  KP
Sbjct: 210  VIYVNGNRLPKKLPTKVYLALNKPKGYICSSGEKETKSVMSLFDDFIKSWDKRHPGQPKP 269

Query: 821  RLFTVGRLDVATSGLIIVTNDGEFAQKVAHPSSGLTKEYIVSVEGSVSKKQFRMISEGTV 1000
            RLFTVGRLDVAT+GLIIVTNDGEF  +++HPSS L+KEYI +++G V K+    ISEGT+
Sbjct: 270  RLFTVGRLDVATTGLIIVTNDGEFTHQISHPSSNLSKEYIATIDGEVHKRHLIAISEGTI 329

Query: 1001 VDGVHCTPVSVEML--EKDEKKERLRVTVCEGRNHEVRHFMSNAGLKILSLKRVRIGDFK 1174
            +DGVHCTP +VE+L  + D  + RLR+ V EGRNHEVR  + NAGL++ +LKR+RIG F+
Sbjct: 330  IDGVHCTPDNVELLPGQPDLSRPRLRIVVHEGRNHEVRELVKNAGLQLRALKRIRIGGFR 389

Query: 1175 LPQDLGLGEYQVLSEAAIKKM 1237
            LP DL LG++  L++A +K +
Sbjct: 390  LPADLALGKHVELNQANLKAL 410


>ref|XP_004308770.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Fragaria vesca subsp. vesca]
          Length = 397

 Score =  315 bits (807), Expect = 4e-83
 Identities = 160/260 (61%), Positives = 196/260 (75%), Gaps = 2/260 (0%)
 Frame = +2

Query: 464  AARRFFNDNFREPERLSKVLAAAGVASRRGSEEVIFAGRVSVNGVTCNTPQTRVDPFKDS 643
            AARRF+N+NFRE +RLSKVLAAAGVASRR SE++IF G+V+VNG  CNTPQT VDP +D 
Sbjct: 127  AARRFYNENFRESQRLSKVLAAAGVASRRSSEQLIFDGKVTVNGSVCNTPQTPVDPGRDI 186

Query: 644  INIDGKSXXXXXXXXXYFALNKPKGYICSSGENCTKSALSLLDPYMKIWIQRNQGASKPR 823
            I ++G           Y ALNKPKGYIC++GE   KS LSL D Y+K W +RN G  +PR
Sbjct: 187  IYVNGNRLPKKLPPKVYLALNKPKGYICAAGEK--KSVLSLFDDYLKSWDKRNPGTPRPR 244

Query: 824  LFTVGRLDVATSGLIIVTNDGEFAQKVAHPSSGLTKEYIVSVEGSVSKKQFRMISEGTVV 1003
            LFTVGRLDVAT+GLI+VTNDG+FAQ ++HPS+ LTKEYI  +EGSVSKK    ISEGTV+
Sbjct: 245  LFTVGRLDVATTGLIVVTNDGDFAQSISHPSANLTKEYIAVIEGSVSKKSLIAISEGTVI 304

Query: 1004 DGVHCTPVSVEML--EKDEKKERLRVTVCEGRNHEVRHFMSNAGLKILSLKRVRIGDFKL 1177
            DGVHCTP SVE+L  + +  + RLR+ V EGRNHEVR  +  AGL+I SLKRVRIG F+L
Sbjct: 305  DGVHCTPDSVELLPQQPEISRSRLRIVVHEGRNHEVRELVKKAGLEIHSLKRVRIGGFRL 364

Query: 1178 PQDLGLGEYQVLSEAAIKKM 1237
            P +LGLG +  L +  +  +
Sbjct: 365  PTNLGLGTHMELRQGDLSAL 384


>ref|XP_002311995.2| hypothetical protein POPTR_0008s03540g [Populus trichocarpa]
            gi|550332354|gb|EEE89362.2| hypothetical protein
            POPTR_0008s03540g [Populus trichocarpa]
          Length = 397

