BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra25_contig00014547
         (517 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_001779855.1| predicted protein [Physcomitrella patens] gi...   107   2e-21
ref|XP_002963309.1| hypothetical protein SELMODRAFT_405094 [Sela...   103   2e-20
ref|XP_002974602.1| hypothetical protein SELMODRAFT_174352 [Sela...   103   2e-20
ref|XP_002504557.1| predicted protein [Micromonas sp. RCC299] gi...    87   2e-15
ref|WP_006170396.1| peptide chain release factor 3 [Synechococcu...    84   2e-14
ref|YP_003137750.1| peptide chain release factor 3 [Cyanothece s...    83   4e-14
ref|YP_007045203.1| peptide chain release factor 3 [Cyanobium gr...    82   9e-14
ref|YP_002372192.1| peptide chain release factor 3 [Cyanothece s...    82   9e-14
ref|WP_017662466.1| peptide chain release factor 3 [Geitlerinema...    81   2e-13
ref|YP_007099265.1| peptide chain release factor 3 [Chamaesiphon...    80   4e-13
ref|WP_010309429.1| peptide chain release factor 3 [Synechococcu...    80   4e-13
ref|NP_440833.1| peptide chain release factor 3 [Synechocystis s...    79   6e-13
ref|WP_010317536.1| peptide chain release factor 3 [Synechococcu...    79   8e-13
ref|WP_006910463.1| peptide chain release factor 3 [Cyanobium sp...    78   1e-12
ref|YP_001734946.1| peptide chain release factor 3 [Synechococcu...    78   1e-12
ref|XP_003059819.1| predicted protein [Micromonas pusilla CCMP15...    77   2e-12
ref|WP_009789853.1| peptide chain release factor 3 [Synechococcu...    77   2e-12
ref|YP_007069642.1| peptide chain release factor 3 (bRF-3) [Lept...    77   2e-12
ref|NP_894623.1| peptide chain release factor 3 [Prochlorococcus...    77   2e-12
ref|WP_006106022.1| peptide chain release factor 3 [Coleofascicu...    77   2e-12

>ref|XP_001779855.1| predicted protein [Physcomitrella patens]
           gi|162668767|gb|EDQ55368.1| predicted protein
           [Physcomitrella patens]
          Length = 233

 Score =  107 bits (267), Expect = 2e-21
 Identities = 46/65 (70%), Positives = 52/65 (80%)
 Frame = -3

Query: 515 PLNFSIARWVVRGWPALEKAGELYGCAVVKDMWERPVLLFRNEWNVSHLMSDKQEIGELK 336
           PL+FS+ARWV  GWPALEK G ++ C+ VKD W RPVLLFRNEWNVS L+ D  EIGEL 
Sbjct: 161 PLSFSVARWVTGGWPALEKVGRIFNCSTVKDQWGRPVLLFRNEWNVSQLLGDHPEIGELA 220

Query: 335 PYALP 321
           PYALP
Sbjct: 221 PYALP 225


>ref|XP_002963309.1| hypothetical protein SELMODRAFT_405094 [Selaginella moellendorffii]
           gi|300168577|gb|EFJ35180.1| hypothetical protein
           SELMODRAFT_405094 [Selaginella moellendorffii]
          Length = 613

 Score =  103 bits (258), Expect = 2e-20
 Identities = 44/65 (67%), Positives = 52/65 (80%)
 Frame = -3

Query: 515 PLNFSIARWVVRGWPALEKAGELYGCAVVKDMWERPVLLFRNEWNVSHLMSDKQEIGELK 336
           PL +S+ARWV  GWPA+EKAG LY C VVKD W RPVLLFRNEWN++ LM D ++IG+L 
Sbjct: 542 PLGYSVARWVTGGWPAIEKAGRLYNCMVVKDQWGRPVLLFRNEWNLTQLMGDNKDIGDLV 601

Query: 335 PYALP 321
           P ALP
Sbjct: 602 PIALP 606


>ref|XP_002974602.1| hypothetical protein SELMODRAFT_174352 [Selaginella moellendorffii]
           gi|300157497|gb|EFJ24122.1| hypothetical protein
           SELMODRAFT_174352 [Selaginella moellendorffii]
          Length = 613