 Score =  314 bits (805), Expect = 6e-83
 Identities = 160/261 (61%), Positives = 198/261 (75%), Gaps = 3/261 (1%)
 Frame = +2

Query: 464  AARRFFNDNFREP-ERLSKVLAAAGVASRRGSEEVIFAGRVSVNGVTCNTPQTRVDPFKD 640
            AARRF+N+NFR+  +RLSKVLAAAGVASRR SE +IF G+V+VNG  CNTPQTRVDP +D
Sbjct: 133  AARRFYNENFRDQAQRLSKVLAAAGVASRRSSEALIFEGKVTVNGSVCNTPQTRVDPGRD 192

Query: 641  SINIDGKSXXXXXXXXXYFALNKPKGYICSSGENCTKSALSLLDPYMKIWIQRNQGASKP 820
            +I ++G           Y ALNKPKGYICS GE  +KS + LLD Y + W +RN G  KP
Sbjct: 193  AIYVNGNRLPKKLPPKIYIALNKPKGYICSLGEKESKSVMCLLDDYFQSWDKRNPGLPKP 252

Query: 821  RLFTVGRLDVATSGLIIVTNDGEFAQKVAHPSSGLTKEYIVSVEGSVSKKQFRMISEGTV 1000
            RLFTVGRLDVAT+GLIIVTNDG+FAQ++AHPSS L+KEYI +V+G VSK+    +SEGTV
Sbjct: 253  RLFTVGRLDVATTGLIIVTNDGDFAQQIAHPSSNLSKEYIATVDGVVSKRHLFAVSEGTV 312

Query: 1001 VDGVHCTPVSVEML--EKDEKKERLRVTVCEGRNHEVRHFMSNAGLKILSLKRVRIGDFK 1174
            ++GV C P SVE+L  + D  + RLR+ V EGRNHEVR  + NAGL+I SLKRVRIG F+
Sbjct: 313  IEGVRCVPDSVELLPQQPDRPRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFR 372

Query: 1175 LPQDLGLGEYQVLSEAAIKKM 1237
            LP DLGLG++  L +  +K +
Sbjct: 373  LPSDLGLGKHAELKQTDLKTL 393


>gb|EPS61841.1| hypothetical protein M569_12954, partial [Genlisea aurea]
          Length = 273

 Score =  314 bits (805), Expect = 6e-83
 Identities = 160/261 (61%), Positives = 199/261 (76%), Gaps = 3/261 (1%)
 Frame = +2

Query: 464  AARRFFNDNFREP-ERLSKVLAAAGVASRRGSEEVIFAGRVSVNGVTCNTPQTRVDPFKD 640
            AARRF+N+ FREP +RL+KVLA+AGVASRR  EE+IF G+VSVNG  C TPQTRVDP +D
Sbjct: 7    AARRFYNERFREPPQRLAKVLASAGVASRRSCEELIFQGKVSVNGSVCKTPQTRVDPGQD 66

Query: 641  SINIDGKSXXXXXXXXXYFALNKPKGYICSSGENCTKSALSLLDPYMKIWIQRNQGASKP 820
             I ++G           Y ALNKPKGYICS GE  TKS +SLLD + K W +RN G  +P
Sbjct: 67   VIYVNGCRLAKKLPPKVYLALNKPKGYICSVGEKETKSVISLLDDFTKSWRRRNPGVPQP 126

Query: 821  RLFTVGRLDVATSGLIIVTNDGEFAQKVAHPSSGLTKEYIVSVEGSVSKKQFRMISEGTV 1000
            RLFTVGRLDVATSGLIIVTNDGEFA K++HPSS L+KEYI ++ G+VSK+    IS+GT 
Sbjct: 127  RLFTVGRLDVATSGLIIVTNDGEFANKISHPSSNLSKEYIATINGTVSKQSLLTISKGTT 186