 Score =  103 bits (258), Expect = 2e-20
 Identities = 44/65 (67%), Positives = 52/65 (80%)
 Frame = -3

Query: 515 PLNFSIARWVVRGWPALEKAGELYGCAVVKDMWERPVLLFRNEWNVSHLMSDKQEIGELK 336
           PL +S+ARWV  GWPA+EKAG LY C VVKD W RPVLLFRNEWN++ LM D ++IG+L 
Sbjct: 542 PLGYSVARWVTGGWPAIEKAGRLYNCMVVKDQWGRPVLLFRNEWNLTQLMGDNKDIGDLV 601

Query: 335 PYALP 321
           P ALP
Sbjct: 602 PIALP 606


>ref|XP_002504557.1| predicted protein [Micromonas sp. RCC299]
           gi|226519825|gb|ACO65815.1| predicted protein
           [Micromonas sp. RCC299]
          Length = 561

 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 34/65 (52%), Positives = 50/65 (76%)
 Frame = -3

Query: 515 PLNFSIARWVVRGWPALEKAGELYGCAVVKDMWERPVLLFRNEWNVSHLMSDKQEIGELK 336
           PL F++ARWVV GW A++ AG ++    VKD+W +PVLLF+N+WNV  +++D  EIGEL 
Sbjct: 493 PLPFAVARWVVGGWDAIDAAGRIFNAQCVKDIWGQPVLLFKNQWNVDQIVADTPEIGELS 552

Query: 335 PYALP 321
           P+++P
Sbjct: 553 PFSIP 557


>ref|WP_006170396.1| peptide chain release factor 3 [Synechococcus sp. WH 5701]
           gi|87283105|gb|EAQ75061.1| peptide chain release factor
           3 [Synechococcus sp. WH 5701]
          Length = 552

 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 33/56 (58%), Positives = 42/56 (75%)
 Frame = -3

Query: 515 PLNFSIARWVVRGWPALEKAGELYGCAVVKDMWERPVLLFRNEWNVSHLMSDKQEI 348
           PL FS+ARWVV GWPALE  G ++ C  V+D W+RPVLLF+NEWN++ L  D  E+
Sbjct: 480 PLGFSVARWVVGGWPALESVGRIFNCKTVRDAWDRPVLLFKNEWNLNQLKEDHPEL 535


>ref|YP_003137750.1| peptide chain release factor 3 [Cyanothece sp. PCC 8802]
           gi|506264171|ref|WP_015783946.1| peptide chain release
           factor 3 [Cyanothece sp. PCC 8802]
           gi|256590028|gb|ACV00915.1| peptide chain release factor
           3 [Cyanothece sp. PCC 8802]
          Length = 539

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 34/57 (59%), Positives = 44/57 (77%)
 Frame = -3

Query: 515 PLNFSIARWVVRGWPALEKAGELYGCAVVKDMWERPVLLFRNEWNVSHLMSDKQEIG 345
           PL +S+ARWV  GW ALEKAG ++    VKD WERPVLLF+NEWN++ + +DK E+G
Sbjct: 470 PLPYSVARWVTGGWTALEKAGRIFNSMTVKDNWERPVLLFKNEWNLNQVKADKPELG 526


>ref|YP_007045203.1| peptide chain release factor 3 [Cyanobium gracile PCC 6307]
           gi|504921214|ref|WP_015108316.1| peptide chain release
           factor 3 [Cyanobium gracile] gi|427345149|gb|AFY27862.1|
           peptide chain release factor 3 [Cyanobium gracile PCC
           6307]
          Length = 550

 Score = 81.6 bits (200), Expect = 9e-14
 Identities = 32/56 (57%), Positives = 41/56 (73%)
 Frame = -3

Query: 515 PLNFSIARWVVRGWPALEKAGELYGCAVVKDMWERPVLLFRNEWNVSHLMSDKQEI 348
           PL FS+ARWV  GWPALE+ G L+ C  V+D W+RPVLLFRN+WN+  L  D  ++
Sbjct: 478 PLEFSVARWVSGGWPALERVGRLFNCKTVRDAWDRPVLLFRNDWNLHQLQEDHPDL 533


>ref|YP_002372192.1| peptide chain release factor 3 [Cyanothece sp. PCC 8801]
           gi|501591446|ref|WP_012595306.1| peptide chain release
           factor 3 [Cyanothece sp. PCC 8801]
           gi|254790926|sp|B7JYV9.1|RF3_CYAP8 RecName: Full=Peptide
           chain release factor 3; Short=RF-3
           gi|218167299|gb|ACK66036.1| peptide chain release factor
           3 [Cyanothece sp. PCC 8801]
          Length = 539

 Score = 81.6 bits (200), Expect = 9e-14
 Identities = 33/57 (57%), Positives = 44/57 (77%)
 Frame = -3

Query: 515 PLNFSIARWVVRGWPALEKAGELYGCAVVKDMWERPVLLFRNEWNVSHLMSDKQEIG 345
           PL +S+ARWV  GW ALEKAG ++    VKD W+RPVLLF+NEWN++ + +DK E+G
Sbjct: 470 PLPYSVARWVTGGWTALEKAGRIFNSMTVKDNWDRPVLLFKNEWNLNQVKADKPELG 526


>ref|WP_017662466.1| peptide chain release factor 3 [Geitlerinema sp. PCC 7105]
          Length = 586

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 34/56 (60%), Positives = 41/56 (73%)
 Frame = -3

Query: 515 PLNFSIARWVVRGWPALEKAGELYGCAVVKDMWERPVLLFRNEWNVSHLMSDKQEI 348
           PL FS+ARWV  GW ALEKAG L+    VKD WERPVLLFRN+WNV+ +  D  ++
Sbjct: 514 PLPFSVARWVTGGWDALEKAGRLFNTVTVKDSWERPVLLFRNDWNVAQVQGDHPDL 569


>ref|YP_007099265.1| peptide chain release factor 3 [Chamaesiphon minutus PCC 6605]
           gi|504974726|ref|WP_015161828.1| peptide chain release
           factor 3 [Chamaesiphon minutus]
           gi|428019644|gb|AFY95738.1| peptide chain release factor
           3 [Chamaesiphon minutus PCC 6605]
          Length = 546

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 31/52 (59%), Positives = 41/52 (78%)
 Frame = -3

Query: 515 PLNFSIARWVVRGWPALEKAGELYGCAVVKDMWERPVLLFRNEWNVSHLMSD 360
           PL +S+ARWV+ GW AL+K G L+   V+KD+W RPVLLF+NEWNV+ L+ D
Sbjct: 475 PLGYSVARWVLNGWDALDKVGRLFNTLVIKDLWNRPVLLFKNEWNVNQLIED 526


>ref|WP_010309429.1| peptide chain release factor 3 [Synechococcus sp. CB0101]
          Length = 548

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 31/56 (55%), Positives = 42/56 (75%)
 Frame = -3

Query: 515 PLNFSIARWVVRGWPALEKAGELYGCAVVKDMWERPVLLFRNEWNVSHLMSDKQEI 348
           PL FS+ARWVV GWPAL + G ++ C  V+D W+RPVLLF+NEWN++ L  D  ++
Sbjct: 476 PLGFSVARWVVGGWPALGQVGRIFNCKTVRDAWDRPVLLFKNEWNLNQLGEDHPDL 531