Query: 1001 VDGVHCTPVSVEML--EKDEKKERLRVTVCEGRNHEVRHFMSNAGLKILSLKRVRIGDFK 1174
            +DGVHCTP SVE+L  + D  K R+R+ V EGR HEVR  + NAGL+I +LKRVRIG F+
Sbjct: 187  IDGVHCTPDSVELLPPQPDVSKPRIRIVVHEGRKHEVRELVENAGLQIHALKRVRIGGFR 246

Query: 1175 LPQDLGLGEYQVLSEAAIKKM 1237
            LP+DLGLG++  L++A ++ +
Sbjct: 247  LPRDLGLGKHVELNDANLRAL 267


>ref|XP_006361680.1| PREDICTED: uncharacterized protein LOC102601559 [Solanum tuberosum]
          Length = 413

 Score =  314 bits (804), Expect = 8e-83
 Identities = 157/261 (60%), Positives = 199/261 (76%), Gaps = 3/261 (1%)
 Frame = +2

Query: 464  AARRFFNDNFREP-ERLSKVLAAAGVASRRGSEEVIFAGRVSVNGVTCNTPQTRVDPFKD 640
            AARRF+N+NFR+P +RLSKVLAAAGVASRR SEE+IF GRV+VNG  C TPQT+VDP +D
Sbjct: 149  AARRFYNENFRDPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCKTPQTKVDPARD 208

Query: 641  SINIDGKSXXXXXXXXXYFALNKPKGYICSSGENCTKSALSLLDPYMKIWIQRNQGASKP 820
             I ++G           Y ALNKPKGYICSSGE  TKS +SL D ++K W +R+ G  KP
Sbjct: 209  VIYVNGNRLPKKLPTKVYLALNKPKGYICSSGEKETKSVMSLFDDFIKSWDKRHPGQPKP 268

Query: 821  RLFTVGRLDVATSGLIIVTNDGEFAQKVAHPSSGLTKEYIVSVEGSVSKKQFRMISEGTV 1000
            RLFTVGRLDVAT+GLIIVTNDGEF  +++HPSS L+KEYI +++G V K+    ISEGTV
Sbjct: 269  RLFTVGRLDVATTGLIIVTNDGEFTHQISHPSSNLSKEYIATIDGEVHKRHLIAISEGTV 328

Query: 1001 VDGVHCTPVSVEML--EKDEKKERLRVTVCEGRNHEVRHFMSNAGLKILSLKRVRIGDFK 1174
            +DGVHC P +VE+L  + D  + RLR+ V EGRNHEVR  + NAGL++ +LKR+RIG F+
Sbjct: 329  IDGVHCIPDNVELLPGQPDLSRPRLRIVVHEGRNHEVRELVKNAGLQLRALKRIRIGGFR 388

Query: 1175 LPQDLGLGEYQVLSEAAIKKM 1237
            LP DL LG++  L++A +K +
Sbjct: 389  LPADLALGKHVELNQANLKAL 409


>ref|XP_006411139.1| hypothetical protein EUTSA_v10016747mg [Eutrema salsugineum]
            gi|557112308|gb|ESQ52592.1| hypothetical protein
            EUTSA_v10016747mg [Eutrema salsugineum]
          Length = 403

 Score =  313 bits (803), Expect = 1e-82
 Identities = 159/261 (60%), Positives = 196/261 (75%), Gaps = 3/261 (1%)
 Frame = +2

Query: 464  AARRFFNDNFREP-ERLSKVLAAAGVASRRGSEEVIFAGRVSVNGVTCNTPQTRVDPFKD 640
            AARRF+N+NF++P +RLSKVLAAAGVASRR SEE+IF G+V+VNG  C  PQ RVDP +D
Sbjct: 139  AARRFYNENFKDPPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGSLCTAPQIRVDPTRD 198

Query: 641  SINIDGKSXXXXXXXXXYFALNKPKGYICSSGENCTKSALSLLDPYMKIWIQRNQGASKP 820
             I ++G           YFALNKPKGYICSSGE   KS +SL D ++  W +RN G  KP
Sbjct: 199  IIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEVKSVISLFDDFLASWDKRNPGTPKP 258