>ref|NP_440833.1| peptide chain release factor 3 [Synechocystis sp. PCC 6803]
           gi|383321848|ref|YP_005382701.1| peptide-chain-release
           factor 3 [Synechocystis sp. PCC 6803 substr. GT-I]
           gi|383325017|ref|YP_005385870.1| peptide-chain-release
           factor 3 [Synechocystis sp. PCC 6803 substr. PCC-P]
           gi|383490901|ref|YP_005408577.1| peptide-chain-release
           factor 3 [Synechocystis sp. PCC 6803 substr. PCC-N]
           gi|384436168|ref|YP_005650892.1| peptide-chain-release
           factor 3 [Synechocystis sp. PCC 6803]
           gi|451814264|ref|YP_007450716.1| peptide-chain-release
           factor 3 [Synechocystis sp. PCC 6803]
           gi|499174556|ref|WP_010872143.1| peptide chain release
           factor 3 [Synechocystis sp. PCC 6803]
           gi|2494263|sp|P73473.1|RF3_SYNY3 RecName: Full=Peptide
           chain release factor 3; Short=RF-3
           gi|1652592|dbj|BAA17513.1| peptide-chain-release factor
           3 [Synechocystis sp. PCC 6803]
           gi|339273200|dbj|BAK49687.1| peptide-chain-release
           factor 3 [Synechocystis sp. PCC 6803]
           gi|359271167|dbj|BAL28686.1| peptide-chain-release
           factor 3 [Synechocystis sp. PCC 6803 substr. GT-I]
           gi|359274337|dbj|BAL31855.1| peptide-chain-release
           factor 3 [Synechocystis sp. PCC 6803 substr. PCC-N]
           gi|359277507|dbj|BAL35024.1| peptide-chain-release
           factor 3 [Synechocystis sp. PCC 6803 substr. PCC-P]
           gi|407958009|dbj|BAM51249.1| peptide chain release
           factor 3 [Synechocystis sp. PCC 6803]
           gi|451780233|gb|AGF51202.1| peptide-chain-release factor
           3 [Synechocystis sp. PCC 6803]
          Length = 547

 Score = 79.0 bits (193), Expect = 6e-13
 Identities = 35/65 (53%), Positives = 46/65 (70%)
 Frame = -3

Query: 515 PLNFSIARWVVRGWPALEKAGELYGCAVVKDMWERPVLLFRNEWNVSHLMSDKQEIGELK 336
           PL FS+ARWVV GW ALEKAG L+   VVKD W+ PVLLF+N+WN+  +  D  ++ +L 
Sbjct: 481 PLGFSLARWVVEGWDALEKAGRLFNTVVVKDRWDAPVLLFKNQWNLEQVAGDCLDL-KLS 539

Query: 335 PYALP 321
             A+P
Sbjct: 540 AIAIP 544


>ref|WP_010317536.1| peptide chain release factor 3 [Synechococcus sp. CB0205]
          Length = 547

 Score = 78.6 bits (192), Expect = 8e-13
 Identities = 30/56 (53%), Positives = 41/56 (73%)
 Frame = -3

Query: 515 PLNFSIARWVVRGWPALEKAGELYGCAVVKDMWERPVLLFRNEWNVSHLMSDKQEI 348
           PL FS+ARWVV GW  LEK G ++ C  V+D W+RPVLLF+N+WN++ L  D  ++
Sbjct: 475 PLGFSVARWVVGGWAELEKVGRIFNCKTVRDAWDRPVLLFKNDWNLNQLAEDHPDL 530


>ref|WP_006910463.1| peptide chain release factor 3 [Cyanobium sp. PCC 7001]
           gi|197626003|gb|EDY38562.1| peptide chain release factor
           3 [Cyanobium sp. PCC 7001]
          Length = 598

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 29/56 (51%), Positives = 41/56 (73%)
 Frame = -3

Query: 515 PLNFSIARWVVRGWPALEKAGELYGCAVVKDMWERPVLLFRNEWNVSHLMSDKQEI 348
           P+ F++ARWV  GWPALE  G ++ C  V+D W+RPVLLF+N+WN++ L  D  E+
Sbjct: 526 PMGFTVARWVSGGWPALESVGRIFNCKPVRDAWDRPVLLFKNDWNLNQLQEDHPEL 581


>ref|YP_001734946.1| peptide chain release factor 3 [Synechococcus sp. PCC 7002]
           gi|501264295|ref|WP_012307313.1| peptide chain release
           factor 3 [Synechococcus sp. PCC 7002]
           gi|169885977|gb|ACA99690.1| peptide chain release factor
           3 [Synechococcus sp. PCC 7002]
          Length = 538

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 29/52 (55%), Positives = 41/52 (78%)
 Frame = -3

Query: 515 PLNFSIARWVVRGWPALEKAGELYGCAVVKDMWERPVLLFRNEWNVSHLMSD 360
           P+ +S+ARWV  GW ALEKAG+++   +VKD+WERPV+LF+NEWN+  +  D
Sbjct: 470 PIPYSVARWVTNGWEALEKAGKIFNTMIVKDLWERPVILFKNEWNLHQIQGD 521