Query: 821  RLFTVGRLDVATSGLIIVTNDGEFAQKVAHPSSGLTKEYIVSVEGSVSKKQFRMISEGTV 1000
            RLFTVGRLDVAT+GLI+VTNDG+FAQK++HPSS L KEYI +V G V K+    ISEGT+
Sbjct: 259  RLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVGDVHKRHLMTISEGTI 318

Query: 1001 VDGVHCTPVSVEMLEK--DEKKERLRVTVCEGRNHEVRHFMSNAGLKILSLKRVRIGDFK 1174
            V+GVHC P SVE++ K  D  + RLR+ V EGRNHEVR  + NAGL++ SLKRVRIG F+
Sbjct: 319  VEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVREIVKNAGLEVHSLKRVRIGGFR 378

Query: 1175 LPQDLGLGEYQVLSEAAIKKM 1237
            LP DLGLG++  L ++ +K M
Sbjct: 379  LPSDLGLGKHVELKQSELKAM 399


>ref|XP_003558788.1| PREDICTED: ribosomal large subunit pseudouridine synthase B-like
            [Brachypodium distachyon]
          Length = 405

 Score =  310 bits (795), Expect = 9e-82
 Identities = 165/264 (62%), Positives = 198/264 (75%), Gaps = 4/264 (1%)
 Frame = +2

Query: 464  AARRFFNDNFRE--PERLSKVLAAAGVASRRGSEEVIFAGRVSVNGVTCNTPQTRVDPFK 637
            AARRF+N+N RE  P+RL+KVLAAAGVASRR SEE+IF G+V+VNG  C +PQT+VD  K
Sbjct: 141  AARRFYNENIREHEPQRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVCTSPQTKVDISK 200

Query: 638  DSINIDGKSXXXXXXXXXYFALNKPKGYICSSGENCTKSALSLLDPYMKIWIQRNQGASK 817
            DSI ++G           YFA+NKPKGYICSSGE  +KS +SLLD Y+K W +   G  K
Sbjct: 201  DSIYVNGNRISKKLPPKLYFAVNKPKGYICSSGEE-SKSVISLLDDYLKGWNKIQPGIPK 259

Query: 818  PRLFTVGRLDVATSGLIIVTNDGEFAQKVAHPSSGLTKEYIVSVEGSVSKKQFRMISEGT 997
            PRLFTVGRLDVAT+GLIIVTNDGEFAQKVAHPSS +TKEY+V+++G+V KK    ISEGT
Sbjct: 260  PRLFTVGRLDVATTGLIIVTNDGEFAQKVAHPSSNITKEYVVTIDGAVHKKHLVAISEGT 319

Query: 998  VVDGVHCTPVSVEML--EKDEKKERLRVTVCEGRNHEVRHFMSNAGLKILSLKRVRIGDF 1171
             VDGV   P  VE L  + D K+ RLR+ V EGRNHEVR  + NAGLK+ +LKRVRIG F
Sbjct: 320  KVDGVKVVPDLVEPLDAQPDAKRTRLRIVVHEGRNHEVRELVQNAGLKVYALKRVRIGRF 379

Query: 1172 KLPQDLGLGEYQVLSEAAIKKMVG 1243
            +LP DLG+G+   L EA IK + G
Sbjct: 380  RLPADLGIGKMVELKEADIKSLEG 403


>ref|XP_001765369.1| predicted protein [Physcomitrella patens] gi|162683422|gb|EDQ69832.1|
            predicted protein [Physcomitrella patens]
          Length = 560

 Score =  310 bits (795), Expect = 9e-82
 Identities = 155/255 (60%), Positives = 197/255 (77%), Gaps = 3/255 (1%)
 Frame = +2

Query: 464  AARRFFNDNFR-EPERLSKVLAAAGVASRRGSEEVIFAGRVSVNGVTCNTPQTRVDPFKD 640
            AARRF+N+ +R E ERLSKVLAAAGVASRRGSE++IFAGRV VNG  C  PQT V+P KD
Sbjct: 228  AARRFYNETYRAECERLSKVLAAAGVASRRGSEDIIFAGRVKVNGKVCTVPQTPVNPLKD 287

Query: 641  SINIDGKSXXXXXXXXXYFALNKPKGYICSSGENCTKSALSLLDPYMKIWIQRNQGASKP 820
            +I +DG+S         YFALNKPKGYICSS ++  K ALSLL+ Y KIW ++N G S+P
Sbjct: 288  TIFLDGRSLPKKPPPKFYFALNKPKGYICSSAKDAPKPALSLLEDYWKIWDKKNPGVSRP 347

Query: 821  RLFTVGRLDVATSGLIIVTNDGEFAQKVAHPSSGLTKEYIVSVEGSVSKKQFRMISEGTV 1000
            RLFTVGRLDVATSGL+++TNDG+FAQ+V+HPSSGLTKEYI +V   V+K+Q ++I+ GT 
Sbjct: 348  RLFTVGRLDVATSGLLLITNDGDFAQRVSHPSSGLTKEYIATVTERVTKRQLQLIAGGTK 407

Query: 1001 VDGVHCTPVSVEML--EKDEKKERLRVTVCEGRNHEVRHFMSNAGLKILSLKRVRIGDFK 1174
            V  VHC P  VE+L  E  + + R+R+ VCEGRN EVR  ++NAGL++L+LKRVRIG   
Sbjct: 408  VQDVHCVPTEVELLPPEPGDARNRIRIVVCEGRNREVRELVANAGLEVLALKRVRIGGLS 467

Query: 1175 LPQDLGLGEYQVLSE 1219
            L + L  G+++VL+E
Sbjct: 468  LSRKLSPGKFEVLTE 482


>gb|EOY18773.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
          Length = 453

 Score =  310 bits (794), Expect = 1e-81
 Identities = 161/267 (60%), Positives = 198/267 (74%), Gaps = 9/267 (3%)
 Frame = +2

Query: 464  AARRFFNDNFREP-ERLSKVLAAAGVASRRGSEEVIFAGRVSVNGVTCNTPQ------TR 622
            AARRF+N+NF EP +RLSKVLAAAGVASRRGSEE+IF G+V+VNG  CN PQ      TR
Sbjct: 183  AARRFYNENFTEPPQRLSKVLAAAGVASRRGSEELIFDGKVTVNGSVCNAPQASDNLQTR 242

Query: 623  VDPFKDSINIDGKSXXXXXXXXXYFALNKPKGYICSSGENCTKSALSLLDPYMKIWIQRN 802
            VDP KD I ++G           Y ALNKPKGYICSSGE   KS L L + Y+K W + N
Sbjct: 243  VDPAKDIIYVNGSRLPKKLPPKIYLALNKPKGYICSSGEKEFKSVLDLFEDYLKRWDKMN 302

Query: 803  QGASKPRLFTVGRLDVATSGLIIVTNDGEFAQKVAHPSSGLTKEYIVSVEGSVSKKQFRM 982
            +G+ KPRLFTVGRLDVAT+GLIIVTNDG+FAQK++HPSS L KEYI +++G V K+    
Sbjct: 303  RGSPKPRLFTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLNKEYIATIDGEVKKRHLIA 362

Query: 983  ISEGTVVDGVHCTPVSVEML--EKDEKKERLRVTVCEGRNHEVRHFMSNAGLKILSLKRV 1156
            ISEGT ++G+HC P SVE+L  + D  + RLR+ V EGRNHEVR  + NAGL+I SLKRV
Sbjct: 363  ISEGTEIEGIHCIPDSVELLPRQPDLSRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRV 422

Query: 1157 RIGDFKLPQDLGLGEYQVLSEAAIKKM 1237
            RIG F+LP DLGLG++  L ++ ++ M
Sbjct: 423  RIGGFRLPADLGLGKHVELKQSDLRAM 449