>ref|XP_003059819.1| predicted protein [Micromonas pusilla CCMP1545]
           gi|226458474|gb|EEH55771.1| predicted protein
           [Micromonas pusilla CCMP1545]
          Length = 552

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 33/68 (48%), Positives = 45/68 (66%)
 Frame = -3

Query: 512 LNFSIARWVVRGWPALEKAGELYGCAVVKDMWERPVLLFRNEWNVSHLMSDKQEIGELKP 333
           L F++ARWV  GW A++ AG ++    VKD+W  PVLLF+N WNV  L++D  EIG L P
Sbjct: 485 LPFNVARWVEGGWDAVDAAGRIFNAQCVKDVWGAPVLLFKNAWNVDQLVADTPEIGTLSP 544

Query: 332 YALPDT*D 309
           ++ P   D
Sbjct: 545 FSKPPAAD 552


>ref|WP_009789853.1| peptide chain release factor 3 [Synechococcus sp. BL107]
           gi|116066051|gb|EAU71808.1| peptide chain release factor
           3 [Synechococcus sp. BL107]
          Length = 548

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 30/55 (54%), Positives = 38/55 (69%)
 Frame = -3

Query: 515 PLNFSIARWVVRGWPALEKAGELYGCAVVKDMWERPVLLFRNEWNVSHLMSDKQE 351
           PL + +ARWV  GWP LEK G ++ C  V+D W RPVLLF+NEWN++ L  D  E
Sbjct: 476 PLGYQVARWVTGGWPELEKLGRIFNCKTVRDAWNRPVLLFKNEWNLNQLNQDHPE 530


>ref|YP_007069642.1| peptide chain release factor 3 (bRF-3) [Leptolyngbya sp. PCC 7376]
           gi|504945492|ref|WP_015132594.1| peptide chain release
           factor 3 (bRF-3) [Leptolyngbya sp. PCC 7376]
           gi|427354085|gb|AFY36808.1| bacterial peptide chain
           release factor 3 (bRF-3) [Leptolyngbya sp. PCC 7376]
          Length = 537

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 29/52 (55%), Positives = 42/52 (80%)
 Frame = -3

Query: 515 PLNFSIARWVVRGWPALEKAGELYGCAVVKDMWERPVLLFRNEWNVSHLMSD 360
           P+ +S+ARWV+ GW AL+KAG+++   VVKD+WERPVLL +NEWN++ +  D
Sbjct: 470 PMGYSVARWVLNGWEALDKAGKIFNTMVVKDVWERPVLLLKNEWNLNQIRGD 521


>ref|NP_894623.1| peptide chain release factor 3 [Prochlorococcus marinus str. MIT
           9313] gi|499442705|ref|WP_011130169.1| peptide chain
           release factor 3 [Prochlorococcus marinus]
           gi|33634980|emb|CAE20966.1| peptide chain release factor
           RF-3 [Prochlorococcus marinus str. MIT 9313]
          Length = 571

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 28/52 (53%), Positives = 40/52 (76%)
 Frame = -3

Query: 515 PLNFSIARWVVRGWPALEKAGELYGCAVVKDMWERPVLLFRNEWNVSHLMSD 360
           P+ F +ARWV  GWPAL++ G ++ C  V+D W+RPVLLF+NEWN++ L+ D
Sbjct: 499 PMGFQVARWVSDGWPALDEMGRIFNCKTVQDAWQRPVLLFKNEWNLNQLLDD 550


>ref|WP_006106022.1| peptide chain release factor 3 [Coleofasciculus chthonoplastes]
           gi|196176094|gb|EDX71112.1| peptide chain release factor
           3 [Coleofasciculus chthonoplastes PCC 7420]
          Length = 542

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 33/55 (60%), Positives = 41/55 (74%)
 Frame = -3

Query: 512 LNFSIARWVVRGWPALEKAGELYGCAVVKDMWERPVLLFRNEWNVSHLMSDKQEI 348
           L +S+ARWV  GW ALEKAG L+  AVVKD W RPVLLF+NEWN+  ++ D  E+
Sbjct: 471 LPYSVARWVAGGWQALEKAGRLFNTAVVKDNWGRPVLLFKNEWNLQQVIGDHPEL 525